Statespaceminer app

Bilsland, A. (2013) Statespaceminer app. [Data Collection]

Collection description

A windows console app for statespace analysis of classical (synchronous) threshold Boolean gene network models. Threshold rules are applied on a signed adjacency matrix. For each A(i,j) the interaction i->j is activating if A(i,j)=1 and repressive if A(i,j)=-1. The program finds number and size of basins of attraction, attractor states and coherence metrics for networks of N<25.

Statespace and attractor states can be saved as Pajek partitions for visualisation. Adjustment of thresholds and weights is possible globally, or on specific nodes. Node targeting functions allow constitutive activation or repression to be modelled.

Funding:
College / School: College of Medical Veterinary and Life Sciences > School of Cancer Sciences
Date Deposited: 25 Mar 2019 12:16
URI: http://researchdata.gla.ac.uk/id/eprint/756

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Bilsland, A. (2013); Statespaceminer app

Sourceforge

http://researchdata.gla.ac.uk/756

Retrieved: 2022-12-09