<?xml version='1.0' encoding='utf-8'?>
<eprints xmlns='http://eprints.org/ep2/data/2.0'>
  <eprint id='https://researchdata.gla.ac.uk/id/eprint/1333'>
    <eprintid>1333</eprintid>
    <rev_number>40</rev_number>
    <documents>
      <document id='https://researchdata.gla.ac.uk/id/document/5391'>
        <docid>5391</docid>
        <rev_number>4</rev_number>
        <files>
          <file id='https://researchdata.gla.ac.uk/id/file/28112'>
            <fileid>28112</fileid>
            <datasetid>document</datasetid>
            <objectid>5391</objectid>
            <filename>Readme-summary-of-TNBC-dataset.txt</filename>
            <mime_type>text/plain</mime_type>
            <hash>bb2cffe24b95465f1b298803563d3a6a</hash>
            <hash_type>MD5</hash_type>
            <filesize>1895</filesize>
            <mtime>2022-08-05 11:18:04</mtime>
            <url>https://researchdata.gla.ac.uk/1333/1/Readme-summary-of-TNBC-dataset.txt</url>
          </file>
        </files>
        <eprintid>1333</eprintid>
        <pos>1</pos>
        <placement>1</placement>
        <mime_type>text/plain</mime_type>
        <format>Text</format>
        <language>en</language>
        <security>public</security>
        <license>cc_by_4</license>
        <main>Readme-summary-of-TNBC-dataset.txt</main>
        <content>readme</content>
      </document>
      <document id='https://researchdata.gla.ac.uk/id/document/5392'>
        <docid>5392</docid>
        <rev_number>1</rev_number>
        <files>
          <file id='https://researchdata.gla.ac.uk/id/file/28115'>
            <fileid>28115</fileid>
            <datasetid>document</datasetid>
            <objectid>5392</objectid>
            <filename>indexcodes.txt</filename>
            <mime_type>text/plain</mime_type>
            <hash>ee4c98596820b6231435b9c2d9306fba</hash>
            <hash_type>MD5</hash_type>
            <filesize>1015</filesize>
            <mtime>2022-08-05 11:18:28</mtime>
            <url>https://researchdata.gla.ac.uk/1333/2/indexcodes.txt</url>
          </file>
        </files>
        <eprintid>1333</eprintid>
        <pos>2</pos>
        <placement>2</placement>
        <mime_type>text/plain</mime_type>
        <format>other</format>
        <formatdesc>Generate index codes conversion from Text to indexcodes</formatdesc>
        <language>en</language>
        <security>public</security>
        <main>indexcodes.txt</main>
        <relation>
          <item>
            <type>http://eprints.org/relation/isVersionOf</type>
            <uri>https://researchdata.gla.ac.uk/id/document/5391</uri>
          </item>
          <item>
            <type>http://eprints.org/relation/isVolatileVersionOf</type>
            <uri>https://researchdata.gla.ac.uk/id/document/5391</uri>
          </item>
          <item>
            <type>http://eprints.org/relation/isIndexCodesVersionOf</type>
            <uri>https://researchdata.gla.ac.uk/id/document/5391</uri>
          </item>
        </relation>
      </document>
      <document id='https://researchdata.gla.ac.uk/id/document/5416'>
        <docid>5416</docid>
        <rev_number>3</rev_number>
        <files>
          <file id='https://researchdata.gla.ac.uk/id/file/28348'>
            <fileid>28348</fileid>
            <datasetid>document</datasetid>
            <objectid>5416</objectid>
            <filename>1A_Stroma.tiff</filename>
            <mime_type>image/tiff</mime_type>
            <hash>5b84733b6b034b7d8de63e4d27050c17</hash>
            <hash_type>MD5</hash_type>
            <filesize>428520666</filesize>
            <mtime>2022-08-15 13:15:23</mtime>
            <url>https://researchdata.gla.ac.uk/1333/3/1A_Stroma.tiff</url>
          </file>
        </files>
        <eprintid>1333</eprintid>
        <pos>3</pos>
        <placement>3</placement>
        <mime_type>image/tiff</mime_type>
        <format>Image</format>
        <language>en</language>
        <security>public</security>
        <license>cc_by_4</license>
        <main>1A_Stroma.tiff</main>
        <content>data</content>
      </document>
      <document id='https://researchdata.gla.ac.uk/id/document/5417'>
        <docid>5417</docid>
        <rev_number>4</rev_number>
        <files>
          <file id='https://researchdata.gla.ac.uk/id/file/28350'>
            <fileid>28350</fileid>
            <datasetid>document</datasetid>
            <objectid>5417</objectid>
            <filename>1A_Tumour_Core.tiff</filename>
            <mime_type>image/tiff</mime_type>
            <hash>cb419f411298a05bb0353f692a569366</hash>
            <hash_type>MD5</hash_type>
            <filesize>370355162</filesize>
            <mtime>2022-08-15 13:15:49</mtime>
            <url>https://researchdata.gla.ac.uk/1333/4/1A_Tumour_Core.tiff</url>
          </file>
        </files>
        <eprintid>1333</eprintid>
        <pos>4</pos>
        <placement>4</placement>
        <mime_type>image/tiff</mime_type>
        <format>Image</format>
        <language>en</language>
        <security>public</security>
        <license>cc_by_4</license>
        <main>1A_Tumour_Core.tiff</main>
        <content>data</content>
      </document>
      <document id='https://researchdata.gla.ac.uk/id/document/5418'>
        <docid>5418</docid>
        <rev_number>3</rev_number>
        <files>
          <file id='https://researchdata.gla.ac.uk/id/file/28352'>
            <fileid>28352</fileid>
            <datasetid>document</datasetid>
            <objectid>5418</objectid>
            <filename>1B_Stroma.tiff</filename>
            <mime_type>image/tiff</mime_type>
            <hash>3fdad9f31b5105f0cfbd3c85e8e9fb8d</hash>
            <hash_type>MD5</hash_type>
            <filesize>327851430</filesize>
            <mtime>2022-08-15 13:16:14</mtime>
            <url>https://researchdata.gla.ac.uk/1333/5/1B_Stroma.tiff</url>
          </file>
        </files>
        <eprintid>1333</eprintid>
        <pos>5</pos>
        <placement>5</placement>
        <mime_type>image/tiff</mime_type>
        <format>Image</format>
        <language>en</language>
        <security>public</security>
        <license>cc_by_4</license>
        <main>1B_Stroma.tiff</main>
        <content>data</content>
      </document>
      <document id='https://researchdata.gla.ac.uk/id/document/5419'>
        <docid>5419</docid>
        <rev_number>3</rev_number>
        <files>
          <file id='https://researchdata.gla.ac.uk/id/file/28354'>
            <fileid>28354</fileid>
            <datasetid>document</datasetid>
            <objectid>5419</objectid>
            <filename>1B_Tumour_Core.tiff</filename>
            <mime_type>image/tiff</mime_type>
            <hash>f624b73d6219bf11b1f34b5bc0c057fb</hash>
            <hash_type>MD5</hash_type>
            <filesize>427028166</filesize>
            <mtime>2022-08-15 13:17:12</mtime>
            <url>https://researchdata.gla.ac.uk/1333/6/1B_Tumour_Core.tiff</url>
          </file>
        </files>
        <eprintid>1333</eprintid>
        <pos>6</pos>
        <placement>6</placement>
        <mime_type>image/tiff</mime_type>
        <format>Image</format>
        <language>en</language>
        <security>public</security>
        <license>cc_by_4</license>
        <main>1B_Tumour_Core.tiff</main>
        <content>data</content>
      </document>
      <document id='https://researchdata.gla.ac.uk/id/document/5420'>
        <docid>5420</docid>
        <rev_number>3</rev_number>
        <files>
          <file id='https://researchdata.gla.ac.uk/id/file/28356'>
            <fileid>28356</fileid>
            <datasetid>document</datasetid>
            <objectid>5420</objectid>
            <filename>RCC_Files.zip</filename>
            <mime_type>application/zip</mime_type>
            <hash>b6e93fbbeccb51c66556623c0d809b53</hash>
            <hash_type>MD5</hash_type>
            <filesize>101539</filesize>
            <mtime>2022-08-15 13:17:19</mtime>
            <url>https://researchdata.gla.ac.uk/1333/7/RCC_Files.zip</url>
          </file>
        </files>
        <eprintid>1333</eprintid>
        <pos>7</pos>
        <placement>7</placement>
        <mime_type>application/zip</mime_type>
        <format>Text</format>
        <language>en</language>
        <security>public</security>
        <license>cc_by_4</license>
        <main>RCC_Files.zip</main>
        <content>data</content>
      </document>
      <document id='https://researchdata.gla.ac.uk/id/document/5421'>
        <docid>5421</docid>
        <rev_number>3</rev_number>
        <files>
          <file id='https://researchdata.gla.ac.uk/id/file/28358'>
            <fileid>28358</fileid>
            <datasetid>document</datasetid>
            <objectid>5421</objectid>
            <filename>TNBC-negprobe-normalised-data-all-GeoMx.xlsx</filename>
            <mime_type>application/vnd.openxmlformats-officedocument.spreadsheetml.sheet</mime_type>
            <hash>282a54747b48fcd85f20b16fd4941dcf</hash>
            <hash_type>MD5</hash_type>
            <filesize>206155</filesize>
            <mtime>2022-08-15 13:17:26</mtime>
            <url>https://researchdata.gla.ac.uk/1333/8/TNBC-negprobe-normalised-data-all-GeoMx.xlsx</url>
          </file>
        </files>
        <eprintid>1333</eprintid>
        <pos>8</pos>
        <placement>8</placement>
        <mime_type>application/vnd.openxmlformats-officedocument.spreadsheetml.sheet</mime_type>
        <format>Spreadsheet</format>
        <language>en</language>
        <security>public</security>
        <license>cc_by_4</license>
        <main>TNBC-negprobe-normalised-data-all-GeoMx.xlsx</main>
        <content>data</content>
      </document>
      <document id='https://researchdata.gla.ac.uk/id/document/5422'>
        <docid>5422</docid>
        <rev_number>3</rev_number>
        <files>
          <file id='https://researchdata.gla.ac.uk/id/file/28360'>
            <fileid>28360</fileid>
            <datasetid>document</datasetid>
            <objectid>5422</objectid>
            <filename>TNBC-raw-data-GeoMx.xlsx</filename>
            <mime_type>application/vnd.openxmlformats-officedocument.spreadsheetml.sheet</mime_type>
            <hash>f1ece4a83a1e76e474d1574211f6e061</hash>
            <hash_type>MD5</hash_type>
            <filesize>272977</filesize>
            <mtime>2022-08-15 13:17:31</mtime>
            <url>https://researchdata.gla.ac.uk/1333/9/TNBC-raw-data-GeoMx.xlsx</url>
          </file>
        </files>
        <eprintid>1333</eprintid>
        <pos>9</pos>
        <placement>9</placement>
        <mime_type>application/vnd.openxmlformats-officedocument.spreadsheetml.sheet</mime_type>
        <format>Spreadsheet</format>
        <language>en</language>
        <security>public</security>
        <license>cc_by_4</license>
        <main>TNBC-raw-data-GeoMx.xlsx</main>
        <content>data</content>
      </document>
    </documents>
    <eprint_status>archive</eprint_status>
    <userid>5</userid>
    <dir>disk0/00/00/13/33</dir>
    <datestamp>2022-08-15 13:24:18</datestamp>
    <lastmod>2024-01-25 09:28:37</lastmod>
    <status_changed>2022-08-15 13:24:18</status_changed>
    <type>data_collection</type>
    <metadata_visibility>show</metadata_visibility>
    <creators>
      <item>
        <name>
          <family>Leslie</family>
          <given>Holly</given>
        </name>
        <enlightenid>53421</enlightenid>
        <orcid>0000-0001-8898-3600</orcid>
      </item>
      <item>
        <name>
          <family>Hatthakarnkul</family>
          <given>Phimmada</given>
        </name>
        <enlightenid>60118</enlightenid>
        <orcid>0000-0002-5274-5480</orcid>
      </item>
    </creators>
    <uniqueid>glaresearchdata:2022-08-15-1333</uniqueid>
    <title>Spatial transcriptomic analysis of tumoural (PanCK+) and stromal (PanCK-) regions in TNBC tissue samples using an immunoncology  probe-based panel on the GeoMx™ Digital Spatial Profiler (DSP)</title>
    <ispublished>pub</ispublished>
    <divisions>
      <item>25100000</item>
    </divisions>
    <note>Funding acknowledged from NHS Greater Glasgow and Clyde Breast Endowment Fund</note>
    <abstract>This dataset was obtained by in-situ hybridisation of probes to a tissue microarray (TMA) of human triple-negative breast cancer (TNBC) tissue. The purpose of this dataset is to allow interrogation of the differential transcriptomic profiles of tumoural (PanCK+) and stromal (PanCK-) regions of TNBC disease to further investigate disease pathogenesis and spark hypothesis-driven research into potential new therapies and prognostic markers for patients with this subtype of disease.</abstract>
    <date>2022-08-15</date>
    <date_type>published</date_type>
    <publisher>University of Glasgow</publisher>
    <id_number>10.5525/gla.researchdata.1333</id_number>
    <data_type>
      <item>Image</item>
      <item>Spreadsheet</item>
      <item>Text</item>
    </data_type>
    <copyright_holders>
      <item>University of Glasgow</item>
    </copyright_holders>
    <pending>FALSE</pending>
    <language>EN</language>
    <collection_date>
      <date_from>2021-05-04</date_from>
      <date_to>2021-05-20</date_to>
    </collection_date>
    <retention_date>2032-08-05</retention_date>
    <retention_action>R</retention_action>
    <dataset_origin>
      <item>file_transfer</item>
    </dataset_origin>
    <ingest_data>
      <item>
      </item>
      <item>
      </item>
      <item>
      </item>
      <item>
      </item>
      <item>
      </item>
      <item>
      </item>
      <item>
      </item>
    </ingest_data>
    <archive_data>
      <item>
      </item>
      <item>
      </item>
      <item>
      </item>
      <item>
      </item>
      <item>
      </item>
      <item>
      </item>
      <item>
      </item>
    </archive_data>
    <ethics_consent_required>TRUE</ethics_consent_required>
    <ethics_application_number>REC 22/WS/0020</ethics_application_number>
    <ethics_committee>nhs</ethics_committee>
    <ethics_notes>Biorepository Application Number 695
NHS GG&amp;C Biorepository Management Committee</ethics_notes>
    <request_copy>FALSE</request_copy>
    <repo_link>
      <item>
        <title>Spatial transcriptomic analysis of tumour with high and low CAIX expression in TNBC tissue samples using GeoMx™ RNA assay</title>
        <link>https://eprints.gla.ac.uk/id/eprint/302532</link>
      </item>
    </repo_link>
  </eprint>
</eprints>
