Dataset: SPIM micro-PIV measurements

Files:
3d_flow_zf_heart_3dpf.avi
2d_flow_z006_3dpf_zebrafish_atrium.avi


3d_flow_zf_heart_3dpf is a video of a full 3D flow in the atrium of a ~3dpf zebrafish heart,
using OpenPIV results with SPIM imaging. Phase bin size = 0.2, z_step size = 8 microns.

The vectors are scaled to the square root of their magnitudes (and hence the real maximum
velocity should be the square of the value shown on the colorbar).

File 2d_flow_z006_3dpf_zebrafish_atrium is showing a single plane (z = 48 microns) of the 3D video.

RAW DATA Available on request:

Folders:
3dpf zebrafish blood vessel - .zip file contains raw data
and results of blood flow measurements using
2 different metrics in the zebrafish
blood vessels. fRBCs express GATA:DsRed. ZF ~3dpf.
Data collected: 2016-06-30

3dpf zebrafish heart - Folders in the .zip file contain raw data
of a ~3dpf zebrafish heart imaged with SPIM in
3 channels (red, green and brighfield).
Results include OpenPIV analysis as well as
videos of the flow in the atrium.
Data collected: 2017-01-11

50um tube flow - Folders contain raw data of 1.04 micron diameter
fluorescent bead flow in a 50 micron
diameter FEP tube at 0.5 and 1.0 micro-litre/minute flow rates,
and results of OpenPIV analysis using BF and FLR imaging.
Data collected: 2016-10-06

Authors:
Vytautas Zickus and Jonathan M. Taylor

Data collected:
2016/06 - 2017/01

Funding:
VZ is supported by a research training support grant from the
EPSRC (EP/M506539/1). This work was also partially supported
by the British Heart Foundation (NH/14/2/31074), and used
equipment funded by the EPSRC (EP/M028135/1) and
the Royal Society (RG130249).

Notes:
Animals were maintained according to the
Animals (Scientific Procedures) Act 1986, United Kingdom.

Further information:
Jonathan.Taylor@glasgow.ac.uk