Scripts for 'Parity-specific differences in spatial genetics and dispersal in the
common lizard' 
Darren Hunter, Jean Clobert, Kathryn R Elmer 2024


01_ELT_data.txt:
includes sex, q-values from admixture from Recknagel et al. (2021), an assigned population based on q-value
					viv >= 0.9 & ovi <= 0.1 & latitude and longitude coordinates
					
02_unfiltered_autosomes.vcf.gz:
vcf file containing genotypes on autosomes for all individuals

03_create_sex_and_parity_lists.R:
Create lists of individuals of each parity and sex for subsetting with bcftools

04_filtering_vcf_by_sex_and_parity.sh
Uses bcftools to create combined vcf file after filtering each subset individually.
Then converts to plink format
					
05_MoransI_correlograms.R
Code for creating MoransI correlograms & bootstrapping

06_calc_roussets_a_code.R
Code for creating Rousset's a & bootstrapping

07_site_coordinates
Folder containing files with the coordinate perimeters for each of the sites

08_recapture_information.csv
csv file with each set of recaptures

09_additional_analyses.R
Post-processing of  05_MoransI_correlograms.R & 06_calc_roussets_a_code.R 
and additional analyses included in manuscript