Copyright - Gordon R. McNicol (University of Glasgow) Information on data files Data files difficult to understand in .dat format, recommend loading into Matlab using A=load("file_name.dat") (start script with format long to ensure data is not lost) and then recover figures by plotting appropriate columns or rows. "ode_output.dat", file contains baseline code output (with N=200) columns 1: Time (dimensionless - convert to dimensional to replicate figures) columns 2-N+2: Dimensionless concentration of actin monomers at nodes 1-N+1 columns N+3-2*N+3: Dimensionless concentration of family 1 actin filaments at nodes 1-N+1 columns 2*N+4-3*N+4: Dimensionless concentration of family 2 actin filaments at nodes 1-N+1 columns 3*N+5-4*N+5: Dimensionless concentration of stress fibres at nodes 1-N+1 columns 4*N+6-5*N+6: Dimensionless concentration of inactive myosin II at nodes 1-N+1 columns 5*N+7-6*N+7: Dimensionless concentration of activated myosin II at nodes 1-N+1 columns 6*N+8-7*N+8: Dimensionless density of free (low-affinity) integrins at nodes 1-N+1 columns 7*N+9-8*N+9: Dimensionless density of high-affinity integrins at nodes 1-N+1 columns 8*N+10-9*N+10: Dimensionless density of family 1 bound integrins (nascent adhesions) at nodes 1-N+1 columns 9*N+11-10*N+11: Dimensionless density of family 2 bound integrins (nascent adhesions) at nodes 1-N+1 columns 10*N+12-11*N+12: Dimensionless density of family 1 focal adhesions at nodes 1-N+1 columns 11*N+13-12*N+13: Dimensionless density of family 2 focal adhesions at nodes 1-N+1 columns 12*N+14-13*N+14: Dimensionless density of family 1 ligands at nodes 1-N+1 columns 13*N+15-14*N+15: Dimensionless density of family 2 ligands at nodes 1-N+1 columns 14*N+16-15*N+16: Dimensionless concentration of inactive ROCK at nodes 1-N+1 columns 15*N+17-16*N+17: Dimensionless concentration of activated ROCK at nodes 1-N+1 columns 16*N+18-17*N+18: Dimensionless concentration of unphosphorylated MLCP at nodes 1-N+1 columns 17*N+19-18*N+19: Dimensionless concentration of phosphorylated MLCP at nodes 1-N+1 columns 18*N+20-19*N+20: Dimensionless concentration of unphosphorylated cofilin at nodes 1-N+1 columns 19*N+21-20*N+21: Dimensionless concentration of phosphorylated cofilin at nodes 1-N+1 columns 20*N+22-21*N+22: Dimensionless concentration of unphosphorylated MLCK at nodes 1-N+1 columns 21*N+23-22*N+23: Dimensionless concentration of phosphorylated MLCK at nodes 1-N+1 columns 22*N+24-23*N+26: Dimensionless cell displacement at nodes 1-N+1 columns 23*N+27-24*N+29: Dimensionless ECM displacement at nodes 1-N+1 "stress_cell.dat", file contrains baseline code output (with N=200) column i (with i=1,2,...N+1) is the dimensionless stress in the cell at node i, each row is the stress evaluated at the snapshots in time (see paper) "stress_ECM.dat", file contrains baseline code output (with N=200) column i (with i=1,2,...N+1) is the dimensionless stress in the ECM at node i, each row is the stress evaluated at the snapshots in time (see paper) "strain_cell.dat", file contrains baseline code output (with N=200) column i (with i=1,2,...N+1) is the strain in the cell at node i, each row is the stress evaluated at the snapshots in time (see paper) "strain_ECM.dat", file contrains baseline code output (with N=200) column i (with i=1,2,...N+1) is the stain in the ECM at node i, each row is the stress evaluated at the snapshots in time (see paper) "ode_output_vary_delta.dat", file contains varying delta output column 1: value of delta column 2: fraction of actin in monomeric form at t=10000s column 3: fraction of actin in filament form at t=10000s column 4: fraction of actin recruited into stress fibres at t=10000s column 5: fraction of inactivated unbound myosin II at t=10000s column 6: fraction of activated unbound myosin II at t=10000s column 7: fraction of integrins in their free (low-affinity) state at t=10000s column 8: fraction of integrins in their high-affinity state at t=10000s column 9: fraction of integrins bound to ECM ligands at t=10000s column 10: fraction of integrins recruited into focal adhesions at t=10000s column 11: fraction of ROCK activated at t=10000s column 12: fraction of MLCP phosphorylated at t=10000s column 13: fraction of MLCK phosphorylated at t=10000s column 14: fraction of cofilin phosphorylated at t=10000s column 15: difference between maximum local concentration of activated ROCK and the average ROCK concentration in the cell at t=10000s column 16: average activated ROCK concentration at t=10000s column 17: maximum concentration of activated ROCK at t=10000s column 18: maximum absolute value of u-w (i.e. displacement of cell minus displacement of ECM) at t=10000s column 19: average across the length of the cell of the absolute value of u-w at t=10000s column 20: minimum cell length for 0