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##The following is written by Savanna van Mesdag, going through the relevant coding and analyses for the biodiversity analyses for the Barrow plant communities.

#setwd#

#To run the following code to carry out the analyses, the following packages must be installed#

install.packages("iNEXT", repos =   "http://chao.stat.nthu.edu.tw/wordpress/software_download/")
## Installing package into 'C:/Users/Savanna/AppData/Local/R/win-library/4.3'
## (as 'lib' is unspecified)
## Warning: unable to access index for repository http://chao.stat.nthu.edu.tw/wordpress/software_download/src/contrib:
##   cannot open URL 'http://chao.stat.nthu.edu.tw/wordpress/software_download/src/contrib/PACKAGES'
## Warning: package 'iNEXT' is not available for this version of R
## 
## A version of this package for your version of R might be available elsewhere,
## see the ideas at
## https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
## Warning: unable to access index for repository http://chao.stat.nthu.edu.tw/wordpress/software_download/bin/windows/contrib/4.3:
##   cannot open URL 'http://chao.stat.nthu.edu.tw/wordpress/software_download/bin/windows/contrib/4.3/PACKAGES'
install.packages('devtools', repos = "https://github.com/r-lib/devtools")
## Installing package into 'C:/Users/Savanna/AppData/Local/R/win-library/4.3'
## (as 'lib' is unspecified)
## Warning: unable to access index for repository https://github.com/r-lib/devtools/src/contrib:
##   cannot open URL 'https://github.com/r-lib/devtools/src/contrib/PACKAGES'
## Warning: package 'devtools' is not available for this version of R
## 
## A version of this package for your version of R might be available elsewhere,
## see the ideas at
## https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
## Warning: unable to access index for repository https://github.com/r-lib/devtools/bin/windows/contrib/4.3:
##   cannot open URL 'https://github.com/r-lib/devtools/bin/windows/contrib/4.3/PACKAGES'
install.packages('AnneChao/iNEXT', repos =  "http://chao.stat.nthu.edu.tw/wordpress/software_download/")
## Installing package into 'C:/Users/Savanna/AppData/Local/R/win-library/4.3'
## (as 'lib' is unspecified)
## Warning: unable to access index for repository http://chao.stat.nthu.edu.tw/wordpress/software_download/src/contrib:
##   cannot open URL 'http://chao.stat.nthu.edu.tw/wordpress/software_download/src/contrib/PACKAGES'
## Warning: package 'AnneChao/iNEXT' is not available for this version of R
## 
## A version of this package for your version of R might be available elsewhere,
## see the ideas at
## https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
## Warning: unable to access index for repository http://chao.stat.nthu.edu.tw/wordpress/software_download/bin/windows/contrib/4.3:
##   cannot open URL 'http://chao.stat.nthu.edu.tw/wordpress/software_download/bin/windows/contrib/4.3/PACKAGES'
install.packages("ggthemes", repos = "https://github.com/jrnold/ggthemes")
## Installing package into 'C:/Users/Savanna/AppData/Local/R/win-library/4.3'
## (as 'lib' is unspecified)
## Warning: unable to access index for repository https://github.com/jrnold/ggthemes/src/contrib:
##   cannot open URL 'https://github.com/jrnold/ggthemes/src/contrib/PACKAGES'
## Warning: package 'ggthemes' is not available for this version of R
## 
## A version of this package for your version of R might be available elsewhere,
## see the ideas at
## https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
## Warning: unable to access index for repository https://github.com/jrnold/ggthemes/bin/windows/contrib/4.3:
##   cannot open URL 'https://github.com/jrnold/ggthemes/bin/windows/contrib/4.3/PACKAGES'
install.packages("vegan", repos = " https://github.com/vegandevs/vegan")
## Installing package into 'C:/Users/Savanna/AppData/Local/R/win-library/4.3'
## (as 'lib' is unspecified)
## Warning: unable to access index for repository   https://github.com/vegandevs/vegan/src/contrib:
##   cannot open URL '  https://github.com/vegandevs/vegan/src/contrib/PACKAGES'
## Warning: package 'vegan' is not available for this version of R
## 
## A version of this package for your version of R might be available elsewhere,
## see the ideas at
## https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
## Warning: unable to access index for repository   https://github.com/vegandevs/vegan/bin/windows/contrib/4.3:
##   cannot open URL '  https://github.com/vegandevs/vegan/bin/windows/contrib/4.3/PACKAGES'

##The packages also need to be loaded prior to running the analyses and producing graphs#

library(devtools)
## Loading required package: usethis
library(iNEXT)
library(ggplot2)
library(ggthemes)
## Warning: package 'ggthemes' was built under R version 4.3.1
library(vegan)
## Loading required package: permute
## 
## Attaching package: 'permute'
## The following object is masked from 'package:devtools':
## 
##     check
## Loading required package: lattice
## This is vegan 2.6-4

#Loading Barrow data

urlfile1 <- 'https://raw.githubusercontent.com/Savannankvm/Biodiversity-analyses-for-six-study-sites/PhD-files/Barrow_Abundance_Data.csv?token=GHSAT0AAAAAACG4POBNQ6K6T4V5KYG6HMXSZHOAFWQ'

Barrow_Nos <-read.csv(urlfile1)

#To look at the Barrow data#

print(Barrow_Nos)
##    Quadrat.1 Quadrat.2 Quadrat.3 Quadrat.4 Quadrat.5 Quadrat.6 Quadrat.7
## 1          4         0       127         0        32         0         0
## 2          0         0         0         0         0         0         1
## 3          0         0         0         0         0         8         0
## 4          4         6         1         0         6         0         0
## 5          0         0         0         0         0         0         0
## 6          0        30         0         0         0         0         0
## 7          0        30         0         0         0         0         0
## 8          0         0       138         9         8         0         0
## 9          0         0         0         0         0         1         0
## 10         0        30        20       110         0         0        10
## 11         0         0         0         0         0         0       120
## 12         0         0         0         0         0         0         0
## 13         0         0         0         0         0         0         0
## 14         0         0         1         2         1         0         1
## 15         0         0         0         0         0         0        54
## 16         0         0         0         0         2         0         0
## 17         0         0         0         0         0         0         0
## 18         0         0        14         0         0         0         0
## 19        66         0         0         0         2         0         0
## 20         0        19         1        39         2        54        42
## 21         0        87        88         0         1         0         0
## 22         0         0         0         0         0         1         0
## 23         0         0         0         0         1         0         0
## 24         0        55         0        50         3       169        10
## 25         0         5         1        25         2         0         0
## 26         0         0         0         0         0         0         0
## 27         0         0         0         0         0         0         0
## 28         0         0         0         1         0         0         0
## 29         0         0         0         0         0         0        42
## 30        18         0         0         0        30         0         0
## 31         1         0         0         0         0         0         0
## 32         0        12         0         1         3         2         0
## 33         0         0         0         0         0        85         2
## 34         0        67        18        31        12       140         0
## 35         3         3         0         0         0         0         0
## 36         0         0         0         0         0         0         0
## 37         0         0         0         0         0         0         0
## 38        22         0         0         0         4         0         0
## 39         0         0         0         0         3         0         1
## 40         0         0         0         0         0         3         0
## 41         0         0         0         0         0         0        37
## 42         0         0         0         0         0         0         2
## 43         0         0         0         0       160         0         0
## 44         0         0         0         1         0         0         0
## 45         0         0         0         0         0         0         0
## 46         0        34        10         0         0         0         0
## 47         0         0         0         0         0         0         0
## 48         0         0         0         0         0         1         0
## 49         4         0         0         0         0         0         0
## 50         0         0         0         0         0         0         2
## 51         2         0         1         0         0         0         0
## 52         8        64        22         8         2         0         2
## 53         0         2         0         0         0         0         0
## 54         0         0         4        17         0         0         2
## 55         0         0         0         0         3         0         0
##    Quadrat.8 Quadrat.9 Quadrat.10 Quadrat.11
## 1          0         0          0          0
## 2          5         0          0          0
## 3          0         0          5          0
## 4          2         0          0          4
## 5          2         0          0          0
## 6          0         0          0          0
## 7          0         0          0          0
## 8          0         0          0          0
## 9          0         0          0          0
## 10         0         0          0          0
## 11        40         0          0          0
## 12         0         2          0          5
## 13        14         1          0          0
## 14         0         0          0          0
## 15        15         0          0          0
## 16         0         0          1          0
## 17         0        25          0          6
## 18         7         2          1          4
## 19         0         0          0          0
## 20        19        22         41         44
## 21         0         0          2          0
## 22         0         0          0          0
## 23         0         0          0          0
## 24        30         0         82          4
## 25         0         0          5          0
## 26         0         0         10          0
## 27         0         0          0         22
## 28         0         0          0          0
## 29         0         0          0          0
## 30         0         0          0          0
## 31         0         0          0          0
## 32         0         2          0         24
## 33         0         2          5          0
## 34        14         2         98         17
## 35         0         3          0          0
## 36       153         0          0          0
## 37         0         1          0          0
## 38         0         3          0         14
## 39         3         0          0          3
## 40         0         0          0          0
## 41         1         0          0          2
## 42         0         5          0          0
## 43         0         0          0          0
## 44         0         0          0          0
## 45         0         1          0          0
## 46         0         0          0          0
## 47         0         6          0          0
## 48         0         0          0          0
## 49         0         0          0          0
## 50         0         0          0          0
## 51         0         4          0          6
## 52         0         0          0          0
## 53         0         0          0          0
## 54         0         0          0          0
## 55       123         1          0          0

#colSums to establish sample size for each of the quadrats.

colSums(Barrow_Nos)
##  Quadrat.1  Quadrat.2  Quadrat.3  Quadrat.4  Quadrat.5  Quadrat.6  Quadrat.7 
##        132        444        446        294        277        464        328 
##  Quadrat.8  Quadrat.9 Quadrat.10 Quadrat.11 
##        428         82        250        155

#Setting m to sample size for Quadrat 1 (132 individuals.) This will give me observed #qD value that will be most representative for Quadrat and Community. Will do the same #for the other 10 communities below.

m <- c(132)

Barrow_Datam <- iNEXT(Barrow_Nos, q=c(0), datatype= "abundance", size = m)

Barrow_Datam
## Compare 11 assemblages with Hill number order q = 0.
## $class: iNEXT
## 
## $DataInfo: basic data information
##    Assemblage   n S.obs     SC f1 f2 f3 f4 f5 f6 f7 f8 f9 f10
## 1   Quadrat.1 132    10 0.9925  1  1  1  3  0  0  0  1  0   0
## 2   Quadrat.2 444    14 1.0000  0  1  1  0  1  1  0  0  0   0
## 3   Quadrat.3 446    14 0.9888  5  0  0  1  0  0  0  0  0   1
## 4   Quadrat.4 294    12 0.9898  3  1  0  0  0  0  0  1  1   0
## 5   Quadrat.5 277    19 0.9893  3  5  4  1  0  1  0  1  0   0
## 6   Quadrat.6 464    10 0.9935  3  1  1  0  0  0  0  1  0   0
## 7   Quadrat.7 328    15 0.9909  3  5  0  0  0  0  0  0  0   2
## 8   Quadrat.8 428    14 0.9977  1  2  1  0  1  0  1  0  0   0
## 9   Quadrat.9  82    16 0.9527  4  5  2  1  1  1  0  0  0   0
## 10 Quadrat.10 250    10 0.9920  2  1  0  0  3  0  0  0  0   1
## 11 Quadrat.11 155    13 1.0000  0  1  1  3  1  2  0  0  0   0
## 
## $iNextEst: diversity estimates with rarefied and extrapolated samples.
## $size_based (LCL and UCL are obtained for fixed size.)
## 
##    Assemblage   m        Method Order.q        qD    qD.LCL    qD.UCL        SC
## 1   Quadrat.1 132      Observed       0 10.000000  8.524239 11.475761 0.9925382
## 2   Quadrat.2 132   Rarefaction       0 12.857628 12.076397 13.638858 0.9879180
## 3   Quadrat.2 443   Rarefaction       0 14.000000 13.208628 14.791372 1.0000000
## 4   Quadrat.2 444      Observed       0 14.000000 13.208055 14.791945 1.0000000
## 5   Quadrat.2 445 Extrapolation       0 14.000000 13.207471 14.792529 1.0000000
## 6   Quadrat.3 132   Rarefaction       0 10.197489  9.113006 11.281972 0.9843032
## 7   Quadrat.3 445   Rarefaction       0 13.988789 11.012859 16.964720 0.9887892
## 8   Quadrat.3 446      Observed       0 14.000000 11.018614 16.981386 0.9888018
## 9   Quadrat.3 447 Extrapolation       0 14.011198 11.024165 16.998231 0.9888144
## 10  Quadrat.4 132   Rarefaction       0 10.032058  8.322506 11.741609 0.9854327
## 11  Quadrat.4 293   Rarefaction       0 11.989796  8.852577 15.127015 0.9897959
## 12  Quadrat.4 294      Observed       0 12.000000  8.854821 15.145179 0.9898191
## 13  Quadrat.4 295 Extrapolation       0 12.010181  8.855952 15.164410 0.9898422
## 14  Quadrat.5 132   Rarefaction       0 15.397332 13.292756 17.501909 0.9554301
## 15  Quadrat.5 276   Rarefaction       0 18.989170 16.159780 21.818560 0.9891697
## 16  Quadrat.5 277      Observed       0 19.000000 16.166375 21.833625 0.9892989
## 17  Quadrat.5 278 Extrapolation       0 19.010701 16.172834 21.848568 0.9894266
## 18  Quadrat.6 132   Rarefaction       0  6.909497  5.528330  8.290664 0.9855357
## 19  Quadrat.6 463   Rarefaction       0  9.993534  6.936483 13.050586 0.9935345
## 20  Quadrat.6 464      Observed       0 10.000000  6.938951 13.061049 0.9935438
## 21  Quadrat.6 465 Extrapolation       0 10.006456  6.941194 13.071719 0.9935531
## 22  Quadrat.7 132   Rarefaction       0 11.415039  9.971861 12.858217 0.9721341
## 23  Quadrat.7 327   Rarefaction       0 14.990854 12.659806 17.321902 0.9908537
## 24  Quadrat.7 328      Observed       0 15.000000 12.663762 17.336238 0.9909460
## 25  Quadrat.7 329 Extrapolation       0 15.009054 12.667610 17.350498 0.9910373
## 26  Quadrat.8 132   Rarefaction       0 11.777810 10.847504 12.708115 0.9827498
## 27  Quadrat.8 427   Rarefaction       0 13.997664 12.394461 15.600866 0.9976636
## 28  Quadrat.8 428      Observed       0 14.000000 12.394479 15.605521 0.9976852
## 29  Quadrat.8 429 Extrapolation       0 14.002315 12.394467 15.610163 0.9977067
## 30  Quadrat.9  81   Rarefaction       0 15.951220 13.391690 18.510749 0.9512195
## 31  Quadrat.9  82      Observed       0 16.000000 13.422830 18.577170 0.9526800
## 32  Quadrat.9  83 Extrapolation       0 16.047320 13.452491 18.642149 0.9540968
## 33  Quadrat.9 132 Extrapolation       0 17.234773 13.757204 20.712342 0.9896492
## 34 Quadrat.10 132   Rarefaction       0  8.766625  7.396902 10.136348 0.9853580
## 35 Quadrat.10 249   Rarefaction       0  9.992000  8.096298 11.887702 0.9920000
## 36 Quadrat.10 250      Observed       0 10.000000  8.099332 11.900668 0.9920320
## 37 Quadrat.10 251 Extrapolation       0 10.007968  8.101079 11.914857 0.9920639
## 38 Quadrat.11 132   Rarefaction       0 12.974684 11.876666 14.072702 0.9975639
## 39 Quadrat.11 154   Rarefaction       0 13.000000 11.894217 14.105783 1.0000000
## 40 Quadrat.11 155      Observed       0 13.000000 11.893400 14.106600 1.0000000
## 41 Quadrat.11 156 Extrapolation       0 13.000000 11.892697 14.107303 1.0000000
##       SC.LCL    SC.UCL
## 1  0.9773487 1.0000000
## 2  0.9843943 0.9914416
## 3  0.9966441 1.0000000
## 4  0.9966516 1.0000000
## 5  0.9966650 1.0000000
## 6  0.9767887 0.9918177
## 7  0.9822115 0.9953670
## 8  0.9820527 0.9955510
## 9  0.9820636 0.9955652
## 10 0.9744306 0.9964348
## 11 0.9805389 0.9990530
## 12 0.9796494 0.9999887
## 13 0.9796794 1.0000000
## 14 0.9432803 0.9675800
## 15 0.9783573 0.9999821
## 16 0.9784724 1.0000000
## 17 0.9785864 1.0000000
## 18 0.9776427 0.9934288
## 19 0.9878892 0.9991798
## 20 0.9875589 0.9995287
## 21 0.9875722 0.9995339
## 22 0.9640349 0.9802333
## 23 0.9824022 0.9993052
## 24 0.9824863 0.9994056
## 25 0.9825697 0.9995050
## 26 0.9773123 0.9881873
## 27 0.9932064 1.0000000
## 28 0.9929767 1.0000000
## 29 0.9930070 1.0000000
## 30 0.9193486 0.9830905
## 31 0.9206837 0.9846763
## 32 0.9219930 0.9862006
## 33 0.9619623 1.0000000
## 34 0.9773594 0.9933567
## 35 0.9842147 0.9997853
## 36 0.9833682 1.0000000
## 37 0.9834345 1.0000000
## 38 0.9903970 1.0000000
## 39 0.9925783 1.0000000
## 40 0.9923293 1.0000000
## 41 0.9924263 1.0000000
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$size_based to view complete output.
## 
## $coverage_based (LCL and UCL are obtained for fixed coverage; interval length is wider due to varying size in bootstraps.)
## 
##    Assemblage        SC   m        Method Order.q        qD    qD.LCL    qD.UCL
## 1   Quadrat.1 0.9925382 132      Observed       0 10.000000  7.402640 12.597360
## 2   Quadrat.2 0.9879180 132   Rarefaction       0 12.857628 11.940869 13.774386
## 3   Quadrat.2 1.0000000 444      Observed       0 14.000000 12.644325 15.355675
## 4   Quadrat.3 0.9843032 132   Rarefaction       0 10.197489  6.522296 13.872683
## 5   Quadrat.3 0.9887892 444   Rarefaction       0 13.977826  7.899006 20.056645
## 6   Quadrat.3 0.9888018 446      Observed       0 14.000000  7.908352 20.091648
## 7   Quadrat.3 0.9888144 447 Extrapolation       0 14.011198  7.911124 20.111272
## 8   Quadrat.4 0.9854327 132   Rarefaction       0 10.032058  4.687523 15.376593
## 9   Quadrat.4 0.9897959 292   Rarefaction       0 11.982627  4.961859 19.003394
## 10  Quadrat.4 0.9898191 294      Observed       0 12.000000  4.969149 19.030851
## 11  Quadrat.4 0.9898422 295 Extrapolation       0 12.010181  4.972842 19.047520
## 12  Quadrat.5 0.9554301 132   Rarefaction       0 15.397332 12.360994 18.433670
## 13  Quadrat.5 0.9891697 275   Rarefaction       0 18.983073 12.533768 25.432378
## 14  Quadrat.5 0.9892989 277      Observed       0 19.000000 12.514948 25.485052
## 15  Quadrat.5 0.9894266 278 Extrapolation       0 19.010701 12.488502 25.532900
## 16  Quadrat.6 0.9855357 132   Rarefaction       0  6.909497  3.821036  9.997958
## 17  Quadrat.6 0.9935345 462   Rarefaction       0  9.990245  4.243611 15.736878
## 18  Quadrat.6 0.9935438 464      Observed       0 10.000000  4.249511 15.750489
## 19  Quadrat.6 0.9935531 465 Extrapolation       0 10.006456  4.251998 15.760915
## 20  Quadrat.7 0.9721341 132   Rarefaction       0 11.415039  9.269954 13.560123
## 21  Quadrat.7 0.9908537 327   Rarefaction       0 14.988227  9.119147 20.857308
## 22  Quadrat.7 0.9909460 328      Observed       0 15.000000  9.098069 20.901931
## 23  Quadrat.7 0.9910373 329 Extrapolation       0 15.009054  9.073873 20.944235
## 24  Quadrat.8 0.9827498 132   Rarefaction       0 11.777809 10.430121 13.125497
## 25  Quadrat.8 0.9976636 427   Rarefaction       0 13.996602 11.116574 16.876630
## 26  Quadrat.8 0.9976852 428      Observed       0 14.000000 11.115713 16.884287
## 27  Quadrat.8 0.9977067 429 Extrapolation       0 14.002315 11.113356 16.891273
## 28  Quadrat.9 0.9512195  80   Rarefaction       0 15.914285 11.594660 20.233910
## 29  Quadrat.9 0.9526800  82      Observed       0 16.000000 11.607692 20.392308
## 30  Quadrat.9 0.9540968  83 Extrapolation       0 16.047320 11.577019 20.517621
## 31  Quadrat.9 0.9896492 132 Extrapolation       0 17.234773 10.258310 24.211235
## 32 Quadrat.10 0.9853580 132   Rarefaction       0  8.766625  6.787453 10.745797
## 33 Quadrat.10 0.9920000 248   Rarefaction       0  9.984021  7.204454 12.763587
## 34 Quadrat.10 0.9920320 250      Observed       0 10.000000  7.216186 12.783814
## 35 Quadrat.10 0.9920639 251 Extrapolation       0 10.007968  7.218951 12.796985
## 36 Quadrat.11 0.9975639 132   Rarefaction       0 12.974684 11.619708 14.329660
## 37 Quadrat.11 1.0000000 155      Observed       0 13.000000 11.545333 14.454667
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$coverage_based to view complete output.
## 
## $AsyEst: asymptotic diversity estimates along with related statistics.
##    Assemblage         Diversity  Observed Estimator      s.e.       LCL
## 1   Quadrat.1  Species richness 10.000000 10.496212 1.8691515 10.000000
## 2   Quadrat.1 Shannon diversity  4.909318  5.102191 0.4998833  4.122438
## 3   Quadrat.1 Simpson diversity  3.293762  3.352462 0.4035868  2.561447
## 4  Quadrat.10  Species richness 10.000000 11.992000 2.7977828 10.000000
## 5  Quadrat.10 Shannon diversity  4.373262  4.478543 0.2817111  3.926399
## 6  Quadrat.10 Simpson diversity  3.435954  3.469900 0.1861034  3.105144
## 7  Quadrat.11  Species richness 13.000000 13.000000 1.0546081 13.000000
## 8  Quadrat.11 Shannon diversity  8.680817  9.034744 0.6463805  7.767861
## 9  Quadrat.11 Simpson diversity  6.602088  6.851320 0.7451218  5.390909
## 10  Quadrat.2  Species richness 14.000000 14.000000 0.4591428 14.000000
## 11  Quadrat.2 Shannon diversity  9.824330  9.972034 0.3367003  9.312113
## 12  Quadrat.2 Simpson diversity  8.348268  8.489081 0.3817399  7.740884
## 13  Quadrat.3  Species richness 14.000000 23.977578 6.2978614 14.000000
## 14  Quadrat.3 Shannon diversity  5.827336  5.980165 0.2944504  5.403053
## 15  Quadrat.3 Simpson diversity  4.475856  4.511092 0.2105740  4.098374
## 16  Quadrat.4  Species richness 12.000000 16.484694 3.6699459 12.000000
## 17  Quadrat.4 Shannon diversity  6.330739  6.508285 0.3982936  5.727643
## 18  Quadrat.4 Simpson diversity  4.762839  4.824801 0.3537318  4.131500
## 19  Quadrat.5  Species richness 19.000000 19.896751 5.8378054 19.000000
## 20  Quadrat.5 Shannon diversity  5.076505  5.269242 0.4732894  4.341611
## 21  Quadrat.5 Simpson diversity  2.755773  2.773417 0.2361072  2.310655
## 22  Quadrat.6  Species richness 10.000000 14.490302 5.5322504 10.000000
## 23  Quadrat.6 Shannon diversity  4.290540  4.357068 0.1792756  4.005695
## 24  Quadrat.6 Simpson diversity  3.687712  3.709244 0.1355992  3.443475
## 25  Quadrat.7  Species richness 15.000000 15.897256 4.7862605 15.000000
## 26  Quadrat.7 Shannon diversity  6.415378  6.577376 0.3748946  5.842596
## 27  Quadrat.7 Simpson diversity  4.795151  4.851456 0.3401092  4.184855
## 28  Quadrat.8  Species richness 14.000000 14.249416 1.8205193 14.000000
## 29  Quadrat.8 Shannon diversity  6.244415  6.346618 0.3241424  5.711310
## 30  Quadrat.8 Simpson diversity  4.350337  4.384741 0.2504636  3.893841
## 31  Quadrat.9  Species richness 16.000000 17.580488 4.4956766 16.000000
## 32  Quadrat.9 Shannon diversity  8.450869  9.469144 1.2949158  6.931156
## 33  Quadrat.9 Simpson diversity  5.475570  5.795812 0.9288472  3.975305
##          UCL
## 1  14.159682
## 2   6.081944
## 3   4.143478
## 4  17.475554
## 5   5.030686
## 6   3.834656
## 7  15.066994
## 8  10.301626
## 9   8.311732
## 10 14.899903
## 11 10.631954
## 12  9.237277
## 13 36.321160
## 14  6.557277
## 15  4.923809
## 16 23.677656
## 17  7.288926
## 18  5.518103
## 19 31.338639
## 20  6.196872
## 21  3.236178
## 22 25.333313
## 23  4.708442
## 24  3.975014
## 25 25.278154
## 26  7.312156
## 27  5.518058
## 28 17.817568
## 29  6.981925
## 30  4.875641
## 31 26.391852
## 32 12.007133
## 33  7.616318
Barrow_Datam_1 <- iNEXT(Barrow_Nos, q=c(0,1,2), datatype= "abundance", size = m)

Barrow_Datam_1
## Compare 11 assemblages with Hill number order q = 0, 1, 2.
## $class: iNEXT
## 
## $DataInfo: basic data information
##    Assemblage   n S.obs     SC f1 f2 f3 f4 f5 f6 f7 f8 f9 f10
## 1   Quadrat.1 132    10 0.9925  1  1  1  3  0  0  0  1  0   0
## 2   Quadrat.2 444    14 1.0000  0  1  1  0  1  1  0  0  0   0
## 3   Quadrat.3 446    14 0.9888  5  0  0  1  0  0  0  0  0   1
## 4   Quadrat.4 294    12 0.9898  3  1  0  0  0  0  0  1  1   0
## 5   Quadrat.5 277    19 0.9893  3  5  4  1  0  1  0  1  0   0
## 6   Quadrat.6 464    10 0.9935  3  1  1  0  0  0  0  1  0   0
## 7   Quadrat.7 328    15 0.9909  3  5  0  0  0  0  0  0  0   2
## 8   Quadrat.8 428    14 0.9977  1  2  1  0  1  0  1  0  0   0
## 9   Quadrat.9  82    16 0.9527  4  5  2  1  1  1  0  0  0   0
## 10 Quadrat.10 250    10 0.9920  2  1  0  0  3  0  0  0  0   1
## 11 Quadrat.11 155    13 1.0000  0  1  1  3  1  2  0  0  0   0
## 
## $iNextEst: diversity estimates with rarefied and extrapolated samples.
## $size_based (LCL and UCL are obtained for fixed size.)
## 
##     Assemblage   m        Method Order.q        qD    qD.LCL    qD.UCL
## 1    Quadrat.1 132      Observed       0 10.000000  8.665390 11.334610
## 2    Quadrat.1 132      Observed       1  4.909318  4.011889  5.806747
## 3    Quadrat.1 132      Observed       2  3.293762  2.539686  4.047837
## 4    Quadrat.2 132   Rarefaction       0 12.857628 12.079818 13.635437
## 5    Quadrat.2 443   Rarefaction       0 14.000000 12.967740 15.032260
## 6    Quadrat.2 444      Observed       0 14.000000 12.966671 15.033329
## 7    Quadrat.2 445 Extrapolation       0 14.000000 12.965960 15.034040
## 8    Quadrat.2 132   Rarefaction       1  9.459158  8.965474  9.952842
## 9    Quadrat.2 443   Rarefaction       1  9.823991  9.299929 10.348052
## 10   Quadrat.2 444      Observed       1  9.824330  9.300242 10.348419
## 11   Quadrat.2 445 Extrapolation       1  9.824669  9.300554 10.348785
## 12   Quadrat.2 132   Rarefaction       2  8.033307  7.501064  8.565551
## 13   Quadrat.2 443   Rarefaction       2  8.347955  7.770813  8.925098
## 14   Quadrat.2 444      Observed       2  8.348268  7.771080  8.925456
## 15   Quadrat.2 445 Extrapolation       2  8.348579  7.771346  8.925813
## 16   Quadrat.3 132   Rarefaction       0 10.197489  9.079604 11.315374
## 17   Quadrat.3 445   Rarefaction       0 13.988789 11.040208 16.937371
## 18   Quadrat.3 446      Observed       0 14.000000 11.046353 16.953647
## 19   Quadrat.3 447 Extrapolation       0 14.011198 11.052297 16.970099
## 20   Quadrat.3 132   Rarefaction       1  5.617833  5.162818  6.072849
## 21   Quadrat.3 445   Rarefaction       1  5.827069  5.334727  6.319411
## 22   Quadrat.3 446      Observed       1  5.827336  5.334941  6.319732
## 23   Quadrat.3 447 Extrapolation       1  5.827603  5.335154  6.320052
## 24   Quadrat.3 132   Rarefaction       2  4.394210  4.045582  4.742837
## 25   Quadrat.3 445   Rarefaction       2  4.475778  4.112258  4.839298
## 26   Quadrat.3 446      Observed       2  4.475856  4.112322  4.839391
## 27   Quadrat.3 447 Extrapolation       2  4.475934  4.112385  4.839483
## 28   Quadrat.4 132   Rarefaction       0 10.032058  8.729494 11.334621
## 29   Quadrat.4 293   Rarefaction       0 11.989796  9.615109 14.364483
## 30   Quadrat.4 294      Observed       0 12.000000  9.618891 14.381109
## 31   Quadrat.4 295 Extrapolation       0 12.010181  9.621778 14.398584
## 32   Quadrat.4 132   Rarefaction       1  6.166823  5.547878  6.785767
## 33   Quadrat.4 293   Rarefaction       1  6.330211  5.685242  6.975180
## 34   Quadrat.4 294      Observed       1  6.330739  5.685696  6.975782
## 35   Quadrat.4 295 Extrapolation       1  6.331265  5.686149  6.976382
## 36   Quadrat.4 132   Rarefaction       2  4.688936  4.069920  5.307951
## 37   Quadrat.4 293   Rarefaction       2  4.762630  4.121276  5.403984
## 38   Quadrat.4 294      Observed       2  4.762839  4.121421  5.404257
## 39   Quadrat.4 295 Extrapolation       2  4.763046  4.121565  5.404527
## 40   Quadrat.5 132   Rarefaction       0 15.397332 13.187256 17.607409
## 41   Quadrat.5 276   Rarefaction       0 18.989170 15.802717 22.175622
## 42   Quadrat.5 277      Observed       0 19.000000 15.807322 22.192678
## 43   Quadrat.5 278 Extrapolation       0 19.010701 15.811796 22.209606
## 44   Quadrat.5 132   Rarefaction       1  4.853180  4.101994  5.604365
## 45   Quadrat.5 276   Rarefaction       1  5.075744  4.275580  5.875908
## 46   Quadrat.5 277      Observed       1  5.076505  4.276168  5.876843
## 47   Quadrat.5 278 Extrapolation       1  5.077264  4.276752  5.877775
## 48   Quadrat.5 132   Rarefaction       2  2.736650  2.359698  3.113601
## 49   Quadrat.5 276   Rarefaction       2  2.755710  2.371861  3.139559
## 50   Quadrat.5 277      Observed       2  2.755773  2.371902  3.139645
## 51   Quadrat.5 278 Extrapolation       2  2.755837  2.371942  3.139731
## 52   Quadrat.6 132   Rarefaction       0  6.909497  5.465106  8.353888
## 53   Quadrat.6 463   Rarefaction       0  9.993534  6.663875 13.323194
## 54   Quadrat.6 464      Observed       0 10.000000  6.666062 13.333938
## 55   Quadrat.6 465 Extrapolation       0 10.006456  6.667881 13.345031
## 56   Quadrat.6 132   Rarefaction       1  4.179489  3.843997  4.514980
## 57   Quadrat.6 463   Rarefaction       1  4.290416  3.912103  4.668729
## 58   Quadrat.6 464      Observed       1  4.290540  3.912175  4.668905
## 59   Quadrat.6 465 Extrapolation       1  4.290664  3.912248  4.669080
## 60   Quadrat.6 132   Rarefaction       2  3.634645  3.377637  3.891653
## 61   Quadrat.6 463   Rarefaction       2  3.687666  3.421757  3.953574
## 62   Quadrat.6 464      Observed       2  3.687712  3.421795  3.953628
## 63   Quadrat.6 465 Extrapolation       2  3.687758  3.421834  3.953682
## 64   Quadrat.7 132   Rarefaction       0 11.415039  9.918963 12.911114
## 65   Quadrat.7 327   Rarefaction       0 14.990854 12.628280 17.353427
## 66   Quadrat.7 328      Observed       0 15.000000 12.632098 17.367902
## 67   Quadrat.7 329 Extrapolation       0 15.009054 12.635759 17.382350
## 68   Quadrat.7 132   Rarefaction       1  6.178858  5.604450  6.753266
## 69   Quadrat.7 327   Rarefaction       1  6.414833  5.807262  7.022404
## 70   Quadrat.7 328      Observed       1  6.415378  5.807752  7.023005
## 71   Quadrat.7 329 Extrapolation       1  6.415922  5.808240  7.023604
## 72   Quadrat.7 132   Rarefaction       2  4.713915  4.179619  5.248212
## 73   Quadrat.7 327   Rarefaction       2  4.794980  4.240045  5.349915
## 74   Quadrat.7 328      Observed       2  4.795151  4.240172  5.350129
## 75   Quadrat.7 329 Extrapolation       2  4.795320  4.240298  5.350342
## 76   Quadrat.8 132   Rarefaction       0 11.777810 10.766701 12.788919
## 77   Quadrat.8 427   Rarefaction       0 13.997664 12.431569 15.563758
## 78   Quadrat.8 428      Observed       0 14.000000 12.431529 15.568471
## 79   Quadrat.8 429 Extrapolation       0 14.002315 12.431465 15.573164
## 80   Quadrat.8 132   Rarefaction       1  6.011288  5.258562  6.764015
## 81   Quadrat.8 427   Rarefaction       1  6.244162  5.448608  7.039716
## 82   Quadrat.8 428      Observed       1  6.244415  5.448812  7.040019
## 83   Quadrat.8 429 Extrapolation       1  6.244668  5.449014  7.040322
## 84   Quadrat.8 132   Rarefaction       2  4.275118  3.694910  4.855327
## 85   Quadrat.8 427   Rarefaction       2  4.350257  3.745391  4.955124
## 86   Quadrat.8 428      Observed       2  4.350337  3.745444  4.955230
## 87   Quadrat.8 429 Extrapolation       2  4.350417  3.745497  4.955336
## 88   Quadrat.9  81   Rarefaction       0 15.951220 13.462258 18.440181
## 89   Quadrat.9  82      Observed       0 16.000000 13.495650 18.504350
## 90   Quadrat.9  83 Extrapolation       0 16.047320 13.527505 18.567135
## 91   Quadrat.9 132 Extrapolation       0 17.234773 13.812160 20.657386
## 92   Quadrat.9  81   Rarefaction       1  8.437735  6.630997 10.244473
## 93   Quadrat.9  82      Observed       1  8.450869  6.640626 10.261111
## 94   Quadrat.9  83 Extrapolation       1  8.463836  6.650129 10.277542
## 95   Quadrat.9 132 Extrapolation       1  8.932639  6.990328 10.874951
## 96   Quadrat.9  81   Rarefaction       2  5.471837  4.111141  6.832534
## 97   Quadrat.9  82      Observed       2  5.475570  4.112849  6.838291
## 98   Quadrat.9  83 Extrapolation       2  5.479218  4.114518  6.843918
## 99   Quadrat.9 132 Extrapolation       2  5.592621  4.165652  7.019590
## 100 Quadrat.10 132   Rarefaction       0  8.766625  7.102050 10.431200
## 101 Quadrat.10 249   Rarefaction       0  9.992000  7.818389 12.165611
## 102 Quadrat.10 250      Observed       0 10.000000  7.822151 12.177849
## 103 Quadrat.10 251 Extrapolation       0 10.007968  7.825593 12.190343
## 104 Quadrat.10 132   Rarefaction       1  4.289710  3.748223  4.831197
## 105 Quadrat.10 249   Rarefaction       1  4.372858  3.810741  4.934974
## 106 Quadrat.10 250      Observed       1  4.373262  3.811049  4.935474
## 107 Quadrat.10 251 Extrapolation       1  4.373664  3.811356  4.935971
## 108 Quadrat.10 132   Rarefaction       2  3.406166  3.030756  3.781576
## 109 Quadrat.10 249   Rarefaction       2  3.435819  3.052549  3.819088
## 110 Quadrat.10 250      Observed       2  3.435954  3.052648  3.819259
## 111 Quadrat.10 251 Extrapolation       2  3.436088  3.052747  3.819429
## 112 Quadrat.11 132   Rarefaction       0 12.974684 12.011460 13.937908
## 113 Quadrat.11 154   Rarefaction       0 13.000000 12.066180 13.933820
## 114 Quadrat.11 155      Observed       0 13.000000 12.066311 13.933689
## 115 Quadrat.11 156 Extrapolation       0 13.000000 12.066836 13.933164
## 116 Quadrat.11 132   Rarefaction       1  8.616984  7.599324  9.634644
## 117 Quadrat.11 154   Rarefaction       1  8.678467  7.653531  9.703403
## 118 Quadrat.11 155      Observed       1  8.680817  7.655612  9.706023
## 119 Quadrat.11 156 Extrapolation       1  8.683151  7.657678  9.708624
## 120 Quadrat.11 132   Rarefaction       2  6.560505  5.595211  7.525799
## 121 Quadrat.11 154   Rarefaction       2  6.600529  5.622661  7.578398
## 122 Quadrat.11 155      Observed       2  6.602088  5.623728  7.580449
## 123 Quadrat.11 156 Extrapolation       2  6.603628  5.624783  7.582474
##            SC    SC.LCL    SC.UCL
## 1   0.9925382 0.9748464 1.0000000
## 2   0.9925382 0.9748464 1.0000000
## 3   0.9925382 0.9748464 1.0000000
## 4   0.9879180 0.9841687 0.9916673
## 5   1.0000000 0.9970207 1.0000000
## 6   1.0000000 0.9971318 1.0000000
## 7   1.0000000 0.9971451 1.0000000
## 8   0.9879180 0.9841687 0.9916673
## 9   1.0000000 0.9970207 1.0000000
## 10  1.0000000 0.9971318 1.0000000
## 11  1.0000000 0.9971451 1.0000000
## 12  0.9879180 0.9841687 0.9916673
## 13  1.0000000 0.9970207 1.0000000
## 14  1.0000000 0.9971318 1.0000000
## 15  1.0000000 0.9971451 1.0000000
## 16  0.9843032 0.9760722 0.9925341
## 17  0.9887892 0.9825107 0.9950678
## 18  0.9888018 0.9823581 0.9952455
## 19  0.9888144 0.9823686 0.9952602
## 20  0.9843032 0.9760722 0.9925341
## 21  0.9887892 0.9825107 0.9950678
## 22  0.9888018 0.9823581 0.9952455
## 23  0.9888144 0.9823686 0.9952602
## 24  0.9843032 0.9760722 0.9925341
## 25  0.9887892 0.9825107 0.9950678
## 26  0.9888018 0.9823581 0.9952455
## 27  0.9888144 0.9823686 0.9952602
## 28  0.9854327 0.9765700 0.9942953
## 29  0.9897959 0.9813580 0.9982339
## 30  0.9898191 0.9807111 0.9989271
## 31  0.9898422 0.9807371 0.9989473
## 32  0.9854327 0.9765700 0.9942953
## 33  0.9897959 0.9813580 0.9982339
## 34  0.9898191 0.9807111 0.9989271
## 35  0.9898422 0.9807371 0.9989473
## 36  0.9854327 0.9765700 0.9942953
## 37  0.9897959 0.9813580 0.9982339
## 38  0.9898191 0.9807111 0.9989271
## 39  0.9898422 0.9807371 0.9989473
## 40  0.9554301 0.9422194 0.9686409
## 41  0.9891697 0.9779492 1.0000000
## 42  0.9892989 0.9780623 1.0000000
## 43  0.9894266 0.9781747 1.0000000
## 44  0.9554301 0.9422194 0.9686409
## 45  0.9891697 0.9779492 1.0000000
## 46  0.9892989 0.9780623 1.0000000
## 47  0.9894266 0.9781747 1.0000000
## 48  0.9554301 0.9422194 0.9686409
## 49  0.9891697 0.9779492 1.0000000
## 50  0.9892989 0.9780623 1.0000000
## 51  0.9894266 0.9781747 1.0000000
## 52  0.9855357 0.9768510 0.9942205
## 53  0.9935345 0.9880962 0.9989728
## 54  0.9935438 0.9876986 0.9993890
## 55  0.9935531 0.9877131 0.9993930
## 56  0.9855357 0.9768510 0.9942205
## 57  0.9935345 0.9880962 0.9989728
## 58  0.9935438 0.9876986 0.9993890
## 59  0.9935531 0.9877131 0.9993930
## 60  0.9855357 0.9768510 0.9942205
## 61  0.9935345 0.9880962 0.9989728
## 62  0.9935438 0.9876986 0.9993890
## 63  0.9935531 0.9877131 0.9993930
## 64  0.9721341 0.9639884 0.9802798
## 65  0.9908537 0.9804483 1.0000000
## 66  0.9909460 0.9803795 1.0000000
## 67  0.9910373 0.9804677 1.0000000
## 68  0.9721341 0.9639884 0.9802798
## 69  0.9908537 0.9804483 1.0000000
## 70  0.9909460 0.9803795 1.0000000
## 71  0.9910373 0.9804677 1.0000000
## 72  0.9721341 0.9639884 0.9802798
## 73  0.9908537 0.9804483 1.0000000
## 74  0.9909460 0.9803795 1.0000000
## 75  0.9910373 0.9804677 1.0000000
## 76  0.9827498 0.9783242 0.9871754
## 77  0.9976636 0.9936639 1.0000000
## 78  0.9976852 0.9936893 1.0000000
## 79  0.9977067 0.9937145 1.0000000
## 80  0.9827498 0.9783242 0.9871754
## 81  0.9976636 0.9936639 1.0000000
## 82  0.9976852 0.9936893 1.0000000
## 83  0.9977067 0.9937145 1.0000000
## 84  0.9827498 0.9783242 0.9871754
## 85  0.9976636 0.9936639 1.0000000
## 86  0.9976852 0.9936893 1.0000000
## 87  0.9977067 0.9937145 1.0000000
## 88  0.9512195 0.9169511 0.9854879
## 89  0.9526800 0.9183455 0.9870145
## 90  0.9540968 0.9196922 0.9885014
## 91  0.9896492 0.9552209 1.0000000
## 92  0.9512195 0.9169511 0.9854879
## 93  0.9526800 0.9183455 0.9870145
## 94  0.9540968 0.9196922 0.9885014
## 95  0.9896492 0.9552209 1.0000000
## 96  0.9512195 0.9169511 0.9854879
## 97  0.9526800 0.9183455 0.9870145
## 98  0.9540968 0.9196922 0.9885014
## 99  0.9896492 0.9552209 1.0000000
## 100 0.9853580 0.9767609 0.9939552
## 101 0.9920000 0.9840663 0.9999337
## 102 0.9920320 0.9834940 1.0000000
## 103 0.9920639 0.9835538 1.0000000
## 104 0.9853580 0.9767609 0.9939552
## 105 0.9920000 0.9840663 0.9999337
## 106 0.9920320 0.9834940 1.0000000
## 107 0.9920639 0.9835538 1.0000000
## 108 0.9853580 0.9767609 0.9939552
## 109 0.9920000 0.9840663 0.9999337
## 110 0.9920320 0.9834940 1.0000000
## 111 0.9920639 0.9835538 1.0000000
## 112 0.9975639 0.9876663 1.0000000
## 113 1.0000000 0.9889203 1.0000000
## 114 1.0000000 0.9887954 1.0000000
## 115 1.0000000 0.9889015 1.0000000
## 116 0.9975639 0.9876663 1.0000000
## 117 1.0000000 0.9889203 1.0000000
## 118 1.0000000 0.9887954 1.0000000
## 119 1.0000000 0.9889015 1.0000000
## 120 0.9975639 0.9876663 1.0000000
## 121 1.0000000 0.9889203 1.0000000
## 122 1.0000000 0.9887954 1.0000000
## 123 1.0000000 0.9889015 1.0000000
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$size_based to view complete output.
## 
## $coverage_based (LCL and UCL are obtained for fixed coverage; interval length is wider due to varying size in bootstraps.)
## 
##     Assemblage        SC   m        Method Order.q        qD    qD.LCL
## 1    Quadrat.1 0.9925382 132      Observed       0 10.000000  6.494862
## 2    Quadrat.1 0.9925382 132      Observed       1  4.909318  4.053822
## 3    Quadrat.1 0.9925382 132      Observed       2  3.293762  2.546189
## 4    Quadrat.2 0.9879180 132   Rarefaction       0 12.857628 11.942798
## 5    Quadrat.2 1.0000000 444      Observed       0 14.000000 12.665121
## 6    Quadrat.2 0.9879180 132   Rarefaction       1  9.459158  8.954808
## 7    Quadrat.2 1.0000000 444      Observed       1  9.824330  9.304454
## 8    Quadrat.2 0.9879180 132   Rarefaction       2  8.033307  7.502999
## 9    Quadrat.2 1.0000000 444      Observed       2  8.348268  7.769286
## 10   Quadrat.3 0.9843032 132   Rarefaction       0 10.197489  7.535066
## 11   Quadrat.3 0.9887892 444   Rarefaction       0 13.977826  9.480468
## 12   Quadrat.3 0.9888018 446      Observed       0 14.000000  9.494062
## 13   Quadrat.3 0.9888144 447 Extrapolation       0 14.011198  9.497471
## 14   Quadrat.3 0.9843032 132   Rarefaction       1  5.617833  5.108611
## 15   Quadrat.3 0.9887892 444   Rarefaction       1  5.826806  5.280630
## 16   Quadrat.3 0.9888018 446      Observed       1  5.827336  5.281069
## 17   Quadrat.3 0.9888144 447 Extrapolation       1  5.827603  5.281242
## 18   Quadrat.3 0.9843032 132   Rarefaction       2  4.394210  4.035749
## 19   Quadrat.3 0.9887892 444   Rarefaction       2  4.475700  4.103205
## 20   Quadrat.3 0.9888018 446      Observed       2  4.475856  4.103310
## 21   Quadrat.3 0.9888144 447 Extrapolation       2  4.475934  4.103363
## 22   Quadrat.4 0.9854327 132   Rarefaction       0 10.032058  6.457513
## 23   Quadrat.4 0.9897959 292   Rarefaction       0 11.982627  6.773049
## 24   Quadrat.4 0.9898191 294      Observed       0 12.000000  6.781388
## 25   Quadrat.4 0.9898422 295 Extrapolation       0 12.010181  6.784844
## 26   Quadrat.4 0.9854327 132   Rarefaction       1  6.166823  5.480603
## 27   Quadrat.4 0.9897959 292   Rarefaction       1  6.329838  5.633728
## 28   Quadrat.4 0.9898191 294      Observed       1  6.330739  5.634505
## 29   Quadrat.4 0.9898422 295 Extrapolation       1  6.331265  5.635039
## 30   Quadrat.4 0.9854327 132   Rarefaction       2  4.688936  4.074825
## 31   Quadrat.4 0.9897959 292   Rarefaction       2  4.762483  4.137387
## 32   Quadrat.4 0.9898191 294      Observed       2  4.762839  4.137666
## 33   Quadrat.4 0.9898422 295 Extrapolation       2  4.763046  4.137821
## 34   Quadrat.5 0.9554301 132   Rarefaction       0 15.397332 12.165160
## 35   Quadrat.5 0.9891697 275   Rarefaction       0 18.983073 12.654910
## 36   Quadrat.5 0.9892989 277      Observed       0 19.000000 12.648480
## 37   Quadrat.5 0.9894266 278 Extrapolation       0 19.010701 12.633689
## 38   Quadrat.5 0.9554301 132   Rarefaction       1  4.853180  4.086602
## 39   Quadrat.5 0.9891697 275   Rarefaction       1  5.075318  4.257287
## 40   Quadrat.5 0.9892989 277      Observed       1  5.076505  4.257920
## 41   Quadrat.5 0.9894266 278 Extrapolation       1  5.077264  4.258231
## 42   Quadrat.5 0.9554301 132   Rarefaction       2  2.736650  2.359655
## 43   Quadrat.5 0.9891697 275   Rarefaction       2  2.755674  2.370244
## 44   Quadrat.5 0.9892989 277      Observed       2  2.755773  2.370260
## 45   Quadrat.5 0.9894266 278 Extrapolation       2  2.755837  2.370256
## 46   Quadrat.6 0.9855357 132   Rarefaction       0  6.909497  3.646153
## 47   Quadrat.6 0.9935345 462   Rarefaction       0  9.990245  4.354557
## 48   Quadrat.6 0.9935438 464      Observed       0 10.000000  4.360899
## 49   Quadrat.6 0.9935531 465 Extrapolation       0 10.006456  4.364296
## 50   Quadrat.6 0.9855357 132   Rarefaction       1  4.179489  3.717591
## 51   Quadrat.6 0.9935345 462   Rarefaction       1  4.290353  3.874390
## 52   Quadrat.6 0.9935438 464      Observed       1  4.290540  3.874607
## 53   Quadrat.6 0.9935531 465 Extrapolation       1  4.290664  3.874723
## 54   Quadrat.6 0.9855357 132   Rarefaction       2  3.634645  3.310332
## 55   Quadrat.6 0.9935345 462   Rarefaction       2  3.687642  3.407236
## 56   Quadrat.6 0.9935438 464      Observed       2  3.687712  3.407333
## 57   Quadrat.6 0.9935531 465 Extrapolation       2  3.687758  3.407386
## 58   Quadrat.7 0.9721341 132   Rarefaction       0 11.415039  9.258961
## 59   Quadrat.7 0.9908537 327   Rarefaction       0 14.988227  5.946694
## 60   Quadrat.7 0.9909460 328      Observed       0 15.000000  5.920727
## 61   Quadrat.7 0.9910373 329 Extrapolation       0 15.009054  5.891843
## 62   Quadrat.7 0.9721341 132   Rarefaction       1  6.178858  5.565777
## 63   Quadrat.7 0.9908537 327   Rarefaction       1  6.414677  5.789798
## 64   Quadrat.7 0.9909460 328      Observed       1  6.415378  5.790580
## 65   Quadrat.7 0.9910373 329 Extrapolation       1  6.415922  5.791180
## 66   Quadrat.7 0.9721341 132   Rarefaction       2  4.713915  4.180896
## 67   Quadrat.7 0.9908537 327   Rarefaction       2  4.794932  4.233696
## 68   Quadrat.7 0.9909460 328      Observed       2  4.795151  4.233897
## 69   Quadrat.7 0.9910373 329 Extrapolation       2  4.795320  4.234048
## 70   Quadrat.8 0.9827498 132   Rarefaction       0 11.777809 10.511050
## 71   Quadrat.8 0.9976636 427   Rarefaction       0 13.996602 10.756846
## 72   Quadrat.8 0.9976852 428      Observed       0 14.000000 10.754219
## 73   Quadrat.8 0.9977067 429 Extrapolation       0 14.002315 10.750368
## 74   Quadrat.8 0.9827498 132   Rarefaction       1  6.011288  5.254900
## 75   Quadrat.8 0.9976636 427   Rarefaction       1  6.244048  5.436451
## 76   Quadrat.8 0.9976852 428      Observed       1  6.244415  5.436718
## 77   Quadrat.8 0.9977067 429 Extrapolation       1  6.244668  5.436902
## 78   Quadrat.8 0.9827498 132   Rarefaction       2  4.275118  3.695621
## 79   Quadrat.8 0.9976636 427   Rarefaction       2  4.350221  3.740286
## 80   Quadrat.8 0.9976852 428      Observed       2  4.350337  3.740363
## 81   Quadrat.8 0.9977067 429 Extrapolation       2  4.350417  3.740414
## 82   Quadrat.9 0.9512195  80   Rarefaction       0 15.914285 10.811821
## 83   Quadrat.9 0.9526800  82      Observed       0 16.000000 10.787799
## 84   Quadrat.9 0.9540968  83 Extrapolation       0 16.047320 10.717963
## 85   Quadrat.9 0.9896492 132 Extrapolation       0 17.234773  8.366420
## 86   Quadrat.9 0.9512195  80   Rarefaction       1  8.427859  6.582197
## 87   Quadrat.9 0.9526800  82      Observed       1  8.450869  6.597566
## 88   Quadrat.9 0.9540968  83 Extrapolation       1  8.463836  6.601186
## 89   Quadrat.9 0.9896492 132 Extrapolation       1  8.932639  6.853697
## 90   Quadrat.9 0.9512195  80   Rarefaction       2  5.469031  4.123833
## 91   Quadrat.9 0.9526800  82      Observed       2  5.475570  4.125773
## 92   Quadrat.9 0.9540968  83 Extrapolation       2  5.479218  4.124598
## 93   Quadrat.9 0.9896492 132 Extrapolation       2  5.592621  4.135452
## 94  Quadrat.10 0.9853580 132   Rarefaction       0  8.766625  6.274553
## 95  Quadrat.10 0.9920000 248   Rarefaction       0  9.984021  6.707618
## 96  Quadrat.10 0.9920320 250      Observed       0 10.000000  6.718151
## 97  Quadrat.10 0.9920639 251 Extrapolation       0 10.007968  6.722967
## 98  Quadrat.10 0.9853580 132   Rarefaction       1  4.289710  3.734222
## 99  Quadrat.10 0.9920000 248   Rarefaction       1  4.372453  3.806640
## 100 Quadrat.10 0.9920320 250      Observed       1  4.373262  3.807331
## 101 Quadrat.10 0.9920639 251 Extrapolation       1  4.373664  3.807701
## 102 Quadrat.10 0.9853580 132   Rarefaction       2  3.406166  3.030573
## 103 Quadrat.10 0.9920000 248   Rarefaction       2  3.435684  3.055177
## 104 Quadrat.10 0.9920320 250      Observed       2  3.435954  3.055404
## 105 Quadrat.10 0.9920639 251 Extrapolation       2  3.436088  3.055521
## 106 Quadrat.11 0.9975639 132   Rarefaction       0 12.974684 11.335537
## 107 Quadrat.11 1.0000000 155      Observed       0 13.000000 11.168154
## 108 Quadrat.11 0.9975639 132   Rarefaction       1  8.616984  7.674816
## 109 Quadrat.11 1.0000000 155      Observed       1  8.680817  7.750206
## 110 Quadrat.11 0.9975639 132   Rarefaction       2  6.560505  5.592670
## 111 Quadrat.11 1.0000000 155      Observed       2  6.602088  5.612058
##        qD.UCL
## 1   13.505138
## 2    5.764814
## 3    4.041335
## 4   13.772457
## 5   15.334879
## 6    9.963509
## 7   10.344207
## 8    8.563616
## 9    8.927250
## 10  12.859913
## 11  18.475184
## 12  18.505938
## 13  18.524926
## 14   6.127055
## 15   6.372983
## 16   6.373603
## 17   6.373964
## 18   4.752671
## 19   4.848196
## 20   4.848402
## 21   4.848506
## 22  13.606603
## 23  17.192205
## 24  17.218612
## 25  17.235518
## 26   6.853043
## 27   7.025949
## 28   7.026972
## 29   7.027492
## 30   5.303046
## 31   5.387579
## 32   5.388012
## 33   5.388272
## 34  18.629504
## 35  25.311236
## 36  25.351520
## 37  25.387714
## 38   5.619758
## 39   5.893348
## 40   5.895091
## 41   5.896296
## 42   3.113645
## 43   3.141104
## 44   3.141287
## 45   3.141417
## 46  10.172841
## 47  15.625932
## 48  15.639101
## 49  15.648617
## 50   4.641387
## 51   4.706316
## 52   4.706473
## 53   4.706605
## 54   3.958957
## 55   3.968048
## 56   3.968091
## 57   3.968130
## 58  13.571116
## 59  24.029761
## 60  24.079273
## 61  24.126265
## 62   6.791940
## 63   7.039556
## 64   7.040177
## 65   7.040664
## 66   5.246935
## 67   5.356168
## 68   5.356404
## 69   5.356591
## 70  13.044569
## 71  17.236358
## 72  17.245781
## 73  17.254261
## 74   6.767677
## 75   7.051644
## 76   7.052113
## 77   7.052434
## 78   4.854615
## 79   4.960156
## 80   4.960311
## 81   4.960419
## 82  21.016749
## 83  21.212201
## 84  21.376677
## 85  26.103125
## 86  10.273520
## 87  10.304172
## 88  10.326485
## 89  11.011582
## 90   6.814229
## 91   6.825367
## 92   6.833837
## 93   7.049790
## 94  11.258697
## 95  13.260423
## 96  13.281849
## 97  13.292969
## 98   4.845198
## 99   4.938267
## 100  4.939193
## 101  4.939626
## 102  3.781758
## 103  3.816190
## 104  3.816504
## 105  3.816655
## 106 14.613831
## 107 14.831846
## 108  9.559152
## 109  9.611428
## 110  7.528340
## 111  7.592119
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$coverage_based to view complete output.
## 
## $AsyEst: asymptotic diversity estimates along with related statistics.
##    Assemblage         Diversity  Observed Estimator      s.e.       LCL
## 1   Quadrat.1  Species richness 10.000000 10.496212 2.0558598 10.000000
## 2   Quadrat.1 Shannon diversity  4.909318  5.102191 0.4668383  4.187205
## 3   Quadrat.1 Simpson diversity  3.293762  3.352462 0.3977532  2.572880
## 4  Quadrat.10  Species richness 10.000000 11.992000 2.6039041 10.000000
## 5  Quadrat.10 Shannon diversity  4.373262  4.478543 0.2960225  3.898349
## 6  Quadrat.10 Simpson diversity  3.435954  3.469900 0.1924747  3.092656
## 7  Quadrat.11  Species richness 13.000000 13.000000 0.9378472 13.000000
## 8  Quadrat.11 Shannon diversity  8.680817  9.034744 0.5850427  7.888081
## 9  Quadrat.11 Simpson diversity  6.602088  6.851320 0.6279722  5.620517
## 10  Quadrat.2  Species richness 14.000000 14.000000 0.5391324 14.000000
## 11  Quadrat.2 Shannon diversity  9.824330  9.972034 0.3254593  9.334145
## 12  Quadrat.2 Simpson diversity  8.348268  8.489081 0.3501623  7.802775
## 13  Quadrat.3  Species richness 14.000000 23.977578 7.7228815 14.000000
## 14  Quadrat.3 Shannon diversity  5.827336  5.980165 0.3133341  5.366041
## 15  Quadrat.3 Simpson diversity  4.475856  4.511092 0.2085841  4.102275
## 16  Quadrat.4  Species richness 12.000000 16.484694 4.3582615 12.000000
## 17  Quadrat.4 Shannon diversity  6.330739  6.508285 0.3441985  5.833668
## 18  Quadrat.4 Simpson diversity  4.762839  4.824801 0.3268264  4.184233
## 19  Quadrat.5  Species richness 19.000000 19.896751 3.5874740 19.000000
## 20  Quadrat.5 Shannon diversity  5.076505  5.269242 0.4398265  4.407198
## 21  Quadrat.5 Simpson diversity  2.755773  2.773417 0.2321950  2.318323
## 22  Quadrat.6  Species richness 10.000000 14.490302 4.7248291 10.000000
## 23  Quadrat.6 Shannon diversity  4.290540  4.357068 0.1687788  4.026268
## 24  Quadrat.6 Simpson diversity  3.687712  3.709244 0.1173906  3.479163
## 25  Quadrat.7  Species richness 15.000000 15.897256 4.0814672 15.000000
## 26  Quadrat.7 Shannon diversity  6.415378  6.577376 0.3305830  5.929446
## 27  Quadrat.7 Simpson diversity  4.795151  4.851456 0.2841119  4.294607
## 28  Quadrat.8  Species richness 14.000000 14.249416 1.8828548 14.000000
## 29  Quadrat.8 Shannon diversity  6.244415  6.346618 0.3576478  5.645641
## 30  Quadrat.8 Simpson diversity  4.350337  4.384741 0.2531719  3.888533
## 31  Quadrat.9  Species richness 16.000000 17.580488 6.3181362 16.000000
## 32  Quadrat.9 Shannon diversity  8.450869  9.469144 1.0658111  7.380193
## 33  Quadrat.9 Simpson diversity  5.475570  5.795812 0.8307439  4.167583
##          UCL
## 1  14.525623
## 2   6.017177
## 3   4.132044
## 4  17.095558
## 5   5.058736
## 6   3.847143
## 7  14.838147
## 8  10.181407
## 9   8.082123
## 10 15.056680
## 11 10.609922
## 12  9.175386
## 13 39.114148
## 14  6.594288
## 15  4.919909
## 16 25.026729
## 17  7.182901
## 18  5.465369
## 19 26.928071
## 20  6.131286
## 21  3.228510
## 22 23.750797
## 23  4.687869
## 24  3.939325
## 25 23.896785
## 26  7.225307
## 27  5.408306
## 28 17.939743
## 29  7.047594
## 30  4.880949
## 31 29.963807
## 32 11.558096
## 33  7.424040
n <- c(444)

Barrow_Datan <- iNEXT(Barrow_Nos, q=c(0), datatype= "abundance", size = n)

Barrow_Datan
## Compare 11 assemblages with Hill number order q = 0.
## $class: iNEXT
## 
## $DataInfo: basic data information
##    Assemblage   n S.obs     SC f1 f2 f3 f4 f5 f6 f7 f8 f9 f10
## 1   Quadrat.1 132    10 0.9925  1  1  1  3  0  0  0  1  0   0
## 2   Quadrat.2 444    14 1.0000  0  1  1  0  1  1  0  0  0   0
## 3   Quadrat.3 446    14 0.9888  5  0  0  1  0  0  0  0  0   1
## 4   Quadrat.4 294    12 0.9898  3  1  0  0  0  0  0  1  1   0
## 5   Quadrat.5 277    19 0.9893  3  5  4  1  0  1  0  1  0   0
## 6   Quadrat.6 464    10 0.9935  3  1  1  0  0  0  0  1  0   0
## 7   Quadrat.7 328    15 0.9909  3  5  0  0  0  0  0  0  0   2
## 8   Quadrat.8 428    14 0.9977  1  2  1  0  1  0  1  0  0   0
## 9   Quadrat.9  82    16 0.9527  4  5  2  1  1  1  0  0  0   0
## 10 Quadrat.10 250    10 0.9920  2  1  0  0  3  0  0  0  0   1
## 11 Quadrat.11 155    13 1.0000  0  1  1  3  1  2  0  0  0   0
## 
## $iNextEst: diversity estimates with rarefied and extrapolated samples.
## $size_based (LCL and UCL are obtained for fixed size.)
## 
##    Assemblage   m        Method Order.q        qD    qD.LCL   qD.UCL        SC
## 1   Quadrat.1 131   Rarefaction       0  9.992424  8.462192 11.52266 0.9924242
## 2   Quadrat.1 132      Observed       0 10.000000  8.464362 11.53564 0.9925382
## 3   Quadrat.1 133 Extrapolation       0 10.007462  8.466425 11.54850 0.9926504
## 4   Quadrat.1 444 Extrapolation       0 10.491821  8.120280 12.86336 0.9999340
## 5   Quadrat.2 444      Observed       0 14.000000 13.045550 14.95445 1.0000000
## 6   Quadrat.3 444   Rarefaction       0 13.977578 10.930789 17.02437 0.9887892
## 7   Quadrat.3 445   Rarefaction       0 13.988789 10.936407 17.04117 0.9887892
## 8   Quadrat.3 446      Observed       0 14.000000 10.942025 17.05797 0.9888018
## 9   Quadrat.3 447 Extrapolation       0 14.011198 10.947270 17.07513 0.9888144
## 10  Quadrat.4 293   Rarefaction       0 11.989796  9.080303 14.89929 0.9897959
## 11  Quadrat.4 294      Observed       0 12.000000  9.082405 14.91759 0.9898191
## 12  Quadrat.4 295 Extrapolation       0 12.010181  9.083561 14.93680 0.9898422
## 13  Quadrat.4 444 Extrapolation       0 13.295523  9.074805 17.51624 0.9927601
## 14  Quadrat.5 276   Rarefaction       0 18.989170 16.453326 21.52501 0.9891697
## 15  Quadrat.5 277      Observed       0 19.000000 16.461757 21.53824 0.9892989
## 16  Quadrat.5 278 Extrapolation       0 19.010701 16.470063 21.55134 0.9894266
## 17  Quadrat.5 444 Extrapolation       0 19.775973 16.654197 22.89775 0.9985587
## 18  Quadrat.6 444   Rarefaction       0  9.868852  7.778443 11.95926 0.9933473
## 19  Quadrat.6 463   Rarefaction       0  9.993534  7.828657 12.15841 0.9935345
## 20  Quadrat.6 464      Observed       0 10.000000  7.831169 12.16883 0.9935438
## 21  Quadrat.6 465 Extrapolation       0 10.006456  7.833670 12.17924 0.9935531
## 22  Quadrat.7 327   Rarefaction       0 14.990854 12.208332 17.77338 0.9908537
## 23  Quadrat.7 328      Observed       0 15.000000 12.212398 17.78760 0.9909460
## 24  Quadrat.7 329 Extrapolation       0 15.009054 12.216376 17.80173 0.9910373
## 25  Quadrat.7 444 Extrapolation       0 15.620576 12.240047 19.00111 0.9972081
## 26  Quadrat.8 427   Rarefaction       0 13.997664 12.517201 15.47813 0.9976636
## 27  Quadrat.8 428      Observed       0 14.000000 12.518406 15.48159 0.9976852
## 28  Quadrat.8 429 Extrapolation       0 14.002315 12.519384 15.48525 0.9977067
## 29  Quadrat.8 444 Extrapolation       0 14.034567 12.530673 15.53846 0.9980060
## 30  Quadrat.9  81   Rarefaction       0 15.951220 13.615849 18.28659 0.9512195
## 31  Quadrat.9  82      Observed       0 16.000000 13.649377 18.35062 0.9526800
## 32  Quadrat.9  83 Extrapolation       0 16.047320 13.681158 18.41348 0.9540968
## 33  Quadrat.9 444 Extrapolation       0 17.580462 10.029930 25.13099 0.9999992
## 34 Quadrat.10 249   Rarefaction       0  9.992000  8.132473 11.85153 0.9920000
## 35 Quadrat.10 250      Observed       0 10.000000  8.135983 11.86402 0.9920320
## 36 Quadrat.10 251 Extrapolation       0 10.007968  8.138555 11.87738 0.9920639
## 37 Quadrat.10 444 Extrapolation       0 11.076621  8.272364 13.88088 0.9963385
## 38 Quadrat.11 154   Rarefaction       0 13.000000 12.209408 13.79059 1.0000000
## 39 Quadrat.11 155      Observed       0 13.000000 12.208055 13.79195 1.0000000
## 40 Quadrat.11 156 Extrapolation       0 13.000000 12.205738 13.79426 1.0000000
## 41 Quadrat.11 444 Extrapolation       0 13.000000 11.463606 14.53639 1.0000000
##       SC.LCL    SC.UCL
## 1  0.9784052 1.0000000
## 2  0.9786607 1.0000000
## 3  0.9789115 1.0000000
## 4  0.9988438 1.0000000
## 5  0.9981470 1.0000000
## 6  0.9822047 0.9953738
## 7  0.9822025 0.9953760
## 8  0.9818928 0.9957108
## 9  0.9819055 0.9957232
## 10 0.9799676 0.9996242
## 11 0.9792335 1.0000000
## 12 0.9792667 1.0000000
## 13 0.9838088 1.0000000
## 14 0.9796648 0.9986745
## 15 0.9797646 0.9988333
## 16 0.9798632 0.9989900
## 17 0.9886435 1.0000000
## 18 0.9877400 0.9989545
## 19 0.9878423 0.9992267
## 20 0.9878525 0.9992350
## 21 0.9878628 0.9992434
## 22 0.9819791 0.9997283
## 23 0.9820706 0.9998213
## 24 0.9821613 0.9999133
## 25 0.9887347 1.0000000
## 26 0.9931987 1.0000000
## 27 0.9931002 1.0000000
## 28 0.9931336 1.0000000
## 29 0.9936038 1.0000000
## 30 0.9167340 0.9857050
## 31 0.9179219 0.9874381
## 32 0.9190891 0.9891045
## 33 0.9927807 1.0000000
## 34 0.9839097 1.0000000
## 35 0.9830774 1.0000000
## 36 0.9831435 1.0000000
## 37 0.9916745 1.0000000
## 38 0.9908281 1.0000000
## 39 0.9908066 1.0000000
## 40 0.9908961 1.0000000
## 41 0.9982449 1.0000000
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$size_based to view complete output.
## 
## $coverage_based (LCL and UCL are obtained for fixed coverage; interval length is wider due to varying size in bootstraps.)
## 
##    Assemblage        SC   m        Method Order.q        qD    qD.LCL   qD.UCL
## 1   Quadrat.1 0.9924242 130   Rarefaction       0  9.986034  7.878237 12.09383
## 2   Quadrat.1 0.9925382 132      Observed       0 10.000000  7.889428 12.11057
## 3   Quadrat.1 0.9926504 133 Extrapolation       0 10.007462  7.891984 12.12294
## 4   Quadrat.1 0.9999340 444 Extrapolation       0 10.491821  8.033400 12.95024
## 5   Quadrat.2 1.0000000 444      Observed       0 14.000000 12.967725 15.03227
## 6   Quadrat.3 0.9887892 444   Rarefaction       0 13.977826  8.037733 19.91792
## 7   Quadrat.3 0.9888018 446      Observed       0 14.000000  8.048366 19.95163
## 8   Quadrat.3 0.9888144 447 Extrapolation       0 14.011198  8.050096 19.97230
## 9   Quadrat.4 0.9897959 292   Rarefaction       0 11.982627  5.473557 18.49170
## 10  Quadrat.4 0.9898191 294      Observed       0 12.000000  5.482565 18.51744
## 11  Quadrat.4 0.9898422 295 Extrapolation       0 12.010181  5.487510 18.53285
## 12  Quadrat.4 0.9927601 444 Extrapolation       0 13.295523  5.662647 20.92840
## 13  Quadrat.5 0.9891697 275   Rarefaction       0 18.983073 14.108438 23.85771
## 14  Quadrat.5 0.9892989 277      Observed       0 19.000000 14.090577 23.90942
## 15  Quadrat.5 0.9894266 278 Extrapolation       0 19.010701 14.064769 23.95663
## 16  Quadrat.5 0.9985587 444 Extrapolation       0 19.775973 11.804434 27.74751
## 17  Quadrat.6 0.9933473 444   Rarefaction       0  9.868852  4.994111 14.74359
## 18  Quadrat.6 0.9935345 462   Rarefaction       0  9.990245  5.100190 14.88030
## 19  Quadrat.6 0.9935438 464      Observed       0 10.000000  5.106674 14.89333
## 20  Quadrat.6 0.9935531 465 Extrapolation       0 10.006456  5.111117 14.90180
## 21  Quadrat.7 0.9908537 327   Rarefaction       0 14.988227  9.805167 20.17129
## 22  Quadrat.7 0.9909460 328      Observed       0 15.000000  9.788049 20.21195
## 23  Quadrat.7 0.9910373 329 Extrapolation       0 15.009054  9.768756 20.24935
## 24  Quadrat.7 0.9972081 444 Extrapolation       0 15.620576  8.202072 23.03908
## 25  Quadrat.8 0.9976636 427   Rarefaction       0 13.996602 11.634223 16.35898
## 26  Quadrat.8 0.9976852 428      Observed       0 14.000000 11.633483 16.36652
## 27  Quadrat.8 0.9977067 429 Extrapolation       0 14.002315 11.631445 16.37318
## 28  Quadrat.8 0.9980060 444 Extrapolation       0 14.034567 11.601417 16.46772
## 29  Quadrat.9 0.9512195  80   Rarefaction       0 15.914285 10.984200 20.84437
## 30  Quadrat.9 0.9526800  82      Observed       0 16.000000 10.977373 21.02263
## 31  Quadrat.9 0.9540968  83 Extrapolation       0 16.047320 10.926888 21.16775
## 32  Quadrat.9 0.9999992 444 Extrapolation       0 17.580462  8.667408 26.49351
## 33 Quadrat.10 0.9920000 248   Rarefaction       0  9.984021  7.248575 12.71947
## 34 Quadrat.10 0.9920320 250      Observed       0 10.000000  7.259720 12.74028
## 35 Quadrat.10 0.9920639 251 Extrapolation       0 10.007968  7.263111 12.75283
## 36 Quadrat.10 0.9963385 444 Extrapolation       0 11.076621  7.695247 14.45799
## 37 Quadrat.11 1.0000000 155      Observed       0 13.000000 11.164605 14.83539
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$coverage_based to view complete output.
## 
## $AsyEst: asymptotic diversity estimates along with related statistics.
##    Assemblage         Diversity  Observed Estimator      s.e.       LCL
## 1   Quadrat.1  Species richness 10.000000 10.496212 1.9505486 10.000000
## 2   Quadrat.1 Shannon diversity  4.909318  5.102191 0.4931145  4.135704
## 3   Quadrat.1 Simpson diversity  3.293762  3.352462 0.4109805  2.546955
## 4  Quadrat.10  Species richness 10.000000 11.992000 2.6548871 10.000000
## 5  Quadrat.10 Shannon diversity  4.373262  4.478543 0.2697741  3.949795
## 6  Quadrat.10 Simpson diversity  3.435954  3.469900 0.1839675  3.109330
## 7  Quadrat.11  Species richness 13.000000 13.000000 0.8461944 13.000000
## 8  Quadrat.11 Shannon diversity  8.680817  9.034744 0.5784235  7.901055
## 9  Quadrat.11 Simpson diversity  6.602088  6.851320 0.6249436  5.626453
## 10  Quadrat.2  Species richness 14.000000 14.000000 0.6338259 14.000000
## 11  Quadrat.2 Shannon diversity  9.824330  9.972034 0.3352138  9.315027
## 12  Quadrat.2 Simpson diversity  8.348268  8.489081 0.3759566  7.752219
## 13  Quadrat.3  Species richness 14.000000 23.977578 5.2095044 14.000000
## 14  Quadrat.3 Shannon diversity  5.827336  5.980165 0.3242031  5.344738
## 15  Quadrat.3 Simpson diversity  4.475856  4.511092 0.2285097  4.063221
## 16  Quadrat.4  Species richness 12.000000 16.484694 3.8729081 12.000000
## 17  Quadrat.4 Shannon diversity  6.330739  6.508285 0.3478543  5.826503
## 18  Quadrat.4 Simpson diversity  4.762839  4.824801 0.3352102  4.167801
## 19  Quadrat.5  Species richness 19.000000 19.896751 3.9641951 19.000000
## 20  Quadrat.5 Shannon diversity  5.076505  5.269242 0.5200404  4.249981
## 21  Quadrat.5 Simpson diversity  2.755773  2.773417 0.2730885  2.238173
## 22  Quadrat.6  Species richness 10.000000 14.490302 5.8931711 10.000000
## 23  Quadrat.6 Shannon diversity  4.290540  4.357068 0.1734094  4.017192
## 24  Quadrat.6 Simpson diversity  3.687712  3.709244 0.1249835  3.464281
## 25  Quadrat.7  Species richness 15.000000 15.897256 4.0691170 15.000000
## 26  Quadrat.7 Shannon diversity  6.415378  6.577376 0.3883161  5.816291
## 27  Quadrat.7 Simpson diversity  4.795151  4.851456 0.3315168  4.201695
## 28  Quadrat.8  Species richness 14.000000 14.249416 1.6406342 14.000000
## 29  Quadrat.8 Shannon diversity  6.244415  6.346618 0.3779586  5.605832
## 30  Quadrat.8 Simpson diversity  4.350337  4.384741 0.2743261  3.847072
## 31  Quadrat.9  Species richness 16.000000 17.580488 5.2211148 16.000000
## 32  Quadrat.9 Shannon diversity  8.450869  9.469144 1.1694153  7.177132
## 33  Quadrat.9 Simpson diversity  5.475570  5.795812 0.8690849  4.092436
##          UCL
## 1  14.319217
## 2   6.068678
## 3   4.157969
## 4  17.195483
## 5   5.007290
## 6   3.830469
## 7  14.658511
## 8  10.168433
## 9   8.076187
## 10 15.242276
## 11 10.629041
## 12  9.225942
## 13 34.188019
## 14  6.615591
## 15  4.958963
## 16 24.075454
## 17  7.190066
## 18  5.481801
## 19 27.666430
## 20  6.288502
## 21  3.308660
## 22 26.040705
## 23  4.696944
## 24  3.954207
## 25 23.872579
## 26  7.338462
## 27  5.501218
## 28 17.465000
## 29  7.087403
## 30  4.922410
## 31 27.813685
## 32 11.761156
## 33  7.499187
o <- c(446)

Barrow_Datao <- iNEXT(Barrow_Nos, q=c(0), datatype= "abundance", size = o)

Barrow_Datao
## Compare 11 assemblages with Hill number order q = 0.
## $class: iNEXT
## 
## $DataInfo: basic data information
##    Assemblage   n S.obs     SC f1 f2 f3 f4 f5 f6 f7 f8 f9 f10
## 1   Quadrat.1 132    10 0.9925  1  1  1  3  0  0  0  1  0   0
## 2   Quadrat.2 444    14 1.0000  0  1  1  0  1  1  0  0  0   0
## 3   Quadrat.3 446    14 0.9888  5  0  0  1  0  0  0  0  0   1
## 4   Quadrat.4 294    12 0.9898  3  1  0  0  0  0  0  1  1   0
## 5   Quadrat.5 277    19 0.9893  3  5  4  1  0  1  0  1  0   0
## 6   Quadrat.6 464    10 0.9935  3  1  1  0  0  0  0  1  0   0
## 7   Quadrat.7 328    15 0.9909  3  5  0  0  0  0  0  0  0   2
## 8   Quadrat.8 428    14 0.9977  1  2  1  0  1  0  1  0  0   0
## 9   Quadrat.9  82    16 0.9527  4  5  2  1  1  1  0  0  0   0
## 10 Quadrat.10 250    10 0.9920  2  1  0  0  3  0  0  0  0   1
## 11 Quadrat.11 155    13 1.0000  0  1  1  3  1  2  0  0  0   0
## 
## $iNextEst: diversity estimates with rarefied and extrapolated samples.
## $size_based (LCL and UCL are obtained for fixed size.)
## 
##    Assemblage   m        Method Order.q        qD    qD.LCL   qD.UCL        SC
## 1   Quadrat.1 131   Rarefaction       0  9.992424  8.259066 11.72578 0.9924242
## 2   Quadrat.1 132      Observed       0 10.000000  8.262678 11.73732 0.9925382
## 3   Quadrat.1 133 Extrapolation       0 10.007462  8.264854 11.75007 0.9926504
## 4   Quadrat.1 446 Extrapolation       0 10.491952  7.031508 13.95240 0.9999359
## 5   Quadrat.2 443   Rarefaction       0 14.000000 13.173573 14.82643 1.0000000
## 6   Quadrat.2 444      Observed       0 14.000000 13.173185 14.82681 1.0000000
## 7   Quadrat.2 445 Extrapolation       0 14.000000 13.173129 14.82687 1.0000000
## 8   Quadrat.2 446 Extrapolation       0 14.000000 13.173063 14.82694 1.0000000
## 9   Quadrat.3 446      Observed       0 14.000000 10.951012 17.04899 0.9888018
## 10  Quadrat.4 293   Rarefaction       0 11.989796  9.247733 14.73186 0.9897959
## 11  Quadrat.4 294      Observed       0 12.000000  9.250627 14.74937 0.9898191
## 12  Quadrat.4 295 Extrapolation       0 12.010181  9.252708 14.76765 0.9898422
## 13  Quadrat.4 446 Extrapolation       0 13.309986  9.387136 17.23284 0.9927929
## 14  Quadrat.5 276   Rarefaction       0 18.989170 16.480133 21.49821 0.9891697
## 15  Quadrat.5 277      Observed       0 19.000000 16.488148 21.51185 0.9892989
## 16  Quadrat.5 278 Extrapolation       0 19.010701 16.496002 21.52540 0.9894266
## 17  Quadrat.5 446 Extrapolation       0 19.778838 16.369349 23.18833 0.9985929
## 18  Quadrat.6 446   Rarefaction       0  9.882147  7.108750 12.65554 0.9933680
## 19  Quadrat.6 463   Rarefaction       0  9.993534  7.142712 12.84436 0.9935345
## 20  Quadrat.6 464      Observed       0 10.000000  7.144602 12.85540 0.9935438
## 21  Quadrat.6 465 Extrapolation       0 10.006456  7.146148 12.86676 0.9935531
## 22  Quadrat.7 327   Rarefaction       0 14.990854 12.276862 17.70485 0.9908537
## 23  Quadrat.7 328      Observed       0 15.000000 12.280732 17.71927 0.9909460
## 24  Quadrat.7 329 Extrapolation       0 15.009054 12.284195 17.73391 0.9910373
## 25  Quadrat.7 446 Extrapolation       0 15.626132 12.240115 19.01215 0.9972641
## 26  Quadrat.8 427   Rarefaction       0 13.997664 12.201693 15.79363 0.9976636
## 27  Quadrat.8 428      Observed       0 14.000000 12.202355 15.79765 0.9976852
## 28  Quadrat.8 429 Extrapolation       0 14.002315 12.202690 15.80194 0.9977067
## 29  Quadrat.8 446 Extrapolation       0 14.038536 12.205148 15.87192 0.9980429
## 30  Quadrat.9  81   Rarefaction       0 15.951220 13.152724 18.74971 0.9512195
## 31  Quadrat.9  82      Observed       0 16.000000 13.176630 18.82337 0.9526800
## 32  Quadrat.9  83 Extrapolation       0 16.047320 13.199131 18.89551 0.9540968
## 33  Quadrat.9 446 Extrapolation       0 17.580463 10.353966 24.80696 0.9999993
## 34 Quadrat.10 249   Rarefaction       0  9.992000  8.186928 11.79707 0.9920000
## 35 Quadrat.10 250      Observed       0 10.000000  8.190185 11.80982 0.9920320
## 36 Quadrat.10 251 Extrapolation       0 10.007968  8.192176 11.82376 0.9920639
## 37 Quadrat.10 446 Extrapolation       0 11.083929  8.186542 13.98132 0.9963677
## 38 Quadrat.11 154   Rarefaction       0 13.000000 11.830171 14.16983 1.0000000
## 39 Quadrat.11 155      Observed       0 13.000000 11.828028 14.17197 1.0000000
## 40 Quadrat.11 156 Extrapolation       0 13.000000 11.823801 14.17620 1.0000000
## 41 Quadrat.11 446 Extrapolation       0 13.000000 11.145184 14.85482 1.0000000
##       SC.LCL    SC.UCL
## 1  0.9763369 1.0000000
## 2  0.9756721 1.0000000
## 3  0.9758954 1.0000000
## 4  0.9964256 1.0000000
## 5  0.9970100 1.0000000
## 6  0.9971843 1.0000000
## 7  0.9971944 1.0000000
## 8  0.9972044 1.0000000
## 9  0.9817683 0.9958353
## 10 0.9808407 0.9987512
## 11 0.9800977 0.9995405
## 12 0.9801313 0.9995531
## 13 0.9847867 1.0000000
## 14 0.9777336 1.0000000
## 15 0.9778391 1.0000000
## 16 0.9779436 1.0000000
## 17 0.9880954 1.0000000
## 18 0.9869958 0.9997402
## 19 0.9870712 0.9999977
## 20 0.9868260 1.0000000
## 21 0.9868370 1.0000000
## 22 0.9822357 0.9994716
## 23 0.9821250 0.9997669
## 24 0.9822184 0.9998563
## 25 0.9893267 1.0000000
## 26 0.9934078 1.0000000
## 27 0.9931699 1.0000000
## 28 0.9931980 1.0000000
## 29 0.9936409 1.0000000
## 30 0.9087112 0.9937278
## 31 0.9103078 0.9950522
## 32 0.9118590 0.9963345
## 33 0.9950194 1.0000000
## 34 0.9839923 1.0000000
## 35 0.9831483 1.0000000
## 36 0.9832015 1.0000000
## 37 0.9907884 1.0000000
## 38 0.9910441 1.0000000
## 39 0.9906779 1.0000000
## 40 0.9907780 1.0000000
## 41 0.9983360 1.0000000
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$size_based to view complete output.
## 
## $coverage_based (LCL and UCL are obtained for fixed coverage; interval length is wider due to varying size in bootstraps.)
## 
##    Assemblage        SC   m        Method Order.q        qD    qD.LCL   qD.UCL
## 1   Quadrat.1 0.9924242 130   Rarefaction       0  9.986034  6.541212 13.43086
## 2   Quadrat.1 0.9925382 132      Observed       0 10.000000  6.545477 13.45452
## 3   Quadrat.1 0.9926504 133 Extrapolation       0 10.007462  6.543486 13.47144
## 4   Quadrat.1 0.9999359 446 Extrapolation       0 10.491952  6.349864 14.63404
## 5   Quadrat.2 1.0000000 444      Observed       0 14.000000 12.726331 15.27367
## 6   Quadrat.3 0.9888018 446      Observed       0 14.000000  8.129881 19.87012
## 7   Quadrat.4 0.9897959 292   Rarefaction       0 11.982627  6.816726 17.14853
## 8   Quadrat.4 0.9898191 294      Observed       0 12.000000  6.826324 17.17368
## 9   Quadrat.4 0.9898422 295 Extrapolation       0 12.010181  6.830164 17.19020
## 10  Quadrat.4 0.9927929 446 Extrapolation       0 13.309986  7.211483 19.40849
## 11  Quadrat.5 0.9891697 275   Rarefaction       0 18.983073 13.641243 24.32490
## 12  Quadrat.5 0.9892989 277      Observed       0 19.000000 13.619014 24.38099
## 13  Quadrat.5 0.9894266 278 Extrapolation       0 19.010701 13.590321 24.43108
## 14  Quadrat.5 0.9985929 446 Extrapolation       0 19.778838 11.127390 28.43029
## 15  Quadrat.6 0.9933680 446   Rarefaction       0  9.882147  3.269683 16.49461
## 16  Quadrat.6 0.9935345 462   Rarefaction       0  9.990245  3.380144 16.60034
## 17  Quadrat.6 0.9935438 464      Observed       0 10.000000  3.388571 16.61143
## 18  Quadrat.6 0.9935531 465 Extrapolation       0 10.006456  3.393254 16.61966
## 19  Quadrat.7 0.9908537 327   Rarefaction       0 14.988227  9.416644 20.55981
## 20  Quadrat.7 0.9909460 328      Observed       0 15.000000  9.399274 20.60073
## 21  Quadrat.7 0.9910373 329 Extrapolation       0 15.009054  9.378952 20.63916
## 22  Quadrat.7 0.9972641 446 Extrapolation       0 15.626132  7.917241 23.33502
## 23  Quadrat.8 0.9976636 427   Rarefaction       0 13.996602 10.691021 17.30218
## 24  Quadrat.8 0.9976852 428      Observed       0 14.000000 10.688978 17.31102
## 25  Quadrat.8 0.9977067 429 Extrapolation       0 14.002315 10.685370 17.31926
## 26  Quadrat.8 0.9980429 446 Extrapolation       0 14.038536 10.627794 17.44928
## 27  Quadrat.9 0.9512195  80   Rarefaction       0 15.914285 10.513187 21.31538
## 28  Quadrat.9 0.9526800  82      Observed       0 16.000000 10.543409 21.45659
## 29  Quadrat.9 0.9540968  83 Extrapolation       0 16.047320 10.531475 21.56316
## 30  Quadrat.9 0.9999993 446 Extrapolation       0 17.580463  9.679520 25.48141
## 31 Quadrat.10 0.9920000 248   Rarefaction       0  9.984021  6.632577 13.33546
## 32 Quadrat.10 0.9920320 250      Observed       0 10.000000  6.642215 13.35778
## 33 Quadrat.10 0.9920639 251 Extrapolation       0 10.007968  6.646539 13.36940
## 34 Quadrat.10 0.9963677 446 Extrapolation       0 11.083929  6.997490 15.17037
## 35 Quadrat.11 1.0000000 155      Observed       0 13.000000 10.903311 15.09669
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$coverage_based to view complete output.
## 
## $AsyEst: asymptotic diversity estimates along with related statistics.
##    Assemblage         Diversity  Observed Estimator      s.e.       LCL
## 1   Quadrat.1  Species richness 10.000000 10.496212 1.9076631 10.000000
## 2   Quadrat.1 Shannon diversity  4.909318  5.102191 0.5003687  4.121486
## 3   Quadrat.1 Simpson diversity  3.293762  3.352462 0.4038867  2.560859
## 4  Quadrat.10  Species richness 10.000000 11.992000 2.8979238 10.000000
## 5  Quadrat.10 Shannon diversity  4.373262  4.478543 0.2622962  3.964452
## 6  Quadrat.10 Simpson diversity  3.435954  3.469900 0.1806293  3.115873
## 7  Quadrat.11  Species richness 13.000000 13.000000 0.6862959 13.000000
## 8  Quadrat.11 Shannon diversity  8.680817  9.034744 0.5953066  7.867964
## 9  Quadrat.11 Simpson diversity  6.602088  6.851320 0.6556598  5.566251
## 10  Quadrat.2  Species richness 14.000000 14.000000 0.5556725 14.000000
## 11  Quadrat.2 Shannon diversity  9.824330  9.972034 0.3182770  9.348222
## 12  Quadrat.2 Simpson diversity  8.348268  8.489081 0.3670193  7.769736
## 13  Quadrat.3  Species richness 14.000000 23.977578 4.8531422 14.465595
## 14  Quadrat.3 Shannon diversity  5.827336  5.980165 0.2952901  5.401407
## 15  Quadrat.3 Simpson diversity  4.475856  4.511092 0.2296259  4.061033
## 16  Quadrat.4  Species richness 12.000000 16.484694 3.9377634 12.000000
## 17  Quadrat.4 Shannon diversity  6.330739  6.508285 0.3818525  5.759867
## 18  Quadrat.4 Simpson diversity  4.762839  4.824801 0.3613467  4.116575
## 19  Quadrat.5  Species richness 19.000000 19.896751 5.2029227 19.000000
## 20  Quadrat.5 Shannon diversity  5.076505  5.269242 0.4008832  4.483525
## 21  Quadrat.5 Simpson diversity  2.755773  2.773417 0.2019592  2.377584
## 22  Quadrat.6  Species richness 10.000000 14.490302 4.1591244 10.000000
## 23  Quadrat.6 Shannon diversity  4.290540  4.357068 0.1611788  4.041164
## 24  Quadrat.6 Simpson diversity  3.687712  3.709244 0.1232947  3.467591
## 25  Quadrat.7  Species richness 15.000000 15.897256 3.6813951 15.000000
## 26  Quadrat.7 Shannon diversity  6.415378  6.577376 0.3655749  5.860863
## 27  Quadrat.7 Simpson diversity  4.795151  4.851456 0.3121001  4.239751
## 28  Quadrat.8  Species richness 14.000000 14.249416 1.9184661 14.000000
## 29  Quadrat.8 Shannon diversity  6.244415  6.346618 0.3122403  5.734638
## 30  Quadrat.8 Simpson diversity  4.350337  4.384741 0.2424309  3.909585
## 31  Quadrat.9  Species richness 16.000000 17.580488 5.0205779 16.000000
## 32  Quadrat.9 Shannon diversity  8.450869  9.469144 1.0722751  7.367524
## 33  Quadrat.9 Simpson diversity  5.475570  5.795812 0.7772191  4.272490
##          UCL
## 1  14.235163
## 2   6.082896
## 3   4.144066
## 4  17.671826
## 5   4.992634
## 6   3.823927
## 7  14.345115
## 8  10.201523
## 9   8.136390
## 10 15.089098
## 11 10.595845
## 12  9.208425
## 13 33.489562
## 14  6.558923
## 15  4.961150
## 16 24.202568
## 17  7.256702
## 18  5.533028
## 19 30.094292
## 20  6.054958
## 21  3.169249
## 22 22.642036
## 23  4.672973
## 24  3.950897
## 25 23.112658
## 26  7.293890
## 27  5.463162
## 28 18.009540
## 29  6.958597
## 30  4.859897
## 31 27.420640
## 32 11.570765
## 33  7.319133
p <- c(294)

Barrow_Datap <- iNEXT(Barrow_Nos, q=c(0), datatype= "abundance", size = p)

Barrow_Datap
## Compare 11 assemblages with Hill number order q = 0.
## $class: iNEXT
## 
## $DataInfo: basic data information
##    Assemblage   n S.obs     SC f1 f2 f3 f4 f5 f6 f7 f8 f9 f10
## 1   Quadrat.1 132    10 0.9925  1  1  1  3  0  0  0  1  0   0
## 2   Quadrat.2 444    14 1.0000  0  1  1  0  1  1  0  0  0   0
## 3   Quadrat.3 446    14 0.9888  5  0  0  1  0  0  0  0  0   1
## 4   Quadrat.4 294    12 0.9898  3  1  0  0  0  0  0  1  1   0
## 5   Quadrat.5 277    19 0.9893  3  5  4  1  0  1  0  1  0   0
## 6   Quadrat.6 464    10 0.9935  3  1  1  0  0  0  0  1  0   0
## 7   Quadrat.7 328    15 0.9909  3  5  0  0  0  0  0  0  0   2
## 8   Quadrat.8 428    14 0.9977  1  2  1  0  1  0  1  0  0   0
## 9   Quadrat.9  82    16 0.9527  4  5  2  1  1  1  0  0  0   0
## 10 Quadrat.10 250    10 0.9920  2  1  0  0  3  0  0  0  0   1
## 11 Quadrat.11 155    13 1.0000  0  1  1  3  1  2  0  0  0   0
## 
## $iNextEst: diversity estimates with rarefied and extrapolated samples.
## $size_based (LCL and UCL are obtained for fixed size.)
## 
##    Assemblage   m        Method Order.q        qD    qD.LCL   qD.UCL        SC
## 1   Quadrat.1 131   Rarefaction       0  9.992424  8.464005 11.52084 0.9924242
## 2   Quadrat.1 132      Observed       0 10.000000  8.465894 11.53411 0.9925382
## 3   Quadrat.1 133 Extrapolation       0 10.007462  8.466702 11.54822 0.9926504
## 4   Quadrat.1 294 Extrapolation       0 10.453588  7.955826 12.95135 0.9993590
## 5   Quadrat.2 294   Rarefaction       0 13.842723 13.217198 14.46825 0.9975280
## 6   Quadrat.2 443   Rarefaction       0 14.000000 13.313796 14.68620 1.0000000
## 7   Quadrat.2 444      Observed       0 14.000000 13.313013 14.68699 1.0000000
## 8   Quadrat.2 445 Extrapolation       0 14.000000 13.312580 14.68742 1.0000000
## 9   Quadrat.3 294   Rarefaction       0 12.282806 10.368322 14.19729 0.9884423
## 10  Quadrat.3 445   Rarefaction       0 13.988789 11.131921 16.84566 0.9887892
## 11  Quadrat.3 446      Observed       0 14.000000 11.136650 16.86335 0.9888018
## 12  Quadrat.3 447 Extrapolation       0 14.011198 11.141365 16.88103 0.9888144
## 13  Quadrat.4 294      Observed       0 12.000000  9.307387 14.69261 0.9898191
## 14  Quadrat.5 276   Rarefaction       0 18.989170 16.023383 21.95496 0.9891697
## 15  Quadrat.5 277      Observed       0 19.000000 16.030206 21.96979 0.9892989
## 16  Quadrat.5 278 Extrapolation       0 19.010701 16.036893 21.98451 0.9894266
## 17  Quadrat.5 294 Extrapolation       0 19.165546 16.126492 22.20460 0.9912744
## 18  Quadrat.6 294   Rarefaction       0  8.718208  6.350463 11.08595 0.9910892
## 19  Quadrat.6 463   Rarefaction       0  9.993534  6.790718 13.19635 0.9935345
## 20  Quadrat.6 464      Observed       0 10.000000  6.792623 13.20738 0.9935438
## 21  Quadrat.6 465 Extrapolation       0 10.006456  6.794519 13.21839 0.9935531
## 22  Quadrat.7 294   Rarefaction       0 14.636720 12.194914 17.07853 0.9877769
## 23  Quadrat.7 327   Rarefaction       0 14.990854 12.441132 17.54058 0.9908537
## 24  Quadrat.7 328      Observed       0 15.000000 12.447282 17.55272 0.9909460
## 25  Quadrat.7 329 Extrapolation       0 15.009054 12.452838 17.56527 0.9910373
## 26  Quadrat.8 294   Rarefaction       0 13.458543 11.891420 15.02567 0.9939557
## 27  Quadrat.8 427   Rarefaction       0 13.997664 12.365470 15.62986 0.9976636
## 28  Quadrat.8 428      Observed       0 14.000000 12.367363 15.63264 0.9976852
## 29  Quadrat.8 429 Extrapolation       0 14.002315 12.369224 15.63541 0.9977067
## 30  Quadrat.9  81   Rarefaction       0 15.951220 13.590898 18.31154 0.9512195
## 31  Quadrat.9  82      Observed       0 16.000000 13.624165 18.37584 0.9526800
## 32  Quadrat.9  83 Extrapolation       0 16.047320 13.655957 18.43868 0.9540968
## 33  Quadrat.9 294 Extrapolation       0 17.577975 12.527156 22.62880 0.9999248
## 34 Quadrat.10 249   Rarefaction       0  9.992000  7.499855 12.48415 0.9920000
## 35 Quadrat.10 250      Observed       0 10.000000  7.501605 12.49840 0.9920320
## 36 Quadrat.10 251 Extrapolation       0 10.007968  7.502252 12.51368 0.9920639
## 37 Quadrat.10 294 Extrapolation       0 10.322062  7.515738 13.12839 0.9933202
## 38 Quadrat.11 154   Rarefaction       0 13.000000 11.967360 14.03264 1.0000000
## 39 Quadrat.11 155      Observed       0 13.000000 11.966671 14.03333 1.0000000
## 40 Quadrat.11 156 Extrapolation       0 13.000000 11.965804 14.03420 1.0000000
## 41 Quadrat.11 294 Extrapolation       0 13.000000 11.669409 14.33059 1.0000000
##       SC.LCL    SC.UCL
## 1  0.9787398 1.0000000
## 2  0.9780467 1.0000000
## 3  0.9782659 1.0000000
## 4  0.9939048 1.0000000
## 5  0.9951501 0.9999058
## 6  0.9974634 1.0000000
## 7  0.9977261 1.0000000
## 8  0.9977363 1.0000000
## 9  0.9814113 0.9954733
## 10 0.9811472 0.9964313
## 11 0.9811605 0.9964431
## 12 0.9811739 0.9964549
## 13 0.9801848 0.9994534
## 14 0.9790575 0.9992818
## 15 0.9791779 0.9994200
## 16 0.9792968 0.9995565
## 17 0.9810281 1.0000000
## 18 0.9846905 0.9974880
## 19 0.9873901 0.9996789
## 20 0.9874018 0.9996857
## 21 0.9874135 0.9996926
## 22 0.9809091 0.9946447
## 23 0.9838548 0.9978525
## 24 0.9835123 0.9983796
## 25 0.9836013 0.9984734
## 26 0.9902001 0.9977113
## 27 0.9932025 1.0000000
## 28 0.9932311 1.0000000
## 29 0.9932594 1.0000000
## 30 0.9181140 0.9843250
## 31 0.9194660 0.9858940
## 32 0.9208008 0.9873928
## 33 0.9913870 1.0000000
## 34 0.9837031 1.0000000
## 35 0.9824008 1.0000000
## 36 0.9824681 1.0000000
## 37 0.9850251 1.0000000
## 38 0.9903564 1.0000000
## 39 0.9904818 1.0000000
## 40 0.9905750 1.0000000
## 41 0.9966582 1.0000000
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$size_based to view complete output.
## 
## $coverage_based (LCL and UCL are obtained for fixed coverage; interval length is wider due to varying size in bootstraps.)
## 
##    Assemblage        SC   m        Method Order.q        qD    qD.LCL   qD.UCL
## 1   Quadrat.1 0.9924242 130   Rarefaction       0  9.986034  7.360182 12.61189
## 2   Quadrat.1 0.9925382 132      Observed       0 10.000000  7.366582 12.63342
## 3   Quadrat.1 0.9926504 133 Extrapolation       0 10.007462  7.365845 12.64908
## 4   Quadrat.1 0.9993590 294 Extrapolation       0 10.453588  7.261101 13.64608
## 5   Quadrat.2 0.9975280 294   Rarefaction       0 13.842723 13.072702 14.61274
## 6   Quadrat.2 1.0000000 444      Observed       0 14.000000 13.072990 14.92701
## 7   Quadrat.3 0.9884423 294   Rarefaction       0 12.282806  6.426984 18.13863
## 8   Quadrat.3 0.9887892 444   Rarefaction       0 13.977826  7.898266 20.05738
## 9   Quadrat.3 0.9888018 446      Observed       0 14.000000  7.908231 20.09177
## 10  Quadrat.3 0.9888144 447 Extrapolation       0 14.011198  7.909656 20.11274
## 11  Quadrat.4 0.9898191 294      Observed       0 12.000000  5.654750 18.34525
## 12  Quadrat.5 0.9891697 275   Rarefaction       0 18.983073 13.550164 24.41598
## 13  Quadrat.5 0.9892989 277      Observed       0 19.000000 13.537596 24.46240
## 14  Quadrat.5 0.9894266 278 Extrapolation       0 19.010701 13.517223 24.50418
## 15  Quadrat.5 0.9912744 294 Extrapolation       0 19.165546 13.201372 25.12972
## 16  Quadrat.6 0.9910892 294   Rarefaction       0  8.718208  2.927276 14.50914
## 17  Quadrat.6 0.9935345 462   Rarefaction       0  9.990245  3.238886 16.74160
## 18  Quadrat.6 0.9935438 464      Observed       0 10.000000  3.243934 16.75607
## 19  Quadrat.6 0.9935531 465 Extrapolation       0 10.006456  3.254872 16.75804
## 20  Quadrat.7 0.9877769 294   Rarefaction       0 14.636719 11.081321 18.19212
## 21  Quadrat.7 0.9908537 327   Rarefaction       0 14.988227 11.010119 18.96634
## 22  Quadrat.7 0.9909460 328      Observed       0 15.000000 11.004038 18.99596
## 23  Quadrat.7 0.9910373 329 Extrapolation       0 15.009054 10.995280 19.02283
## 24  Quadrat.8 0.9939557 294   Rarefaction       0 13.458543 11.091572 15.82551
## 25  Quadrat.8 0.9976636 427   Rarefaction       0 13.996602 10.931509 17.06169
## 26  Quadrat.8 0.9976852 428      Observed       0 14.000000 10.929353 17.07065
## 27  Quadrat.8 0.9977067 429 Extrapolation       0 14.002315 10.925834 17.07880
## 28  Quadrat.9 0.9512195  80   Rarefaction       0 15.914285 12.187352 19.64122
## 29  Quadrat.9 0.9526800  82      Observed       0 16.000000 12.222720 19.77728
## 30  Quadrat.9 0.9540968  83 Extrapolation       0 16.047320 12.216277 19.87836
## 31  Quadrat.9 0.9999248 294 Extrapolation       0 17.577975 11.589310 23.56664
## 32 Quadrat.10 0.9920000 248   Rarefaction       0  9.984021  6.159273 13.80877
## 33 Quadrat.10 0.9920320 250      Observed       0 10.000000  6.169666 13.83033
## 34 Quadrat.10 0.9920639 251 Extrapolation       0 10.007968  6.171289 13.84465
## 35 Quadrat.10 0.9933202 294 Extrapolation       0 10.322062  6.246743 14.39738
## 36 Quadrat.11 1.0000000 155      Observed       0 13.000000 11.325403 14.67460
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$coverage_based to view complete output.
## 
## $AsyEst: asymptotic diversity estimates along with related statistics.
##    Assemblage         Diversity  Observed Estimator      s.e.       LCL
## 1   Quadrat.1  Species richness 10.000000 10.496212 1.9574320 10.000000
## 2   Quadrat.1 Shannon diversity  4.909318  5.102191 0.5154355  4.091956
## 3   Quadrat.1 Simpson diversity  3.293762  3.352462 0.4203710  2.528550
## 4  Quadrat.10  Species richness 10.000000 11.992000 2.5235149 10.000000
## 5  Quadrat.10 Shannon diversity  4.373262  4.478543 0.2382561  4.011569
## 6  Quadrat.10 Simpson diversity  3.435954  3.469900 0.1601391  3.156033
## 7  Quadrat.11  Species richness 13.000000 13.000000 0.6950538 13.000000
## 8  Quadrat.11 Shannon diversity  8.680817  9.034744 0.6209095  7.817784
## 9  Quadrat.11 Simpson diversity  6.602088  6.851320 0.6558182  5.565940
## 10  Quadrat.2  Species richness 14.000000 14.000000 0.6701408 14.000000
## 11  Quadrat.2 Shannon diversity  9.824330  9.972034 0.3127419  9.359071
## 12  Quadrat.2 Simpson diversity  8.348268  8.489081 0.3556149  7.792088
## 13  Quadrat.3  Species richness 14.000000 23.977578 6.8624885 14.000000
## 14  Quadrat.3 Shannon diversity  5.827336  5.980165 0.2833917  5.424727
## 15  Quadrat.3 Simpson diversity  4.475856  4.511092 0.1931672  4.132491
## 16  Quadrat.4  Species richness 12.000000 16.484694 4.8033263 12.000000
## 17  Quadrat.4 Shannon diversity  6.330739  6.508285 0.3695425  5.783995
## 18  Quadrat.4 Simpson diversity  4.762839  4.824801 0.3267141  4.184453
## 19  Quadrat.5  Species richness 19.000000 19.896751 5.1731517 19.000000
## 20  Quadrat.5 Shannon diversity  5.076505  5.269242 0.4727149  4.342738
## 21  Quadrat.5 Simpson diversity  2.755773  2.773417 0.2478201  2.287698
## 22  Quadrat.6  Species richness 10.000000 14.490302 5.5295084 10.000000
## 23  Quadrat.6 Shannon diversity  4.290540  4.357068 0.1725109  4.018953
## 24  Quadrat.6 Simpson diversity  3.687712  3.709244 0.1262383  3.461821
## 25  Quadrat.7  Species richness 15.000000 15.897256 3.8126805 15.000000
## 26  Quadrat.7 Shannon diversity  6.415378  6.577376 0.3432900  5.904540
## 27  Quadrat.7 Simpson diversity  4.795151  4.851456 0.3048648  4.253932
## 28  Quadrat.8  Species richness 14.000000 14.249416 1.9730072 14.000000
## 29  Quadrat.8 Shannon diversity  6.244415  6.346618 0.3371715  5.685774
## 30  Quadrat.8 Simpson diversity  4.350337  4.384741 0.2467905  3.901040
## 31  Quadrat.9  Species richness 16.000000 17.580488 5.3665914 16.000000
## 32  Quadrat.9 Shannon diversity  8.450869  9.469144 1.1338369  7.246865
## 33  Quadrat.9 Simpson diversity  5.475570  5.795812 0.8545564  4.120912
##          UCL
## 1  14.332708
## 2   6.112426
## 3   4.176374
## 4  16.937998
## 5   4.945516
## 6   3.783767
## 7  14.362280
## 8  10.251704
## 9   8.136700
## 10 15.313452
## 11 10.584996
## 12  9.186073
## 13 37.427809
## 14  6.535602
## 15  4.889693
## 16 25.899041
## 17  7.232574
## 18  5.465149
## 19 30.035942
## 20  6.195746
## 21  3.259135
## 22 25.327939
## 23  4.695183
## 24  3.956667
## 25 23.369973
## 26  7.250212
## 27  5.448981
## 28 18.116439
## 29  7.007461
## 30  4.868441
## 31 28.098814
## 32 11.691424
## 33  7.470711
q <- c(277)

Barrow_Dataq <- iNEXT(Barrow_Nos, q=c(0), datatype= "abundance", size = q)

Barrow_Dataq
## Compare 11 assemblages with Hill number order q = 0.
## $class: iNEXT
## 
## $DataInfo: basic data information
##    Assemblage   n S.obs     SC f1 f2 f3 f4 f5 f6 f7 f8 f9 f10
## 1   Quadrat.1 132    10 0.9925  1  1  1  3  0  0  0  1  0   0
## 2   Quadrat.2 444    14 1.0000  0  1  1  0  1  1  0  0  0   0
## 3   Quadrat.3 446    14 0.9888  5  0  0  1  0  0  0  0  0   1
## 4   Quadrat.4 294    12 0.9898  3  1  0  0  0  0  0  1  1   0
## 5   Quadrat.5 277    19 0.9893  3  5  4  1  0  1  0  1  0   0
## 6   Quadrat.6 464    10 0.9935  3  1  1  0  0  0  0  1  0   0
## 7   Quadrat.7 328    15 0.9909  3  5  0  0  0  0  0  0  0   2
## 8   Quadrat.8 428    14 0.9977  1  2  1  0  1  0  1  0  0   0
## 9   Quadrat.9  82    16 0.9527  4  5  2  1  1  1  0  0  0   0
## 10 Quadrat.10 250    10 0.9920  2  1  0  0  3  0  0  0  0   1
## 11 Quadrat.11 155    13 1.0000  0  1  1  3  1  2  0  0  0   0
## 
## $iNextEst: diversity estimates with rarefied and extrapolated samples.
## $size_based (LCL and UCL are obtained for fixed size.)
## 
##    Assemblage   m        Method Order.q        qD    qD.LCL   qD.UCL        SC
## 1   Quadrat.1 131   Rarefaction       0  9.992424  8.547030 11.43782 0.9924242
## 2   Quadrat.1 132      Observed       0 10.000000  8.548341 11.45166 0.9925382
## 3   Quadrat.1 133 Extrapolation       0 10.007462  8.548139 11.46679 0.9926504
## 4   Quadrat.1 277 Extrapolation       0 10.441066  8.086725 12.79541 0.9991707
## 5   Quadrat.2 277   Rarefaction       0 13.796516 12.843725 14.74931 0.9970534
## 6   Quadrat.2 443   Rarefaction       0 14.000000 13.027360 14.97264 1.0000000
## 7   Quadrat.2 444      Observed       0 14.000000 13.026842 14.97316 1.0000000
## 8   Quadrat.2 445 Extrapolation       0 14.000000 13.026723 14.97328 1.0000000
## 9   Quadrat.3 277   Rarefaction       0 12.085167 10.232251 13.93808 0.9883089
## 10  Quadrat.3 445   Rarefaction       0 13.988789 11.297819 16.67976 0.9887892
## 11  Quadrat.3 446      Observed       0 14.000000 11.303895 16.69610 0.9888018
## 12  Quadrat.3 447 Extrapolation       0 14.011198 11.309749 16.71265 0.9888144
## 13  Quadrat.4 277   Rarefaction       0 11.823373  9.382254 14.26449 0.9894244
## 14  Quadrat.4 293   Rarefaction       0 11.989796  9.453800 14.52579 0.9897959
## 15  Quadrat.4 294      Observed       0 12.000000  9.458054 14.54195 0.9898191
## 16  Quadrat.4 295 Extrapolation       0 12.010181  9.461358 14.55900 0.9898422
## 17  Quadrat.5 277      Observed       0 19.000000 16.016773 21.98323 0.9892989
## 18  Quadrat.6 277   Rarefaction       0  8.563578  6.168689 10.95847 0.9907356
## 19  Quadrat.6 463   Rarefaction       0  9.993534  6.726436 13.26063 0.9935345
## 20  Quadrat.6 464      Observed       0 10.000000  6.728730 13.27127 0.9935438
## 21  Quadrat.6 465 Extrapolation       0 10.006456  6.731014 13.28190 0.9935531
## 22  Quadrat.7 277   Rarefaction       0 14.414662 12.339872 16.48945 0.9861919
## 23  Quadrat.7 327   Rarefaction       0 14.990854 12.672617 17.30909 0.9908537
## 24  Quadrat.7 328      Observed       0 15.000000 12.676211 17.32379 0.9909460
## 25  Quadrat.7 329 Extrapolation       0 15.009054 12.679452 17.33866 0.9910373
## 26  Quadrat.8 277   Rarefaction       0 13.350121 12.047656 14.65259 0.9933171
## 27  Quadrat.8 427   Rarefaction       0 13.997664 12.353202 15.64213 0.9976636
## 28  Quadrat.8 428      Observed       0 14.000000 12.353497 15.64650 0.9976852
## 29  Quadrat.8 429 Extrapolation       0 14.002315 12.353558 15.65107 0.9977067
## 30  Quadrat.9  81   Rarefaction       0 15.951220 13.265254 18.63718 0.9512195
## 31  Quadrat.9  82      Observed       0 16.000000 13.298086 18.70191 0.9526800
## 32  Quadrat.9  83 Extrapolation       0 16.047320 13.329387 18.76525 0.9540968
## 33  Quadrat.9 277 Extrapolation       0 17.576276 12.202492 22.95006 0.9998739
## 34 Quadrat.10 249   Rarefaction       0  9.992000  7.856855 12.12714 0.9920000
## 35 Quadrat.10 250      Observed       0 10.000000  7.858817 12.14118 0.9920320
## 36 Quadrat.10 251 Extrapolation       0 10.007968  7.859790 12.15615 0.9920639
## 37 Quadrat.10 277 Extrapolation       0 10.204313  7.877684 12.53094 0.9928493
## 38 Quadrat.11 154   Rarefaction       0 13.000000 12.241106 13.75889 1.0000000
## 39 Quadrat.11 155      Observed       0 13.000000 12.239362 13.76064 1.0000000
## 40 Quadrat.11 156 Extrapolation       0 13.000000 12.237745 13.76225 1.0000000
## 41 Quadrat.11 277 Extrapolation       0 13.000000 12.006807 13.99319 1.0000000
##       SC.LCL    SC.UCL
## 1  0.9804251 1.0000000
## 2  0.9791489 1.0000000
## 3  0.9793686 1.0000000
## 4  0.9938032 1.0000000
## 5  0.9943109 0.9997958
## 6  0.9971671 1.0000000
## 7  0.9973630 1.0000000
## 8  0.9973730 1.0000000
## 9  0.9826225 0.9939953
## 10 0.9824489 0.9951296
## 11 0.9822815 0.9953221
## 12 0.9822914 0.9953374
## 13 0.9809210 0.9979279
## 14 0.9810674 0.9985245
## 15 0.9803569 0.9992813
## 16 0.9803880 0.9992963
## 17 0.9777563 1.0000000
## 18 0.9844636 0.9970077
## 19 0.9879021 0.9991669
## 20 0.9879101 0.9991775
## 21 0.9879180 0.9991881
## 22 0.9771668 0.9952170
## 23 0.9809396 1.0000000
## 24 0.9808687 1.0000000
## 25 0.9809552 1.0000000
## 26 0.9888594 0.9977749
## 27 0.9936213 1.0000000
## 28 0.9931391 1.0000000
## 29 0.9931694 1.0000000
## 30 0.9167712 0.9856678
## 31 0.9180303 0.9873297
## 32 0.9192684 0.9889251
## 33 0.9894977 1.0000000
## 34 0.9836129 1.0000000
## 35 0.9828399 1.0000000
## 36 0.9829002 1.0000000
## 37 0.9843585 1.0000000
## 38 0.9922345 1.0000000
## 39 0.9924856 1.0000000
## 40 0.9925855 1.0000000
## 41 0.9975657 1.0000000
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$size_based to view complete output.
## 
## $coverage_based (LCL and UCL are obtained for fixed coverage; interval length is wider due to varying size in bootstraps.)
## 
##    Assemblage        SC   m        Method Order.q        qD    qD.LCL   qD.UCL
## 1   Quadrat.1 0.9924242 130   Rarefaction       0  9.986034  7.478212 12.49386
## 2   Quadrat.1 0.9925382 132      Observed       0 10.000000  7.483841 12.51616
## 3   Quadrat.1 0.9926504 133 Extrapolation       0 10.007462  7.483139 12.53178
## 4   Quadrat.1 0.9991707 277 Extrapolation       0 10.441066  7.389647 13.49248
## 5   Quadrat.2 0.9970534 277   Rarefaction       0 13.796516 12.681885 14.91115
## 6   Quadrat.2 1.0000000 444      Observed       0 14.000000 12.630458 15.36954
## 7   Quadrat.3 0.9883089 277   Rarefaction       0 12.085167  6.030500 18.13983
## 8   Quadrat.3 0.9887892 444   Rarefaction       0 13.977826  7.609365 20.34629
## 9   Quadrat.3 0.9888018 446      Observed       0 14.000000  7.621646 20.37835
## 10  Quadrat.3 0.9888144 447 Extrapolation       0 14.011198  7.624899 20.39750
## 11  Quadrat.4 0.9894244 277   Rarefaction       0 11.823373  6.877480 16.76927
## 12  Quadrat.4 0.9897959 292   Rarefaction       0 11.982627  7.119050 16.84620
## 13  Quadrat.4 0.9898191 294      Observed       0 12.000000  7.129334 16.87067
## 14  Quadrat.4 0.9898422 295 Extrapolation       0 12.010181  7.137536 16.88283
## 15  Quadrat.5 0.9892989 277      Observed       0 19.000000 12.738133 25.26187
## 16  Quadrat.6 0.9907356 277   Rarefaction       0  8.563578  2.630087 14.49707
## 17  Quadrat.6 0.9935345 462   Rarefaction       0  9.990245  2.986816 16.99367
## 18  Quadrat.6 0.9935438 464      Observed       0 10.000000  2.992660 17.00734
## 19  Quadrat.6 0.9935531 465 Extrapolation       0 10.006456  2.995168 17.01774
## 20  Quadrat.7 0.9861919 277   Rarefaction       0 14.414662 10.022173 18.80715
## 21  Quadrat.7 0.9908537 327   Rarefaction       0 14.988227  8.760922 21.21553
## 22  Quadrat.7 0.9909460 328      Observed       0 15.000000  8.734889 21.26511
## 23  Quadrat.7 0.9910373 329 Extrapolation       0 15.009054  8.705369 21.31274
## 24  Quadrat.8 0.9933171 277   Rarefaction       0 13.350121 11.186935 15.51331
## 25  Quadrat.8 0.9976636 427   Rarefaction       0 13.996602 11.204261 16.78894
## 26  Quadrat.8 0.9976852 428      Observed       0 14.000000 11.202625 16.79738
## 27  Quadrat.8 0.9977067 429 Extrapolation       0 14.002315 11.199790 16.80484
## 28  Quadrat.9 0.9512195  80   Rarefaction       0 15.914285 12.257304 19.57126
## 29  Quadrat.9 0.9526800  82      Observed       0 16.000000 12.296430 19.70357
## 30  Quadrat.9 0.9540968  83 Extrapolation       0 16.047320 12.294103 19.80054
## 31  Quadrat.9 0.9998739 277 Extrapolation       0 17.576276 11.113928 24.03862
## 32 Quadrat.10 0.9920000 248   Rarefaction       0  9.984021  6.332451 13.63559
## 33 Quadrat.10 0.9920320 250      Observed       0 10.000000  6.342433 13.65757
## 34 Quadrat.10 0.9920639 251 Extrapolation       0 10.007968  6.345554 13.67038
## 35 Quadrat.10 0.9928493 277 Extrapolation       0 10.204313  6.401310 14.00732
## 36 Quadrat.11 1.0000000 155      Observed       0 13.000000 11.776831 14.22317
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$coverage_based to view complete output.
## 
## $AsyEst: asymptotic diversity estimates along with related statistics.
##    Assemblage         Diversity  Observed Estimator      s.e.       LCL
## 1   Quadrat.1  Species richness 10.000000 10.496212 2.5002710 10.000000
## 2   Quadrat.1 Shannon diversity  4.909318  5.102191 0.5150376  4.092736
## 3   Quadrat.1 Simpson diversity  3.293762  3.352462 0.3958669  2.576577
## 4  Quadrat.10  Species richness 10.000000 11.992000 2.7014470 10.000000
## 5  Quadrat.10 Shannon diversity  4.373262  4.478543 0.2519964  3.984639
## 6  Quadrat.10 Simpson diversity  3.435954  3.469900 0.1626620  3.151088
## 7  Quadrat.11  Species richness 13.000000 13.000000 0.7998378 13.000000
## 8  Quadrat.11 Shannon diversity  8.680817  9.034744 0.6005476  7.857692
## 9  Quadrat.11 Simpson diversity  6.602088  6.851320 0.6561530  5.565284
## 10  Quadrat.2  Species richness 14.000000 14.000000 0.5223120 14.000000
## 11  Quadrat.2 Shannon diversity  9.824330  9.972034 0.3210162  9.342853
## 12  Quadrat.2 Simpson diversity  8.348268  8.489081 0.3515918  7.799973
## 13  Quadrat.3  Species richness 14.000000 23.977578 6.6757011 14.000000
## 14  Quadrat.3 Shannon diversity  5.827336  5.980165 0.2826466  5.426187
## 15  Quadrat.3 Simpson diversity  4.475856  4.511092 0.2001010  4.118901
## 16  Quadrat.4  Species richness 12.000000 16.484694 4.3672390 12.000000
## 17  Quadrat.4 Shannon diversity  6.330739  6.508285 0.3874315  5.748933
## 18  Quadrat.4 Simpson diversity  4.762839  4.824801 0.3635381  4.112280
## 19  Quadrat.5  Species richness 19.000000 19.896751 6.0500690 19.000000
## 20  Quadrat.5 Shannon diversity  5.076505  5.269242 0.4123487  4.461053
## 21  Quadrat.5 Simpson diversity  2.755773  2.773417 0.2312438  2.320187
## 22  Quadrat.6  Species richness 10.000000 14.490302 5.3706963 10.000000
## 23  Quadrat.6 Shannon diversity  4.290540  4.357068 0.1675944  4.028589
## 24  Quadrat.6 Simpson diversity  3.687712  3.709244 0.1210360  3.472018
## 25  Quadrat.7  Species richness 15.000000 15.897256 3.3856573 15.000000
## 26  Quadrat.7 Shannon diversity  6.415378  6.577376 0.3608516  5.870120
## 27  Quadrat.7 Simpson diversity  4.795151  4.851456 0.3261300  4.212253
## 28  Quadrat.8  Species richness 14.000000 14.249416 2.5160921 14.000000
## 29  Quadrat.8 Shannon diversity  6.244415  6.346618 0.3631556  5.634846
## 30  Quadrat.8 Simpson diversity  4.350337  4.384741 0.2801266  3.835703
## 31  Quadrat.9  Species richness 16.000000 17.580488 4.2609036 16.000000
## 32  Quadrat.9 Shannon diversity  8.450869  9.469144 1.0283780  7.453561
## 33  Quadrat.9 Simpson diversity  5.475570  5.795812 0.7188233  4.386944
##          UCL
## 1  15.396653
## 2   6.111646
## 3   4.128347
## 4  17.286739
## 5   4.972446
## 6   3.788711
## 7  14.567653
## 8  10.211795
## 9   8.137357
## 10 15.023713
## 11 10.601214
## 12  9.178188
## 13 37.061712
## 14  6.534142
## 15  4.903283
## 16 25.044325
## 17  7.267636
## 18  5.537323
## 19 31.754668
## 20  6.077430
## 21  3.226646
## 22 25.016673
## 23  4.685547
## 24  3.946470
## 25 22.533022
## 26  7.284632
## 27  5.490660
## 28 19.180866
## 29  7.058389
## 30  4.933779
## 31 25.931705
## 32 11.484728
## 33  7.204679
r <- c(464)

Barrow_Datar <- iNEXT(Barrow_Nos, q=c(0), datatype= "abundance", size = r)

Barrow_Datar
## Compare 11 assemblages with Hill number order q = 0.
## $class: iNEXT
## 
## $DataInfo: basic data information
##    Assemblage   n S.obs     SC f1 f2 f3 f4 f5 f6 f7 f8 f9 f10
## 1   Quadrat.1 132    10 0.9925  1  1  1  3  0  0  0  1  0   0
## 2   Quadrat.2 444    14 1.0000  0  1  1  0  1  1  0  0  0   0
## 3   Quadrat.3 446    14 0.9888  5  0  0  1  0  0  0  0  0   1
## 4   Quadrat.4 294    12 0.9898  3  1  0  0  0  0  0  1  1   0
## 5   Quadrat.5 277    19 0.9893  3  5  4  1  0  1  0  1  0   0
## 6   Quadrat.6 464    10 0.9935  3  1  1  0  0  0  0  1  0   0
## 7   Quadrat.7 328    15 0.9909  3  5  0  0  0  0  0  0  0   2
## 8   Quadrat.8 428    14 0.9977  1  2  1  0  1  0  1  0  0   0
## 9   Quadrat.9  82    16 0.9527  4  5  2  1  1  1  0  0  0   0
## 10 Quadrat.10 250    10 0.9920  2  1  0  0  3  0  0  0  0   1
## 11 Quadrat.11 155    13 1.0000  0  1  1  3  1  2  0  0  0   0
## 
## $iNextEst: diversity estimates with rarefied and extrapolated samples.
## $size_based (LCL and UCL are obtained for fixed size.)
## 
##    Assemblage   m        Method Order.q        qD    qD.LCL   qD.UCL        SC
## 1   Quadrat.1 131   Rarefaction       0  9.992424  8.649866 11.33498 0.9924242
## 2   Quadrat.1 132      Observed       0 10.000000  8.653693 11.34631 0.9925382
## 3   Quadrat.1 133 Extrapolation       0 10.007462  8.657148 11.35778 0.9926504
## 4   Quadrat.1 464 Extrapolation       0 10.492969  8.039891 12.94605 0.9999512
## 5   Quadrat.2 443   Rarefaction       0 14.000000 13.181267 14.81873 1.0000000
## 6   Quadrat.2 444      Observed       0 14.000000 13.179849 14.82015 1.0000000
## 7   Quadrat.2 445 Extrapolation       0 14.000000 13.179045 14.82096 1.0000000
## 8   Quadrat.2 464 Extrapolation       0 14.000000 13.163258 14.83674 1.0000000
## 9   Quadrat.3 445   Rarefaction       0 13.988789 11.325138 16.65244 0.9887892
## 10  Quadrat.3 446      Observed       0 14.000000 11.331662 16.66834 0.9888018
## 11  Quadrat.3 447 Extrapolation       0 14.011198 11.338044 16.68435 0.9888144
## 12  Quadrat.3 464 Extrapolation       0 14.199656 11.444208 16.95510 0.9890259
## 13  Quadrat.4 293   Rarefaction       0 11.989796  9.402168 14.57742 0.9897959
## 14  Quadrat.4 294      Observed       0 12.000000  9.406758 14.59324 0.9898191
## 15  Quadrat.4 295 Extrapolation       0 12.010181  9.410833 14.60953 0.9898422
## 16  Quadrat.4 464 Extrapolation       0 13.437240  9.834309 17.04017 0.9930818
## 17  Quadrat.5 276   Rarefaction       0 18.989170 16.231157 21.74718 0.9891697
## 18  Quadrat.5 277      Observed       0 19.000000 16.236974 21.76303 0.9892989
## 19  Quadrat.5 278 Extrapolation       0 19.010701 16.242525 21.77888 0.9894266
## 20  Quadrat.5 464 Extrapolation       0 19.801753 15.889221 23.71428 0.9988664
## 21  Quadrat.6 464      Observed       0 10.000000  7.861748 12.13825 0.9935438
## 22  Quadrat.7 327   Rarefaction       0 14.990854 12.760348 17.22136 0.9908537
## 23  Quadrat.7 328      Observed       0 15.000000 12.766701 17.23330 0.9909460
## 24  Quadrat.7 329 Extrapolation       0 15.009054 12.772576 17.24553 0.9910373
## 25  Quadrat.7 464 Extrapolation       0 15.671373 12.919956 18.42279 0.9977207
## 26  Quadrat.8 427   Rarefaction       0 13.997664 12.140570 15.85476 0.9976636
## 27  Quadrat.8 428      Observed       0 14.000000 12.141037 15.85896 0.9976852
## 28  Quadrat.8 429 Extrapolation       0 14.002315 12.141100 15.86353 0.9977067
## 29  Quadrat.8 464 Extrapolation       0 14.071118 12.131471 16.01077 0.9983453
## 30  Quadrat.9  81   Rarefaction       0 15.951220 13.291557 18.61088 0.9512195
## 31  Quadrat.9  82      Observed       0 16.000000 13.314092 18.68591 0.9526800
## 32  Quadrat.9  83 Extrapolation       0 16.047320 13.335134 18.75951 0.9540968
## 33  Quadrat.9 464 Extrapolation       0 17.580473  9.232619 25.92833 0.9999996
## 34 Quadrat.10 249   Rarefaction       0  9.992000  8.290606 11.69339 0.9920000
## 35 Quadrat.10 250      Observed       0 10.000000  8.294098 11.70590 0.9920320
## 36 Quadrat.10 251 Extrapolation       0 10.007968  8.297537 11.71840 0.9920639
## 37 Quadrat.10 464 Extrapolation       0 11.147134  8.401703 13.89257 0.9966205
## 38 Quadrat.11 154   Rarefaction       0 13.000000 12.092866 13.90713 1.0000000
## 39 Quadrat.11 155      Observed       0 13.000000 12.089263 13.91074 1.0000000
## 40 Quadrat.11 156 Extrapolation       0 13.000000 12.085892 13.91411 1.0000000
## 41 Quadrat.11 464 Extrapolation       0 13.000000 11.301271 14.69873 1.0000000
##       SC.LCL    SC.UCL
## 1  0.9807097 1.0000000
## 2  0.9803200 1.0000000
## 3  0.9805111 1.0000000
## 4  0.9979543 1.0000000
## 5  0.9973245 1.0000000
## 6  0.9973955 1.0000000
## 7  0.9974079 1.0000000
## 8  0.9976271 1.0000000
## 9  0.9828064 0.9947721
## 10 0.9826517 0.9949519
## 11 0.9826628 0.9949660
## 12 0.9828534 0.9951984
## 13 0.9823993 0.9971925
## 14 0.9819727 0.9976655
## 15 0.9820028 0.9976815
## 16 0.9867142 0.9994494
## 17 0.9778739 1.0000000
## 18 0.9777450 1.0000000
## 19 0.9778665 1.0000000
## 20 0.9896918 1.0000000
## 21 0.9885498 0.9985378
## 22 0.9833145 0.9983928
## 23 0.9830131 0.9988788
## 24 0.9831028 0.9989718
## 25 0.9903798 1.0000000
## 26 0.9940506 1.0000000
## 27 0.9936483 1.0000000
## 28 0.9936750 1.0000000
## 29 0.9944925 1.0000000
## 30 0.9133932 0.9890458
## 31 0.9148614 0.9904986
## 32 0.9162938 0.9918997
## 33 0.9927978 1.0000000
## 34 0.9837699 1.0000000
## 35 0.9838178 1.0000000
## 36 0.9838656 1.0000000
## 37 0.9916129 1.0000000
## 38 0.9896892 1.0000000
## 39 0.9893434 1.0000000
## 40 0.9894506 1.0000000
## 41 0.9988232 1.0000000
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$size_based to view complete output.
## 
## $coverage_based (LCL and UCL are obtained for fixed coverage; interval length is wider due to varying size in bootstraps.)
## 
##    Assemblage        SC   m        Method Order.q        qD    qD.LCL   qD.UCL
## 1   Quadrat.1 0.9924242 130   Rarefaction       0  9.986034  7.764577 12.20749
## 2   Quadrat.1 0.9925382 132      Observed       0 10.000000  7.772151 12.22785
## 3   Quadrat.1 0.9926504 133 Extrapolation       0 10.007462  7.772588 12.24234
## 4   Quadrat.1 0.9999512 464 Extrapolation       0 10.492969  7.752910 13.23303
## 5   Quadrat.2 1.0000000 444      Observed       0 14.000000 12.784774 15.21523
## 6   Quadrat.3 0.9887892 444   Rarefaction       0 13.977826  8.990587 18.96506
## 7   Quadrat.3 0.9888018 446      Observed       0 14.000000  8.997184 19.00282
## 8   Quadrat.3 0.9888144 447 Extrapolation       0 14.011198  9.001456 19.02094
## 9   Quadrat.3 0.9890259 464 Extrapolation       0 14.199656  9.073156 19.32616
## 10  Quadrat.4 0.9897959 292   Rarefaction       0 11.982627  7.379597 16.58566
## 11  Quadrat.4 0.9898191 294      Observed       0 12.000000  7.391706 16.60829
## 12  Quadrat.4 0.9898422 295 Extrapolation       0 12.010181  7.395674 16.62469
## 13  Quadrat.4 0.9930818 464 Extrapolation       0 13.437240  8.146038 18.72844
## 14  Quadrat.5 0.9891697 275   Rarefaction       0 18.983073 13.257451 24.70870
## 15  Quadrat.5 0.9892989 277      Observed       0 19.000000 13.248333 24.75167
## 16  Quadrat.5 0.9894266 278 Extrapolation       0 19.010701 13.232387 24.78902
## 17  Quadrat.5 0.9988664 464 Extrapolation       0 19.801753 11.818525 27.78498
## 18  Quadrat.6 0.9935438 464      Observed       0 10.000000  5.766940 14.23306
## 19  Quadrat.7 0.9908537 327   Rarefaction       0 14.988227 10.657767 19.31869
## 20  Quadrat.7 0.9909460 328      Observed       0 15.000000 10.648579 19.35142
## 21  Quadrat.7 0.9910373 329 Extrapolation       0 15.009054 10.636465 19.38164
## 22  Quadrat.7 0.9977207 464 Extrapolation       0 15.671373  9.412747 21.93000
## 23  Quadrat.8 0.9976636 427   Rarefaction       0 13.996602 11.116092 16.87711
## 24  Quadrat.8 0.9976852 428      Observed       0 14.000000 11.115369 16.88463
## 25  Quadrat.8 0.9977067 429 Extrapolation       0 14.002315 11.113130 16.89150
## 26  Quadrat.8 0.9983453 464 Extrapolation       0 14.071118 11.042228 17.10001
## 27  Quadrat.9 0.9512195  80   Rarefaction       0 15.914285 10.441989 21.38658
## 28  Quadrat.9 0.9526800  82      Observed       0 16.000000 10.417172 21.58283
## 29  Quadrat.9 0.9540968  83 Extrapolation       0 16.047320 10.354421 21.74022
## 30  Quadrat.9 0.9999996 464 Extrapolation       0 17.580473  7.910045 27.25090
## 31 Quadrat.10 0.9920000 248   Rarefaction       0  9.984021  6.932746 13.03530
## 32 Quadrat.10 0.9920320 250      Observed       0 10.000000  6.943785 13.05622
## 33 Quadrat.10 0.9920639 251 Extrapolation       0 10.007968  6.951289 13.06465
## 34 Quadrat.10 0.9966205 464 Extrapolation       0 11.147134  7.372928 14.92134
## 35 Quadrat.11 1.0000000 155      Observed       0 13.000000 11.162828 14.83717
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$coverage_based to view complete output.
## 
## $AsyEst: asymptotic diversity estimates along with related statistics.
##    Assemblage         Diversity  Observed Estimator      s.e.       LCL
## 1   Quadrat.1  Species richness 10.000000 10.496212 1.8658101 10.000000
## 2   Quadrat.1 Shannon diversity  4.909318  5.102191 0.4539404  4.212484
## 3   Quadrat.1 Simpson diversity  3.293762  3.352462 0.3832365  2.601333
## 4  Quadrat.10  Species richness 10.000000 11.992000 2.6386474 10.000000
## 5  Quadrat.10 Shannon diversity  4.373262  4.478543 0.2867359  3.916551
## 6  Quadrat.10 Simpson diversity  3.435954  3.469900 0.1878995  3.101623
## 7  Quadrat.11  Species richness 13.000000 13.000000 0.9557091 13.000000
## 8  Quadrat.11 Shannon diversity  8.680817  9.034744 0.5537079  7.949496
## 9  Quadrat.11 Simpson diversity  6.602088  6.851320 0.6291138  5.618280
## 10  Quadrat.2  Species richness 14.000000 14.000000 0.6264976 14.000000
## 11  Quadrat.2 Shannon diversity  9.824330  9.972034 0.2705378  9.441789
## 12  Quadrat.2 Simpson diversity  8.348268  8.489081 0.3031757  7.894867
## 13  Quadrat.3  Species richness 14.000000 23.977578 6.0060191 14.000000
## 14  Quadrat.3 Shannon diversity  5.827336  5.980165 0.2559723  5.478468
## 15  Quadrat.3 Simpson diversity  4.475856  4.511092 0.1820240  4.154331
## 16  Quadrat.4  Species richness 12.000000 16.484694 5.0006573 12.000000
## 17  Quadrat.4 Shannon diversity  6.330739  6.508285 0.3492677  5.823732
## 18  Quadrat.4 Simpson diversity  4.762839  4.824801 0.3307463  4.176550
## 19  Quadrat.5  Species richness 19.000000 19.896751 5.1768682 19.000000
## 20  Quadrat.5 Shannon diversity  5.076505  5.269242 0.4371688  4.412407
## 21  Quadrat.5 Simpson diversity  2.755773  2.773417 0.2117885  2.358319
## 22  Quadrat.6  Species richness 10.000000 14.490302 4.5490111 10.000000
## 23  Quadrat.6 Shannon diversity  4.290540  4.357068 0.1862755  3.991975
## 24  Quadrat.6 Simpson diversity  3.687712  3.709244 0.1358921  3.442900
## 25  Quadrat.7  Species richness 15.000000 15.897256 3.8069569 15.000000
## 26  Quadrat.7 Shannon diversity  6.415378  6.577376 0.3331446  5.924425
## 27  Quadrat.7 Simpson diversity  4.795151  4.851456 0.3205464  4.223197
## 28  Quadrat.8  Species richness 14.000000 14.249416 2.0237043 14.000000
## 29  Quadrat.8 Shannon diversity  6.244415  6.346618 0.2947184  5.768980
## 30  Quadrat.8 Simpson diversity  4.350337  4.384741 0.2297207  3.934497
## 31  Quadrat.9  Species richness 16.000000 17.580488 5.5039309 16.000000
## 32  Quadrat.9 Shannon diversity  8.450869  9.469144 1.2272833  7.063713
## 33  Quadrat.9 Simpson diversity  5.475570  5.795812 0.8968658  4.037987
##          UCL
## 1  14.153133
## 2   5.991898
## 3   4.103592
## 4  17.163654
## 5   5.040535
## 6   3.838176
## 7  14.873156
## 8  10.119991
## 9   8.084361
## 10 15.227913
## 11 10.502278
## 12  9.083294
## 13 35.749160
## 14  6.481861
## 15  4.867852
## 16 26.285802
## 17  7.192837
## 18  5.473052
## 19 30.043226
## 20  6.126077
## 21  3.188514
## 22 23.406200
## 23  4.722162
## 24  3.975588
## 25 23.358755
## 26  7.230328
## 27  5.479716
## 28 18.215803
## 29  6.924255
## 30  4.834985
## 31 28.367994
## 32 11.874575
## 33  7.553636
s <- c(328)

Barrow_Datas <- iNEXT(Barrow_Nos, q=c(0), datatype= "abundance", size = s)

Barrow_Datas
## Compare 11 assemblages with Hill number order q = 0.
## $class: iNEXT
## 
## $DataInfo: basic data information
##    Assemblage   n S.obs     SC f1 f2 f3 f4 f5 f6 f7 f8 f9 f10
## 1   Quadrat.1 132    10 0.9925  1  1  1  3  0  0  0  1  0   0
## 2   Quadrat.2 444    14 1.0000  0  1  1  0  1  1  0  0  0   0
## 3   Quadrat.3 446    14 0.9888  5  0  0  1  0  0  0  0  0   1
## 4   Quadrat.4 294    12 0.9898  3  1  0  0  0  0  0  1  1   0
## 5   Quadrat.5 277    19 0.9893  3  5  4  1  0  1  0  1  0   0
## 6   Quadrat.6 464    10 0.9935  3  1  1  0  0  0  0  1  0   0
## 7   Quadrat.7 328    15 0.9909  3  5  0  0  0  0  0  0  0   2
## 8   Quadrat.8 428    14 0.9977  1  2  1  0  1  0  1  0  0   0
## 9   Quadrat.9  82    16 0.9527  4  5  2  1  1  1  0  0  0   0
## 10 Quadrat.10 250    10 0.9920  2  1  0  0  3  0  0  0  0   1
## 11 Quadrat.11 155    13 1.0000  0  1  1  3  1  2  0  0  0   0
## 
## $iNextEst: diversity estimates with rarefied and extrapolated samples.
## $size_based (LCL and UCL are obtained for fixed size.)
## 
##    Assemblage   m        Method Order.q        qD    qD.LCL   qD.UCL        SC
## 1   Quadrat.1 131   Rarefaction       0  9.992424  8.505273 11.47958 0.9924242
## 2   Quadrat.1 132      Observed       0 10.000000  8.505237 11.49476 0.9925382
## 3   Quadrat.1 133 Extrapolation       0 10.007462  8.503357 11.51157 0.9926504
## 4   Quadrat.1 328 Extrapolation       0 10.470749  7.559915 13.38158 0.9996171
## 5   Quadrat.2 328   Rarefaction       0 13.913256 13.207845 14.61867 0.9983142
## 6   Quadrat.2 443   Rarefaction       0 14.000000 13.240419 14.75958 1.0000000
## 7   Quadrat.2 444      Observed       0 14.000000 13.239362 14.76064 1.0000000
## 8   Quadrat.2 445 Extrapolation       0 14.000000 13.238481 14.76152 1.0000000
## 9   Quadrat.3 328   Rarefaction       0 12.672411  9.788997 15.55582 0.9886292
## 10  Quadrat.3 445   Rarefaction       0 13.988789 10.316862 17.66072 0.9887892
## 11  Quadrat.3 446      Observed       0 14.000000 10.321716 17.67828 0.9888018
## 12  Quadrat.3 447 Extrapolation       0 14.011198 10.326300 17.69610 0.9888144
## 13  Quadrat.4 293   Rarefaction       0 11.989796  9.224168 14.75542 0.9897959
## 14  Quadrat.4 294      Observed       0 12.000000  9.227061 14.77294 0.9898191
## 15  Quadrat.4 295 Extrapolation       0 12.010181  9.229765 14.79060 0.9898422
## 16  Quadrat.4 328 Extrapolation       0 12.333494  9.306183 15.36080 0.9905762
## 17  Quadrat.5 276   Rarefaction       0 18.989170 16.223364 21.75498 0.9891697
## 18  Quadrat.5 277      Observed       0 19.000000 16.228192 21.77181 0.9892989
## 19  Quadrat.5 278 Extrapolation       0 19.010701 16.232871 21.78853 0.9894266
## 20  Quadrat.5 328 Extrapolation       0 19.410597 16.303323 22.51787 0.9941986
## 21  Quadrat.6 328   Rarefaction       0  9.010393  7.081415 10.93937 0.9917281
## 22  Quadrat.6 463   Rarefaction       0  9.993534  7.740569 12.24650 0.9935345
## 23  Quadrat.6 464      Observed       0 10.000000  7.744694 12.25531 0.9935438
## 24  Quadrat.6 465 Extrapolation       0 10.006456  7.748634 12.26428 0.9935531
## 25  Quadrat.7 328      Observed       0 15.000000 12.835149 17.16485 0.9909460
## 26  Quadrat.8 328   Rarefaction       0 13.644876 12.128853 15.16090 0.9950884
## 27  Quadrat.8 427   Rarefaction       0 13.997664 12.272201 15.72313 0.9976636
## 28  Quadrat.8 428      Observed       0 14.000000 12.272180 15.72782 0.9976852
## 29  Quadrat.8 429 Extrapolation       0 14.002315 12.271829 15.73280 0.9977067
## 30  Quadrat.9  81   Rarefaction       0 15.951220 12.976498 18.92594 0.9512195
## 31  Quadrat.9  82      Observed       0 16.000000 12.999740 19.00026 0.9526800
## 32  Quadrat.9  83 Extrapolation       0 16.047320 13.020945 19.07369 0.9540968
## 33  Quadrat.9 328 Extrapolation       0 17.579594 10.383647 24.77554 0.9999732
## 34 Quadrat.10 249   Rarefaction       0  9.992000  8.159665 11.82433 0.9920000
## 35 Quadrat.10 250      Observed       0 10.000000  8.161391 11.83861 0.9920320
## 36 Quadrat.10 251 Extrapolation       0 10.007968  8.162697 11.85324 0.9920639
## 37 Quadrat.10 328 Extrapolation       0 10.534805  8.192645 12.87696 0.9941712
## 38 Quadrat.11 154   Rarefaction       0 13.000000 12.077251 13.92275 1.0000000
## 39 Quadrat.11 155      Observed       0 13.000000 12.076441 13.92356 1.0000000
## 40 Quadrat.11 156 Extrapolation       0 13.000000 12.074056 13.92594 1.0000000
## 41 Quadrat.11 328 Extrapolation       0 13.000000 11.644009 14.35599 1.0000000
##       SC.LCL    SC.UCL
## 1  0.9773624 1.0000000
## 2  0.9760504 1.0000000
## 3  0.9762691 1.0000000
## 4  0.9938035 1.0000000
## 5  0.9954446 1.0000000
## 6  0.9967981 1.0000000
## 7  0.9967861 1.0000000
## 8  0.9967988 1.0000000
## 9  0.9808797 0.9963787
## 10 0.9815106 0.9960678
## 11 0.9812075 0.9963962
## 12 0.9812243 0.9964045
## 13 0.9805585 0.9990334
## 14 0.9803718 0.9992663
## 15 0.9803997 0.9992847
## 16 0.9813339 0.9998185
## 17 0.9764447 1.0000000
## 18 0.9765550 1.0000000
## 19 0.9766643 1.0000000
## 20 0.9810899 1.0000000
## 21 0.9876796 0.9957766
## 22 0.9890115 0.9980574
## 23 0.9888690 0.9982186
## 24 0.9888777 0.9982284
## 25 0.9831843 0.9987076
## 26 0.9907242 0.9994526
## 27 0.9929244 1.0000000
## 28 0.9926130 1.0000000
## 29 0.9926430 1.0000000
## 30 0.9146820 0.9877570
## 31 0.9151710 0.9901890
## 32 0.9165706 0.9916230
## 33 0.9876544 1.0000000
## 34 0.9835162 1.0000000
## 35 0.9830182 1.0000000
## 36 0.9830741 1.0000000
## 37 0.9867891 1.0000000
## 38 0.9909283 1.0000000
## 39 0.9908148 1.0000000
## 40 0.9909122 1.0000000
## 41 0.9974253 1.0000000
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$size_based to view complete output.
## 
## $coverage_based (LCL and UCL are obtained for fixed coverage; interval length is wider due to varying size in bootstraps.)
## 
##    Assemblage        SC   m        Method Order.q        qD    qD.LCL   qD.UCL
## 1   Quadrat.1 0.9924242 130   Rarefaction       0  9.986034  6.868937 13.10313
## 2   Quadrat.1 0.9925382 132      Observed       0 10.000000  6.873121 13.12688
## 3   Quadrat.1 0.9926504 133 Extrapolation       0 10.007462  6.870550 13.14437
## 4   Quadrat.1 0.9996171 328 Extrapolation       0 10.470749  6.646723 14.29477
## 5   Quadrat.2 0.9983142 328   Rarefaction       0 13.913256 12.817469 15.00904
## 6   Quadrat.2 1.0000000 444      Observed       0 14.000000 12.644334 15.35567
## 7   Quadrat.3 0.9886292 328   Rarefaction       0 12.672411  6.741566 18.60326
## 8   Quadrat.3 0.9887892 444   Rarefaction       0 13.977826  7.818606 20.13704
## 9   Quadrat.3 0.9888018 446      Observed       0 14.000000  7.828402 20.17160
## 10  Quadrat.3 0.9888144 447 Extrapolation       0 14.011198  7.831226 20.19117
## 11  Quadrat.4 0.9897959 292   Rarefaction       0 11.982627  6.117721 17.84753
## 12  Quadrat.4 0.9898191 294      Observed       0 12.000000  6.127184 17.87282
## 13  Quadrat.4 0.9898422 295 Extrapolation       0 12.010181  6.135741 17.88462
## 14  Quadrat.4 0.9905762 328 Extrapolation       0 12.333494  6.241999 18.42499
## 15  Quadrat.5 0.9891697 275   Rarefaction       0 18.983073 11.403606 26.56254
## 16  Quadrat.5 0.9892989 277      Observed       0 19.000000 11.366955 26.63304
## 17  Quadrat.5 0.9894266 278 Extrapolation       0 19.010701 11.324750 26.69665
## 18  Quadrat.5 0.9941986 328 Extrapolation       0 19.410597  9.667177 29.15402
## 19  Quadrat.6 0.9917281 328   Rarefaction       0  9.010393  5.568336 12.45245
## 20  Quadrat.6 0.9935345 462   Rarefaction       0  9.990245  6.262327 13.71816
## 21  Quadrat.6 0.9935438 464      Observed       0 10.000000  6.270095 13.72990
## 22  Quadrat.6 0.9935531 465 Extrapolation       0 10.006456  6.274653 13.73826
## 23  Quadrat.7 0.9909460 328      Observed       0 15.000000 10.714967 19.28503
## 24  Quadrat.8 0.9950884 328   Rarefaction       0 13.644876 11.094071 16.19568
## 25  Quadrat.8 0.9976636 427   Rarefaction       0 13.996602 10.873565 17.11964
## 26  Quadrat.8 0.9976852 428      Observed       0 14.000000 10.870844 17.12916
## 27  Quadrat.8 0.9977067 429 Extrapolation       0 14.002315 10.866852 17.13778
## 28  Quadrat.9 0.9512195  80   Rarefaction       0 15.914285 10.283002 21.54557
## 29  Quadrat.9 0.9526800  82      Observed       0 16.000000 10.273570 21.72643
## 30  Quadrat.9 0.9540968  83 Extrapolation       0 16.047320 10.226327 21.86831
## 31  Quadrat.9 0.9999732 328 Extrapolation       0 17.579594  8.003371 27.15582
## 32 Quadrat.10 0.9920000 248   Rarefaction       0  9.984021  6.725809 13.24223
## 33 Quadrat.10 0.9920320 250      Observed       0 10.000000  6.735570 13.26443
## 34 Quadrat.10 0.9920639 251 Extrapolation       0 10.007968  6.739227 13.27671
## 35 Quadrat.10 0.9941712 328 Extrapolation       0 10.534805  6.857364 14.21225
## 36 Quadrat.11 1.0000000 155      Observed       0 13.000000 11.360016 14.63998
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$coverage_based to view complete output.
## 
## $AsyEst: asymptotic diversity estimates along with related statistics.
##    Assemblage         Diversity  Observed Estimator      s.e.       LCL
## 1   Quadrat.1  Species richness 10.000000 10.496212 2.2720944 10.000000
## 2   Quadrat.1 Shannon diversity  4.909318  5.102191 0.5038599  4.114644
## 3   Quadrat.1 Simpson diversity  3.293762  3.352462 0.3933388  2.581532
## 4  Quadrat.10  Species richness 10.000000 11.992000 3.0936330 10.000000
## 5  Quadrat.10 Shannon diversity  4.373262  4.478543 0.2981740  3.894132
## 6  Quadrat.10 Simpson diversity  3.435954  3.469900 0.1826488  3.111915
## 7  Quadrat.11  Species richness 13.000000 13.000000 0.9087292 13.000000
## 8  Quadrat.11 Shannon diversity  8.680817  9.034744 0.5878580  7.882563
## 9  Quadrat.11 Simpson diversity  6.602088  6.851320 0.6897729  5.499390
## 10  Quadrat.2  Species richness 14.000000 14.000000 0.6154879 14.000000
## 11  Quadrat.2 Shannon diversity  9.824330  9.972034 0.3336444  9.318103
## 12  Quadrat.2 Simpson diversity  8.348268  8.489081 0.3899910  7.724712
## 13  Quadrat.3  Species richness 14.000000 23.977578 6.5262893 14.000000
## 14  Quadrat.3 Shannon diversity  5.827336  5.980165 0.3179413  5.357011
## 15  Quadrat.3 Simpson diversity  4.475856  4.511092 0.1966859  4.125595
## 16  Quadrat.4  Species richness 12.000000 16.484694 3.8561460 12.000000
## 17  Quadrat.4 Shannon diversity  6.330739  6.508285 0.3437554  5.834536
## 18  Quadrat.4 Simpson diversity  4.762839  4.824801 0.3590906  4.120997
## 19  Quadrat.5  Species richness 19.000000 19.896751 4.6659488 19.000000
## 20  Quadrat.5 Shannon diversity  5.076505  5.269242 0.4587390  4.370130
## 21  Quadrat.5 Simpson diversity  2.755773  2.773417 0.2308451  2.320968
## 22  Quadrat.6  Species richness 10.000000 14.490302 4.7091346 10.000000
## 23  Quadrat.6 Shannon diversity  4.290540  4.357068 0.1674727  4.028828
## 24  Quadrat.6 Simpson diversity  3.687712  3.709244 0.1240693  3.466073
## 25  Quadrat.7  Species richness 15.000000 15.897256 4.2344799 15.000000
## 26  Quadrat.7 Shannon diversity  6.415378  6.577376 0.3749127  5.842561
## 27  Quadrat.7 Simpson diversity  4.795151  4.851456 0.3339093  4.197006
## 28  Quadrat.8  Species richness 14.000000 14.249416 2.1598625 14.000000
## 29  Quadrat.8 Shannon diversity  6.244415  6.346618 0.3259255  5.707815
## 30  Quadrat.8 Simpson diversity  4.350337  4.384741 0.2585455  3.878001
## 31  Quadrat.9  Species richness 16.000000 17.580488 6.3795661 16.000000
## 32  Quadrat.9 Shannon diversity  8.450869  9.469144 1.1863898  7.143863
## 33  Quadrat.9 Simpson diversity  5.475570  5.795812 0.8736309  4.083526
##          UCL
## 1  14.949435
## 2   6.089738
## 3   4.123392
## 4  18.055409
## 5   5.062953
## 6   3.827885
## 7  14.781076
## 8  10.186924
## 9   8.203250
## 10 15.206334
## 11 10.625964
## 12  9.253449
## 13 36.768871
## 14  6.603318
## 15  4.896589
## 16 24.042601
## 17  7.182033
## 18  5.528606
## 19 29.041842
## 20  6.168354
## 21  3.225865
## 22 23.720036
## 23  4.685309
## 24  3.952415
## 25 24.196684
## 26  7.312192
## 27  5.505907
## 28 18.482669
## 29  6.985420
## 30  4.891481
## 31 30.084208
## 32 11.794426
## 33  7.508097
t <- c(428)

Barrow_Datat <- iNEXT(Barrow_Nos, q=c(0), datatype= "abundance", size = t)

Barrow_Datat
## Compare 11 assemblages with Hill number order q = 0.
## $class: iNEXT
## 
## $DataInfo: basic data information
##    Assemblage   n S.obs     SC f1 f2 f3 f4 f5 f6 f7 f8 f9 f10
## 1   Quadrat.1 132    10 0.9925  1  1  1  3  0  0  0  1  0   0
## 2   Quadrat.2 444    14 1.0000  0  1  1  0  1  1  0  0  0   0
## 3   Quadrat.3 446    14 0.9888  5  0  0  1  0  0  0  0  0   1
## 4   Quadrat.4 294    12 0.9898  3  1  0  0  0  0  0  1  1   0
## 5   Quadrat.5 277    19 0.9893  3  5  4  1  0  1  0  1  0   0
## 6   Quadrat.6 464    10 0.9935  3  1  1  0  0  0  0  1  0   0
## 7   Quadrat.7 328    15 0.9909  3  5  0  0  0  0  0  0  0   2
## 8   Quadrat.8 428    14 0.9977  1  2  1  0  1  0  1  0  0   0
## 9   Quadrat.9  82    16 0.9527  4  5  2  1  1  1  0  0  0   0
## 10 Quadrat.10 250    10 0.9920  2  1  0  0  3  0  0  0  0   1
## 11 Quadrat.11 155    13 1.0000  0  1  1  3  1  2  0  0  0   0
## 
## $iNextEst: diversity estimates with rarefied and extrapolated samples.
## $size_based (LCL and UCL are obtained for fixed size.)
## 
##    Assemblage   m        Method Order.q        qD    qD.LCL   qD.UCL        SC
## 1   Quadrat.1 131   Rarefaction       0  9.992424  8.318170 11.66668 0.9924242
## 2   Quadrat.1 132      Observed       0 10.000000  8.321899 11.67810 0.9925382
## 3   Quadrat.1 133 Extrapolation       0 10.007462  8.325072 11.68985 0.9926504
## 4   Quadrat.1 428 Extrapolation       0 10.490616  7.078807 13.90242 0.9999158
## 5   Quadrat.2 428   Rarefaction       0 13.998741 13.249230 14.74825 0.9998402
## 6   Quadrat.2 443   Rarefaction       0 14.000000 13.240110 14.75989 1.0000000
## 7   Quadrat.2 444      Observed       0 14.000000 13.239362 14.76064 1.0000000
## 8   Quadrat.2 445 Extrapolation       0 14.000000 13.238984 14.76102 1.0000000
## 9   Quadrat.3 428   Rarefaction       0 13.798204 11.482958 16.11345 0.9887888
## 10  Quadrat.3 445   Rarefaction       0 13.988789 11.585405 16.39217 0.9887892
## 11  Quadrat.3 446      Observed       0 14.000000 11.591393 16.40861 0.9888018
## 12  Quadrat.3 447 Extrapolation       0 14.011198 11.597235 16.42516 0.9888144
## 13  Quadrat.4 293   Rarefaction       0 11.989796  9.496405 14.48319 0.9897959
## 14  Quadrat.4 294      Observed       0 12.000000  9.499096 14.50090 0.9898191
## 15  Quadrat.4 295 Extrapolation       0 12.010181  9.501486 14.51888 0.9898422
## 16  Quadrat.4 428 Extrapolation       0 13.177419  9.674029 16.68081 0.9924920
## 17  Quadrat.5 276   Rarefaction       0 18.989170 16.710353 21.26799 0.9891697
## 18  Quadrat.5 277      Observed       0 19.000000 16.715338 21.28466 0.9892989
## 19  Quadrat.5 278 Extrapolation       0 19.010701 16.720167 21.30123 0.9894266
## 20  Quadrat.5 428 Extrapolation       0 19.750396 16.410148 23.09064 0.9982535
## 21  Quadrat.6 428   Rarefaction       0  9.760945  7.528654 11.99324 0.9931727
## 22  Quadrat.6 463   Rarefaction       0  9.993534  7.588640 12.39843 0.9935345
## 23  Quadrat.6 464      Observed       0 10.000000  7.590092 12.40991 0.9935438
## 24  Quadrat.6 465 Extrapolation       0 10.006456  7.591168 12.42174 0.9935531
## 25  Quadrat.7 327   Rarefaction       0 14.990854 12.300885 17.68082 0.9908537
## 26  Quadrat.7 328      Observed       0 15.000000 12.305931 17.69407 0.9909460
## 27  Quadrat.7 329 Extrapolation       0 15.009054 12.310686 17.70742 0.9910373
## 28  Quadrat.7 428 Extrapolation       0 15.571831 12.435472 18.70819 0.9967162
## 29  Quadrat.8 428      Observed       0 14.000000 12.152883 15.84712 0.9976852
## 30  Quadrat.9  81   Rarefaction       0 15.951220 13.095669 18.80677 0.9512195
## 31  Quadrat.9  82      Observed       0 16.000000 13.123811 18.87619 0.9526800
## 32  Quadrat.9  83 Extrapolation       0 16.047320 13.150437 18.94420 0.9540968
## 33  Quadrat.9 428 Extrapolation       0 17.580445  8.467736 26.69315 0.9999987
## 34 Quadrat.10 249   Rarefaction       0  9.992000  8.391687 11.59231 0.9920000
## 35 Quadrat.10 250      Observed       0 10.000000  8.394479 11.60552 0.9920320
## 36 Quadrat.10 251 Extrapolation       0 10.007968  8.396625 11.61931 0.9920639
## 37 Quadrat.10 428 Extrapolation       0 11.015996  8.323267 13.70872 0.9960960
## 38 Quadrat.11 154   Rarefaction       0 13.000000 11.997007 14.00299 1.0000000
## 39 Quadrat.11 155      Observed       0 13.000000 11.995134 14.00487 1.0000000
## 40 Quadrat.11 156 Extrapolation       0 13.000000 11.992818 14.00718 1.0000000
## 41 Quadrat.11 428 Extrapolation       0 13.000000 11.275197 14.72480 1.0000000
##       SC.LCL    SC.UCL
## 1  0.9762115 1.0000000
## 2  0.9758477 1.0000000
## 3  0.9760371 1.0000000
## 4  0.9955848 1.0000000
## 5  0.9973882 1.0000000
## 6  0.9975156 1.0000000
## 7  0.9978807 1.0000000
## 8  0.9978887 1.0000000
## 9  0.9826963 0.9948814
## 10 0.9826120 0.9949665
## 11 0.9824657 0.9951380
## 12 0.9824800 0.9951488
## 13 0.9811456 0.9984462
## 14 0.9809701 0.9986681
## 15 0.9810006 0.9986838
## 16 0.9847445 1.0000000
## 17 0.9767076 1.0000000
## 18 0.9768197 1.0000000
## 19 0.9769317 1.0000000
## 20 0.9880834 1.0000000
## 21 0.9868909 0.9994544
## 22 0.9870938 0.9999752
## 23 0.9866927 1.0000000
## 24 0.9867041 1.0000000
## 25 0.9830066 0.9987007
## 26 0.9829023 0.9989896
## 27 0.9829978 0.9990768
## 28 0.9893062 1.0000000
## 29 0.9926449 1.0000000
## 30 0.9108293 0.9916097
## 31 0.9120867 0.9932733
## 32 0.9133189 0.9948747
## 33 0.9894076 1.0000000
## 34 0.9826282 1.0000000
## 35 0.9821634 1.0000000
## 36 0.9822179 1.0000000
## 37 0.9894821 1.0000000
## 38 0.9907890 1.0000000
## 39 0.9903299 1.0000000
## 40 0.9904222 1.0000000
## 41 0.9980435 1.0000000
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$size_based to view complete output.
## 
## $coverage_based (LCL and UCL are obtained for fixed coverage; interval length is wider due to varying size in bootstraps.)
## 
##    Assemblage        SC   m        Method Order.q        qD    qD.LCL   qD.UCL
## 1   Quadrat.1 0.9924242 130   Rarefaction       0  9.986034  6.634028 13.33804
## 2   Quadrat.1 0.9925382 132      Observed       0 10.000000  6.636486 13.36351
## 3   Quadrat.1 0.9926504 133 Extrapolation       0 10.007462  6.632619 13.38231
## 4   Quadrat.1 0.9999158 428 Extrapolation       0 10.490616  6.308141 14.67309
## 5   Quadrat.2 0.9998402 428   Rarefaction       0 13.998741 12.934766 15.06272
## 6   Quadrat.2 1.0000000 444      Observed       0 14.000000 12.916484 15.08352
## 7   Quadrat.3 0.9887888 428   Rarefaction       0 13.798204  9.063386 18.53302
## 8   Quadrat.3 0.9887892 444   Rarefaction       0 13.977826  9.231975 18.72368
## 9   Quadrat.3 0.9888018 446      Observed       0 14.000000  9.244812 18.75519
## 10  Quadrat.3 0.9888144 447 Extrapolation       0 14.011198  9.248851 18.77354
## 11  Quadrat.4 0.9897959 292   Rarefaction       0 11.982627  6.746636 17.21862
## 12  Quadrat.4 0.9898191 294      Observed       0 12.000000  6.756279 17.24372
## 13  Quadrat.4 0.9898422 295 Extrapolation       0 12.010181  6.759139 17.26122
## 14  Quadrat.4 0.9924920 428 Extrapolation       0 13.177419  7.119592 19.23525
## 15  Quadrat.5 0.9891697 275   Rarefaction       0 18.983073 13.913411 24.05273
## 16  Quadrat.5 0.9892989 277      Observed       0 19.000000 13.904888 24.09511
## 17  Quadrat.5 0.9894266 278 Extrapolation       0 19.010701 13.890078 24.13132
## 18  Quadrat.5 0.9982535 428 Extrapolation       0 19.750396 12.554588 26.94620
## 19  Quadrat.6 0.9931727 428   Rarefaction       0  9.760945  2.911514 16.61038
## 20  Quadrat.6 0.9935345 462   Rarefaction       0  9.990245  2.982796 16.99769
## 21  Quadrat.6 0.9935438 464      Observed       0 10.000000  2.986730 17.01327
## 22  Quadrat.6 0.9935531 465 Extrapolation       0 10.006456  2.988719 17.02419
## 23  Quadrat.7 0.9908537 327   Rarefaction       0 14.988227 10.390811 19.58564
## 24  Quadrat.7 0.9909460 328      Observed       0 15.000000 10.383406 19.61659
## 25  Quadrat.7 0.9910373 329 Extrapolation       0 15.009054 10.373515 19.64459
## 26  Quadrat.7 0.9967162 428 Extrapolation       0 15.571831  9.566506 21.57715
## 27  Quadrat.8 0.9976852 428      Observed       0 14.000000 10.505551 17.49445
## 28  Quadrat.9 0.9512195  80   Rarefaction       0 15.914285 10.073691 21.75488
## 29  Quadrat.9 0.9526800  82      Observed       0 16.000000 10.034076 21.96592
## 30  Quadrat.9 0.9540968  83 Extrapolation       0 16.047320  9.953377 22.14126
## 31  Quadrat.9 0.9999987 428 Extrapolation       0 17.580445  6.402644 28.75825
## 32 Quadrat.10 0.9920000 248   Rarefaction       0  9.984021  6.547856 13.42019
## 33 Quadrat.10 0.9920320 250      Observed       0 10.000000  6.557477 13.44252
## 34 Quadrat.10 0.9920639 251 Extrapolation       0 10.007968  6.561909 13.45403
## 35 Quadrat.10 0.9960960 428 Extrapolation       0 11.015996  6.786523 15.24547
## 36 Quadrat.11 1.0000000 155      Observed       0 13.000000 10.962678 15.03732
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$coverage_based to view complete output.
## 
## $AsyEst: asymptotic diversity estimates along with related statistics.
##    Assemblage         Diversity  Observed Estimator      s.e.       LCL
## 1   Quadrat.1  Species richness 10.000000 10.496212 2.0096881 10.000000
## 2   Quadrat.1 Shannon diversity  4.909318  5.102191 0.5282861  4.066769
## 3   Quadrat.1 Simpson diversity  3.293762  3.352462 0.4275342  2.514510
## 4  Quadrat.10  Species richness 10.000000 11.992000 2.6996880 10.000000
## 5  Quadrat.10 Shannon diversity  4.373262  4.478543 0.2992353  3.892052
## 6  Quadrat.10 Simpson diversity  3.435954  3.469900 0.2008503  3.076240
## 7  Quadrat.11  Species richness 13.000000 13.000000 0.8838920 13.000000
## 8  Quadrat.11 Shannon diversity  8.680817  9.034744 0.6332143  7.793667
## 9  Quadrat.11 Simpson diversity  6.602088  6.851320 0.7041444  5.471223
## 10  Quadrat.2  Species richness 14.000000 14.000000 0.5771965 14.000000
## 11  Quadrat.2 Shannon diversity  9.824330  9.972034 0.3627830  9.260992
## 12  Quadrat.2 Simpson diversity  8.348268  8.489081 0.4170912  7.671597
## 13  Quadrat.3  Species richness 14.000000 23.977578 6.3729342 14.000000
## 14  Quadrat.3 Shannon diversity  5.827336  5.980165 0.2801748  5.431032
## 15  Quadrat.3 Simpson diversity  4.475856  4.511092 0.1873403  4.143912
## 16  Quadrat.4  Species richness 12.000000 16.484694 4.6986418 12.000000
## 17  Quadrat.4 Shannon diversity  6.330739  6.508285 0.3153488  5.890212
## 18  Quadrat.4 Simpson diversity  4.762839  4.824801 0.3356623  4.166915
## 19  Quadrat.5  Species richness 19.000000 19.896751 4.4252690 19.000000
## 20  Quadrat.5 Shannon diversity  5.076505  5.269242 0.4713613  4.345390
## 21  Quadrat.5 Simpson diversity  2.755773  2.773417 0.2335930  2.315583
## 22  Quadrat.6  Species richness 10.000000 14.490302 4.7271199 10.000000
## 23  Quadrat.6 Shannon diversity  4.290540  4.357068 0.1683551  4.027098
## 24  Quadrat.6 Simpson diversity  3.687712  3.709244 0.1209790  3.472130
## 25  Quadrat.7  Species richness 15.000000 15.897256 5.2418188 15.000000
## 26  Quadrat.7 Shannon diversity  6.415378  6.577376 0.3066547  5.976344
## 27  Quadrat.7 Simpson diversity  4.795151  4.851456 0.2673677  4.327425
## 28  Quadrat.8  Species richness 14.000000 14.249416 2.1021535 14.000000
## 29  Quadrat.8 Shannon diversity  6.244415  6.346618 0.3161426  5.726989
## 30  Quadrat.8 Simpson diversity  4.350337  4.384741 0.2276458  3.938563
## 31  Quadrat.9  Species richness 16.000000 17.580488 5.8534683 16.000000
## 32  Quadrat.9 Shannon diversity  8.450869  9.469144 1.1017846  7.309686
## 33  Quadrat.9 Simpson diversity  5.475570  5.795812 0.8746031  4.081621
##          UCL
## 1  14.435128
## 2   6.137613
## 3   4.190414
## 4  17.283291
## 5   5.065033
## 6   3.863559
## 7  14.732396
## 8  10.275821
## 9   8.231418
## 10 15.131284
## 11 10.683075
## 12  9.306564
## 13 36.468300
## 14  6.529297
## 15  4.878272
## 16 25.693863
## 17  7.126357
## 18  5.482687
## 19 28.570119
## 20  6.193093
## 21  3.231250
## 22 23.755286
## 23  4.687038
## 24  3.946359
## 25 26.171032
## 26  7.178408
## 27  5.375488
## 28 18.369561
## 29  6.966246
## 30  4.830918
## 31 29.053075
## 32 11.628603
## 33  7.510002
u <- c(82)

Barrow_Datau <- iNEXT(Barrow_Nos, q=c(0), datatype= "abundance", size = u)

Barrow_Datau
## Compare 11 assemblages with Hill number order q = 0.
## $class: iNEXT
## 
## $DataInfo: basic data information
##    Assemblage   n S.obs     SC f1 f2 f3 f4 f5 f6 f7 f8 f9 f10
## 1   Quadrat.1 132    10 0.9925  1  1  1  3  0  0  0  1  0   0
## 2   Quadrat.2 444    14 1.0000  0  1  1  0  1  1  0  0  0   0
## 3   Quadrat.3 446    14 0.9888  5  0  0  1  0  0  0  0  0   1
## 4   Quadrat.4 294    12 0.9898  3  1  0  0  0  0  0  1  1   0
## 5   Quadrat.5 277    19 0.9893  3  5  4  1  0  1  0  1  0   0
## 6   Quadrat.6 464    10 0.9935  3  1  1  0  0  0  0  1  0   0
## 7   Quadrat.7 328    15 0.9909  3  5  0  0  0  0  0  0  0   2
## 8   Quadrat.8 428    14 0.9977  1  2  1  0  1  0  1  0  0   0
## 9   Quadrat.9  82    16 0.9527  4  5  2  1  1  1  0  0  0   0
## 10 Quadrat.10 250    10 0.9920  2  1  0  0  3  0  0  0  0   1
## 11 Quadrat.11 155    13 1.0000  0  1  1  3  1  2  0  0  0   0
## 
## $iNextEst: diversity estimates with rarefied and extrapolated samples.
## $size_based (LCL and UCL are obtained for fixed size.)
## 
##    Assemblage   m        Method Order.q        qD    qD.LCL    qD.UCL        SC
## 1   Quadrat.1  82   Rarefaction       0  9.369742  8.060285 10.679199 0.9789969
## 2   Quadrat.1 131   Rarefaction       0  9.992424  8.253920 11.730929 0.9924242
## 3   Quadrat.1 132      Observed       0 10.000000  8.251881 11.748119 0.9925382
## 4   Quadrat.1 133 Extrapolation       0 10.007462  8.249051 11.765873 0.9926504
## 5   Quadrat.2  82   Rarefaction       0 12.036400 11.394132 12.678668 0.9778099
## 6   Quadrat.2 443   Rarefaction       0 14.000000 13.208096 14.791904 1.0000000
## 7   Quadrat.2 444      Observed       0 14.000000 13.208055 14.791945 1.0000000
## 8   Quadrat.2 445 Extrapolation       0 14.000000 13.207654 14.792346 1.0000000
## 9   Quadrat.3  82   Rarefaction       0  9.243779  8.462457 10.025101 0.9756266
## 10  Quadrat.3 445   Rarefaction       0 13.988789 11.057347 16.920232 0.9887892
## 11  Quadrat.3 446      Observed       0 14.000000 11.064457 16.935543 0.9888018
## 12  Quadrat.3 447 Extrapolation       0 14.011198 11.071192 16.951204 0.9888144
## 13  Quadrat.4  82   Rarefaction       0  9.193435  7.998235 10.388636 0.9798275
## 14  Quadrat.4 293   Rarefaction       0 11.989796  9.258922 14.720670 0.9897959
## 15  Quadrat.4 294      Observed       0 12.000000  9.263489 14.736511 0.9898191
## 16  Quadrat.4 295 Extrapolation       0 12.010181  9.267460 14.752902 0.9898422
## 17  Quadrat.5  82   Rarefaction       0 12.591493 11.117509 14.065478 0.9305785
## 18  Quadrat.5 276   Rarefaction       0 18.989170 15.964087 22.014252 0.9891697
## 19  Quadrat.5 277      Observed       0 19.000000 15.966478 22.033522 0.9892989
## 20  Quadrat.5 278 Extrapolation       0 19.010701 15.968740 22.052662 0.9894266
## 21  Quadrat.6  82   Rarefaction       0  6.087174  5.197647  6.976701 0.9812474
## 22  Quadrat.6 463   Rarefaction       0  9.993534  6.856235 13.130834 0.9935345
## 23  Quadrat.6 464      Observed       0 10.000000  6.858063 13.141937 0.9935438
## 24  Quadrat.6 465 Extrapolation       0 10.006456  6.859882 13.153030 0.9935531
## 25  Quadrat.7  82   Rarefaction       0  9.832873  8.683172 10.982573 0.9636396
## 26  Quadrat.7 327   Rarefaction       0 14.990854 12.489892 17.491815 0.9908537
## 27  Quadrat.7 328      Observed       0 15.000000 12.495650 17.504350 0.9909460
## 28  Quadrat.7 329 Extrapolation       0 15.009054 12.501321 17.516787 0.9910373
## 29  Quadrat.8  82   Rarefaction       0 10.638591  9.769800 11.507381 0.9694677
## 30  Quadrat.8 427   Rarefaction       0 13.997664 12.076952 15.918375 0.9976636
## 31  Quadrat.8 428      Observed       0 14.000000 12.078003 15.921997 0.9976852
## 32  Quadrat.8 429 Extrapolation       0 14.002315 12.078457 15.926172 0.9977067
## 33  Quadrat.9  82      Observed       0 16.000000 13.231305 18.768695 0.9526800
## 34 Quadrat.10  82   Rarefaction       0  7.785099  6.778428  8.791771 0.9736181
## 35 Quadrat.10 249   Rarefaction       0  9.992000  8.334386 11.649614 0.9920000
## 36 Quadrat.10 250      Observed       0 10.000000  8.338330 11.661670 0.9920320
## 37 Quadrat.10 251 Extrapolation       0 10.007968  8.340977 11.674959 0.9920639
## 38 Quadrat.11  82   Rarefaction       0 12.495443 11.458988 13.531898 0.9789548
## 39 Quadrat.11 154   Rarefaction       0 13.000000 12.046501 13.953499 1.0000000
## 40 Quadrat.11 155      Observed       0 13.000000 12.045550 13.954450 1.0000000
## 41 Quadrat.11 156 Extrapolation       0 13.000000 12.044584 13.955416 1.0000000
##       SC.LCL    SC.UCL
## 1  0.9619928 0.9960011
## 2  0.9748710 1.0000000
## 3  0.9743526 1.0000000
## 4  0.9745468 1.0000000
## 5  0.9727233 0.9828965
## 6  0.9976003 1.0000000
## 7  0.9980788 1.0000000
## 8  0.9980889 1.0000000
## 9  0.9659112 0.9853419
## 10 0.9832051 0.9943734
## 11 0.9828478 0.9947558
## 12 0.9828622 0.9947665
## 13 0.9680507 0.9916043
## 14 0.9814759 0.9981159
## 15 0.9809110 0.9987271
## 16 0.9809489 0.9987355
## 17 0.9173958 0.9437612
## 18 0.9773048 1.0000000
## 19 0.9774362 1.0000000
## 20 0.9775663 1.0000000
## 21 0.9715287 0.9909661
## 22 0.9874395 0.9996295
## 23 0.9874505 0.9996370
## 24 0.9874616 0.9996445
## 25 0.9527135 0.9745657
## 26 0.9832913 0.9984160
## 27 0.9833893 0.9985026
## 28 0.9834863 0.9985883
## 29 0.9609891 0.9779463
## 30 0.9938255 1.0000000
## 31 0.9934649 1.0000000
## 32 0.9934945 1.0000000
## 33 0.9133817 0.9919783
## 34 0.9654676 0.9817685
## 35 0.9851160 0.9988840
## 36 0.9840984 0.9999656
## 37 0.9841615 0.9999662
## 38 0.9676926 0.9902171
## 39 0.9905927 1.0000000
## 40 0.9901316 1.0000000
## 41 0.9902342 1.0000000
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$size_based to view complete output.
## 
## $coverage_based (LCL and UCL are obtained for fixed coverage; interval length is wider due to varying size in bootstraps.)
## 
##    Assemblage        SC   m        Method Order.q        qD    qD.LCL    qD.UCL
## 1   Quadrat.1 0.9789970  82   Rarefaction       0  9.369742  6.577081 12.162403
## 2   Quadrat.1 0.9924242 130   Rarefaction       0  9.986034  5.768569 14.203499
## 3   Quadrat.1 0.9925382 132      Observed       0 10.000000  5.768994 14.231006
## 4   Quadrat.1 0.9926504 133 Extrapolation       0 10.007462  5.763529 14.251394
## 5   Quadrat.2 0.9778099  82   Rarefaction       0 12.036400 11.201216 12.871584
## 6   Quadrat.2 1.0000000 444      Observed       0 14.000000 13.044641 14.955359
## 7   Quadrat.3 0.9756266  82   Rarefaction       0  9.243779  7.700521 10.787038
## 8   Quadrat.3 0.9887892 444   Rarefaction       0 13.977826  9.707920 18.247732
## 9   Quadrat.3 0.9888018 446      Observed       0 14.000000  9.722908 18.277092
## 10  Quadrat.3 0.9888144 447 Extrapolation       0 14.011198  9.727389 18.295007
## 11  Quadrat.4 0.9798275  82   Rarefaction       0  9.193435  6.785843 11.601027
## 12  Quadrat.4 0.9897959 292   Rarefaction       0 11.982627  7.531505 16.433749
## 13  Quadrat.4 0.9898191 294      Observed       0 12.000000  7.542066 16.457934
## 14  Quadrat.4 0.9898422 295 Extrapolation       0 12.010181  7.549541 16.470821
## 15  Quadrat.5 0.9305786  82   Rarefaction       0 12.591494 10.274886 14.908102
## 16  Quadrat.5 0.9891697 275   Rarefaction       0 18.983073 11.520071 26.446075
## 17  Quadrat.5 0.9892989 277      Observed       0 19.000000 11.496396 26.503604
## 18  Quadrat.5 0.9894266 278 Extrapolation       0 19.010701 11.466615 26.554788
## 19  Quadrat.6 0.9812474  82   Rarefaction       0  6.087174  3.530341  8.644007
## 20  Quadrat.6 0.9935345 462   Rarefaction       0  9.990245  2.632035 17.348454
## 21  Quadrat.6 0.9935438 464      Observed       0 10.000000  2.637192 17.362808
## 22  Quadrat.6 0.9935531 465 Extrapolation       0 10.006456  2.641117 17.371795
## 23  Quadrat.7 0.9636396  82   Rarefaction       0  9.832873  7.901993 11.763753
## 24  Quadrat.7 0.9908537 327   Rarefaction       0 14.988227 11.139966 18.836489
## 25  Quadrat.7 0.9909460 328      Observed       0 15.000000 11.136154 18.863846
## 26  Quadrat.7 0.9910373 329 Extrapolation       0 15.009054 11.129361 18.888747
## 27  Quadrat.8 0.9694677  82   Rarefaction       0 10.638590  9.330419 11.946762
## 28  Quadrat.8 0.9976636 427   Rarefaction       0 13.996602 11.127459 16.865745
## 29  Quadrat.8 0.9976852 428      Observed       0 14.000000 11.125006 16.874994
## 30  Quadrat.8 0.9977067 429 Extrapolation       0 14.002315 11.121488 16.883142
## 31  Quadrat.9 0.9526800  82      Observed       0 16.000000  9.551156 22.448844
## 32 Quadrat.10 0.9736181  82   Rarefaction       0  7.785099  6.416534  9.153665
## 33 Quadrat.10 0.9920000 248   Rarefaction       0  9.984021  7.465075 12.502966
## 34 Quadrat.10 0.9920320 250      Observed       0 10.000000  7.477525 12.522475
## 35 Quadrat.10 0.9920639 251 Extrapolation       0 10.007968  7.480343 12.535593
## 36 Quadrat.11 0.9789548  82   Rarefaction       0 12.495442 11.503952 13.486933
## 37 Quadrat.11 1.0000000 155      Observed       0 13.000000 11.396624 14.603376
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$coverage_based to view complete output.
## 
## $AsyEst: asymptotic diversity estimates along with related statistics.
##    Assemblage         Diversity  Observed Estimator      s.e.       LCL
## 1   Quadrat.1  Species richness 10.000000 10.496212 1.6407546 10.000000
## 2   Quadrat.1 Shannon diversity  4.909318  5.102191 0.4803391  4.160744
## 3   Quadrat.1 Simpson diversity  3.293762  3.352462 0.4235033  2.522411
## 4  Quadrat.10  Species richness 10.000000 11.992000 2.2117318 10.000000
## 5  Quadrat.10 Shannon diversity  4.373262  4.478543 0.3111456  3.868709
## 6  Quadrat.10 Simpson diversity  3.435954  3.469900 0.2063799  3.065402
## 7  Quadrat.11  Species richness 13.000000 13.000000 0.8619469 13.000000
## 8  Quadrat.11 Shannon diversity  8.680817  9.034744 0.5540871  7.948753
## 9  Quadrat.11 Simpson diversity  6.602088  6.851320 0.6273053  5.621824
## 10  Quadrat.2  Species richness 14.000000 14.000000 0.6570164 14.000000
## 11  Quadrat.2 Shannon diversity  9.824330  9.972034 0.3420030  9.301720
## 12  Quadrat.2 Simpson diversity  8.348268  8.489081 0.3667967  7.770172
## 13  Quadrat.3  Species richness 14.000000 23.977578 6.7517676 14.000000
## 14  Quadrat.3 Shannon diversity  5.827336  5.980165 0.3188289  5.355271
## 15  Quadrat.3 Simpson diversity  4.475856  4.511092 0.2238087  4.072435
## 16  Quadrat.4  Species richness 12.000000 16.484694 4.5098474 12.000000
## 17  Quadrat.4 Shannon diversity  6.330739  6.508285 0.3754642  5.772388
## 18  Quadrat.4 Simpson diversity  4.762839  4.824801 0.3548085  4.129389
## 19  Quadrat.5  Species richness 19.000000 19.896751 4.4017252 19.000000
## 20  Quadrat.5 Shannon diversity  5.076505  5.269242 0.4578967  4.371781
## 21  Quadrat.5 Simpson diversity  2.755773  2.773417 0.2279265  2.326689
## 22  Quadrat.6  Species richness 10.000000 14.490302 4.5840538 10.000000
## 23  Quadrat.6 Shannon diversity  4.290540  4.357068 0.1708795  4.022151
## 24  Quadrat.6 Simpson diversity  3.687712  3.709244 0.1347404  3.445158
## 25  Quadrat.7  Species richness 15.000000 15.897256 4.5802232 15.000000
## 26  Quadrat.7 Shannon diversity  6.415378  6.577376 0.3626582  5.866579
## 27  Quadrat.7 Simpson diversity  4.795151  4.851456 0.3315847  4.201562
## 28  Quadrat.8  Species richness 14.000000 14.249416 2.2329357 14.000000
## 29  Quadrat.8 Shannon diversity  6.244415  6.346618 0.3433493  5.673665
## 30  Quadrat.8 Simpson diversity  4.350337  4.384741 0.2564229  3.882161
## 31  Quadrat.9  Species richness 16.000000 17.580488 6.8518863 16.000000
## 32  Quadrat.9 Shannon diversity  8.450869  9.469144 1.2928016  6.935300
## 33  Quadrat.9 Simpson diversity  5.475570  5.795812 0.8860144  4.059255
##          UCL
## 1  13.712032
## 2   6.043638
## 3   4.182513
## 4  16.326915
## 5   5.088377
## 6   3.874397
## 7  14.689385
## 8  10.120735
## 9   8.080816
## 10 15.287728
## 11 10.642347
## 12  9.207989
## 13 37.210800
## 14  6.605058
## 15  4.949749
## 16 25.323832
## 17  7.244181
## 18  5.520213
## 19 28.523974
## 20  6.166703
## 21  3.220144
## 22 23.474882
## 23  4.691986
## 24  3.973330
## 25 24.874329
## 26  7.288173
## 27  5.501351
## 28 18.625889
## 29  7.019570
## 30  4.887320
## 31 31.009938
## 32 12.002989
## 33  7.532368
v <- c(250)

Barrow_Datav <- iNEXT(Barrow_Nos, q=c(0), datatype= "abundance", size = v)

Barrow_Datav
## Compare 11 assemblages with Hill number order q = 0.
## $class: iNEXT
## 
## $DataInfo: basic data information
##    Assemblage   n S.obs     SC f1 f2 f3 f4 f5 f6 f7 f8 f9 f10
## 1   Quadrat.1 132    10 0.9925  1  1  1  3  0  0  0  1  0   0
## 2   Quadrat.2 444    14 1.0000  0  1  1  0  1  1  0  0  0   0
## 3   Quadrat.3 446    14 0.9888  5  0  0  1  0  0  0  0  0   1
## 4   Quadrat.4 294    12 0.9898  3  1  0  0  0  0  0  1  1   0
## 5   Quadrat.5 277    19 0.9893  3  5  4  1  0  1  0  1  0   0
## 6   Quadrat.6 464    10 0.9935  3  1  1  0  0  0  0  1  0   0
## 7   Quadrat.7 328    15 0.9909  3  5  0  0  0  0  0  0  0   2
## 8   Quadrat.8 428    14 0.9977  1  2  1  0  1  0  1  0  0   0
## 9   Quadrat.9  82    16 0.9527  4  5  2  1  1  1  0  0  0   0
## 10 Quadrat.10 250    10 0.9920  2  1  0  0  3  0  0  0  0   1
## 11 Quadrat.11 155    13 1.0000  0  1  1  3  1  2  0  0  0   0
## 
## $iNextEst: diversity estimates with rarefied and extrapolated samples.
## $size_based (LCL and UCL are obtained for fixed size.)
## 
##    Assemblage   m        Method Order.q        qD    qD.LCL   qD.UCL        SC
## 1   Quadrat.1 131   Rarefaction       0  9.992424  8.184606 11.80024 0.9924242
## 2   Quadrat.1 132      Observed       0 10.000000  8.185426 11.81457 0.9925382
## 3   Quadrat.1 133 Extrapolation       0 10.007462  8.184492 11.83043 0.9926504
## 4   Quadrat.1 250 Extrapolation       0 10.413191  7.666941 13.15944 0.9987516
## 5   Quadrat.2 250   Rarefaction       0 13.704789 12.870477 14.53910 0.9961519
## 6   Quadrat.2 443   Rarefaction       0 14.000000 13.180666 14.81933 1.0000000
## 7   Quadrat.2 444      Observed       0 14.000000 13.179849 14.82015 1.0000000
## 8   Quadrat.2 445 Extrapolation       0 14.000000 13.178947 14.82105 1.0000000
## 9   Quadrat.3 250   Rarefaction       0 11.765789  9.758814 13.77276 0.9880285
## 10  Quadrat.3 445   Rarefaction       0 13.988789 10.757289 17.22029 0.9887892
## 11  Quadrat.3 446      Observed       0 14.000000 10.762698 17.23730 0.9888018
## 12  Quadrat.3 447 Extrapolation       0 14.011198 10.767925 17.25447 0.9888144
## 13  Quadrat.4 250   Rarefaction       0 11.529057  9.454556 13.60356 0.9887975
## 14  Quadrat.4 293   Rarefaction       0 11.989796  9.659415 14.32018 0.9897959
## 15  Quadrat.4 294      Observed       0 12.000000  9.663762 14.33624 0.9898191
## 16  Quadrat.4 295 Extrapolation       0 12.010181  9.667111 14.35325 0.9898422
## 17  Quadrat.5 250   Rarefaction       0 18.658257 15.885291 21.43122 0.9853869
## 18  Quadrat.5 276   Rarefaction       0 18.989170 16.007767 21.97057 0.9891697
## 19  Quadrat.5 277      Observed       0 19.000000 16.010473 21.98953 0.9892989
## 20  Quadrat.5 278 Extrapolation       0 19.010701 16.013050 22.00835 0.9894266
## 21  Quadrat.6 250   Rarefaction       0  8.304937  6.305286 10.30459 0.9901154
## 22  Quadrat.6 463   Rarefaction       0  9.993534  6.781668 13.20540 0.9935345
## 23  Quadrat.6 464      Observed       0 10.000000  6.783104 13.21690 0.9935438
## 24  Quadrat.6 465 Extrapolation       0 10.006456  6.784530 13.22838 0.9935531
## 25  Quadrat.7 250   Rarefaction       0 14.006600 11.727731 16.28547 0.9836745
## 26  Quadrat.7 327   Rarefaction       0 14.990854 12.368953 17.61275 0.9908537
## 27  Quadrat.7 328      Observed       0 15.000000 12.373415 17.62658 0.9909460
## 28  Quadrat.7 329 Extrapolation       0 15.009054 12.377773 17.64034 0.9910373
## 29  Quadrat.8 250   Rarefaction       0 13.154051 11.829992 14.47811 0.9921715
## 30  Quadrat.8 427   Rarefaction       0 13.997664 12.355067 15.64026 0.9976636
## 31  Quadrat.8 428      Observed       0 14.000000 12.355403 15.64460 0.9976852
## 32  Quadrat.8 429 Extrapolation       0 14.002315 12.355523 15.64911 0.9977067
## 33  Quadrat.9  81   Rarefaction       0 15.951220 12.858961 19.04348 0.9512195
## 34  Quadrat.9  82      Observed       0 16.000000 12.886890 19.11311 0.9526800
## 35  Quadrat.9  83 Extrapolation       0 16.047320 12.913314 19.18133 0.9540968
## 36  Quadrat.9 250 Extrapolation       0 17.570917 10.027617 25.11422 0.9997135
## 37 Quadrat.10 250      Observed       0 10.000000  7.963916 12.03608 0.9920320
## 38 Quadrat.11 154   Rarefaction       0 13.000000 11.995239 14.00476 1.0000000
## 39 Quadrat.11 155      Observed       0 13.000000 11.995134 14.00487 1.0000000
## 40 Quadrat.11 156 Extrapolation       0 13.000000 11.994406 14.00559 1.0000000
## 41 Quadrat.11 250 Extrapolation       0 13.000000 11.833585 14.16642 1.0000000
##       SC.LCL    SC.UCL
## 1  0.9770578 1.0000000
## 2  0.9759607 1.0000000
## 3  0.9761660 1.0000000
## 4  0.9897828 1.0000000
## 5  0.9932387 0.9990650
## 6  0.9967981 1.0000000
## 7  0.9968094 1.0000000
## 8  0.9968206 1.0000000
## 9  0.9806701 0.9953869
## 10 0.9822025 0.9953760
## 11 0.9820517 0.9955520
## 12 0.9820645 0.9955642
## 13 0.9813575 0.9962376
## 14 0.9821723 0.9974196
## 15 0.9810634 0.9985747
## 16 0.9810968 0.9985876
## 17 0.9728254 0.9979484
## 18 0.9762250 1.0000000
## 19 0.9763521 1.0000000
## 20 0.9764775 1.0000000
## 21 0.9829634 0.9972675
## 22 0.9873047 0.9997642
## 23 0.9873149 0.9997727
## 24 0.9873250 0.9997811
## 25 0.9754450 0.9919040
## 26 0.9816589 1.0000000
## 27 0.9817449 1.0000000
## 28 0.9818303 1.0000000
## 29 0.9882283 0.9961147
## 30 0.9935261 1.0000000
## 31 0.9932319 1.0000000
## 32 0.9932572 1.0000000
## 33 0.9113260 0.9911130
## 34 0.9125471 0.9928129
## 35 0.9137321 0.9944615
## 36 0.9708982 1.0000000
## 37 0.9826520 1.0000000
## 38 0.9914926 1.0000000
## 39 0.9916236 1.0000000
## 40 0.9917182 1.0000000
## 41 0.9964636 1.0000000
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$size_based to view complete output.
## 
## $coverage_based (LCL and UCL are obtained for fixed coverage; interval length is wider due to varying size in bootstraps.)
## 
##    Assemblage        SC   m        Method Order.q        qD    qD.LCL   qD.UCL
## 1   Quadrat.1 0.9924242 130   Rarefaction       0  9.986034  6.564050 13.40802
## 2   Quadrat.1 0.9925382 132      Observed       0 10.000000  6.567650 13.43235
## 3   Quadrat.1 0.9926504 133 Extrapolation       0 10.007462  6.563661 13.45126
## 4   Quadrat.1 0.9987516 250 Extrapolation       0 10.413191  6.315416 14.51097
## 5   Quadrat.2 0.9961519 250   Rarefaction       0 13.704789 12.651174 14.75840
## 6   Quadrat.2 1.0000000 444      Observed       0 14.000000 12.494781 15.50522
## 7   Quadrat.3 0.9880285 250   Rarefaction       0 11.765789  6.833775 16.69780
## 8   Quadrat.3 0.9887892 444   Rarefaction       0 13.977826  8.562163 19.39349
## 9   Quadrat.3 0.9888018 446      Observed       0 14.000000  8.574904 19.42510
## 10  Quadrat.3 0.9888144 447 Extrapolation       0 14.011198  8.577820 19.44458
## 11  Quadrat.4 0.9887975 250   Rarefaction       0 11.529057  7.562710 15.49540
## 12  Quadrat.4 0.9897959 292   Rarefaction       0 11.982627  7.787810 16.17744
## 13  Quadrat.4 0.9898191 294      Observed       0 12.000000  7.797874 16.20213
## 14  Quadrat.4 0.9898422 295 Extrapolation       0 12.010181  7.800957 16.21940
## 15  Quadrat.5 0.9853869 250   Rarefaction       0 18.658258 10.856816 26.45970
## 16  Quadrat.5 0.9891697 275   Rarefaction       0 18.983073  9.530717 28.43543
## 17  Quadrat.5 0.9892989 277      Observed       0 19.000000  9.489827 28.51017
## 18  Quadrat.5 0.9894266 278 Extrapolation       0 19.010701  9.443079 28.57832
## 19  Quadrat.6 0.9901154 250   Rarefaction       0  8.304937  3.292298 13.31758
## 20  Quadrat.6 0.9935345 462   Rarefaction       0  9.990245  3.909974 16.07052
## 21  Quadrat.6 0.9935438 464      Observed       0 10.000000  3.916568 16.08343
## 22  Quadrat.6 0.9935531 465 Extrapolation       0 10.006456  3.920617 16.09230
## 23  Quadrat.7 0.9836745 250   Rarefaction       0 14.006601 10.349911 17.66329
## 24  Quadrat.7 0.9908537 327   Rarefaction       0 14.988227  9.188215 20.78824
## 25  Quadrat.7 0.9909460 328      Observed       0 15.000000  9.164473 20.83553
## 26  Quadrat.7 0.9910373 329 Extrapolation       0 15.009054  9.137619 20.88049
## 27  Quadrat.8 0.9921715 250   Rarefaction       0 13.154051 11.016835 15.29127
## 28  Quadrat.8 0.9976636 427   Rarefaction       0 13.996602 10.595523 17.39768
## 29  Quadrat.8 0.9976852 428      Observed       0 14.000000 10.592374 17.40763
## 30  Quadrat.8 0.9977067 429 Extrapolation       0 14.002315 10.587908 17.41672
## 31  Quadrat.9 0.9512195  80   Rarefaction       0 15.914285  7.359687 24.46888
## 32  Quadrat.9 0.9526800  82      Observed       0 16.000000  7.277085 24.72292
## 33  Quadrat.9 0.9540968  83 Extrapolation       0 16.047320  7.155367 24.93927
## 34  Quadrat.9 0.9997135 250 Extrapolation       0 17.570917  2.741150 32.40068
## 35 Quadrat.10 0.9920320 250      Observed       0 10.000000  6.321051 13.67895
## 36 Quadrat.11 1.0000000 155      Observed       0 13.000000 11.511881 14.48812
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$coverage_based to view complete output.
## 
## $AsyEst: asymptotic diversity estimates along with related statistics.
##    Assemblage         Diversity  Observed Estimator      s.e.       LCL
## 1   Quadrat.1  Species richness 10.000000 10.496212 2.2973023 10.000000
## 2   Quadrat.1 Shannon diversity  4.909318  5.102191 0.5198756  4.083254
## 3   Quadrat.1 Simpson diversity  3.293762  3.352462 0.4270147  2.515529
## 4  Quadrat.10  Species richness 10.000000 11.992000 2.4650226 10.000000
## 5  Quadrat.10 Shannon diversity  4.373262  4.478543 0.2868992  3.916231
## 6  Quadrat.10 Simpson diversity  3.435954  3.469900 0.2017042  3.074567
## 7  Quadrat.11  Species richness 13.000000 13.000000 0.7461779 13.000000
## 8  Quadrat.11 Shannon diversity  8.680817  9.034744 0.5896706  7.879011
## 9  Quadrat.11 Simpson diversity  6.602088  6.851320 0.6807108  5.517152
## 10  Quadrat.2  Species richness 14.000000 14.000000 0.5389477 14.000000
## 11  Quadrat.2 Shannon diversity  9.824330  9.972034 0.2894474  9.404727
## 12  Quadrat.2 Simpson diversity  8.348268  8.489081 0.3422188  7.818344
## 13  Quadrat.3  Species richness 14.000000 23.977578 5.6626736 14.000000
## 14  Quadrat.3 Shannon diversity  5.827336  5.980165 0.2454475  5.499096
## 15  Quadrat.3 Simpson diversity  4.475856  4.511092 0.1763882  4.165377
## 16  Quadrat.4  Species richness 12.000000 16.484694 4.7919557 12.000000
## 17  Quadrat.4 Shannon diversity  6.330739  6.508285 0.3071753  5.906232
## 18  Quadrat.4 Simpson diversity  4.762839  4.824801 0.3448295  4.148948
## 19  Quadrat.5  Species richness 19.000000 19.896751 4.9986391 19.000000
## 20  Quadrat.5 Shannon diversity  5.076505  5.269242 0.4423722  4.402208
## 21  Quadrat.5 Simpson diversity  2.755773  2.773417 0.2430334  2.297080
## 22  Quadrat.6  Species richness 10.000000 14.490302 4.3767418 10.000000
## 23  Quadrat.6 Shannon diversity  4.290540  4.357068 0.1624795  4.038614
## 24  Quadrat.6 Simpson diversity  3.687712  3.709244 0.1311020  3.452289
## 25  Quadrat.7  Species richness 15.000000 15.897256 3.9527346 15.000000
## 26  Quadrat.7 Shannon diversity  6.415378  6.577376 0.3651740  5.861648
## 27  Quadrat.7 Simpson diversity  4.795151  4.851456 0.3052201  4.253236
## 28  Quadrat.8  Species richness 14.000000 14.249416 1.7573640 14.000000
## 29  Quadrat.8 Shannon diversity  6.244415  6.346618 0.2988757  5.760832
## 30  Quadrat.8 Simpson diversity  4.350337  4.384741 0.2182457  3.956987
## 31  Quadrat.9  Species richness 16.000000 17.580488 5.9614548 16.000000
## 32  Quadrat.9 Shannon diversity  8.450869  9.469144 1.3443674  6.834233
## 33  Quadrat.9 Simpson diversity  5.475570  5.795812 1.0241384  3.788537
##          UCL
## 1  14.998842
## 2   6.121128
## 3   4.189396
## 4  16.823356
## 5   5.040855
## 6   3.865233
## 7  14.462482
## 8  10.190477
## 9   8.185489
## 10 15.056318
## 11 10.539340
## 12  9.159817
## 13 35.076215
## 14  6.461233
## 15  4.856806
## 16 25.876755
## 17  7.110337
## 18  5.500655
## 19 29.693904
## 20  6.136275
## 21  3.249753
## 22 23.068558
## 23  4.675522
## 24  3.966199
## 25 23.644474
## 26  7.293104
## 27  5.449677
## 28 17.693786
## 29  6.932403
## 30  4.812495
## 31 29.264725
## 32 12.104056
## 33  7.803086
w <- c(155)

Barrow_Dataw <- iNEXT(Barrow_Nos, q=c(0), datatype= "abundance", size = w)

Barrow_Dataw
## Compare 11 assemblages with Hill number order q = 0.
## $class: iNEXT
## 
## $DataInfo: basic data information
##    Assemblage   n S.obs     SC f1 f2 f3 f4 f5 f6 f7 f8 f9 f10
## 1   Quadrat.1 132    10 0.9925  1  1  1  3  0  0  0  1  0   0
## 2   Quadrat.2 444    14 1.0000  0  1  1  0  1  1  0  0  0   0
## 3   Quadrat.3 446    14 0.9888  5  0  0  1  0  0  0  0  0   1
## 4   Quadrat.4 294    12 0.9898  3  1  0  0  0  0  0  1  1   0
## 5   Quadrat.5 277    19 0.9893  3  5  4  1  0  1  0  1  0   0
## 6   Quadrat.6 464    10 0.9935  3  1  1  0  0  0  0  1  0   0
## 7   Quadrat.7 328    15 0.9909  3  5  0  0  0  0  0  0  0   2
## 8   Quadrat.8 428    14 0.9977  1  2  1  0  1  0  1  0  0   0
## 9   Quadrat.9  82    16 0.9527  4  5  2  1  1  1  0  0  0   0
## 10 Quadrat.10 250    10 0.9920  2  1  0  0  3  0  0  0  0   1
## 11 Quadrat.11 155    13 1.0000  0  1  1  3  1  2  0  0  0   0
## 
## $iNextEst: diversity estimates with rarefied and extrapolated samples.
## $size_based (LCL and UCL are obtained for fixed size.)
## 
##    Assemblage   m        Method Order.q        qD    qD.LCL    qD.UCL        SC
## 1   Quadrat.1 131   Rarefaction       0  9.992424  8.695526 11.289323 0.9924242
## 2   Quadrat.1 132      Observed       0 10.000000  8.696294 11.303706 0.9925382
## 3   Quadrat.1 133 Extrapolation       0 10.007462  8.695654 11.319270 0.9926504
## 4   Quadrat.1 155 Extrapolation       0 10.146009  8.643606 11.648413 0.9947338
## 5   Quadrat.2 155   Rarefaction       0 13.106420 12.458401 13.754438 0.9904352
## 6   Quadrat.2 443   Rarefaction       0 14.000000 13.240213 14.759787 1.0000000
## 7   Quadrat.2 444      Observed       0 14.000000 13.239362 14.760638 1.0000000
## 8   Quadrat.2 445 Extrapolation       0 14.000000 13.238943 14.761057 1.0000000
## 9   Quadrat.3 155   Rarefaction       0 10.541638  9.106706 11.976571 0.9857132
## 10  Quadrat.3 445   Rarefaction       0 13.988789 10.639355 17.338223 0.9887892
## 11  Quadrat.3 446      Observed       0 14.000000 10.644498 17.355502 0.9888018
## 12  Quadrat.3 447 Extrapolation       0 14.011198 10.649392 17.373004 0.9888144
## 13  Quadrat.4 155   Rarefaction       0 10.355688  8.584070 12.127307 0.9863965
## 14  Quadrat.4 293   Rarefaction       0 11.989796  9.259418 14.720174 0.9897959
## 15  Quadrat.4 294      Observed       0 12.000000  9.263489 14.736511 0.9898191
## 16  Quadrat.4 295 Extrapolation       0 12.010181  9.266866 14.753496 0.9898422
## 17  Quadrat.5 155   Rarefaction       0 16.331555 14.299797 18.363312 0.9634357
## 18  Quadrat.5 276   Rarefaction       0 18.989170 16.563589 21.414750 0.9891697
## 19  Quadrat.5 277      Observed       0 19.000000 16.570651 21.429349 0.9892989
## 20  Quadrat.5 278 Extrapolation       0 19.010701 16.577213 21.444190 0.9894266
## 21  Quadrat.6 155   Rarefaction       0  7.227255  5.871147  8.583364 0.9868378
## 22  Quadrat.6 463   Rarefaction       0  9.993534  7.055190 12.931879 0.9935345
## 23  Quadrat.6 464      Observed       0 10.000000  7.056989 12.943011 0.9935438
## 24  Quadrat.6 465 Extrapolation       0 10.006456  7.058635 12.954278 0.9935531
## 25  Quadrat.7 155   Rarefaction       0 12.027598 10.282365 13.772831 0.9746475
## 26  Quadrat.7 327   Rarefaction       0 14.990854 12.454161 17.527546 0.9908537
## 27  Quadrat.7 328      Observed       0 15.000000 12.459596 17.540404 0.9909460
## 28  Quadrat.7 329 Extrapolation       0 15.009054 12.464940 17.553168 0.9910373
## 29  Quadrat.8 155   Rarefaction       0 12.140675 11.126374 13.154975 0.9856570
## 30  Quadrat.8 427   Rarefaction       0 13.997664 12.474622 15.520705 0.9976636
## 31  Quadrat.8 428      Observed       0 14.000000 12.474606 15.525394 0.9976852
## 32  Quadrat.8 429 Extrapolation       0 14.002315 12.474345 15.530284 0.9977067
## 33  Quadrat.9  81   Rarefaction       0 15.951220 13.437313 18.465126 0.9512195
## 34  Quadrat.9  82      Observed       0 16.000000 13.476626 18.523374 0.9526800
## 35  Quadrat.9  83 Extrapolation       0 16.047320 13.514516 18.580124 0.9540968
## 36  Quadrat.9 155 Extrapolation       0 17.408663 13.980185 20.837142 0.9948556
## 37 Quadrat.10 155   Rarefaction       0  9.074264  7.506763 10.641764 0.9878047
## 38 Quadrat.10 249   Rarefaction       0  9.992000  8.012531 11.971469 0.9920000
## 39 Quadrat.10 250      Observed       0 10.000000  8.016577 11.983423 0.9920320
## 40 Quadrat.10 251 Extrapolation       0 10.007968  8.019910 11.996026 0.9920639
## 41 Quadrat.11 155      Observed       0 13.000000 12.026842 13.973158 1.0000000
##       SC.LCL    SC.UCL
## 1  0.9779629 1.0000000
## 2  0.9770094 1.0000000
## 3  0.9772245 1.0000000
## 4  0.9812761 1.0000000
## 5  0.9872402 0.9936303
## 6  0.9976003 1.0000000
## 7  0.9980155 1.0000000
## 8  0.9980251 1.0000000
## 9  0.9774012 0.9940252
## 10 0.9814917 0.9960868
## 11 0.9812198 0.9963838
## 12 0.9812360 0.9963928
## 13 0.9773546 0.9954383
## 14 0.9814661 0.9981257
## 15 0.9808782 0.9987600
## 16 0.9809106 0.9987738
## 17 0.9535134 0.9733579
## 18 0.9796777 0.9986616
## 19 0.9794939 0.9991040
## 20 0.9796167 0.9992365
## 21 0.9798301 0.9938455
## 22 0.9879099 0.9991591
## 23 0.9877825 0.9993050
## 24 0.9877940 0.9993121
## 25 0.9666424 0.9826526
## 26 0.9838809 0.9978264
## 27 0.9839747 0.9979172
## 28 0.9840676 0.9980071
## 29 0.9809112 0.9904029
## 30 0.9927150 1.0000000
## 31 0.9925519 1.0000000
## 32 0.9925820 1.0000000
## 33 0.9222419 0.9801971
## 34 0.9235046 0.9818554
## 35 0.9247401 0.9834534
## 36 0.9700469 1.0000000
## 37 0.9800279 0.9955815
## 38 0.9843644 0.9996356
## 39 0.9838338 1.0000000
## 40 0.9838972 1.0000000
## 41 0.9916229 1.0000000
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$size_based to view complete output.
## 
## $coverage_based (LCL and UCL are obtained for fixed coverage; interval length is wider due to varying size in bootstraps.)
## 
##    Assemblage        SC   m        Method Order.q        qD    qD.LCL   qD.UCL
## 1   Quadrat.1 0.9924242 130   Rarefaction       0  9.986034  7.064949 12.90712
## 2   Quadrat.1 0.9925382 132      Observed       0 10.000000  7.069014 12.93099
## 3   Quadrat.1 0.9926504 133 Extrapolation       0 10.007462  7.066843 12.94808
## 4   Quadrat.1 0.9947338 155 Extrapolation       0 10.146009  7.007678 13.28434
## 5   Quadrat.2 0.9904352 155   Rarefaction       0 13.106420 12.404361 13.80848
## 6   Quadrat.2 1.0000000 444      Observed       0 14.000000 13.053105 14.94690
## 7   Quadrat.3 0.9857132 155   Rarefaction       0 10.541638  6.494726 14.58855
## 8   Quadrat.3 0.9887892 444   Rarefaction       0 13.977826  8.269653 19.68600
## 9   Quadrat.3 0.9888018 446      Observed       0 14.000000  8.281113 19.71889
## 10  Quadrat.3 0.9888144 447 Extrapolation       0 14.011198  8.284662 19.73773
## 11  Quadrat.4 0.9863965 155   Rarefaction       0 10.355688  5.482831 15.22855
## 12  Quadrat.4 0.9897959 292   Rarefaction       0 11.982627  6.294369 17.67088
## 13  Quadrat.4 0.9898191 294      Observed       0 12.000000  6.305573 17.69443
## 14  Quadrat.4 0.9898422 295 Extrapolation       0 12.010181  6.314028 17.70633
## 15  Quadrat.5 0.9634357 155   Rarefaction       0 16.331556 13.817995 18.84512
## 16  Quadrat.5 0.9891697 275   Rarefaction       0 18.983073 14.434789 23.53136
## 17  Quadrat.5 0.9892989 277      Observed       0 19.000000 14.422996 23.57700
## 18  Quadrat.5 0.9894266 278 Extrapolation       0 19.010701 14.404024 23.61738
## 19  Quadrat.6 0.9868378 155   Rarefaction       0  7.227255  4.221262 10.23325
## 20  Quadrat.6 0.9935345 462   Rarefaction       0  9.990245  4.120163 15.86033
## 21  Quadrat.6 0.9935438 464      Observed       0 10.000000  4.125824 15.87418
## 22  Quadrat.6 0.9935531 465 Extrapolation       0 10.006456  4.128596 15.88432
## 23  Quadrat.7 0.9746475 155   Rarefaction       0 12.027598  9.528768 14.52643
## 24  Quadrat.7 0.9908537 327   Rarefaction       0 14.988227 10.440059 19.53640
## 25  Quadrat.7 0.9909460 328      Observed       0 15.000000 10.435116 19.56488
## 26  Quadrat.7 0.9910373 329 Extrapolation       0 15.009054 10.427323 19.59078
## 27  Quadrat.8 0.9856570 155   Rarefaction       0 12.140675 10.746101 13.53525
## 28  Quadrat.8 0.9976636 427   Rarefaction       0 13.996602 11.067266 16.92594
## 29  Quadrat.8 0.9976852 428      Observed       0 14.000000 11.064252 16.93575
## 30  Quadrat.8 0.9977067 429 Extrapolation       0 14.002315 11.060211 16.94442
## 31  Quadrat.9 0.9512195  80   Rarefaction       0 15.914285 12.299945 19.52862
## 32  Quadrat.9 0.9526800  82      Observed       0 16.000000 12.336471 19.66353
## 33  Quadrat.9 0.9540968  83 Extrapolation       0 16.047320 12.329791 19.76485
## 34  Quadrat.9 0.9948556 155 Extrapolation       0 17.408663 11.286735 23.53059
## 35 Quadrat.10 0.9878047 155   Rarefaction       0  9.074264  6.830563 11.31796
## 36 Quadrat.10 0.9920000 248   Rarefaction       0  9.984021  7.313180 12.65486
## 37 Quadrat.10 0.9920320 250      Observed       0 10.000000  7.325065 12.67493
## 38 Quadrat.10 0.9920639 251 Extrapolation       0 10.007968  7.329724 12.68621
## 39 Quadrat.11 1.0000000 155      Observed       0 13.000000 11.598378 14.40162
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$coverage_based to view complete output.
## 
## $AsyEst: asymptotic diversity estimates along with related statistics.
##    Assemblage         Diversity  Observed Estimator      s.e.       LCL
## 1   Quadrat.1  Species richness 10.000000 10.496212 2.2561562 10.000000
## 2   Quadrat.1 Shannon diversity  4.909318  5.102191 0.4640066  4.192755
## 3   Quadrat.1 Simpson diversity  3.293762  3.352462 0.3862962  2.595336
## 4  Quadrat.10  Species richness 10.000000 11.992000 2.7950325 10.000000
## 5  Quadrat.10 Shannon diversity  4.373262  4.478543 0.2613053  3.966394
## 6  Quadrat.10 Simpson diversity  3.435954  3.469900 0.1620526  3.152282
## 7  Quadrat.11  Species richness 13.000000 13.000000 0.7836735 13.000000
## 8  Quadrat.11 Shannon diversity  8.680817  9.034744 0.5357821  7.984630
## 9  Quadrat.11 Simpson diversity  6.602088  6.851320 0.6021744  5.671080
## 10  Quadrat.2  Species richness 14.000000 14.000000 0.5760499 14.000000
## 11  Quadrat.2 Shannon diversity  9.824330  9.972034 0.3362341  9.313027
## 12  Quadrat.2 Simpson diversity  8.348268  8.489081 0.4105082  7.684499
## 13  Quadrat.3  Species richness 14.000000 23.977578 6.8416410 14.000000
## 14  Quadrat.3 Shannon diversity  5.827336  5.980165 0.3066422  5.379157
## 15  Quadrat.3 Simpson diversity  4.475856  4.511092 0.2128449  4.093924
## 16  Quadrat.4  Species richness 12.000000 16.484694 4.0185781 12.000000
## 17  Quadrat.4 Shannon diversity  6.330739  6.508285 0.3544242  5.813626
## 18  Quadrat.4 Simpson diversity  4.762839  4.824801 0.3277835  4.182357
## 19  Quadrat.5  Species richness 19.000000 19.896751 4.3048179 19.000000
## 20  Quadrat.5 Shannon diversity  5.076505  5.269242 0.4450238  4.397011
## 21  Quadrat.5 Simpson diversity  2.755773  2.773417 0.2278280  2.326882
## 22  Quadrat.6  Species richness 10.000000 14.490302 4.8429959 10.000000
## 23  Quadrat.6 Shannon diversity  4.290540  4.357068 0.1438021  4.075221
## 24  Quadrat.6 Simpson diversity  3.687712  3.709244 0.1228808  3.468402
## 25  Quadrat.7  Species richness 15.000000 15.897256 4.5015268 15.000000
## 26  Quadrat.7 Shannon diversity  6.415378  6.577376 0.3048819  5.979819
## 27  Quadrat.7 Simpson diversity  4.795151  4.851456 0.2783197  4.305960
## 28  Quadrat.8  Species richness 14.000000 14.249416 2.2850085 14.000000
## 29  Quadrat.8 Shannon diversity  6.244415  6.346618 0.3135531  5.732065
## 30  Quadrat.8 Simpson diversity  4.350337  4.384741 0.2364864  3.921236
## 31  Quadrat.9  Species richness 16.000000 17.580488 7.2358566 16.000000
## 32  Quadrat.9 Shannon diversity  8.450869  9.469144 1.0672787  7.377317
## 33  Quadrat.9 Simpson diversity  5.475570  5.795812 0.7924440  4.242650
##          UCL
## 1  14.918197
## 2   6.011627
## 3   4.109589
## 4  17.470163
## 5   4.990692
## 6   3.787517
## 7  14.535972
## 8  10.084857
## 9   8.031560
## 10 15.129037
## 11 10.631040
## 12  9.293662
## 13 37.386948
## 14  6.581172
## 15  4.928260
## 16 24.360962
## 17  7.202943
## 18  5.467245
## 19 28.334039
## 20  6.141472
## 21  3.219951
## 22 23.982399
## 23  4.638915
## 24  3.950086
## 25 24.720087
## 26  7.174934
## 27  5.396953
## 28 18.727950
## 29  6.961170
## 30  4.848246
## 31 31.762506
## 32 11.560972
## 33  7.348973

#Now to run the analysis again without specificying the size, can do this for #looking at the other diversity indices#

Barrow_Data <- iNEXT(Barrow_Nos, q=c(0), datatype= "abundance")

Barrow_Data
## Compare 11 assemblages with Hill number order q = 0.
## $class: iNEXT
## 
## $DataInfo: basic data information
##    Assemblage   n S.obs     SC f1 f2 f3 f4 f5 f6 f7 f8 f9 f10
## 1   Quadrat.1 132    10 0.9925  1  1  1  3  0  0  0  1  0   0
## 2   Quadrat.2 444    14 1.0000  0  1  1  0  1  1  0  0  0   0
## 3   Quadrat.3 446    14 0.9888  5  0  0  1  0  0  0  0  0   1
## 4   Quadrat.4 294    12 0.9898  3  1  0  0  0  0  0  1  1   0
## 5   Quadrat.5 277    19 0.9893  3  5  4  1  0  1  0  1  0   0
## 6   Quadrat.6 464    10 0.9935  3  1  1  0  0  0  0  1  0   0
## 7   Quadrat.7 328    15 0.9909  3  5  0  0  0  0  0  0  0   2
## 8   Quadrat.8 428    14 0.9977  1  2  1  0  1  0  1  0  0   0
## 9   Quadrat.9  82    16 0.9527  4  5  2  1  1  1  0  0  0   0
## 10 Quadrat.10 250    10 0.9920  2  1  0  0  3  0  0  0  0   1
## 11 Quadrat.11 155    13 1.0000  0  1  1  3  1  2  0  0  0   0
## 
## $iNextEst: diversity estimates with rarefied and extrapolated samples.
## $size_based (LCL and UCL are obtained for fixed size.)
## 
##     Assemblage   m        Method Order.q        qD    qD.LCL    qD.UCL
## 1    Quadrat.1   1   Rarefaction       0  1.000000  1.000000  1.000000
## 10   Quadrat.1  66   Rarefaction       0  8.947705  7.656016 10.239394
## 20   Quadrat.1 132      Observed       0 10.000000  8.166515 11.833485
## 30   Quadrat.1 195 Extrapolation       0 10.305180  7.903144 12.707217
## 40   Quadrat.1 264 Extrapolation       0 10.429060  7.513656 13.344463
## 41   Quadrat.2   1   Rarefaction       0  1.000000  1.000000  1.000000
## 50   Quadrat.2 222   Rarefaction       0 13.580553 12.839038 14.322069
## 60   Quadrat.2 444      Observed       0 14.000000 13.179849 14.820151
## 70   Quadrat.2 654 Extrapolation       0 14.000000 13.071452 14.928548
## 80   Quadrat.2 888 Extrapolation       0 14.000000 13.013573 14.986427
## 81   Quadrat.3   1   Rarefaction       0  1.000000  1.000000  1.000000
## 90   Quadrat.3 223   Rarefaction       0 11.437408  9.519248 13.355568
## 100  Quadrat.3 446      Observed       0 14.000000 10.901025 17.098975
## 110  Quadrat.3 657 Extrapolation       0 16.104927 11.936731 20.273124
## 120  Quadrat.3 892 Extrapolation       0 17.930966 12.598141 23.263792
## 121  Quadrat.4   1   Rarefaction       0  1.000000  1.000000  1.000000
## 130  Quadrat.4 147   Rarefaction       0 10.245584  8.527400 11.963769
## 140  Quadrat.4 294      Observed       0 12.000000  9.123811 14.876189
## 150  Quadrat.4 433 Extrapolation       0 13.214789  9.233928 17.195649
## 160  Quadrat.4 588 Extrapolation       0 14.185662  9.116923 19.254401
## 161  Quadrat.5   1   Rarefaction       0  1.000000  1.000000  1.000000
## 170  Quadrat.5 138   Rarefaction       0 15.659111 13.495305 17.822916
## 180  Quadrat.5 277      Observed       0 19.000000 16.149823 21.850177
## 190  Quadrat.5 408 Extrapolation       0 19.710680 16.032181 23.389178
## 200  Quadrat.5 554 Extrapolation       0 19.864504 15.213994 24.515015
## 201  Quadrat.6   1   Rarefaction       0  1.000000  1.000000  1.000000
## 210  Quadrat.6 232   Rarefaction       0  8.122676  6.201739 10.043614
## 220  Quadrat.6 464      Observed       0 10.000000  6.975019 13.024981
## 230  Quadrat.6 684 Extrapolation       0 11.218394  7.206702 15.230086
## 240  Quadrat.6 928 Extrapolation       0 12.187115  7.191028 17.183201
## 241  Quadrat.7   1   Rarefaction       0  1.000000  1.000000  1.000000
## 250  Quadrat.7 164   Rarefaction       0 12.252127 10.728355 13.775899
## 260  Quadrat.7 328      Observed       0 15.000000 12.768457 17.231543
## 270  Quadrat.7 483 Extrapolation       0 15.710963 12.651768 18.770159
## 280  Quadrat.7 656 Extrapolation       0 15.865031 11.852503 19.877560
## 281  Quadrat.8   1   Rarefaction       0  1.000000  1.000000  1.000000
## 290  Quadrat.8 214   Rarefaction       0 12.838973 11.614452 14.063493
## 300  Quadrat.8 428      Observed       0 14.000000 12.320031 15.679969
## 310  Quadrat.8 631 Extrapolation       0 14.211841 11.924231 16.499451
## 320  Quadrat.8 856 Extrapolation       0 14.244805 11.318865 17.170745
## 321  Quadrat.9   1   Rarefaction       0  1.000000  1.000000  1.000000
## 330  Quadrat.9  41   Rarefaction       0 12.426486 10.277345 14.575626
## 340  Quadrat.9  82      Observed       0 16.000000 13.106148 18.893852
## 350  Quadrat.9 121 Extrapolation       0 17.097502 13.379878 20.815126
## 360  Quadrat.9 164 Extrapolation       0 17.449789 12.861350 22.038228
## 361 Quadrat.10   1   Rarefaction       0  1.000000  1.000000  1.000000
## 370 Quadrat.10 125   Rarefaction       0  8.660186  7.639906  9.680466
## 380 Quadrat.10 250      Observed       0 10.000000  8.269913 11.730087
## 390 Quadrat.10 368 Extrapolation       0 10.750659  8.285304 13.216013
## 400 Quadrat.10 500 Extrapolation       0 11.260652  8.190726 14.330579
## 401 Quadrat.11   1   Rarefaction       0  1.000000  1.000000  1.000000
## 410 Quadrat.11  77   Rarefaction       0 12.378716 11.533344 13.224088
## 420 Quadrat.11 155      Observed       0 13.000000 12.154434 13.845566
## 430 Quadrat.11 228 Extrapolation       0 13.000000 11.913419 14.086581
## 440 Quadrat.11 310 Extrapolation       0 13.000000 11.712202 14.287798
##            SC    SC.LCL    SC.UCL
## 1   0.2982882 0.2327390 0.3638375
## 10  0.9681311 0.9517969 0.9844652
## 20  0.9925382 0.9760952 1.0000000
## 30  0.9971273 0.9856450 1.0000000
## 40  0.9989902 0.9911339 1.0000000
## 41  0.1177984 0.1084460 0.1271508
## 50  0.9949676 0.9919067 0.9980284
## 60  1.0000000 0.9979085 1.0000000
## 70  1.0000000 0.9992532 1.0000000
## 80  1.0000000 0.9997411 1.0000000
## 81  0.2216758 0.1971644 0.2461872
## 90  0.9876404 0.9806405 0.9946402
## 100 0.9888018 0.9822644 0.9953392
## 110 0.9911643 0.9848924 0.9974361
## 120 0.9932137 0.9877432 0.9986842
## 121 0.2072624 0.1783220 0.2362028
## 130 0.9861074 0.9763933 0.9958216
## 140 0.9898191 0.9794623 1.0000000
## 150 0.9925768 0.9836802 1.0000000
## 160 0.9947809 0.9874565 1.0000000
## 161 0.3605661 0.2905734 0.4305588
## 170 0.9576645 0.9466981 0.9686309
## 180 0.9892989 0.9780918 1.0000000
## 190 0.9977796 0.9872041 1.0000000
## 200 0.9996152 0.9911036 1.0000000
## 201 0.2695967 0.2502231 0.2889704
## 210 0.9896514 0.9832642 0.9960386
## 220 0.9935438 0.9876695 0.9994181
## 230 0.9952956 0.9900954 1.0000000
## 240 0.9966884 0.9924148 1.0000000
## 241 0.2061237 0.1789891 0.2332583
## 250 0.9755530 0.9678620 0.9832439
## 260 0.9909460 0.9825606 0.9993314
## 270 0.9981202 0.9902620 1.0000000
## 280 0.9996748 0.9930703 1.0000000
## 281 0.2280636 0.2026137 0.2535136
## 290 0.9902972 0.9861617 0.9944326
## 300 0.9976852 0.9925157 1.0000000
## 310 0.9996513 0.9956443 1.0000000
## 320 0.9999572 0.9970805 1.0000000
## 321 0.1725384 0.1079280 0.2371488
## 330 0.8625042 0.8273320 0.8976764
## 340 0.9526800 0.9184619 0.9868981
## 350 0.9855393 0.9540274 1.0000000
## 360 0.9960869 0.9711345 1.0000000
## 361 0.2881928 0.2611913 0.3151943
## 370 0.9843510 0.9755099 0.9931920
## 380 0.9920320 0.9830970 1.0000000
## 390 0.9950346 0.9885216 1.0000000
## 400 0.9970746 0.9925076 1.0000000
## 401 0.1459573 0.1119581 0.1799564
## 410 0.9750464 0.9653581 0.9847348
## 420 1.0000000 0.9904775 1.0000000
## 430 1.0000000 0.9951756 1.0000000
## 440 1.0000000 0.9974217 1.0000000
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$size_based to view complete output.
## 
## $coverage_based (LCL and UCL are obtained for fixed coverage; interval length is wider due to varying size in bootstraps.)
## 
##     Assemblage        SC   m        Method Order.q        qD     qD.LCL
## 1    Quadrat.1 0.2982883   1   Rarefaction       0  1.000000  0.8922561
## 10   Quadrat.1 0.9681311  66   Rarefaction       0  8.947706  7.1080639
## 20   Quadrat.1 0.9925382 132      Observed       0 10.000000  6.5501053
## 30   Quadrat.1 0.9971273 195 Extrapolation       0 10.305180  6.4404560
## 40   Quadrat.1 0.9989902 264 Extrapolation       0 10.429060  6.3841169
## 41   Quadrat.2 0.1177984   1   Rarefaction       0  1.000000  0.9625929
## 45   Quadrat.2 0.9824284  99   Rarefaction       0 12.373961 11.5415635
## 50   Quadrat.2 0.9949676 222   Rarefaction       0 13.580553 12.7610713
## 55   Quadrat.2 0.9986248 344   Rarefaction       0 13.937856 13.0093869
## 59   Quadrat.2 1.0000000 444      Observed       0 14.000000 12.9804069
## 60   Quadrat.3 0.2216778   1   Rarefaction       0  1.000008  0.9428810
## 69   Quadrat.3 0.9876404 223   Rarefaction       0 11.437408  7.0378219
## 79   Quadrat.3 0.9888018 446      Observed       0 14.000000  8.7361818
## 89   Quadrat.3 0.9911643 657 Extrapolation       0 16.104927  9.5384569
## 99   Quadrat.3 0.9932137 892 Extrapolation       0 17.930966 10.2394980
## 100  Quadrat.4 0.2072643   1   Rarefaction       0  1.000009  0.9135270
## 109  Quadrat.4 0.9861074 147   Rarefaction       0 10.245584  4.7534404
## 119  Quadrat.4 0.9898191 294      Observed       0 12.000000  5.2801712
## 129  Quadrat.4 0.9925768 433 Extrapolation       0 13.214789  5.5912769
## 139  Quadrat.4 0.9947809 588 Extrapolation       0 14.185662  5.8816955
## 140  Quadrat.5 0.3605678   1   Rarefaction       0  1.000005  0.8915794
## 149  Quadrat.5 0.9576645 138   Rarefaction       0 15.659111 12.6468209
## 159  Quadrat.5 0.9892989 277      Observed       0 19.000000 13.0498163
## 169  Quadrat.5 0.9977796 408 Extrapolation       0 19.710680 11.0427098
## 179  Quadrat.5 0.9996152 554 Extrapolation       0 19.864504 10.5548045
## 180  Quadrat.6 0.2695998   1   Rarefaction       0  1.000010  0.9658912
## 189  Quadrat.6 0.9896514 232   Rarefaction       0  8.122676  3.4079486
## 199  Quadrat.6 0.9935438 464      Observed       0 10.000000  3.7867528
## 209  Quadrat.6 0.9952956 684 Extrapolation       0 11.218394  4.2013529
## 219  Quadrat.6 0.9966884 928 Extrapolation       0 12.187115  4.5393565
## 220  Quadrat.7 0.2061237   1   Rarefaction       0  1.000000  0.9265955
## 229  Quadrat.7 0.9755530 164   Rarefaction       0 12.252126 10.0027063
## 239  Quadrat.7 0.9909460 328      Observed       0 15.000000  9.7135338
## 249  Quadrat.7 0.9981202 483 Extrapolation       0 15.710963  7.9366508
## 259  Quadrat.7 0.9996748 656 Extrapolation       0 15.865031  7.5000236
## 260  Quadrat.8 0.2280665   1   Rarefaction       0  1.000012  0.9243263
## 269  Quadrat.8 0.9902972 214   Rarefaction       0 12.838973 11.0924382
## 279  Quadrat.8 0.9976852 428      Observed       0 14.000000 10.2705590
## 289  Quadrat.8 0.9996513 631 Extrapolation       0 14.211841  9.7615478
## 299  Quadrat.8 0.9999572 856 Extrapolation       0 14.244805  9.6763416
## 300  Quadrat.9 0.1725400   1   Rarefaction       0  1.000009  0.7943619
## 309  Quadrat.9 0.8625042  41   Rarefaction       0 12.426484  9.3668616
## 319  Quadrat.9 0.9526800  82      Observed       0 16.000000 11.3457857
## 329  Quadrat.9 0.9855393 121 Extrapolation       0 17.097502 10.0410621
## 339  Quadrat.9 0.9960869 164 Extrapolation       0 17.449789  9.4913951
## 340 Quadrat.10 0.2881978   1   Rarefaction       0  1.000015  0.9498723
## 349 Quadrat.10 0.9843510 125   Rarefaction       0  8.660186  6.6944024
## 359 Quadrat.10 0.9920320 250      Observed       0 10.000000  6.8814495
## 369 Quadrat.10 0.9950346 368 Extrapolation       0 10.750659  7.1539985
## 379 Quadrat.10 0.9970746 500 Extrapolation       0 11.260652  7.3562137
## 380 Quadrat.11 0.1459599   1   Rarefaction       0  1.000017  0.9125645
## 384 Quadrat.11 0.9059712  35   Rarefaction       0 10.147477  9.0645129
## 389 Quadrat.11 0.9750465  77   Rarefaction       0 12.378716 11.5826806
## 394 Quadrat.11 0.9953552 120   Rarefaction       0 12.931952 11.6822208
## 398 Quadrat.11 1.0000000 155      Observed       0 13.000000 11.4298870
##        qD.UCL
## 1    1.107744
## 10  10.787348
## 20  13.449895
## 30  14.169905
## 40  14.474002
## 41   1.037407
## 45  13.206359
## 50  14.400036
## 55  14.866326
## 59  15.019593
## 60   1.057136
## 69  15.836994
## 79  19.263818
## 89  22.671398
## 99  25.622435
## 100  1.086490
## 109 15.737728
## 119 18.719829
## 129 20.838300
## 139 22.489628
## 140  1.108430
## 149 18.671400
## 159 24.950184
## 169 28.378649
## 179 29.174204
## 180  1.034129
## 189 12.837403
## 199 16.213247
## 209 18.235436
## 219 19.834873
## 220  1.073404
## 229 14.501547
## 239 20.286466
## 249 23.485276
## 259 24.230039
## 260  1.075697
## 269 14.585507
## 279 17.729441
## 289 18.662134
## 299 18.813268
## 300  1.205656
## 309 15.486107
## 319 20.654214
## 329 24.153942
## 339 25.408183
## 340  1.050159
## 349 10.625970
## 359 13.118550
## 369 14.347319
## 379 15.165091
## 380  1.087470
## 384 11.230441
## 389 13.174752
## 394 14.181683
## 398 14.570113
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$coverage_based to view complete output.
## 
## $AsyEst: asymptotic diversity estimates along with related statistics.
##    Assemblage         Diversity  Observed Estimator      s.e.       LCL
## 1   Quadrat.1  Species richness 10.000000 10.496212 2.3850907 10.000000
## 2   Quadrat.1 Shannon diversity  4.909318  5.102191 0.4292502  4.260876
## 3   Quadrat.1 Simpson diversity  3.293762  3.352462 0.3481884  2.670025
## 4  Quadrat.10  Species richness 10.000000 11.992000 2.5974803 10.000000
## 5  Quadrat.10 Shannon diversity  4.373262  4.478543 0.2856456  3.918688
## 6  Quadrat.10 Simpson diversity  3.435954  3.469900 0.1879033  3.101616
## 7  Quadrat.11  Species richness 13.000000 13.000000 0.7504134 13.000000
## 8  Quadrat.11 Shannon diversity  8.680817  9.034744 0.6018994  7.855043
## 9  Quadrat.11 Simpson diversity  6.602088  6.851320 0.6847334  5.509268
## 10  Quadrat.2  Species richness 14.000000 14.000000 0.5529829 14.000000
## 11  Quadrat.2 Shannon diversity  9.824330  9.972034 0.3016387  9.380833
## 12  Quadrat.2 Simpson diversity  8.348268  8.489081 0.3600348  7.783425
## 13  Quadrat.3  Species richness 14.000000 23.977578 6.1678866 14.000000
## 14  Quadrat.3 Shannon diversity  5.827336  5.980165 0.2610931  5.468432
## 15  Quadrat.3 Simpson diversity  4.475856  4.511092 0.1810451  4.156250
## 16  Quadrat.4  Species richness 12.000000 16.484694 4.7704787 12.000000
## 17  Quadrat.4 Shannon diversity  6.330739  6.508285 0.3934683  5.737101
## 18  Quadrat.4 Simpson diversity  4.762839  4.824801 0.3686884  4.102185
## 19  Quadrat.5  Species richness 19.000000 19.896751 3.5850087 19.000000
## 20  Quadrat.5 Shannon diversity  5.076505  5.269242 0.4200738  4.445912
## 21  Quadrat.5 Simpson diversity  2.755773  2.773417 0.1927577  2.395618
## 22  Quadrat.6  Species richness 10.000000 14.490302 4.7693830 10.000000
## 23  Quadrat.6 Shannon diversity  4.290540  4.357068 0.1691627  4.025516
## 24  Quadrat.6 Simpson diversity  3.687712  3.709244 0.1260705  3.462150
## 25  Quadrat.7  Species richness 15.000000 15.897256 4.2998167 15.000000
## 26  Quadrat.7 Shannon diversity  6.415378  6.577376 0.3853552  5.822094
## 27  Quadrat.7 Simpson diversity  4.795151  4.851456 0.3403663  4.184351
## 28  Quadrat.8  Species richness 14.000000 14.249416 2.1488251 14.000000
## 29  Quadrat.8 Shannon diversity  6.244415  6.346618 0.3229622  5.713623
## 30  Quadrat.8 Simpson diversity  4.350337  4.384741 0.2487748  3.897151
## 31  Quadrat.9  Species richness 16.000000 17.580488 4.2883041 16.000000
## 32  Quadrat.9 Shannon diversity  8.450869  9.469144 1.1347160  7.245142
## 33  Quadrat.9 Simpson diversity  5.475570  5.795812 0.8596140  4.110999
##          UCL
## 1  15.170904
## 2   5.943506
## 3   4.034899
## 4  17.082968
## 5   5.038398
## 6   3.838183
## 7  14.470783
## 8  10.214445
## 9   8.193373
## 10 15.083827
## 11 10.563235
## 12  9.194736
## 13 36.066414
## 14  6.491898
## 15  4.865934
## 16 25.834660
## 17  7.279468
## 18  5.547417
## 19 26.923239
## 20  6.092571
## 21  3.151215
## 22 23.838121
## 23  4.688621
## 24  3.956338
## 25 24.324742
## 26  7.332659
## 27  5.518562
## 28 18.461036
## 29  6.979612
## 30  4.872331
## 31 25.985409
## 32 11.693147
## 33  7.480624
Barrow_Data_1 <- iNEXT(Barrow_Nos, q=c(1), datatype = "abundance")

Barrow_Data_1
## Compare 11 assemblages with Hill number order q = 1.
## $class: iNEXT
## 
## $DataInfo: basic data information
##    Assemblage   n S.obs     SC f1 f2 f3 f4 f5 f6 f7 f8 f9 f10
## 1   Quadrat.1 132    10 0.9925  1  1  1  3  0  0  0  1  0   0
## 2   Quadrat.2 444    14 1.0000  0  1  1  0  1  1  0  0  0   0
## 3   Quadrat.3 446    14 0.9888  5  0  0  1  0  0  0  0  0   1
## 4   Quadrat.4 294    12 0.9898  3  1  0  0  0  0  0  1  1   0
## 5   Quadrat.5 277    19 0.9893  3  5  4  1  0  1  0  1  0   0
## 6   Quadrat.6 464    10 0.9935  3  1  1  0  0  0  0  1  0   0
## 7   Quadrat.7 328    15 0.9909  3  5  0  0  0  0  0  0  0   2
## 8   Quadrat.8 428    14 0.9977  1  2  1  0  1  0  1  0  0   0
## 9   Quadrat.9  82    16 0.9527  4  5  2  1  1  1  0  0  0   0
## 10 Quadrat.10 250    10 0.9920  2  1  0  0  3  0  0  0  0   1
## 11 Quadrat.11 155    13 1.0000  0  1  1  3  1  2  0  0  0   0
## 
## $iNextEst: diversity estimates with rarefied and extrapolated samples.
## $size_based (LCL and UCL are obtained for fixed size.)
## 
##     Assemblage   m        Method Order.q       qD   qD.LCL    qD.UCL        SC
## 1    Quadrat.1   1   Rarefaction       1 1.000000 1.000000  1.000000 0.2982882
## 10   Quadrat.1  66   Rarefaction       1 4.711402 3.921457  5.501346 0.9681311
## 20   Quadrat.1 132      Observed       1 4.909318 4.067852  5.750783 0.9925382
## 30   Quadrat.1 195 Extrapolation       1 4.984681 4.122228  5.847134 0.9971273
## 40   Quadrat.1 264 Extrapolation       1 5.033897 4.157575  5.910219 0.9989902
## 41   Quadrat.2   1   Rarefaction       1 1.000000 1.000000  1.000000 0.1177984
## 50   Quadrat.2 222   Rarefaction       1 9.669129 9.122265 10.215993 0.9949676
## 60   Quadrat.2 444      Observed       1 9.824330 9.268105 10.380556 1.0000000
## 70   Quadrat.2 654 Extrapolation       1 9.880874 9.322178 10.439570 1.0000000
## 80   Quadrat.2 888 Extrapolation       1 9.918790 9.358318 10.479262 1.0000000
## 81   Quadrat.3   1   Rarefaction       1 1.000000 1.000000  1.000000 0.2216758
## 90   Quadrat.3 223   Rarefaction       1 5.727900 5.211360  6.244439 0.9876404
## 100  Quadrat.3 446      Observed       1 5.827336 5.289357  6.365315 0.9888018
## 110  Quadrat.3 657 Extrapolation       1 5.874481 5.325157  6.423805 0.9911643
## 120  Quadrat.3 892 Extrapolation       1 5.910085 5.351190  6.468980 0.9932137
## 121  Quadrat.4   1   Rarefaction       1 1.000000 1.000000  1.000000 0.2072624
## 130  Quadrat.4 147   Rarefaction       1 6.194376 5.440031  6.948721 0.9861074
## 140  Quadrat.4 294      Observed       1 6.330739 5.548344  7.113134 0.9898191
## 150  Quadrat.4 433 Extrapolation       1 6.390793 5.596872  7.184714 0.9925768
## 160  Quadrat.4 588 Extrapolation       1 6.434143 5.632138  7.236147 0.9947809
## 161  Quadrat.5   1   Rarefaction       1 1.000000 1.000000  1.000000 0.3605661
## 170  Quadrat.5 138   Rarefaction       1 4.870478 4.038941  5.702015 0.9576645
## 180  Quadrat.5 277      Observed       1 5.076505 4.199599  5.953412 0.9892989
## 190  Quadrat.5 408 Extrapolation       1 5.154233 4.261007  6.047460 0.9977796
## 200  Quadrat.5 554 Extrapolation       1 5.204554 4.300288  6.108821 0.9996152
## 201  Quadrat.6   1   Rarefaction       1 1.000000 1.000000  1.000000 0.2695967
## 210  Quadrat.6 232   Rarefaction       1 4.240210 3.982401  4.498019 0.9896514
## 220  Quadrat.6 464      Observed       1 4.290540 4.019183  4.561897 0.9935438
## 230  Quadrat.6 684 Extrapolation       1 4.312906 4.035305  4.590506 0.9952956
## 240  Quadrat.6 928 Extrapolation       1 4.329034 4.046806  4.611262 0.9966884
## 241  Quadrat.7   1   Rarefaction       1 1.000000 1.000000  1.000000 0.2061237
## 250  Quadrat.7 164   Rarefaction       1 6.248599 5.560854  6.936343 0.9755530
## 260  Quadrat.7 328      Observed       1 6.415378 5.699481  7.131275 0.9909460
## 270  Quadrat.7 483 Extrapolation       1 6.481166 5.755018  7.207314 0.9981202
## 280  Quadrat.7 656 Extrapolation       1 6.523592 5.790471  7.256713 0.9996748
## 281  Quadrat.8   1   Rarefaction       1 1.000000 1.000000  1.000000 0.2280636
## 290  Quadrat.8 214   Rarefaction       1 6.136662 5.440501  6.832823 0.9902972
## 300  Quadrat.8 428      Observed       1 6.244415 5.530409  6.958422 0.9976852
## 310  Quadrat.8 631 Extrapolation       1 6.284788 5.564795  7.004781 0.9996513
## 320  Quadrat.8 856 Extrapolation       1 6.311195 5.587330  7.035060 0.9999572
## 321  Quadrat.9   1   Rarefaction       1 1.000000 1.000000  1.000000 0.1725384
## 330  Quadrat.9  41   Rarefaction       1 7.494984 5.889311  9.100657 0.8625042
## 340  Quadrat.9  82      Observed       1 8.450869 6.590900 10.310837 0.9526800
## 350  Quadrat.9 121 Extrapolation       1 8.851415 6.883456 10.819375 0.9855393
## 360  Quadrat.9 164 Extrapolation       1 9.113130 7.066330 11.159930 0.9960869
## 361 Quadrat.10   1   Rarefaction       1 1.000000 1.000000  1.000000 0.2881928
## 370 Quadrat.10 125   Rarefaction       1 4.280396 3.845903  4.714889 0.9843510
## 380 Quadrat.10 250      Observed       1 4.373262 3.920399  4.826125 0.9920320
## 390 Quadrat.10 368 Extrapolation       1 4.411537 3.950423  4.872651 0.9950346
## 400 Quadrat.10 500 Extrapolation       1 4.438123 3.971056  4.905191 0.9970746
## 401 Quadrat.11   1   Rarefaction       1 1.000000 1.000000  1.000000 0.1459573
## 410 Quadrat.11  77   Rarefaction       1 8.296187 7.140050  9.452323 0.9750464
## 420 Quadrat.11 155      Observed       1 8.680817 7.474640  9.886995 1.0000000
## 430 Quadrat.11 228 Extrapolation       1 8.816410 7.596746 10.036073 1.0000000
## 440 Quadrat.11 310 Extrapolation       1 8.907843 7.679613 10.136073 1.0000000
##        SC.LCL    SC.UCL
## 1   0.2334533 0.3631232
## 10  0.9537737 0.9824884
## 20  0.9767280 1.0000000
## 30  0.9873397 1.0000000
## 40  0.9925591 1.0000000
## 41  0.1082851 0.1273117
## 50  0.9919946 0.9979405
## 60  0.9972181 1.0000000
## 70  0.9987739 1.0000000
## 80  0.9994415 1.0000000
## 81  0.2010594 0.2422923
## 90  0.9806151 0.9946656
## 100 0.9820820 0.9955217
## 110 0.9844174 0.9979111
## 120 0.9871302 0.9992972
## 121 0.1709736 0.2435513
## 130 0.9788268 0.9933880
## 140 0.9818329 0.9978053
## 150 0.9854384 0.9997153
## 160 0.9891243 1.0000000
## 161 0.3007667 0.4203655
## 170 0.9459039 0.9694251
## 180 0.9786716 0.9999262
## 190 0.9889313 1.0000000
## 200 0.9930042 1.0000000
## 201 0.2522667 0.2869267
## 210 0.9831285 0.9961742
## 220 0.9875066 0.9995809
## 230 0.9895084 1.0000000
## 240 0.9918237 1.0000000
## 241 0.1756629 0.2365844
## 250 0.9675362 0.9835697
## 260 0.9815577 1.0000000
## 270 0.9895143 1.0000000
## 280 0.9925936 1.0000000
## 281 0.1996729 0.2564544
## 290 0.9852271 0.9953672
## 300 0.9924631 1.0000000
## 310 0.9960983 1.0000000
## 320 0.9974908 1.0000000
## 321 0.1169228 0.2281540
## 330 0.8265969 0.8984114
## 340 0.9152016 0.9901585
## 350 0.9491028 1.0000000
## 360 0.9659974 1.0000000
## 361 0.2616146 0.3147710
## 370 0.9747577 0.9939442
## 380 0.9828052 1.0000000
## 390 0.9883481 1.0000000
## 400 0.9921550 1.0000000
## 401 0.1163998 0.1755147
## 410 0.9647490 0.9853439
## 420 0.9895955 1.0000000
## 430 0.9942286 1.0000000
## 440 0.9967320 1.0000000
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$size_based to view complete output.
## 
## $coverage_based (LCL and UCL are obtained for fixed coverage; interval length is wider due to varying size in bootstraps.)
## 
##     Assemblage        SC   m        Method Order.q       qD    qD.LCL    qD.UCL
## 1    Quadrat.1 0.2982883   1   Rarefaction       1 1.000000 0.8807936  1.119207
## 10   Quadrat.1 0.9681311  66   Rarefaction       1 4.711402 3.9027569  5.520047
## 20   Quadrat.1 0.9925382 132      Observed       1 4.909318 4.0450069  5.773629
## 30   Quadrat.1 0.9971273 195 Extrapolation       1 4.984681 4.1005837  5.868778
## 40   Quadrat.1 0.9989902 264 Extrapolation       1 5.033897 4.1371420  5.930652
## 41   Quadrat.2 0.1177984   1   Rarefaction       1 1.000000 0.9614352  1.038565
## 45   Quadrat.2 0.9824284  99   Rarefaction       1 9.293222 8.7616404  9.824804
## 50   Quadrat.2 0.9949676 222   Rarefaction       1 9.669129 9.1347261 10.203533
## 55   Quadrat.2 0.9986248 344   Rarefaction       1 9.779881 9.2452150 10.314546
## 59   Quadrat.2 1.0000000 444      Observed       1 9.824330 9.2862691 10.362392
## 60   Quadrat.3 0.2216778   1   Rarefaction       1 1.000008 0.9473382  1.052677
## 69   Quadrat.3 0.9876404 223   Rarefaction       1 5.727900 5.1195516  6.336247
## 79   Quadrat.3 0.9888018 446      Observed       1 5.827336 5.2145339  6.440138
## 89   Quadrat.3 0.9911643 657 Extrapolation       1 5.874481 5.2626577  6.486304
## 99   Quadrat.3 0.9932137 892 Extrapolation       1 5.910085 5.3017449  6.518425
## 100  Quadrat.4 0.2072643   1   Rarefaction       1 1.000008 0.9222092  1.077807
## 109  Quadrat.4 0.9861074 147   Rarefaction       1 6.194376 5.3885820  7.000170
## 119  Quadrat.4 0.9898191 294      Observed       1 6.330739 5.5068609  7.154617
## 129  Quadrat.4 0.9925768 433 Extrapolation       1 6.390793 5.5659608  7.215625
## 139  Quadrat.4 0.9947809 588 Extrapolation       1 6.434143 5.6190780  7.249207
## 140  Quadrat.5 0.3605678   1   Rarefaction       1 1.000004 0.9048495  1.095158
## 149  Quadrat.5 0.9576645 138   Rarefaction       1 4.870478 4.0335423  5.707414
## 159  Quadrat.5 0.9892989 277      Observed       1 5.076505 4.2032950  5.949716
## 169  Quadrat.5 0.9977796 408 Extrapolation       1 5.154233 4.2537352  6.054732
## 179  Quadrat.5 0.9996152 554 Extrapolation       1 5.204554 4.2949871  6.114122
## 180  Quadrat.6 0.2695998   1   Rarefaction       1 1.000009 0.9736950  1.026323
## 189  Quadrat.6 0.9896514 232   Rarefaction       1 4.240210 3.9276114  4.552809
## 199  Quadrat.6 0.9935438 464      Observed       1 4.290540 3.9875847  4.593495
## 209  Quadrat.6 0.9952956 684 Extrapolation       1 4.312906 4.0147306  4.611081
## 219  Quadrat.6 0.9966884 928 Extrapolation       1 4.329034 4.0354641  4.622604
## 220  Quadrat.7 0.2061237   1   Rarefaction       1 1.000000 0.9203793  1.079621
## 229  Quadrat.7 0.9755530 164   Rarefaction       1 6.248599 5.5245448  6.972652
## 239  Quadrat.7 0.9909460 328      Observed       1 6.415378 5.6969890  7.133768
## 249  Quadrat.7 0.9981202 483 Extrapolation       1 6.481166 5.7422386  7.220094
## 259  Quadrat.7 0.9996748 656 Extrapolation       1 6.523592 5.7809792  7.266206
## 260  Quadrat.8 0.2280665   1   Rarefaction       1 1.000011 0.9311113  1.068910
## 269  Quadrat.8 0.9902972 214   Rarefaction       1 6.136662 5.4407132  6.832612
## 279  Quadrat.8 0.9976852 428      Observed       1 6.244415 5.5390242  6.949807
## 289  Quadrat.8 0.9996513 631 Extrapolation       1 6.284788 5.5694941  7.000082
## 299  Quadrat.8 0.9999572 856 Extrapolation       1 6.311195 5.5904609  7.031929
## 300  Quadrat.9 0.1725400   1   Rarefaction       1 1.000008 0.8638712  1.136146
## 309  Quadrat.9 0.8625042  41   Rarefaction       1 7.494984 5.8536946  9.136273
## 319  Quadrat.9 0.9526800  82      Observed       1 8.450869 6.4705386 10.431199
## 329  Quadrat.9 0.9855393 121 Extrapolation       1 8.851415 6.6948462 11.007985
## 339  Quadrat.9 0.9960869 164 Extrapolation       1 9.113130 6.9265304 11.299730
## 340 Quadrat.10 0.2881978   1   Rarefaction       1 1.000014 0.9631573  1.036870
## 349 Quadrat.10 0.9843510 125   Rarefaction       1 4.280396 3.8352040  4.725588
## 359 Quadrat.10 0.9920320 250      Observed       1 4.373262 3.9045908  4.841932
## 369 Quadrat.10 0.9950346 368 Extrapolation       1 4.411537 3.9361369  4.886937
## 379 Quadrat.10 0.9970746 500 Extrapolation       1 4.438123 3.9584210  4.917826
## 380 Quadrat.11 0.1459599   1   Rarefaction       1 1.000017 0.8814945  1.118539
## 384 Quadrat.11 0.9059712  35   Rarefaction       1 7.431555 6.3996984  8.463411
## 389 Quadrat.11 0.9750465  77   Rarefaction       1 8.296187 7.2449690  9.347404
## 394 Quadrat.11 0.9953552 120   Rarefaction       1 8.573161 7.4956503  9.650671
## 398 Quadrat.11 1.0000000 155      Observed       1 8.680817 7.5805254  9.781109
## 
## NOTE: The above output only shows five estimates for each assemblage; call iNEXT.object$iNextEst$coverage_based to view complete output.
## 
## $AsyEst: asymptotic diversity estimates along with related statistics.
##    Assemblage         Diversity  Observed Estimator      s.e.       LCL
## 1   Quadrat.1  Species richness 10.000000 10.496212 1.9751829 10.000000
## 2   Quadrat.1 Shannon diversity  4.909318  5.102191 0.5492630  4.025655
## 3   Quadrat.1 Simpson diversity  3.293762  3.352462 0.4133880  2.542237
## 4  Quadrat.10  Species richness 10.000000 11.992000 2.5911508 10.000000
## 5  Quadrat.10 Shannon diversity  4.373262  4.478543 0.2512438  3.986114
## 6  Quadrat.10 Simpson diversity  3.435954  3.469900 0.1646133  3.147264
## 7  Quadrat.11  Species richness 13.000000 13.000000 0.7983692 13.000000
## 8  Quadrat.11 Shannon diversity  8.680817  9.034744 0.5985121  7.861682
## 9  Quadrat.11 Simpson diversity  6.602088  6.851320 0.6289252  5.618650
## 10  Quadrat.2  Species richness 14.000000 14.000000 0.6937526 14.000000
## 11  Quadrat.2 Shannon diversity  9.824330  9.972034 0.3444015  9.297019
## 12  Quadrat.2 Simpson diversity  8.348268  8.489081 0.4041832  7.696896
## 13  Quadrat.3  Species richness 14.000000 23.977578 5.5031369 14.000000
## 14  Quadrat.3 Shannon diversity  5.827336  5.980165 0.2668678  5.457113
## 15  Quadrat.3 Simpson diversity  4.475856  4.511092 0.1899260  4.138844
## 16  Quadrat.4  Species richness 12.000000 16.484694 3.6328049 12.000000
## 17  Quadrat.4 Shannon diversity  6.330739  6.508285 0.3279960  5.865424
## 18  Quadrat.4 Simpson diversity  4.762839  4.824801 0.3512690  4.136327
## 19  Quadrat.5  Species richness 19.000000 19.896751 4.3534544 19.000000
## 20  Quadrat.5 Shannon diversity  5.076505  5.269242 0.4083239  4.468942
## 21  Quadrat.5 Simpson diversity  2.755773  2.773417 0.2062539  2.369166
## 22  Quadrat.6  Species richness 10.000000 14.490302 6.1673528 10.000000
## 23  Quadrat.6 Shannon diversity  4.290540  4.357068 0.2009661  3.963182
## 24  Quadrat.6 Simpson diversity  3.687712  3.709244 0.1334574  3.447672
## 25  Quadrat.7  Species richness 15.000000 15.897256 3.6532038 15.000000
## 26  Quadrat.7 Shannon diversity  6.415378  6.577376 0.3403591  5.910285
## 27  Quadrat.7 Simpson diversity  4.795151  4.851456 0.3149454  4.234175
## 28  Quadrat.8  Species richness 14.000000 14.249416 1.9895651 14.000000
## 29  Quadrat.8 Shannon diversity  6.244415  6.346618 0.3424294  5.675468
## 30  Quadrat.8 Simpson diversity  4.350337  4.384741 0.2664147  3.862578
## 31  Quadrat.9  Species richness 16.000000 17.580488 8.3038108 16.000000
## 32  Quadrat.9 Shannon diversity  8.450869  9.469144 1.1909444  7.134936
## 33  Quadrat.9 Simpson diversity  5.475570  5.795812 0.9047340  4.022565
##          UCL
## 1  14.367499
## 2   6.178727
## 3   4.162688
## 4  17.070562
## 5   4.970972
## 6   3.792536
## 7  14.564775
## 8  10.207806
## 9   8.083991
## 10 15.359730
## 11 10.647048
## 12  9.281265
## 13 34.763529
## 14  6.503216
## 15  4.883340
## 16 23.604861
## 17  7.151145
## 18  5.513276
## 19 28.429365
## 20  6.069542
## 21  3.177667
## 22 26.578091
## 23  4.750955
## 24  3.970816
## 25 23.057404
## 26  7.244468
## 27  5.468738
## 28 18.148892
## 29  7.017767
## 30  4.906904
## 31 33.855658
## 32 11.803352
## 33  7.569058

#Now to look at further things, such as sample coverage#

Barrowout1 <- estimateD(Barrow_Nos, q = c(0,1,2), datatype = "abundance", base="size")
Barrowout1
##    Assemblage   m        Method Order.q        SC        qD    qD.LCL    qD.UCL
## 1   Quadrat.1 164 Extrapolation       0 0.9954051 10.190652  8.379289 12.002016
## 2   Quadrat.1 164 Extrapolation       1 0.9954051  4.952234  4.036187  5.868281
## 3   Quadrat.1 164 Extrapolation       2 0.9954051  3.305054  2.557407  4.052700
## 4   Quadrat.2 164   Rarefaction       0 0.9912442 13.189205 12.437678 13.940733
## 5   Quadrat.2 164   Rarefaction       1 0.9912442  9.559224  8.965611 10.152837
## 6   Quadrat.2 164   Rarefaction       2 0.9912442  8.118355  7.425163  8.811547
## 7   Quadrat.3 164   Rarefaction       0 0.9861054 10.668601  9.179210 12.157992
## 8   Quadrat.3 164   Rarefaction       1 0.9861054  5.668334  5.190690  6.145977
## 9   Quadrat.3 164   Rarefaction       2 0.9861054  4.416538  4.057216  4.775859
## 10  Quadrat.4 164   Rarefaction       0 0.9866832 10.476948  8.879937 12.073959
## 11  Quadrat.4 164   Rarefaction       1 0.9866832  6.220335  5.680025  6.760645
## 12  Quadrat.4 164   Rarefaction       2 0.9866832  4.714842  4.109221  5.320463
## 13  Quadrat.5 164   Rarefaction       0 0.9662006 16.649438 14.699859 18.599017
## 14  Quadrat.5 164   Rarefaction       1 0.9662006  4.932905  4.197933  5.667877
## 15  Quadrat.5 164   Rarefaction       2 0.9662006  2.743747  2.341058  3.146436
## 16  Quadrat.6 164   Rarefaction       0 0.9872702  7.343957  5.991921  8.695993
## 17  Quadrat.6 164   Rarefaction       1 0.9872702  4.205418  3.925436  4.485400
## 18  Quadrat.6 164   Rarefaction       2 0.9872702  3.648964  3.441775  3.856153
## 19  Quadrat.7 164   Rarefaction       0 0.9755530 12.252127 10.436649 14.067605
## 20  Quadrat.7 164   Rarefaction       1 0.9755530  6.248599  5.595939  6.901259
## 21  Quadrat.7 164   Rarefaction       2 0.9755530  4.740137  4.135879  5.344395
## 22  Quadrat.8 164   Rarefaction       0 0.9865650 12.266054 11.190108 13.342000
## 23  Quadrat.8 164   Rarefaction       1 0.9865650  6.073900  5.500525  6.647275
## 24  Quadrat.8 164   Rarefaction       2 0.9865650  4.296076  3.853152  4.738999
## 25  Quadrat.9 164 Extrapolation       0 0.9960869 17.449789 11.828216 23.071362
## 26  Quadrat.9 164 Extrapolation       1 0.9960869  9.113130  6.586498 11.639763
## 27  Quadrat.9 164 Extrapolation       2 0.9960869  5.631141  3.936827  7.325456
## 28 Quadrat.10 164   Rarefaction       0 0.9884901  9.181189  7.527466 10.834911
## 29 Quadrat.10 164   Rarefaction       1 0.9884901  4.322982  3.789468  4.856496
## 30 Quadrat.10 164   Rarefaction       2 0.9884901  3.418417  3.053613  3.783221
## 31 Quadrat.11 164 Extrapolation       0 1.0000000 13.000000 12.082853 13.917147
## 32 Quadrat.11 164 Extrapolation       1 1.0000000  8.701280  7.614743  9.787817
## 33 Quadrat.11 164 Extrapolation       2 1.0000000  6.615295  5.480026  7.750563
Barrowout2 <- estimateD(Barrow_Nos, q = c(0,1,2), datatype = "abundance", base="coverage")
Barrowout2
##    Assemblage        m        Method Order.q        SC        qD    qD.LCL
## 1   Quadrat.1 138.2628 Extrapolation       0 0.9932137 10.044922  7.296962
## 2   Quadrat.1 138.2628 Extrapolation       1 0.9932137  4.918588  4.086009
## 3   Quadrat.1 138.2628 Extrapolation       2 0.9932137  3.296376  2.674176
## 4   Quadrat.2 190.4990   Rarefaction       0 0.9932137 13.394898 12.444257
## 5   Quadrat.2 190.4990   Rarefaction       1 0.9932137  9.617527  9.041586
## 6   Quadrat.2 190.4990   Rarefaction       2 0.9932137  8.167971  7.562417
## 7   Quadrat.3 892.0000 Extrapolation       0 0.9932137 17.930966  8.808126
## 8   Quadrat.3 892.0000 Extrapolation       1 0.9932137  5.910085  5.439717
## 9   Quadrat.3 892.0000 Extrapolation       2 0.9932137  4.493405  4.208018
## 10  Quadrat.4 472.4666 Extrapolation       0 0.9932137 13.495319  7.108766
## 11  Quadrat.4 472.4666 Extrapolation       1 0.9932137  6.403789  5.643227
## 12  Quadrat.4 472.4666 Extrapolation       2 0.9932137  4.786056  3.994126
## 13  Quadrat.5 314.9374 Extrapolation       0 0.9932137 19.328057 13.621787
## 14  Quadrat.5 314.9374 Extrapolation       1 0.9932137  5.103273  4.271975
## 15  Quadrat.5 314.9374 Extrapolation       2 0.9932137  2.757887  2.303609
## 16  Quadrat.6 431.6331   Rarefaction       0 0.9932137  9.785694  4.127144
## 17  Quadrat.6 431.6331   Rarefaction       1 0.9932137  4.286286  3.934105
## 18  Quadrat.6 431.6331   Rarefaction       2 0.9932137  3.686107  3.433440
## 19  Quadrat.7 356.4264 Extrapolation       0 0.9932137 15.224732 10.590174
## 20  Quadrat.7 356.4264 Extrapolation       1 0.9932137  6.430142  5.766078
## 21  Quadrat.7 356.4264 Extrapolation       2 0.9932137  4.799593  4.174515
## 22  Quadrat.8 274.3834   Rarefaction       0 0.9932137 13.332443 10.478515
## 23  Quadrat.8 274.3834   Rarefaction       1 0.9932137  6.183540  5.477202
## 24  Quadrat.8 274.3834   Rarefaction       2 0.9932137  4.331310  3.805793
## 25  Quadrat.9 145.8877 Extrapolation       0 0.9932137 17.353825  4.380603
## 26  Quadrat.9 145.8877 Extrapolation       1 0.9932137  9.020112  6.429659
## 27  Quadrat.9 145.8877 Extrapolation       2 0.9932137  5.611348  3.951338
## 28 Quadrat.10 290.0508 Extrapolation       0 0.9932137 10.295420  7.233127
## 29 Quadrat.10 290.0508 Extrapolation       1 0.9932137  4.388231  3.941277
## 30 Quadrat.10 290.0508 Extrapolation       2 0.9932137  3.440602  3.113739
## 31 Quadrat.11 111.6350   Rarefaction       0 0.9932137 12.883437 11.289129
## 32 Quadrat.11 111.6350   Rarefaction       1 0.9932137  8.536622  7.374565
## 33 Quadrat.11 111.6350   Rarefaction       2 0.9932137  6.510090  5.291681
##       qD.UCL
## 1  12.792882
## 2   5.751167
## 3   3.918576
## 4  14.345540
## 5  10.193468
## 6   8.773526
## 7  27.053807
## 8   6.380453
## 9   4.778792
## 10 19.881873
## 11  7.164351
## 12  5.577987
## 13 25.034328
## 14  5.934572
## 15  3.212164
## 16 15.444244
## 17  4.638467
## 18  3.938775
## 19 19.859290
## 20  7.094206
## 21  5.424672
## 22 16.186372
## 23  6.889879
## 24  4.856828
## 25 30.327046
## 26 11.610566
## 27  7.271358
## 28 13.357712
## 29  4.835185
## 30  3.767464
## 31 14.477745
## 32  9.698680
## 33  7.728498

#Looking at species evenness using the vegan package#

H <- diversity(Barrow_Nos)

Bevenness <- H/log(specnumber(Barrow_Nos))

summary(Bevenness)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
##  0.1435  0.6500  0.7629  0.7022  0.8691  1.0000      22
H1 <- diversity(Barrow_Nos$Quadrat.1)

Bevenness1 <- H1/log(specnumber(Barrow_Nos$Quadrat.1))

summary(Bevenness1)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##   0.691   0.691   0.691   0.691   0.691   0.691
H2 <- diversity(Barrow_Nos$Quadrat.2)

Bevenness2 <- H2/log(specnumber(Barrow_Nos$Quadrat.2))

summary(Bevenness2)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##  0.8658  0.8658  0.8658  0.8658  0.8658  0.8658
H3 <- diversity(Barrow_Nos$Quadrat.3)

Bevenness3 <- H3/log(specnumber(Barrow_Nos$Quadrat.3))

summary(Bevenness3)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##  0.6679  0.6679  0.6679  0.6679  0.6679  0.6679
H4 <- diversity(Barrow_Nos$Quadrat.4)

Bevenness4 <- H4/log(specnumber(Barrow_Nos$Quadrat.4))

summary(Bevenness4)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##  0.7427  0.7427  0.7427  0.7427  0.7427  0.7427
H5 <- diversity(Barrow_Nos$Quadrat.5)

Bevenness5 <- H5/log(specnumber(Barrow_Nos$Quadrat.5))

summary(Bevenness5)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##  0.5518  0.5518  0.5518  0.5518  0.5518  0.5518
H6 <- diversity(Barrow_Nos$Quadrat.6)

Bevenness6 <- H6/log(specnumber(Barrow_Nos$Quadrat.6))

summary(Bevenness6)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##  0.6325  0.6325  0.6325  0.6325  0.6325  0.6325
H7 <- diversity(Barrow_Nos$Quadrat.7)

Bevenness7 <- H7/log(specnumber(Barrow_Nos$Quadrat.7))

summary(Bevenness7)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##  0.6864  0.6864  0.6864  0.6864  0.6864  0.6864
H8 <- diversity(Barrow_Nos$Quadrat.8)

Bevenness8 <- H8/log(specnumber(Barrow_Nos$Quadrat.8))

summary(Bevenness8)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##  0.6941  0.6941  0.6941  0.6941  0.6941  0.6941
H9 <- diversity(Barrow_Nos$Quadrat.9)

Bevenness9 <- H9/log(specnumber(Barrow_Nos$Quadrat.9))

summary(Bevenness9)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##  0.7698  0.7698  0.7698  0.7698  0.7698  0.7698
H10 <- diversity(Barrow_Nos$Quadrat.10)

Bevenness10 <- H10/log(specnumber(Barrow_Nos$Quadrat.10))

summary(Bevenness10)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##  0.6408  0.6408  0.6408  0.6408  0.6408  0.6408
H11 <- diversity(Barrow_Nos$Quadrat.11)

Bevenness11 <- H11/log(specnumber(Barrow_Nos$Quadrat.11))

summary(Bevenness11)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##  0.8426  0.8426  0.8426  0.8426  0.8426  0.8426

##Now to generate graphs to better visually examine species curves etc##

Barrow_Data_Graph1 <- ggiNEXT(x = Barrow_Data, se=TRUE, type = 1,
                              facet.var = "None", grey=TRUE)
## Scale for fill is already present.
## Adding another scale for fill, which will replace the existing scale.
## Scale for colour is already present.
## Adding another scale for colour, which will replace the existing scale.
Barrow_Data_Graph1
## Warning: The shape palette can deal with a maximum of 6 discrete values because
## more than 6 becomes difficult to discriminate; you have 11. Consider
## specifying shapes manually if you must have them.
## Warning: Removed 5 rows containing missing values (`geom_point()`).

g7 <- Barrow_Data_Graph1 + theme_hc(style = "darkunica") +
  scale_colour_hc("darkunica")
## Scale for colour is already present.
## Adding another scale for colour, which will replace the existing scale.
g7
## Warning: The shape palette can deal with a maximum of 6 discrete values because
## more than 6 becomes difficult to discriminate; you have 11. Consider
## specifying shapes manually if you must have them.

## Warning: Removed 5 rows containing missing values (`geom_point()`).

Barrow_Data_Graph2 <- ggiNEXT(x = Barrow_Data, se=TRUE, type = 1,
                              facet.var="None", grey= TRUE) 
## Scale for fill is already present.
## Adding another scale for fill, which will replace the existing scale.
## Scale for colour is already present.
## Adding another scale for colour, which will replace the existing scale.
Barrow_Data_Graph2
## Warning: The shape palette can deal with a maximum of 6 discrete values because
## more than 6 becomes difficult to discriminate; you have 11. Consider
## specifying shapes manually if you must have them.

## Warning: Removed 5 rows containing missing values (`geom_point()`).

plot(Barrow_Data, type=1)

Barrow_Data_Graph3 <- ggiNEXT(x = Barrow_Data, se=TRUE, type = 2,
                              facet.var="None", grey = TRUE) 
## Scale for fill is already present.
## Adding another scale for fill, which will replace the existing scale.
## Scale for colour is already present.
## Adding another scale for colour, which will replace the existing scale.
Barrow_Data_Graph3
## Warning: The shape palette can deal with a maximum of 6 discrete values because
## more than 6 becomes difficult to discriminate; you have 11. Consider
## specifying shapes manually if you must have them.

## Warning: Removed 5 rows containing missing values (`geom_point()`).

plot(Barrow_Data, type=2)

Barrow_Data_Graph4 <- ggiNEXT(x = Barrow_Data, se=TRUE, type = 3,
                              facet.var="None", grey= TRUE) 
## Scale for fill is already present.
## Adding another scale for fill, which will replace the existing scale.
## Scale for colour is already present.
## Adding another scale for colour, which will replace the existing scale.
Barrow_Data_Graph4
## Warning: The shape palette can deal with a maximum of 6 discrete values because
## more than 6 becomes difficult to discriminate; you have 11. Consider
## specifying shapes manually if you must have them.

## Warning: Removed 5 rows containing missing values (`geom_point()`).

plot(Barrow_Data, type=3)