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##The following is written by Savanna van Mesdag, going through the relevant coding and analyses for the biodiversity analyses for the six anthropogenic substrate study sites.
#setwd#
#To run the following code to carry out the analyses, the following packages must be installed#
install.packages("vegan", repos = " https://github.com/vegandevs/vegan")
## Installing package into 'C:/Users/Savanna/AppData/Local/R/win-library/4.3'
## (as 'lib' is unspecified)
## Warning: unable to access index for repository https://github.com/vegandevs/vegan/src/contrib:
## cannot open URL ' https://github.com/vegandevs/vegan/src/contrib/PACKAGES'
## Warning: package 'vegan' is not available for this version of R
##
## A version of this package for your version of R might be available elsewhere,
## see the ideas at
## https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
## Warning: unable to access index for repository https://github.com/vegandevs/vegan/bin/windows/contrib/4.3:
## cannot open URL ' https://github.com/vegandevs/vegan/bin/windows/contrib/4.3/PACKAGES'
install.packages("labdsv", repos = "https://github.com/cran/labdsv")
## Installing package into 'C:/Users/Savanna/AppData/Local/R/win-library/4.3'
## (as 'lib' is unspecified)
## Warning: unable to access index for repository https://github.com/cran/labdsv/src/contrib:
## cannot open URL 'https://github.com/cran/labdsv/src/contrib/PACKAGES'
## Warning: package 'labdsv' is not available for this version of R
##
## A version of this package for your version of R might be available elsewhere,
## see the ideas at
## https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
## Warning: unable to access index for repository https://github.com/cran/labdsv/bin/windows/contrib/4.3:
## cannot open URL 'https://github.com/cran/labdsv/bin/windows/contrib/4.3/PACKAGES'
##The packages also need to be loaded prior to running the analyses#
library(vegan)
## Loading required package: permute
## Loading required package: lattice
## This is vegan 2.6-4
library(labdsv)
## Warning: package 'labdsv' was built under R version 4.3.1
## Loading required package: mgcv
## Loading required package: nlme
## This is mgcv 1.8-42. For overview type 'help("mgcv-package")'.
## This is labdsv 2.1-0
## convert existing ordinations with as.dsvord()
##
## Attaching package: 'labdsv'
## The following objects are masked from 'package:vegan':
##
## calibrate, scores
## The following objects are masked from 'package:stats':
##
## density, loadings
#Loading the datasets for the six study sites…
urlfile1 <- 'https://raw.githubusercontent.com/Savannankvm/Indval-analyses-for-PhD-data-for-six-study-sites/PhD-files/Plant_Species_with_site_names.csv'
PlantSpecies <-read.csv(urlfile1 , row.names = 1)
urlfile2 <- 'https://raw.githubusercontent.com/Savannankvm/Indval-analyses-for-PhD-data-for-six-study-sites/PhD-files/Plant_Chemistry_with_site_names.csv'
PlantChemistry <-read.csv(urlfile2 , row.names = 1)
#Turning the datasets into dataframes to make them suitable for the Indval analyses
PlantSpecies1 <- data.frame(PlantSpecies)
PlantChemistry1 <- data.frame(PlantChemistry)
#Doing my first analysis, looking into indicator species for quartz. #Much of the code relates to developing a tidy summary with p values for the most #statistically significant indicator species.
clustQuartz <- cut(PlantChemistry1$Quartz, 5, labels=FALSE)
QuartzIndval <- indval(as.matrix(PlantSpecies1), clustQuartz, type = "long")
summary(QuartzIndval)
## cluster indicator_value probability
## Taraxacum.agg. 1 0.6872 0.004
## Urtica.diocia 1 0.3534 0.036
## Festuca.ovina 1 0.3462 0.049
## Potentilla.reptans 1 0.2128 0.044
##
## Sum of probabilities = 112.204
##
## Sum of Indicator Values = 15.2
##
## Sum of Significant Indicator Values = 1.6
##
## Number of Significant Indicators = 4
##
## Significant Indicator Distribution
##
## 1
## 4
gr <- QuartzIndval$maxcls[QuartzIndval$pval<=0.05]
iv <- QuartzIndval$indcls[QuartzIndval$pval<=0.05]
pv <- QuartzIndval$pval[QuartzIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[QuartzIndval$pval<=0.05]
Quartzindvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
Quartzindvalsummary <- Quartzindvalsummary[order(Quartzindvalsummary$group,
-Quartzindvalsummary$indval),]
print(Quartzindvalsummary)
## group indval pvalue freq
## Taraxacum.agg. 1 0.6872017 0.004 3
## Urtica.diocia 1 0.3534110 0.036 1
## Festuca.ovina 1 0.3462254 0.049 15
## Potentilla.reptans 1 0.2128079 0.044 5
summary(indval(as.matrix(PlantSpecies1), clustQuartz, type= "long"))
## cluster indicator_value probability
## Taraxacum.agg. 1 0.6872 0.004
## Urtica.diocia 1 0.3534 0.032
## Festuca.ovina 1 0.3462 0.037
## Potentilla.reptans 1 0.2128 0.044
##
## Sum of probabilities = 112.178
##
## Sum of Indicator Values = 15.2
##
## Sum of Significant Indicator Values = 1.6
##
## Number of Significant Indicators = 4
##
## Significant Indicator Distribution
##
## 1
## 4
print(indval(as.matrix(PlantSpecies1), clustQuartz, type= "long"))
## $relfrq
## 1 5
## Agrostis.spp. 0.2 0.19444444
## Agrostis.canina 0.0 0.02777778
## Alchemilla.mollis 0.0 0.02777778
## Alopercus.pratensis 0.0 0.02777778
## Angelica.sylvestris 0.0 0.05555556
## Anthoxanthum.odoratum 0.0 0.16666667
## Anthyllis.vulneraria 0.2 0.11111111
## Aphanes.arvensis 0.2 0.05555556
## Arrhenatherum.elatius 0.0 0.22222222
## Atrichum.undulatum 0.0 0.05555556
## Avenula.pratensis 0.0 0.02777778
## Bellis.perennis 0.4 0.27777778
## Betula.pubescens 0.0 0.02777778
## Blackstonia.perfoliata 0.0 0.02777778
## Brachythecium.albicans 0.0 0.02777778
## Brachythecium.glareosum 0.0 0.02777778
## Brachythecium.mildeanum 0.2 0.08333333
## Brachythecium.rutabulum 0.2 0.13888889
## Briza.media 0.0 0.08333333
## Bromus.hordeaceus 0.0 0.02777778
## Bryum.c.f..caespiticium 0.0 0.02777778
## Bryum.c.f..pallescens 0.0 0.08333333
## Bryum.capillare 0.0 0.02777778
## Bryum.spp. 0.0 0.08333333
## Calliergonella.cupsidata 0.0 0.41666667
## Calypogeia.arguta 0.2 0.19444444
## Campanula.rotundifolia 0.0 0.02777778
## Carex.distans 0.0 0.05555556
## Carex.flacca 0.2 0.16666667
## Carex.panicea 0.0 0.02777778
## Carlina.vulgaris 0.4 0.22222222
## Centaurea.nigra 0.0 0.05555556
## Centaurium.erythraea 0.0 0.05555556
## Centaurium.littorale 0.0 0.11111111
## Centaurium.pulchellum 0.0 0.02777778
## Cerastium.fontanum 0.0 0.19444444
## Chamaenerion.angustifolium 0.0 0.02777778
## Cirriphyllum.piliferum 0.0 0.02777778
## Cirsium.arvense 0.0 0.08333333
## Cirsium.palustre 0.0 0.05555556
## Crepis.capillaris 0.0 0.05555556
## Cynosurus.cristatus 0.2 0.05555556
## Dactylis.glomerata 0.2 0.13888889
## Dactylorhiza.fuchsii 0.2 0.02777778
## Danthonia.decumbens 0.2 0.00000000
## Daucus.carrota 0.0 0.05555556
## Dicranella.spp. 0.0 0.02777778
## Dicranum.scoparium 0.0 0.13888889
## Epilobium.montanum 0.0 0.08333333
## Equisetum.arvense 0.0 0.08333333
## Equisteum.variegatum 0.0 0.02777778
## Erigeron.acer 0.2 0.02777778
## Euphrasia.agg 0.2 0.27777778
## Festuca.ovina 0.4 0.13888889
## Festuca.rubra 0.2 0.38888889
## Festuca.rubra.agg. 0.0 0.02777778
## Filipendula.ulmaria 0.0 0.08333333
## Fissidens.adianthoides 0.0 0.02777778
## Fissidens.dubius 0.0 0.05555556
## Fissidens.exilis 0.0 0.02777778
## Fragaria.vesca 0.0 0.16666667
## Galium.aparine 0.0 0.02777778
## Galium.arvense 0.0 0.02777778
## Galium.saxatile 0.2 0.00000000
## Galium.verum 0.0 0.11111111
## Geum.urbanum 0.0 0.02777778
## Glechoma.hederacea 0.0 0.02777778
## Helicotrichon.spp. 0.0 0.02777778
## Heracleum.sphondylium 0.2 0.05555556
## Hieracium.spp. 0.0 0.02777778
## Holcus.spp. 0.6 0.50000000
## Holcus.lanatus 0.0 0.33333333
## Holcus.mollis 0.2 0.13888889
## Homalothecium.lutescens 0.2 0.02777778
## Hylocomium.splendens 0.0 0.19444444
## Hypericum.perforatum 0.2 0.13888889
## Hypnum.cupressiforme 0.2 0.25000000
## Hypnum.imponens 0.0 0.02777778
## Hypnum.jutlandicum 0.2 0.05555556
## Hypochaeris.radicata 0.0 0.02777778
## Kindbergia.praelonga 0.2 0.13888889
## Lathyrus.pratensis 0.2 0.05555556
## Leontodon.hispidus 0.4 0.08333333
## Leontodon.saxatilis 0.2 0.00000000
## Leucanthemum.vulgare 0.2 0.36111111
## Linum.catharticum 0.2 0.11111111
## Lolium.perenne 0.0 0.11111111
## Lophocolea.semiteres 0.0 0.02777778
## Lotus.corniculatus 0.2 0.47222222
## Luzula.multiflora 0.0 0.02777778
## Lysimachia.maritima 0.0 0.05555556
## Medicago.lupulina 0.2 0.11111111
## Myosotis.arvensis 0.2 0.11111111
## Ononis.repens 0.4 0.16666667
## Oxalis.acetosella 0.0 0.02777778
## Pastinaca.sativa 0.0 0.02777778
## Pentaglottis.sempervirens 0.0 0.02777778
## Pillosella.officinarum 0.6 0.25000000
## Plantago.coronopus 0.2 0.08333333
## Plantago.lanceolata 0.4 0.30555556
## Pleurozium.schreberi 0.0 0.11111111
## Poa.annua 0.0 0.08333333
## Poa.spp. 0.0 0.02777778
## Polytrichum.commune 0.0 0.02777778
## Polytrichum.commune.agg. 0.0 0.02777778
## Polytrichum.formosum 0.0 0.02777778
## Potentilla.reptans 0.4 0.05555556
## Prunella.vulgaris 0.0 0.13888889
## Pseudoscleropidum.purum 0.2 0.19444444
## Pteridium.aquilinum 0.0 0.08333333
## Ranunculus.acris 0.0 0.02777778
## Ranunculus.repens 0.0 0.08333333
## Reseda.lutea 0.0 0.02777778
## Rhinanthus.minor 0.2 0.00000000
## Rhizomnium.punctatum 0.0 0.02777778
## Rhytidadelphus.squarrosus 0.2 0.33333333
## Rhytidadelphus.triquetris 0.0 0.05555556
## Rubus.fruticosus 0.0 0.05555556
## Sanguisorba.minor.spp.minor 0.0 0.05555556
## Saniona.uncinata 0.0 0.05555556
## Sedum.anglicum 0.0 0.02777778
## Senecio.jacobaea 0.0 0.05555556
## Senecio.vulgaris 0.2 0.00000000
## Sonchus.arvensis 0.0 0.02777778
## Stachys.sylvatica 0.0 0.05555556
## Stellaria.apetala 0.0 0.02777778
## Taraxacum.agg. 0.8 0.19444444
## Thuidium.tamariscinum 0.0 0.08333333
## Thymus.polytrichus 0.2 0.19444444
## Trichostomum.crispulum 0.0 0.16666667
## Trifolium.campestre 0.2 0.16666667
## Trifolium.dubium 0.0 0.05555556
## Trifolium.pratense 0.2 0.08333333
## Trifolium.repens 0.0 0.13888889
## Trisetum.flavescens 0.0 0.11111111
## Tussilago.farfara 0.0 0.08333333
## Urtica.diocia 0.4 0.05555556
## Veronica.officinalis 0.0 0.02777778
## Vicia.sativa 0.0 0.02777778
## Viola.riviniana 0.0 0.02777778
## Weissia.controversa 0.0 0.02777778
## Zygodon.stirtonii 0.2 0.00000000
##
## $relabu
## 1 5
## Agrostis.spp. 0.52830189 0.471698113
## Agrostis.canina 0.00000000 1.000000000
## Alchemilla.mollis 0.00000000 1.000000000
## Alopercus.pratensis 0.00000000 1.000000000
## Angelica.sylvestris 0.00000000 1.000000000
## Anthoxanthum.odoratum 0.00000000 1.000000000
## Anthyllis.vulneraria 0.06445837 0.935541629
## Aphanes.arvensis 0.92957746 0.070422535
## Arrhenatherum.elatius 0.00000000 1.000000000
## Atrichum.undulatum 0.00000000 1.000000000
## Avenula.pratensis 0.00000000 1.000000000
## Bellis.perennis 0.48160535 0.518394649
## Betula.pubescens 0.00000000 1.000000000
## Blackstonia.perfoliata 0.00000000 1.000000000
## Brachythecium.albicans 0.00000000 1.000000000
## Brachythecium.glareosum 0.00000000 1.000000000
## Brachythecium.mildeanum 0.90756303 0.092436975
## Brachythecium.rutabulum 0.50704225 0.492957746
## Briza.media 0.00000000 1.000000000
## Bromus.hordeaceus 0.00000000 1.000000000
## Bryum.c.f..caespiticium 0.00000000 1.000000000
## Bryum.c.f..pallescens 0.00000000 1.000000000
## Bryum.capillare 0.00000000 1.000000000
## Bryum.spp. 0.00000000 1.000000000
## Calliergonella.cupsidata 0.00000000 1.000000000
## Calypogeia.arguta 0.13533835 0.864661654
## Campanula.rotundifolia 0.00000000 1.000000000
## Carex.distans 0.00000000 1.000000000
## Carex.flacca 0.25431711 0.745682889
## Carex.panicea 0.00000000 1.000000000
## Carlina.vulgaris 0.53865337 0.461346633
## Centaurea.nigra 0.00000000 1.000000000
## Centaurium.erythraea 0.00000000 1.000000000
## Centaurium.littorale 0.00000000 1.000000000
## Centaurium.pulchellum 0.00000000 1.000000000
## Cerastium.fontanum 0.00000000 1.000000000
## Chamaenerion.angustifolium 0.00000000 1.000000000
## Cirriphyllum.piliferum 0.00000000 1.000000000
## Cirsium.arvense 0.00000000 1.000000000
## Cirsium.palustre 0.00000000 1.000000000
## Crepis.capillaris 0.00000000 1.000000000
## Cynosurus.cristatus 0.62540717 0.374592834
## Dactylis.glomerata 0.55242967 0.447570332
## Dactylorhiza.fuchsii 0.24657534 0.753424658
## Danthonia.decumbens 1.00000000 0.000000000
## Daucus.carrota 0.00000000 1.000000000
## Dicranella.spp. 0.00000000 1.000000000
## Dicranum.scoparium 0.00000000 1.000000000
## Epilobium.montanum 0.00000000 1.000000000
## Equisetum.arvense 0.00000000 1.000000000
## Equisteum.variegatum 0.00000000 1.000000000
## Erigeron.acer 0.63343109 0.366568915
## Euphrasia.agg 0.19753086 0.802469136
## Festuca.ovina 0.86556360 0.134436401
## Festuca.rubra 0.48828607 0.511713933
## Festuca.rubra.agg. 0.00000000 1.000000000
## Filipendula.ulmaria 0.00000000 1.000000000
## Fissidens.adianthoides 0.00000000 1.000000000
## Fissidens.dubius 0.00000000 1.000000000
## Fissidens.exilis 0.00000000 1.000000000
## Fragaria.vesca 0.00000000 1.000000000
## Galium.aparine 0.00000000 1.000000000
## Galium.arvense 0.00000000 1.000000000
## Galium.saxatile 1.00000000 0.000000000
## Galium.verum 0.00000000 1.000000000
## Geum.urbanum 0.00000000 1.000000000
## Glechoma.hederacea 0.00000000 1.000000000
## Helicotrichon.spp. 0.00000000 1.000000000
## Heracleum.sphondylium 0.44444444 0.555555556
## Hieracium.spp. 0.00000000 1.000000000
## Holcus.spp. 0.60651740 0.393482598
## Holcus.lanatus 0.00000000 1.000000000
## Holcus.mollis 0.03035413 0.969645868
## Homalothecium.lutescens 0.99139415 0.008605852
## Hylocomium.splendens 0.00000000 1.000000000
## Hypericum.perforatum 0.79041916 0.209580838
## Hypnum.cupressiforme 0.39560440 0.604395604
## Hypnum.imponens 0.00000000 1.000000000
## Hypnum.jutlandicum 0.33962264 0.660377358
## Hypochaeris.radicata 0.00000000 1.000000000
## Kindbergia.praelonga 0.26470588 0.735294118
## Lathyrus.pratensis 0.64285714 0.357142857
## Leontodon.hispidus 0.61802575 0.381974249
## Leontodon.saxatilis 1.00000000 0.000000000
## Leucanthemum.vulgare 0.70016207 0.299837925
## Linum.catharticum 0.75524476 0.244755245
## Lolium.perenne 0.00000000 1.000000000
## Lophocolea.semiteres 0.00000000 1.000000000
## Lotus.corniculatus 0.10983489 0.890165111
## Luzula.multiflora 0.00000000 1.000000000
## Lysimachia.maritima 0.00000000 1.000000000
## Medicago.lupulina 0.17475728 0.825242718
## Myosotis.arvensis 0.81203008 0.187969925
## Ononis.repens 0.07916438 0.920835624
## Oxalis.acetosella 0.00000000 1.000000000
## Pastinaca.sativa 0.00000000 1.000000000
## Pentaglottis.sempervirens 0.00000000 1.000000000
## Pillosella.officinarum 0.58431019 0.415689811
## Plantago.coronopus 0.45328032 0.546719682
## Plantago.lanceolata 0.37148218 0.628517824
## Pleurozium.schreberi 0.00000000 1.000000000
## Poa.annua 0.00000000 1.000000000
## Poa.spp. 0.00000000 1.000000000
## Polytrichum.commune 0.00000000 1.000000000
## Polytrichum.commune.agg. 0.00000000 1.000000000
## Polytrichum.formosum 0.00000000 1.000000000
## Potentilla.reptans 0.53201970 0.467980296
## Prunella.vulgaris 0.00000000 1.000000000
## Pseudoscleropidum.purum 0.25837321 0.741626794
## Pteridium.aquilinum 0.00000000 1.000000000
## Ranunculus.acris 0.00000000 1.000000000
## Ranunculus.repens 0.00000000 1.000000000
## Reseda.lutea 0.00000000 1.000000000
## Rhinanthus.minor 1.00000000 0.000000000
## Rhizomnium.punctatum 0.00000000 1.000000000
## Rhytidadelphus.squarrosus 0.47368421 0.526315789
## Rhytidadelphus.triquetris 0.00000000 1.000000000
## Rubus.fruticosus 0.00000000 1.000000000
## Sanguisorba.minor.spp.minor 0.00000000 1.000000000
## Saniona.uncinata 0.00000000 1.000000000
## Sedum.anglicum 0.00000000 1.000000000
## Senecio.jacobaea 0.00000000 1.000000000
## Senecio.vulgaris 1.00000000 0.000000000
## Sonchus.arvensis 0.00000000 1.000000000
## Stachys.sylvatica 0.00000000 1.000000000
## Stellaria.apetala 0.00000000 1.000000000
## Taraxacum.agg. 0.85900217 0.140997831
## Thuidium.tamariscinum 0.00000000 1.000000000
## Thymus.polytrichus 0.04877105 0.951228953
## Trichostomum.crispulum 0.00000000 1.000000000
## Trifolium.campestre 0.34573830 0.654261705
## Trifolium.dubium 0.00000000 1.000000000
## Trifolium.pratense 0.20454545 0.795454545
## Trifolium.repens 0.00000000 1.000000000
## Trisetum.flavescens 0.00000000 1.000000000
## Tussilago.farfara 0.00000000 1.000000000
## Urtica.diocia 0.88352745 0.116472546
## Veronica.officinalis 0.00000000 1.000000000
## Vicia.sativa 0.00000000 1.000000000
## Viola.riviniana 0.00000000 1.000000000
## Weissia.controversa 0.00000000 1.000000000
## Zygodon.stirtonii 1.00000000 0.000000000
##
## $indval
## 1 5
## Agrostis.spp. 0.105660377 0.0917190776
## Agrostis.canina 0.000000000 0.0277777778
## Alchemilla.mollis 0.000000000 0.0277777778
## Alopercus.pratensis 0.000000000 0.0277777778
## Angelica.sylvestris 0.000000000 0.0555555556
## Anthoxanthum.odoratum 0.000000000 0.1666666667
## Anthyllis.vulneraria 0.012891674 0.1039490699
## Aphanes.arvensis 0.185915493 0.0039123631
## Arrhenatherum.elatius 0.000000000 0.2222222222
## Atrichum.undulatum 0.000000000 0.0555555556
## Avenula.pratensis 0.000000000 0.0277777778
## Bellis.perennis 0.192642140 0.1439985136
## Betula.pubescens 0.000000000 0.0277777778
## Blackstonia.perfoliata 0.000000000 0.0277777778
## Brachythecium.albicans 0.000000000 0.0277777778
## Brachythecium.glareosum 0.000000000 0.0277777778
## Brachythecium.mildeanum 0.181512605 0.0077030812
## Brachythecium.rutabulum 0.101408451 0.0684663537
## Briza.media 0.000000000 0.0833333333
## Bromus.hordeaceus 0.000000000 0.0277777778
## Bryum.c.f..caespiticium 0.000000000 0.0277777778
## Bryum.c.f..pallescens 0.000000000 0.0833333333
## Bryum.capillare 0.000000000 0.0277777778
## Bryum.spp. 0.000000000 0.0833333333
## Calliergonella.cupsidata 0.000000000 0.4166666667
## Calypogeia.arguta 0.027067669 0.1681286550
## Campanula.rotundifolia 0.000000000 0.0277777778
## Carex.distans 0.000000000 0.0555555556
## Carex.flacca 0.050863422 0.1242804814
## Carex.panicea 0.000000000 0.0277777778
## Carlina.vulgaris 0.215461347 0.1025214741
## Centaurea.nigra 0.000000000 0.0555555556
## Centaurium.erythraea 0.000000000 0.0555555556
## Centaurium.littorale 0.000000000 0.1111111111
## Centaurium.pulchellum 0.000000000 0.0277777778
## Cerastium.fontanum 0.000000000 0.1944444444
## Chamaenerion.angustifolium 0.000000000 0.0277777778
## Cirriphyllum.piliferum 0.000000000 0.0277777778
## Cirsium.arvense 0.000000000 0.0833333333
## Cirsium.palustre 0.000000000 0.0555555556
## Crepis.capillaris 0.000000000 0.0555555556
## Cynosurus.cristatus 0.125081433 0.0208107130
## Dactylis.glomerata 0.110485934 0.0621625462
## Dactylorhiza.fuchsii 0.049315068 0.0209284627
## Danthonia.decumbens 0.200000000 0.0000000000
## Daucus.carrota 0.000000000 0.0555555556
## Dicranella.spp. 0.000000000 0.0277777778
## Dicranum.scoparium 0.000000000 0.1388888889
## Epilobium.montanum 0.000000000 0.0833333333
## Equisetum.arvense 0.000000000 0.0833333333
## Equisteum.variegatum 0.000000000 0.0277777778
## Erigeron.acer 0.126686217 0.0101824699
## Euphrasia.agg 0.039506173 0.2229080933
## Festuca.ovina 0.346225440 0.0186717224
## Festuca.rubra 0.097657213 0.1989998630
## Festuca.rubra.agg. 0.000000000 0.0277777778
## Filipendula.ulmaria 0.000000000 0.0833333333
## Fissidens.adianthoides 0.000000000 0.0277777778
## Fissidens.dubius 0.000000000 0.0555555556
## Fissidens.exilis 0.000000000 0.0277777778
## Fragaria.vesca 0.000000000 0.1666666667
## Galium.aparine 0.000000000 0.0277777778
## Galium.arvense 0.000000000 0.0277777778
## Galium.saxatile 0.200000000 0.0000000000
## Galium.verum 0.000000000 0.1111111111
## Geum.urbanum 0.000000000 0.0277777778
## Glechoma.hederacea 0.000000000 0.0277777778
## Helicotrichon.spp. 0.000000000 0.0277777778
## Heracleum.sphondylium 0.088888889 0.0308641975
## Hieracium.spp. 0.000000000 0.0277777778
## Holcus.spp. 0.363910441 0.1967412990
## Holcus.lanatus 0.000000000 0.3333333333
## Holcus.mollis 0.006070826 0.1346730373
## Homalothecium.lutescens 0.198278830 0.0002390514
## Hylocomium.splendens 0.000000000 0.1944444444
## Hypericum.perforatum 0.158083832 0.0291084498
## Hypnum.cupressiforme 0.079120879 0.1510989011
## Hypnum.imponens 0.000000000 0.0277777778
## Hypnum.jutlandicum 0.067924528 0.0366876310
## Hypochaeris.radicata 0.000000000 0.0277777778
## Kindbergia.praelonga 0.052941176 0.1021241830
## Lathyrus.pratensis 0.128571429 0.0198412698
## Leontodon.hispidus 0.247210300 0.0318311874
## Leontodon.saxatilis 0.200000000 0.0000000000
## Leucanthemum.vulgare 0.140032415 0.1082748064
## Linum.catharticum 0.151048951 0.0271950272
## Lolium.perenne 0.000000000 0.1111111111
## Lophocolea.semiteres 0.000000000 0.0277777778
## Lotus.corniculatus 0.021966978 0.4203557470
## Luzula.multiflora 0.000000000 0.0277777778
## Lysimachia.maritima 0.000000000 0.0555555556
## Medicago.lupulina 0.034951456 0.0916936354
## Myosotis.arvensis 0.162406015 0.0208855472
## Ononis.repens 0.031665750 0.1534726040
## Oxalis.acetosella 0.000000000 0.0277777778
## Pastinaca.sativa 0.000000000 0.0277777778
## Pentaglottis.sempervirens 0.000000000 0.0277777778
## Pillosella.officinarum 0.350586114 0.1039224527
## Plantago.coronopus 0.090656064 0.0455599735
## Plantago.lanceolata 0.148592871 0.1920471128
## Pleurozium.schreberi 0.000000000 0.1111111111
## Poa.annua 0.000000000 0.0833333333
## Poa.spp. 0.000000000 0.0277777778
## Polytrichum.commune 0.000000000 0.0277777778
## Polytrichum.commune.agg. 0.000000000 0.0277777778
## Polytrichum.formosum 0.000000000 0.0277777778
## Potentilla.reptans 0.212807882 0.0259989053
## Prunella.vulgaris 0.000000000 0.1388888889
## Pseudoscleropidum.purum 0.051674641 0.1442052100
## Pteridium.aquilinum 0.000000000 0.0833333333
## Ranunculus.acris 0.000000000 0.0277777778
## Ranunculus.repens 0.000000000 0.0833333333
## Reseda.lutea 0.000000000 0.0277777778
## Rhinanthus.minor 0.200000000 0.0000000000
## Rhizomnium.punctatum 0.000000000 0.0277777778
## Rhytidadelphus.squarrosus 0.094736842 0.1754385965
## Rhytidadelphus.triquetris 0.000000000 0.0555555556
## Rubus.fruticosus 0.000000000 0.0555555556
## Sanguisorba.minor.spp.minor 0.000000000 0.0555555556
## Saniona.uncinata 0.000000000 0.0555555556
## Sedum.anglicum 0.000000000 0.0277777778
## Senecio.jacobaea 0.000000000 0.0555555556
## Senecio.vulgaris 0.200000000 0.0000000000
## Sonchus.arvensis 0.000000000 0.0277777778
## Stachys.sylvatica 0.000000000 0.0555555556
## Stellaria.apetala 0.000000000 0.0277777778
## Taraxacum.agg. 0.687201735 0.0274162449
## Thuidium.tamariscinum 0.000000000 0.0833333333
## Thymus.polytrichus 0.009754209 0.1849611853
## Trichostomum.crispulum 0.000000000 0.1666666667
## Trifolium.campestre 0.069147659 0.1090436174
## Trifolium.dubium 0.000000000 0.0555555556
## Trifolium.pratense 0.040909091 0.0662878788
## Trifolium.repens 0.000000000 0.1388888889
## Trisetum.flavescens 0.000000000 0.1111111111
## Tussilago.farfara 0.000000000 0.0833333333
## Urtica.diocia 0.353410982 0.0064706970
## Veronica.officinalis 0.000000000 0.0277777778
## Vicia.sativa 0.000000000 0.0277777778
## Viola.riviniana 0.000000000 0.0277777778
## Weissia.controversa 0.000000000 0.0277777778
## Zygodon.stirtonii 0.200000000 0.0000000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 2
## Alchemilla.mollis Alopercus.pratensis
## 2 2
## Angelica.sylvestris Anthoxanthum.odoratum
## 2 2
## Anthyllis.vulneraria Aphanes.arvensis
## 2 1
## Arrhenatherum.elatius Atrichum.undulatum
## 2 2
## Avenula.pratensis Bellis.perennis
## 2 1
## Betula.pubescens Blackstonia.perfoliata
## 2 2
## Brachythecium.albicans Brachythecium.glareosum
## 2 2
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 2 2
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 2 2
## Bryum.capillare Bryum.spp.
## 2 2
## Calliergonella.cupsidata Calypogeia.arguta
## 2 2
## Campanula.rotundifolia Carex.distans
## 2 2
## Carex.flacca Carex.panicea
## 2 2
## Carlina.vulgaris Centaurea.nigra
## 1 2
## Centaurium.erythraea Centaurium.littorale
## 2 2
## Centaurium.pulchellum Cerastium.fontanum
## 2 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 2 2
## Cirsium.arvense Cirsium.palustre
## 2 2
## Crepis.capillaris Cynosurus.cristatus
## 2 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 2
## Dicranella.spp. Dicranum.scoparium
## 2 2
## Epilobium.montanum Equisetum.arvense
## 2 2
## Equisteum.variegatum Erigeron.acer
## 2 1
## Euphrasia.agg Festuca.ovina
## 2 1
## Festuca.rubra Festuca.rubra.agg.
## 2 2
## Filipendula.ulmaria Fissidens.adianthoides
## 2 2
## Fissidens.dubius Fissidens.exilis
## 2 2
## Fragaria.vesca Galium.aparine
## 2 2
## Galium.arvense Galium.saxatile
## 2 1
## Galium.verum Geum.urbanum
## 2 2
## Glechoma.hederacea Helicotrichon.spp.
## 2 2
## Heracleum.sphondylium Hieracium.spp.
## 1 2
## Holcus.spp. Holcus.lanatus
## 1 2
## Holcus.mollis Homalothecium.lutescens
## 2 1
## Hylocomium.splendens Hypericum.perforatum
## 2 1
## Hypnum.cupressiforme Hypnum.imponens
## 2 2
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 2
## Kindbergia.praelonga Lathyrus.pratensis
## 2 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 2 2
## Lotus.corniculatus Luzula.multiflora
## 2 2
## Lysimachia.maritima Medicago.lupulina
## 2 2
## Myosotis.arvensis Ononis.repens
## 1 2
## Oxalis.acetosella Pastinaca.sativa
## 2 2
## Pentaglottis.sempervirens Pillosella.officinarum
## 2 1
## Plantago.coronopus Plantago.lanceolata
## 1 2
## Pleurozium.schreberi Poa.annua
## 2 2
## Poa.spp. Polytrichum.commune
## 2 2
## Polytrichum.commune.agg. Polytrichum.formosum
## 2 2
## Potentilla.reptans Prunella.vulgaris
## 1 2
## Pseudoscleropidum.purum Pteridium.aquilinum
## 2 2
## Ranunculus.acris Ranunculus.repens
## 2 2
## Reseda.lutea Rhinanthus.minor
## 2 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 2 2
## Rhytidadelphus.triquetris Rubus.fruticosus
## 2 2
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 2 2
## Sedum.anglicum Senecio.jacobaea
## 2 2
## Senecio.vulgaris Sonchus.arvensis
## 1 2
## Stachys.sylvatica Stellaria.apetala
## 2 2
## Taraxacum.agg. Thuidium.tamariscinum
## 1 2
## Thymus.polytrichus Trichostomum.crispulum
## 2 2
## Trifolium.campestre Trifolium.dubium
## 2 2
## Trifolium.pratense Trifolium.repens
## 2 2
## Trisetum.flavescens Tussilago.farfara
## 2 2
## Urtica.diocia Veronica.officinalis
## 1 2
## Vicia.sativa Viola.riviniana
## 2 2
## Weissia.controversa Zygodon.stirtonii
## 2 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.10566038 0.02777778
## Alchemilla.mollis Alopercus.pratensis
## 0.02777778 0.02777778
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.05555556 0.16666667
## Anthyllis.vulneraria Aphanes.arvensis
## 0.10394907 0.18591549
## Arrhenatherum.elatius Atrichum.undulatum
## 0.22222222 0.05555556
## Avenula.pratensis Bellis.perennis
## 0.02777778 0.19264214
## Betula.pubescens Blackstonia.perfoliata
## 0.02777778 0.02777778
## Brachythecium.albicans Brachythecium.glareosum
## 0.02777778 0.02777778
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.18151261 0.10140845
## Briza.media Bromus.hordeaceus
## 0.08333333 0.02777778
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.02777778 0.08333333
## Bryum.capillare Bryum.spp.
## 0.02777778 0.08333333
## Calliergonella.cupsidata Calypogeia.arguta
## 0.41666667 0.16812865
## Campanula.rotundifolia Carex.distans
## 0.02777778 0.05555556
## Carex.flacca Carex.panicea
## 0.12428048 0.02777778
## Carlina.vulgaris Centaurea.nigra
## 0.21546135 0.05555556
## Centaurium.erythraea Centaurium.littorale
## 0.05555556 0.11111111
## Centaurium.pulchellum Cerastium.fontanum
## 0.02777778 0.19444444
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.02777778 0.02777778
## Cirsium.arvense Cirsium.palustre
## 0.08333333 0.05555556
## Crepis.capillaris Cynosurus.cristatus
## 0.05555556 0.12508143
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.11048593 0.04931507
## Danthonia.decumbens Daucus.carrota
## 0.20000000 0.05555556
## Dicranella.spp. Dicranum.scoparium
## 0.02777778 0.13888889
## Epilobium.montanum Equisetum.arvense
## 0.08333333 0.08333333
## Equisteum.variegatum Erigeron.acer
## 0.02777778 0.12668622
## Euphrasia.agg Festuca.ovina
## 0.22290809 0.34622544
## Festuca.rubra Festuca.rubra.agg.
## 0.19899986 0.02777778
## Filipendula.ulmaria Fissidens.adianthoides
## 0.08333333 0.02777778
## Fissidens.dubius Fissidens.exilis
## 0.05555556 0.02777778
## Fragaria.vesca Galium.aparine
## 0.16666667 0.02777778
## Galium.arvense Galium.saxatile
## 0.02777778 0.20000000
## Galium.verum Geum.urbanum
## 0.11111111 0.02777778
## Glechoma.hederacea Helicotrichon.spp.
## 0.02777778 0.02777778
## Heracleum.sphondylium Hieracium.spp.
## 0.08888889 0.02777778
## Holcus.spp. Holcus.lanatus
## 0.36391044 0.33333333
## Holcus.mollis Homalothecium.lutescens
## 0.13467304 0.19827883
## Hylocomium.splendens Hypericum.perforatum
## 0.19444444 0.15808383
## Hypnum.cupressiforme Hypnum.imponens
## 0.15109890 0.02777778
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.06792453 0.02777778
## Kindbergia.praelonga Lathyrus.pratensis
## 0.10212418 0.12857143
## Leontodon.hispidus Leontodon.saxatilis
## 0.24721030 0.20000000
## Leucanthemum.vulgare Linum.catharticum
## 0.14003241 0.15104895
## Lolium.perenne Lophocolea.semiteres
## 0.11111111 0.02777778
## Lotus.corniculatus Luzula.multiflora
## 0.42035575 0.02777778
## Lysimachia.maritima Medicago.lupulina
## 0.05555556 0.09169364
## Myosotis.arvensis Ononis.repens
## 0.16240602 0.15347260
## Oxalis.acetosella Pastinaca.sativa
## 0.02777778 0.02777778
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.02777778 0.35058611
## Plantago.coronopus Plantago.lanceolata
## 0.09065606 0.19204711
## Pleurozium.schreberi Poa.annua
## 0.11111111 0.08333333
## Poa.spp. Polytrichum.commune
## 0.02777778 0.02777778
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.02777778 0.02777778
## Potentilla.reptans Prunella.vulgaris
## 0.21280788 0.13888889
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.14420521 0.08333333
## Ranunculus.acris Ranunculus.repens
## 0.02777778 0.08333333
## Reseda.lutea Rhinanthus.minor
## 0.02777778 0.20000000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.02777778 0.17543860
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.05555556 0.05555556
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.05555556 0.05555556
## Sedum.anglicum Senecio.jacobaea
## 0.02777778 0.05555556
## Senecio.vulgaris Sonchus.arvensis
## 0.20000000 0.02777778
## Stachys.sylvatica Stellaria.apetala
## 0.05555556 0.02777778
## Taraxacum.agg. Thuidium.tamariscinum
## 0.68720174 0.08333333
## Thymus.polytrichus Trichostomum.crispulum
## 0.18496119 0.16666667
## Trifolium.campestre Trifolium.dubium
## 0.10904362 0.05555556
## Trifolium.pratense Trifolium.repens
## 0.06628788 0.13888889
## Trisetum.flavescens Tussilago.farfara
## 0.11111111 0.08333333
## Urtica.diocia Veronica.officinalis
## 0.35341098 0.02777778
## Vicia.sativa Viola.riviniana
## 0.02777778 0.02777778
## Weissia.controversa Zygodon.stirtonii
## 0.02777778 0.20000000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1.000 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 0.540
## Anthyllis.vulneraria Aphanes.arvensis
## 0.930 0.137
## Arrhenatherum.elatius Atrichum.undulatum
## 0.446 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.732
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.137 1.000
## Briza.media Bromus.hordeaceus
## 0.829 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 0.907
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.220 0.600
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.906 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.508 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 0.914
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.560
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 0.240
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.847 1.000
## Danthonia.decumbens Daucus.carrota
## 0.118 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 0.683
## Epilobium.montanum Equisetum.arvense
## 0.903 0.904
## Equisteum.variegatum Erigeron.acer
## 1.000 0.252
## Euphrasia.agg Festuca.ovina
## 0.629 0.044
## Festuca.rubra Festuca.rubra.agg.
## 0.940 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 0.594 1.000
## Galium.arvense Galium.saxatile
## 1.000 0.117
## Galium.verum Geum.urbanum
## 0.805 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 0.322 1.000
## Holcus.spp. Holcus.lanatus
## 0.489 0.264
## Holcus.mollis Homalothecium.lutescens
## 0.752 0.122
## Hylocomium.splendens Hypericum.perforatum
## 0.563 0.663
## Hypnum.cupressiforme Hypnum.imponens
## 0.783 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 0.335
## Leontodon.hispidus Leontodon.saxatilis
## 0.082 0.108
## Leucanthemum.vulgare Linum.catharticum
## 0.979 0.245
## Lolium.perenne Lophocolea.semiteres
## 0.722 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.248 1.000
## Lysimachia.maritima Medicago.lupulina
## 0.880 0.914
## Myosotis.arvensis Ononis.repens
## 0.184 0.910
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.125
## Plantago.coronopus Plantago.lanceolata
## 0.919 0.849
## Pleurozium.schreberi Poa.annua
## 0.912 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 0.042 0.706
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.716 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 0.890
## Reseda.lutea Rhinanthus.minor
## 1.000 0.130
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.924
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 0.126 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.003 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.627 0.582
## Trifolium.campestre Trifolium.dubium
## 0.946 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 0.743
## Trisetum.flavescens Tussilago.farfara
## 0.700 1.000
## Urtica.diocia Veronica.officinalis
## 0.041 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 0.131
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#From the Quartzindvalsummary and from the automatic summary, Taraxacum agg. is the #reported indicator species with the highest indval score, of 0.687 and the lowest p value, #of 0.003. This is the indicator species for quartz on the six study sites.
#Now to do the same for calcite…
clustCalcite <-cut(PlantChemistry1$Calcite, 5, labels=FALSE)
summary(indval(as.matrix(PlantSpecies1), clustCalcite))
## cluster indicator_value probability
## Rhytidadelphus.squarrosus 1 0.3896 0.021
## Agrostis.spp. 1 0.3810 0.004
## Calypogeia.arguta 1 0.3810 0.003
## Hylocomium.splendens 1 0.3333 0.010
## Arrhenatherum.elatius 1 0.3280 0.016
## Anthoxanthum.odoratum 1 0.2857 0.028
## Fragaria.vesca 1 0.2857 0.021
## Holcus.mollis 1 0.2857 0.018
## Kindbergia.praelonga 1 0.2857 0.012
## Dicranum.scoparium 1 0.2381 0.046
## Taraxacum.agg. 2 0.4801 0.001
## Pillosella.officinarum 2 0.4628 0.006
## Carlina.vulgaris 2 0.4200 0.001
## Festuca.ovina 2 0.2635 0.037
## Leontodon.hispidus 2 0.2500 0.021
##
## Sum of probabilities = 80.781
##
## Sum of Indicator Values = 17.21
##
## Sum of Significant Indicator Values = 5.07
##
## Number of Significant Indicators = 15
##
## Significant Indicator Distribution
##
## 1 2
## 10 5
CalciteIndval <- indval(PlantSpecies1, clustCalcite, type= "long")
gr <- CalciteIndval$maxcls[CalciteIndval$pval<=0.05]
iv <- CalciteIndval$indcls[CalciteIndval$pval<=0.05]
pv <- CalciteIndval$pval[CalciteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[CalciteIndval$pval<=0.05]
CalciteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
CalciteIndvalsummary <- CalciteIndvalsummary[order(CalciteIndvalsummary$group,
-CalciteIndvalsummary$indval),]
print(CalciteIndvalsummary)
## group indval pvalue freq
## Rhytidadelphus.squarrosus 1 0.3896444 0.025 2
## Agrostis.spp. 1 0.3809524 0.001 1
## Calypogeia.arguta 1 0.3809524 0.005 1
## Hylocomium.splendens 1 0.3333333 0.004 6
## Arrhenatherum.elatius 1 0.3280343 0.018 2
## Anthoxanthum.odoratum 1 0.2857143 0.025 5
## Fragaria.vesca 1 0.2857143 0.019 1
## Holcus.mollis 1 0.2857143 0.016 2
## Kindbergia.praelonga 1 0.2857143 0.022 3
## Dicranum.scoparium 1 0.2380952 0.039 3
## Taraxacum.agg. 2 0.4801193 0.002 3
## Pillosella.officinarum 2 0.4628049 0.007 4
## Carlina.vulgaris 2 0.4200000 0.003 2
## Festuca.ovina 2 0.2635214 0.040 15
## Leontodon.hispidus 2 0.2500000 0.027 1
print(indval(as.matrix(PlantSpecies1), clustCalcite))
## $relfrq
## 1 5
## Agrostis.spp. 0.38095238 0.00
## Agrostis.canina 0.04761905 0.00
## Alchemilla.mollis 0.04761905 0.00
## Alopercus.pratensis 0.00000000 0.05
## Angelica.sylvestris 0.09523810 0.00
## Anthoxanthum.odoratum 0.28571429 0.00
## Anthyllis.vulneraria 0.09523810 0.15
## Aphanes.arvensis 0.09523810 0.05
## Arrhenatherum.elatius 0.33333333 0.05
## Atrichum.undulatum 0.09523810 0.00
## Avenula.pratensis 0.00000000 0.05
## Bellis.perennis 0.19047619 0.40
## Betula.pubescens 0.04761905 0.00
## Blackstonia.perfoliata 0.00000000 0.05
## Brachythecium.albicans 0.00000000 0.05
## Brachythecium.glareosum 0.04761905 0.00
## Brachythecium.mildeanum 0.19047619 0.00
## Brachythecium.rutabulum 0.23809524 0.05
## Briza.media 0.00000000 0.15
## Bromus.hordeaceus 0.04761905 0.00
## Bryum.c.f..caespiticium 0.04761905 0.00
## Bryum.c.f..pallescens 0.04761905 0.10
## Bryum.capillare 0.04761905 0.00
## Bryum.spp. 0.09523810 0.05
## Calliergonella.cupsidata 0.47619048 0.25
## Calypogeia.arguta 0.38095238 0.00
## Campanula.rotundifolia 0.04761905 0.00
## Carex.distans 0.04761905 0.05
## Carex.flacca 0.14285714 0.20
## Carex.panicea 0.04761905 0.00
## Carlina.vulgaris 0.04761905 0.45
## Centaurea.nigra 0.04761905 0.05
## Centaurium.erythraea 0.00000000 0.10
## Centaurium.littorale 0.09523810 0.10
## Centaurium.pulchellum 0.04761905 0.00
## Cerastium.fontanum 0.14285714 0.20
## Chamaenerion.angustifolium 0.04761905 0.00
## Cirriphyllum.piliferum 0.04761905 0.00
## Cirsium.arvense 0.14285714 0.00
## Cirsium.palustre 0.09523810 0.00
## Crepis.capillaris 0.09523810 0.00
## Cynosurus.cristatus 0.09523810 0.05
## Dactylis.glomerata 0.23809524 0.05
## Dactylorhiza.fuchsii 0.09523810 0.00
## Danthonia.decumbens 0.04761905 0.00
## Daucus.carrota 0.04761905 0.05
## Dicranella.spp. 0.00000000 0.05
## Dicranum.scoparium 0.23809524 0.00
## Epilobium.montanum 0.14285714 0.00
## Equisetum.arvense 0.14285714 0.00
## Equisteum.variegatum 0.04761905 0.00
## Erigeron.acer 0.00000000 0.10
## Euphrasia.agg 0.19047619 0.35
## Festuca.ovina 0.04761905 0.30
## Festuca.rubra 0.23809524 0.50
## Festuca.rubra.agg. 0.04761905 0.00
## Filipendula.ulmaria 0.14285714 0.00
## Fissidens.adianthoides 0.04761905 0.00
## Fissidens.dubius 0.04761905 0.05
## Fissidens.exilis 0.00000000 0.05
## Fragaria.vesca 0.28571429 0.00
## Galium.aparine 0.00000000 0.05
## Galium.arvense 0.04761905 0.00
## Galium.saxatile 0.00000000 0.05
## Galium.verum 0.04761905 0.15
## Geum.urbanum 0.04761905 0.00
## Glechoma.hederacea 0.04761905 0.00
## Helicotrichon.spp. 0.04761905 0.00
## Heracleum.sphondylium 0.09523810 0.05
## Hieracium.spp. 0.00000000 0.05
## Holcus.spp. 0.33333333 0.70
## Holcus.lanatus 0.28571429 0.30
## Holcus.mollis 0.28571429 0.00
## Homalothecium.lutescens 0.00000000 0.10
## Hylocomium.splendens 0.33333333 0.00
## Hypericum.perforatum 0.23809524 0.05
## Hypnum.cupressiforme 0.33333333 0.15
## Hypnum.imponens 0.04761905 0.00
## Hypnum.jutlandicum 0.14285714 0.00
## Hypochaeris.radicata 0.00000000 0.05
## Kindbergia.praelonga 0.28571429 0.00
## Lathyrus.pratensis 0.14285714 0.00
## Leontodon.hispidus 0.00000000 0.25
## Leontodon.saxatilis 0.00000000 0.05
## Leucanthemum.vulgare 0.33333333 0.35
## Linum.catharticum 0.04761905 0.20
## Lolium.perenne 0.14285714 0.05
## Lophocolea.semiteres 0.04761905 0.00
## Lotus.corniculatus 0.33333333 0.55
## Luzula.multiflora 0.04761905 0.00
## Lysimachia.maritima 0.04761905 0.05
## Medicago.lupulina 0.04761905 0.20
## Myosotis.arvensis 0.04761905 0.20
## Ononis.repens 0.19047619 0.20
## Oxalis.acetosella 0.04761905 0.00
## Pastinaca.sativa 0.00000000 0.05
## Pentaglottis.sempervirens 0.00000000 0.05
## Pillosella.officinarum 0.04761905 0.55
## Plantago.coronopus 0.04761905 0.15
## Plantago.lanceolata 0.28571429 0.35
## Pleurozium.schreberi 0.19047619 0.00
## Poa.annua 0.09523810 0.05
## Poa.spp. 0.04761905 0.00
## Polytrichum.commune 0.04761905 0.00
## Polytrichum.commune.agg. 0.04761905 0.00
## Polytrichum.formosum 0.04761905 0.00
## Potentilla.reptans 0.09523810 0.10
## Prunella.vulgaris 0.14285714 0.10
## Pseudoscleropidum.purum 0.28571429 0.10
## Pteridium.aquilinum 0.14285714 0.00
## Ranunculus.acris 0.04761905 0.00
## Ranunculus.repens 0.09523810 0.05
## Reseda.lutea 0.00000000 0.05
## Rhinanthus.minor 0.04761905 0.00
## Rhizomnium.punctatum 0.04761905 0.00
## Rhytidadelphus.squarrosus 0.47619048 0.15
## Rhytidadelphus.triquetris 0.09523810 0.00
## Rubus.fruticosus 0.09523810 0.00
## Sanguisorba.minor.spp.minor 0.00000000 0.10
## Saniona.uncinata 0.09523810 0.00
## Sedum.anglicum 0.00000000 0.05
## Senecio.jacobaea 0.09523810 0.00
## Senecio.vulgaris 0.00000000 0.05
## Sonchus.arvensis 0.04761905 0.00
## Stachys.sylvatica 0.09523810 0.00
## Stellaria.apetala 0.04761905 0.00
## Taraxacum.agg. 0.04761905 0.50
## Thuidium.tamariscinum 0.14285714 0.00
## Thymus.polytrichus 0.09523810 0.30
## Trichostomum.crispulum 0.09523810 0.20
## Trifolium.campestre 0.09523810 0.25
## Trifolium.dubium 0.00000000 0.10
## Trifolium.pratense 0.09523810 0.10
## Trifolium.repens 0.09523810 0.15
## Trisetum.flavescens 0.04761905 0.15
## Tussilago.farfara 0.09523810 0.05
## Urtica.diocia 0.09523810 0.10
## Veronica.officinalis 0.04761905 0.00
## Vicia.sativa 0.04761905 0.00
## Viola.riviniana 0.04761905 0.00
## Weissia.controversa 0.04761905 0.00
## Zygodon.stirtonii 0.00000000 0.05
##
## $relabu
## 1 5
## Agrostis.spp. 1.000000000 0.00000000
## Agrostis.canina 1.000000000 0.00000000
## Alchemilla.mollis 1.000000000 0.00000000
## Alopercus.pratensis 0.000000000 1.00000000
## Angelica.sylvestris 1.000000000 0.00000000
## Anthoxanthum.odoratum 1.000000000 0.00000000
## Anthyllis.vulneraria 0.602115541 0.39788446
## Aphanes.arvensis 0.695652174 0.30434783
## Arrhenatherum.elatius 0.984102952 0.01589705
## Atrichum.undulatum 1.000000000 0.00000000
## Avenula.pratensis 0.000000000 1.00000000
## Bellis.perennis 0.360110803 0.63988920
## Betula.pubescens 1.000000000 0.00000000
## Blackstonia.perfoliata 0.000000000 1.00000000
## Brachythecium.albicans 0.000000000 1.00000000
## Brachythecium.glareosum 1.000000000 0.00000000
## Brachythecium.mildeanum 1.000000000 0.00000000
## Brachythecium.rutabulum 0.613496933 0.38650307
## Briza.media 0.000000000 1.00000000
## Bromus.hordeaceus 1.000000000 0.00000000
## Bryum.c.f..caespiticium 1.000000000 0.00000000
## Bryum.c.f..pallescens 0.079681275 0.92031873
## Bryum.capillare 1.000000000 0.00000000
## Bryum.spp. 0.769230769 0.23076923
## Calliergonella.cupsidata 0.667031165 0.33296884
## Calypogeia.arguta 1.000000000 0.00000000
## Campanula.rotundifolia 1.000000000 0.00000000
## Carex.distans 0.682862771 0.31713723
## Carex.flacca 0.642133860 0.35786614
## Carex.panicea 1.000000000 0.00000000
## Carlina.vulgaris 0.066666667 0.93333333
## Centaurea.nigra 0.655737705 0.34426230
## Centaurium.erythraea 0.000000000 1.00000000
## Centaurium.littorale 0.559440559 0.44055944
## Centaurium.pulchellum 1.000000000 0.00000000
## Cerastium.fontanum 0.603773585 0.39622642
## Chamaenerion.angustifolium 1.000000000 0.00000000
## Cirriphyllum.piliferum 1.000000000 0.00000000
## Cirsium.arvense 1.000000000 0.00000000
## Cirsium.palustre 1.000000000 0.00000000
## Crepis.capillaris 1.000000000 0.00000000
## Cynosurus.cristatus 0.816326531 0.18367347
## Dactylis.glomerata 0.872727273 0.12727273
## Dactylorhiza.fuchsii 1.000000000 0.00000000
## Danthonia.decumbens 1.000000000 0.00000000
## Daucus.carrota 0.322580645 0.67741935
## Dicranella.spp. 0.000000000 1.00000000
## Dicranum.scoparium 1.000000000 0.00000000
## Epilobium.montanum 1.000000000 0.00000000
## Equisetum.arvense 1.000000000 0.00000000
## Equisteum.variegatum 1.000000000 0.00000000
## Erigeron.acer 0.000000000 1.00000000
## Euphrasia.agg 0.086956522 0.91304348
## Festuca.ovina 0.121595331 0.87840467
## Festuca.rubra 0.368889462 0.63111054
## Festuca.rubra.agg. 1.000000000 0.00000000
## Filipendula.ulmaria 1.000000000 0.00000000
## Fissidens.adianthoides 1.000000000 0.00000000
## Fissidens.dubius 0.322580645 0.67741935
## Fissidens.exilis 0.000000000 1.00000000
## Fragaria.vesca 1.000000000 0.00000000
## Galium.aparine 0.000000000 1.00000000
## Galium.arvense 1.000000000 0.00000000
## Galium.saxatile 0.000000000 1.00000000
## Galium.verum 0.010706638 0.98929336
## Geum.urbanum 1.000000000 0.00000000
## Glechoma.hederacea 1.000000000 0.00000000
## Helicotrichon.spp. 1.000000000 0.00000000
## Heracleum.sphondylium 0.895522388 0.10447761
## Hieracium.spp. 0.000000000 1.00000000
## Holcus.spp. 0.370224498 0.62977550
## Holcus.lanatus 0.810032895 0.18996711
## Holcus.mollis 1.000000000 0.00000000
## Homalothecium.lutescens 0.000000000 1.00000000
## Hylocomium.splendens 1.000000000 0.00000000
## Hypericum.perforatum 0.645161290 0.35483871
## Hypnum.cupressiforme 0.537897311 0.46210269
## Hypnum.imponens 1.000000000 0.00000000
## Hypnum.jutlandicum 1.000000000 0.00000000
## Hypochaeris.radicata 0.000000000 1.00000000
## Kindbergia.praelonga 1.000000000 0.00000000
## Lathyrus.pratensis 1.000000000 0.00000000
## Leontodon.hispidus 0.000000000 1.00000000
## Leontodon.saxatilis 0.000000000 1.00000000
## Leucanthemum.vulgare 0.477611940 0.52238806
## Linum.catharticum 0.095693780 0.90430622
## Lolium.perenne 0.977683316 0.02231668
## Lophocolea.semiteres 1.000000000 0.00000000
## Lotus.corniculatus 0.515079634 0.48492037
## Luzula.multiflora 1.000000000 0.00000000
## Lysimachia.maritima 0.974421437 0.02557856
## Medicago.lupulina 0.860927152 0.13907285
## Myosotis.arvensis 0.119760479 0.88023952
## Ononis.repens 0.340000000 0.66000000
## Oxalis.acetosella 1.000000000 0.00000000
## Pastinaca.sativa 0.000000000 1.00000000
## Pentaglottis.sempervirens 0.000000000 1.00000000
## Pillosella.officinarum 0.158536585 0.84146341
## Plantago.coronopus 0.608000000 0.39200000
## Plantago.lanceolata 0.574324324 0.42567568
## Pleurozium.schreberi 1.000000000 0.00000000
## Poa.annua 0.665701881 0.33429812
## Poa.spp. 1.000000000 0.00000000
## Polytrichum.commune 1.000000000 0.00000000
## Polytrichum.commune.agg. 1.000000000 0.00000000
## Polytrichum.formosum 1.000000000 0.00000000
## Potentilla.reptans 0.928652322 0.07134768
## Prunella.vulgaris 0.404858300 0.59514170
## Pseudoscleropidum.purum 0.697498105 0.30250190
## Pteridium.aquilinum 1.000000000 0.00000000
## Ranunculus.acris 1.000000000 0.00000000
## Ranunculus.repens 0.963855422 0.03614458
## Reseda.lutea 0.000000000 1.00000000
## Rhinanthus.minor 1.000000000 0.00000000
## Rhizomnium.punctatum 1.000000000 0.00000000
## Rhytidadelphus.squarrosus 0.818253344 0.18174666
## Rhytidadelphus.triquetris 1.000000000 0.00000000
## Rubus.fruticosus 1.000000000 0.00000000
## Sanguisorba.minor.spp.minor 0.000000000 1.00000000
## Saniona.uncinata 1.000000000 0.00000000
## Sedum.anglicum 0.000000000 1.00000000
## Senecio.jacobaea 1.000000000 0.00000000
## Senecio.vulgaris 0.000000000 1.00000000
## Sonchus.arvensis 1.000000000 0.00000000
## Stachys.sylvatica 1.000000000 0.00000000
## Stellaria.apetala 1.000000000 0.00000000
## Taraxacum.agg. 0.039761431 0.96023857
## Thuidium.tamariscinum 1.000000000 0.00000000
## Thymus.polytrichus 0.461591457 0.53840854
## Trichostomum.crispulum 0.180180180 0.81981982
## Trifolium.campestre 0.106382979 0.89361702
## Trifolium.dubium 0.000000000 1.00000000
## Trifolium.pratense 0.199004975 0.80099502
## Trifolium.repens 0.605069501 0.39493050
## Trisetum.flavescens 0.007443245 0.99255675
## Tussilago.farfara 0.857787810 0.14221219
## Urtica.diocia 0.448772227 0.55122777
## Veronica.officinalis 1.000000000 0.00000000
## Vicia.sativa 1.000000000 0.00000000
## Viola.riviniana 1.000000000 0.00000000
## Weissia.controversa 1.000000000 0.00000000
## Zygodon.stirtonii 0.000000000 1.00000000
##
## $indval
## 1 5
## Agrostis.spp. 0.3809523810 0.0000000000
## Agrostis.canina 0.0476190476 0.0000000000
## Alchemilla.mollis 0.0476190476 0.0000000000
## Alopercus.pratensis 0.0000000000 0.0500000000
## Angelica.sylvestris 0.0952380952 0.0000000000
## Anthoxanthum.odoratum 0.2857142857 0.0000000000
## Anthyllis.vulneraria 0.0573443372 0.0596826688
## Aphanes.arvensis 0.0662525880 0.0152173913
## Arrhenatherum.elatius 0.3280343174 0.0007948524
## Atrichum.undulatum 0.0952380952 0.0000000000
## Avenula.pratensis 0.0000000000 0.0500000000
## Bellis.perennis 0.0685925340 0.2559556787
## Betula.pubescens 0.0476190476 0.0000000000
## Blackstonia.perfoliata 0.0000000000 0.0500000000
## Brachythecium.albicans 0.0000000000 0.0500000000
## Brachythecium.glareosum 0.0476190476 0.0000000000
## Brachythecium.mildeanum 0.1904761905 0.0000000000
## Brachythecium.rutabulum 0.1460706982 0.0193251534
## Briza.media 0.0000000000 0.1500000000
## Bromus.hordeaceus 0.0476190476 0.0000000000
## Bryum.c.f..caespiticium 0.0476190476 0.0000000000
## Bryum.c.f..pallescens 0.0037943464 0.0920318725
## Bryum.capillare 0.0476190476 0.0000000000
## Bryum.spp. 0.0732600733 0.0115384615
## Calliergonella.cupsidata 0.3176338879 0.0832422089
## Calypogeia.arguta 0.3809523810 0.0000000000
## Campanula.rotundifolia 0.0476190476 0.0000000000
## Carex.distans 0.0325172748 0.0158568615
## Carex.flacca 0.0917334086 0.0715732280
## Carex.panicea 0.0476190476 0.0000000000
## Carlina.vulgaris 0.0031746032 0.4200000000
## Centaurea.nigra 0.0312256050 0.0172131148
## Centaurium.erythraea 0.0000000000 0.1000000000
## Centaurium.littorale 0.0532800533 0.0440559441
## Centaurium.pulchellum 0.0476190476 0.0000000000
## Cerastium.fontanum 0.0862533693 0.0792452830
## Chamaenerion.angustifolium 0.0476190476 0.0000000000
## Cirriphyllum.piliferum 0.0476190476 0.0000000000
## Cirsium.arvense 0.1428571429 0.0000000000
## Cirsium.palustre 0.0952380952 0.0000000000
## Crepis.capillaris 0.0952380952 0.0000000000
## Cynosurus.cristatus 0.0777453839 0.0091836735
## Dactylis.glomerata 0.2077922078 0.0063636364
## Dactylorhiza.fuchsii 0.0952380952 0.0000000000
## Danthonia.decumbens 0.0476190476 0.0000000000
## Daucus.carrota 0.0153609831 0.0338709677
## Dicranella.spp. 0.0000000000 0.0500000000
## Dicranum.scoparium 0.2380952381 0.0000000000
## Epilobium.montanum 0.1428571429 0.0000000000
## Equisetum.arvense 0.1428571429 0.0000000000
## Equisteum.variegatum 0.0476190476 0.0000000000
## Erigeron.acer 0.0000000000 0.1000000000
## Euphrasia.agg 0.0165631470 0.3195652174
## Festuca.ovina 0.0057902538 0.2635214008
## Festuca.rubra 0.0878308243 0.3155552689
## Festuca.rubra.agg. 0.0476190476 0.0000000000
## Filipendula.ulmaria 0.1428571429 0.0000000000
## Fissidens.adianthoides 0.0476190476 0.0000000000
## Fissidens.dubius 0.0153609831 0.0338709677
## Fissidens.exilis 0.0000000000 0.0500000000
## Fragaria.vesca 0.2857142857 0.0000000000
## Galium.aparine 0.0000000000 0.0500000000
## Galium.arvense 0.0476190476 0.0000000000
## Galium.saxatile 0.0000000000 0.0500000000
## Galium.verum 0.0005098399 0.1483940043
## Geum.urbanum 0.0476190476 0.0000000000
## Glechoma.hederacea 0.0476190476 0.0000000000
## Helicotrichon.spp. 0.0476190476 0.0000000000
## Heracleum.sphondylium 0.0852878465 0.0052238806
## Hieracium.spp. 0.0000000000 0.0500000000
## Holcus.spp. 0.1234081659 0.4408428515
## Holcus.lanatus 0.2314379699 0.0569901316
## Holcus.mollis 0.2857142857 0.0000000000
## Homalothecium.lutescens 0.0000000000 0.1000000000
## Hylocomium.splendens 0.3333333333 0.0000000000
## Hypericum.perforatum 0.1536098310 0.0177419355
## Hypnum.cupressiforme 0.1792991035 0.0693154034
## Hypnum.imponens 0.0476190476 0.0000000000
## Hypnum.jutlandicum 0.1428571429 0.0000000000
## Hypochaeris.radicata 0.0000000000 0.0500000000
## Kindbergia.praelonga 0.2857142857 0.0000000000
## Lathyrus.pratensis 0.1428571429 0.0000000000
## Leontodon.hispidus 0.0000000000 0.2500000000
## Leontodon.saxatilis 0.0000000000 0.0500000000
## Leucanthemum.vulgare 0.1592039801 0.1828358209
## Linum.catharticum 0.0045568467 0.1808612440
## Lolium.perenne 0.1396690451 0.0011158342
## Lophocolea.semiteres 0.0476190476 0.0000000000
## Lotus.corniculatus 0.1716932113 0.2667062013
## Luzula.multiflora 0.0476190476 0.0000000000
## Lysimachia.maritima 0.0464010208 0.0012789281
## Medicago.lupulina 0.0409965311 0.0278145695
## Myosotis.arvensis 0.0057028800 0.1760479042
## Ononis.repens 0.0647619048 0.1320000000
## Oxalis.acetosella 0.0476190476 0.0000000000
## Pastinaca.sativa 0.0000000000 0.0500000000
## Pentaglottis.sempervirens 0.0000000000 0.0500000000
## Pillosella.officinarum 0.0075493612 0.4628048780
## Plantago.coronopus 0.0289523810 0.0588000000
## Plantago.lanceolata 0.1640926641 0.1489864865
## Pleurozium.schreberi 0.1904761905 0.0000000000
## Poa.annua 0.0634001792 0.0167149059
## Poa.spp. 0.0476190476 0.0000000000
## Polytrichum.commune 0.0476190476 0.0000000000
## Polytrichum.commune.agg. 0.0476190476 0.0000000000
## Polytrichum.formosum 0.0476190476 0.0000000000
## Potentilla.reptans 0.0884430783 0.0071347678
## Prunella.vulgaris 0.0578368999 0.0595141700
## Pseudoscleropidum.purum 0.1992851727 0.0302501895
## Pteridium.aquilinum 0.1428571429 0.0000000000
## Ranunculus.acris 0.0476190476 0.0000000000
## Ranunculus.repens 0.0917957544 0.0018072289
## Reseda.lutea 0.0000000000 0.0500000000
## Rhinanthus.minor 0.0476190476 0.0000000000
## Rhizomnium.punctatum 0.0476190476 0.0000000000
## Rhytidadelphus.squarrosus 0.3896444494 0.0272619984
## Rhytidadelphus.triquetris 0.0952380952 0.0000000000
## Rubus.fruticosus 0.0952380952 0.0000000000
## Sanguisorba.minor.spp.minor 0.0000000000 0.1000000000
## Saniona.uncinata 0.0952380952 0.0000000000
## Sedum.anglicum 0.0000000000 0.0500000000
## Senecio.jacobaea 0.0952380952 0.0000000000
## Senecio.vulgaris 0.0000000000 0.0500000000
## Sonchus.arvensis 0.0476190476 0.0000000000
## Stachys.sylvatica 0.0952380952 0.0000000000
## Stellaria.apetala 0.0476190476 0.0000000000
## Taraxacum.agg. 0.0018934015 0.4801192843
## Thuidium.tamariscinum 0.1428571429 0.0000000000
## Thymus.polytrichus 0.0439610912 0.1615225629
## Trichostomum.crispulum 0.0171600172 0.1639639640
## Trifolium.campestre 0.0101317123 0.2234042553
## Trifolium.dubium 0.0000000000 0.1000000000
## Trifolium.pratense 0.0189528548 0.0800995025
## Trifolium.repens 0.0576256668 0.0592395748
## Trisetum.flavescens 0.0003544403 0.1488835132
## Tussilago.farfara 0.0816940772 0.0071106095
## Urtica.diocia 0.0427402121 0.0551227773
## Veronica.officinalis 0.0476190476 0.0000000000
## Vicia.sativa 0.0476190476 0.0000000000
## Viola.riviniana 0.0476190476 0.0000000000
## Weissia.controversa 0.0476190476 0.0000000000
## Zygodon.stirtonii 0.0000000000 0.0500000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 2
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 2 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 2 2
## Betula.pubescens Blackstonia.perfoliata
## 1 2
## Brachythecium.albicans Brachythecium.glareosum
## 2 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 2 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 2
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 2 1
## Centaurium.erythraea Centaurium.littorale
## 2 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 2
## Dicranella.spp. Dicranum.scoparium
## 2 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 2
## Euphrasia.agg Festuca.ovina
## 2 2
## Festuca.rubra Festuca.rubra.agg.
## 2 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 2 2
## Fragaria.vesca Galium.aparine
## 1 2
## Galium.arvense Galium.saxatile
## 1 2
## Galium.verum Geum.urbanum
## 2 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 2
## Holcus.spp. Holcus.lanatus
## 2 1
## Holcus.mollis Homalothecium.lutescens
## 1 2
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 2
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 2 2
## Leucanthemum.vulgare Linum.catharticum
## 2 2
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 2 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 2 2
## Oxalis.acetosella Pastinaca.sativa
## 1 2
## Pentaglottis.sempervirens Pillosella.officinarum
## 2 2
## Plantago.coronopus Plantago.lanceolata
## 2 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 2
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 2 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 2 1
## Sedum.anglicum Senecio.jacobaea
## 2 1
## Senecio.vulgaris Sonchus.arvensis
## 2 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 2 1
## Thymus.polytrichus Trichostomum.crispulum
## 2 2
## Trifolium.campestre Trifolium.dubium
## 2 2
## Trifolium.pratense Trifolium.repens
## 2 2
## Trisetum.flavescens Tussilago.farfara
## 2 1
## Urtica.diocia Veronica.officinalis
## 2 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 2
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.38095238 0.04761905
## Alchemilla.mollis Alopercus.pratensis
## 0.04761905 0.05000000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.09523810 0.28571429
## Anthyllis.vulneraria Aphanes.arvensis
## 0.05968267 0.06625259
## Arrhenatherum.elatius Atrichum.undulatum
## 0.32803432 0.09523810
## Avenula.pratensis Bellis.perennis
## 0.05000000 0.25595568
## Betula.pubescens Blackstonia.perfoliata
## 0.04761905 0.05000000
## Brachythecium.albicans Brachythecium.glareosum
## 0.05000000 0.04761905
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.19047619 0.14607070
## Briza.media Bromus.hordeaceus
## 0.15000000 0.04761905
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.04761905 0.09203187
## Bryum.capillare Bryum.spp.
## 0.04761905 0.07326007
## Calliergonella.cupsidata Calypogeia.arguta
## 0.31763389 0.38095238
## Campanula.rotundifolia Carex.distans
## 0.04761905 0.03251727
## Carex.flacca Carex.panicea
## 0.09173341 0.04761905
## Carlina.vulgaris Centaurea.nigra
## 0.42000000 0.03122560
## Centaurium.erythraea Centaurium.littorale
## 0.10000000 0.05328005
## Centaurium.pulchellum Cerastium.fontanum
## 0.04761905 0.08625337
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.04761905 0.04761905
## Cirsium.arvense Cirsium.palustre
## 0.14285714 0.09523810
## Crepis.capillaris Cynosurus.cristatus
## 0.09523810 0.07774538
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.20779221 0.09523810
## Danthonia.decumbens Daucus.carrota
## 0.04761905 0.03387097
## Dicranella.spp. Dicranum.scoparium
## 0.05000000 0.23809524
## Epilobium.montanum Equisetum.arvense
## 0.14285714 0.14285714
## Equisteum.variegatum Erigeron.acer
## 0.04761905 0.10000000
## Euphrasia.agg Festuca.ovina
## 0.31956522 0.26352140
## Festuca.rubra Festuca.rubra.agg.
## 0.31555527 0.04761905
## Filipendula.ulmaria Fissidens.adianthoides
## 0.14285714 0.04761905
## Fissidens.dubius Fissidens.exilis
## 0.03387097 0.05000000
## Fragaria.vesca Galium.aparine
## 0.28571429 0.05000000
## Galium.arvense Galium.saxatile
## 0.04761905 0.05000000
## Galium.verum Geum.urbanum
## 0.14839400 0.04761905
## Glechoma.hederacea Helicotrichon.spp.
## 0.04761905 0.04761905
## Heracleum.sphondylium Hieracium.spp.
## 0.08528785 0.05000000
## Holcus.spp. Holcus.lanatus
## 0.44084285 0.23143797
## Holcus.mollis Homalothecium.lutescens
## 0.28571429 0.10000000
## Hylocomium.splendens Hypericum.perforatum
## 0.33333333 0.15360983
## Hypnum.cupressiforme Hypnum.imponens
## 0.17929910 0.04761905
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.14285714 0.05000000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.28571429 0.14285714
## Leontodon.hispidus Leontodon.saxatilis
## 0.25000000 0.05000000
## Leucanthemum.vulgare Linum.catharticum
## 0.18283582 0.18086124
## Lolium.perenne Lophocolea.semiteres
## 0.13966905 0.04761905
## Lotus.corniculatus Luzula.multiflora
## 0.26670620 0.04761905
## Lysimachia.maritima Medicago.lupulina
## 0.04640102 0.04099653
## Myosotis.arvensis Ononis.repens
## 0.17604790 0.13200000
## Oxalis.acetosella Pastinaca.sativa
## 0.04761905 0.05000000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.05000000 0.46280488
## Plantago.coronopus Plantago.lanceolata
## 0.05880000 0.16409266
## Pleurozium.schreberi Poa.annua
## 0.19047619 0.06340018
## Poa.spp. Polytrichum.commune
## 0.04761905 0.04761905
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.04761905 0.04761905
## Potentilla.reptans Prunella.vulgaris
## 0.08844308 0.05951417
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.19928517 0.14285714
## Ranunculus.acris Ranunculus.repens
## 0.04761905 0.09179575
## Reseda.lutea Rhinanthus.minor
## 0.05000000 0.04761905
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.04761905 0.38964445
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.09523810 0.09523810
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.10000000 0.09523810
## Sedum.anglicum Senecio.jacobaea
## 0.05000000 0.09523810
## Senecio.vulgaris Sonchus.arvensis
## 0.05000000 0.04761905
## Stachys.sylvatica Stellaria.apetala
## 0.09523810 0.04761905
## Taraxacum.agg. Thuidium.tamariscinum
## 0.48011928 0.14285714
## Thymus.polytrichus Trichostomum.crispulum
## 0.16152256 0.16396396
## Trifolium.campestre Trifolium.dubium
## 0.22340426 0.10000000
## Trifolium.pratense Trifolium.repens
## 0.08009950 0.05923957
## Trisetum.flavescens Tussilago.farfara
## 0.14888351 0.08169408
## Urtica.diocia Veronica.officinalis
## 0.05512278 0.04761905
## Vicia.sativa Viola.riviniana
## 0.04761905 0.04761905
## Weissia.controversa Zygodon.stirtonii
## 0.04761905 0.05000000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.010 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 0.469
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.470 0.021
## Anthyllis.vulneraria Aphanes.arvensis
## 1.000 0.759
## Arrhenatherum.elatius Atrichum.undulatum
## 0.024 0.509
## Avenula.pratensis Bellis.perennis
## 0.516 0.229
## Betula.pubescens Blackstonia.perfoliata
## 1.000 0.487
## Brachythecium.albicans Brachythecium.glareosum
## 0.450 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.120 0.331
## Briza.media Bromus.hordeaceus
## 0.112 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 0.372
## Bryum.capillare Bryum.spp.
## 1.000 0.758
## Calliergonella.cupsidata Calypogeia.arguta
## 0.178 0.010
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.913 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.005 1.000
## Centaurium.erythraea Centaurium.littorale
## 0.229 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 1.000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 0.236 0.502
## Crepis.capillaris Cynosurus.cristatus
## 0.466 0.625
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.141 0.482
## Danthonia.decumbens Daucus.carrota
## 1.000 0.759
## Dicranella.spp. Dicranum.scoparium
## 0.512 0.053
## Epilobium.montanum Equisetum.arvense
## 0.238 0.253
## Equisteum.variegatum Erigeron.acer
## 1.000 0.212
## Euphrasia.agg Festuca.ovina
## 0.069 0.049
## Festuca.rubra Festuca.rubra.agg.
## 0.165 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.243 1.000
## Fissidens.dubius Fissidens.exilis
## 0.755 0.477
## Fragaria.vesca Galium.aparine
## 0.024 0.492
## Galium.arvense Galium.saxatile
## 1.000 0.457
## Galium.verum Geum.urbanum
## 0.219 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 0.769 0.468
## Holcus.spp. Holcus.lanatus
## 0.085 0.405
## Holcus.mollis Homalothecium.lutescens
## 0.018 0.218
## Hylocomium.splendens Hypericum.perforatum
## 0.009 0.333
## Hypnum.cupressiforme Hypnum.imponens
## 0.486 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.238 0.464
## Kindbergia.praelonga Lathyrus.pratensis
## 0.022 0.246
## Leontodon.hispidus Leontodon.saxatilis
## 0.016 0.484
## Leucanthemum.vulgare Linum.catharticum
## 0.877 0.109
## Lolium.perenne Lophocolea.semiteres
## 0.428 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.626 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 0.132 0.685
## Oxalis.acetosella Pastinaca.sativa
## 1.000 0.444
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.480 0.004
## Plantago.coronopus Plantago.lanceolata
## 0.863 0.931
## Pleurozium.schreberi Poa.annua
## 0.095 0.744
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 0.674 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.244 0.237
## Ranunculus.acris Ranunculus.repens
## 1.000 0.501
## Reseda.lutea Rhinanthus.minor
## 0.479 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.014
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.488 0.501
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.247 0.512
## Sedum.anglicum Senecio.jacobaea
## 0.472 0.457
## Senecio.vulgaris Sonchus.arvensis
## 0.492 1.000
## Stachys.sylvatica Stellaria.apetala
## 0.489 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.001 0.240
## Thymus.polytrichus Trichostomum.crispulum
## 0.416 0.192
## Trifolium.campestre Trifolium.dubium
## 0.144 0.221
## Trifolium.pratense Trifolium.repens
## 0.684 1.000
## Trisetum.flavescens Tussilago.farfara
## 0.212 0.608
## Urtica.diocia Veronica.officinalis
## 0.802 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 0.477
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#There are many indicator species reported for calcite, as demonstrated in the #CalciteIndvalsummary. The species with the highest indval score, 0.480, is Taraxacum agg. It #also has a low p value of 0.002 So, Taraxacum agg. is reported again, as the indicator #species for calcite.
#Now to do an indval analysis for Gehlenite…
clustGehlenite <-cut(PlantChemistry1$Gehlenite, 5, labels=FALSE)
GehleniteIndval <- indval(as.matrix(PlantSpecies1), clustGehlenite, type= "long")
gr <- GehleniteIndval$maxcls[GehleniteIndval$pval<=0.05]
iv <- GehleniteIndval$indcls[GehleniteIndval$pval<=0.05]
pv <- GehleniteIndval$pval[GehleniteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[GehleniteIndval$pval<=0.05]
GehleniteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
GehleniteIndvalsummary <- GehleniteIndvalsummary[order(GehleniteIndvalsummary$group,
-GehleniteIndvalsummary$indval),]
print(GehleniteIndvalsummary)
## group indval pvalue freq
## Pillosella.officinarum 2 0.7813828 0.001 4
## Taraxacum.agg. 2 0.4626188 0.015 3
## Carlina.vulgaris 2 0.4099245 0.017 2
## Festuca.ovina 2 0.3987805 0.019 15
## Trichostomum.crispulum 2 0.2955500 0.021 7
## Leontodon.hispidus 2 0.2782987 0.034 1
summary(indval(as.matrix(PlantSpecies1), clustGehlenite))
## cluster indicator_value probability
## Pillosella.officinarum 2 0.7814 0.001
## Taraxacum.agg. 2 0.4626 0.014
## Carlina.vulgaris 2 0.4099 0.019
## Festuca.ovina 2 0.3988 0.014
## Trichostomum.crispulum 2 0.2955 0.022
## Leontodon.hispidus 2 0.2783 0.038
##
## Sum of probabilities = 102.4
##
## Sum of Indicator Values = 15.25
##
## Sum of Significant Indicator Values = 2.63
##
## Number of Significant Indicators = 6
##
## Significant Indicator Distribution
##
## 2
## 6
print(indval(as.matrix(PlantSpecies1), clustGehlenite))
## $relfrq
## 1 5
## Agrostis.spp. 0.25000 0.0000000
## Agrostis.canina 0.03125 0.0000000
## Alchemilla.mollis 0.03125 0.0000000
## Alopercus.pratensis 0.03125 0.0000000
## Angelica.sylvestris 0.06250 0.0000000
## Anthoxanthum.odoratum 0.18750 0.0000000
## Anthyllis.vulneraria 0.09375 0.2222222
## Aphanes.arvensis 0.09375 0.0000000
## Arrhenatherum.elatius 0.25000 0.0000000
## Atrichum.undulatum 0.06250 0.0000000
## Avenula.pratensis 0.03125 0.0000000
## Bellis.perennis 0.25000 0.4444444
## Betula.pubescens 0.03125 0.0000000
## Blackstonia.perfoliata 0.03125 0.0000000
## Brachythecium.albicans 0.03125 0.0000000
## Brachythecium.glareosum 0.03125 0.0000000
## Brachythecium.mildeanum 0.12500 0.0000000
## Brachythecium.rutabulum 0.18750 0.0000000
## Briza.media 0.06250 0.1111111
## Bromus.hordeaceus 0.03125 0.0000000
## Bryum.c.f..caespiticium 0.03125 0.0000000
## Bryum.c.f..pallescens 0.06250 0.1111111
## Bryum.capillare 0.03125 0.0000000
## Bryum.spp. 0.06250 0.1111111
## Calliergonella.cupsidata 0.43750 0.1111111
## Calypogeia.arguta 0.25000 0.0000000
## Campanula.rotundifolia 0.03125 0.0000000
## Carex.distans 0.03125 0.1111111
## Carex.flacca 0.15625 0.2222222
## Carex.panicea 0.03125 0.0000000
## Carlina.vulgaris 0.15625 0.5555556
## Centaurea.nigra 0.03125 0.1111111
## Centaurium.erythraea 0.06250 0.0000000
## Centaurium.littorale 0.09375 0.1111111
## Centaurium.pulchellum 0.03125 0.0000000
## Cerastium.fontanum 0.18750 0.1111111
## Chamaenerion.angustifolium 0.03125 0.0000000
## Cirriphyllum.piliferum 0.03125 0.0000000
## Cirsium.arvense 0.09375 0.0000000
## Cirsium.palustre 0.06250 0.0000000
## Crepis.capillaris 0.06250 0.0000000
## Cynosurus.cristatus 0.09375 0.0000000
## Dactylis.glomerata 0.18750 0.0000000
## Dactylorhiza.fuchsii 0.06250 0.0000000
## Danthonia.decumbens 0.03125 0.0000000
## Daucus.carrota 0.03125 0.1111111
## Dicranella.spp. 0.00000 0.1111111
## Dicranum.scoparium 0.15625 0.0000000
## Epilobium.montanum 0.09375 0.0000000
## Equisetum.arvense 0.09375 0.0000000
## Equisteum.variegatum 0.03125 0.0000000
## Erigeron.acer 0.03125 0.1111111
## Euphrasia.agg 0.28125 0.2222222
## Festuca.ovina 0.09375 0.4444444
## Festuca.rubra 0.34375 0.4444444
## Festuca.rubra.agg. 0.03125 0.0000000
## Filipendula.ulmaria 0.09375 0.0000000
## Fissidens.adianthoides 0.03125 0.0000000
## Fissidens.dubius 0.03125 0.1111111
## Fissidens.exilis 0.00000 0.1111111
## Fragaria.vesca 0.18750 0.0000000
## Galium.aparine 0.03125 0.0000000
## Galium.arvense 0.03125 0.0000000
## Galium.saxatile 0.03125 0.0000000
## Galium.verum 0.09375 0.1111111
## Geum.urbanum 0.03125 0.0000000
## Glechoma.hederacea 0.03125 0.0000000
## Helicotrichon.spp. 0.03125 0.0000000
## Heracleum.sphondylium 0.09375 0.0000000
## Hieracium.spp. 0.00000 0.1111111
## Holcus.spp. 0.46875 0.6666667
## Holcus.lanatus 0.28125 0.3333333
## Holcus.mollis 0.18750 0.0000000
## Homalothecium.lutescens 0.06250 0.0000000
## Hylocomium.splendens 0.21875 0.0000000
## Hypericum.perforatum 0.15625 0.1111111
## Hypnum.cupressiforme 0.25000 0.2222222
## Hypnum.imponens 0.03125 0.0000000
## Hypnum.jutlandicum 0.09375 0.0000000
## Hypochaeris.radicata 0.03125 0.0000000
## Kindbergia.praelonga 0.18750 0.0000000
## Lathyrus.pratensis 0.09375 0.0000000
## Leontodon.hispidus 0.06250 0.3333333
## Leontodon.saxatilis 0.00000 0.1111111
## Leucanthemum.vulgare 0.31250 0.4444444
## Linum.catharticum 0.12500 0.1111111
## Lolium.perenne 0.12500 0.0000000
## Lophocolea.semiteres 0.03125 0.0000000
## Lotus.corniculatus 0.40625 0.5555556
## Luzula.multiflora 0.03125 0.0000000
## Lysimachia.maritima 0.03125 0.1111111
## Medicago.lupulina 0.09375 0.2222222
## Myosotis.arvensis 0.12500 0.1111111
## Ononis.repens 0.21875 0.1111111
## Oxalis.acetosella 0.03125 0.0000000
## Pastinaca.sativa 0.03125 0.0000000
## Pentaglottis.sempervirens 0.03125 0.0000000
## Pillosella.officinarum 0.12500 0.8888889
## Plantago.coronopus 0.06250 0.2222222
## Plantago.lanceolata 0.31250 0.3333333
## Pleurozium.schreberi 0.12500 0.0000000
## Poa.annua 0.06250 0.1111111
## Poa.spp. 0.03125 0.0000000
## Polytrichum.commune 0.03125 0.0000000
## Polytrichum.commune.agg. 0.03125 0.0000000
## Polytrichum.formosum 0.03125 0.0000000
## Potentilla.reptans 0.09375 0.1111111
## Prunella.vulgaris 0.15625 0.0000000
## Pseudoscleropidum.purum 0.21875 0.1111111
## Pteridium.aquilinum 0.09375 0.0000000
## Ranunculus.acris 0.03125 0.0000000
## Ranunculus.repens 0.09375 0.0000000
## Reseda.lutea 0.03125 0.0000000
## Rhinanthus.minor 0.03125 0.0000000
## Rhizomnium.punctatum 0.03125 0.0000000
## Rhytidadelphus.squarrosus 0.40625 0.0000000
## Rhytidadelphus.triquetris 0.06250 0.0000000
## Rubus.fruticosus 0.06250 0.0000000
## Sanguisorba.minor.spp.minor 0.06250 0.0000000
## Saniona.uncinata 0.06250 0.0000000
## Sedum.anglicum 0.03125 0.0000000
## Senecio.jacobaea 0.06250 0.0000000
## Senecio.vulgaris 0.00000 0.1111111
## Sonchus.arvensis 0.03125 0.0000000
## Stachys.sylvatica 0.06250 0.0000000
## Stellaria.apetala 0.03125 0.0000000
## Taraxacum.agg. 0.18750 0.5555556
## Thuidium.tamariscinum 0.09375 0.0000000
## Thymus.polytrichus 0.15625 0.3333333
## Trichostomum.crispulum 0.09375 0.3333333
## Trifolium.campestre 0.15625 0.2222222
## Trifolium.dubium 0.03125 0.1111111
## Trifolium.pratense 0.12500 0.0000000
## Trifolium.repens 0.15625 0.0000000
## Trisetum.flavescens 0.09375 0.1111111
## Tussilago.farfara 0.06250 0.1111111
## Urtica.diocia 0.12500 0.0000000
## Veronica.officinalis 0.03125 0.0000000
## Vicia.sativa 0.03125 0.0000000
## Viola.riviniana 0.03125 0.0000000
## Weissia.controversa 0.03125 0.0000000
## Zygodon.stirtonii 0.03125 0.0000000
##
## $relabu
## 1 5
## Agrostis.spp. 1.0000000 0.00000000
## Agrostis.canina 1.0000000 0.00000000
## Alchemilla.mollis 1.0000000 0.00000000
## Alopercus.pratensis 1.0000000 0.00000000
## Angelica.sylvestris 1.0000000 0.00000000
## Anthoxanthum.odoratum 1.0000000 0.00000000
## Anthyllis.vulneraria 0.7509728 0.24902724
## Aphanes.arvensis 1.0000000 0.00000000
## Arrhenatherum.elatius 1.0000000 0.00000000
## Atrichum.undulatum 1.0000000 0.00000000
## Avenula.pratensis 1.0000000 0.00000000
## Bellis.perennis 0.3360996 0.66390041
## Betula.pubescens 1.0000000 0.00000000
## Blackstonia.perfoliata 1.0000000 0.00000000
## Brachythecium.albicans 1.0000000 0.00000000
## Brachythecium.glareosum 1.0000000 0.00000000
## Brachythecium.mildeanum 1.0000000 0.00000000
## Brachythecium.rutabulum 1.0000000 0.00000000
## Briza.media 0.8378721 0.16212793
## Bromus.hordeaceus 1.0000000 0.00000000
## Bryum.c.f..caespiticium 1.0000000 0.00000000
## Bryum.c.f..pallescens 0.2825112 0.71748879
## Bryum.capillare 1.0000000 0.00000000
## Bryum.spp. 0.4960630 0.50393701
## Calliergonella.cupsidata 0.6464088 0.35359116
## Calypogeia.arguta 1.0000000 0.00000000
## Campanula.rotundifolia 1.0000000 0.00000000
## Carex.distans 0.3887043 0.61129568
## Carex.flacca 0.6417910 0.35820896
## Carex.panicea 1.0000000 0.00000000
## Carlina.vulgaris 0.2621359 0.73786408
## Centaurea.nigra 0.3600000 0.64000000
## Centaurium.erythraea 1.0000000 0.00000000
## Centaurium.littorale 0.3360996 0.66390041
## Centaurium.pulchellum 1.0000000 0.00000000
## Cerastium.fontanum 0.7714286 0.22857143
## Chamaenerion.angustifolium 1.0000000 0.00000000
## Cirriphyllum.piliferum 1.0000000 0.00000000
## Cirsium.arvense 1.0000000 0.00000000
## Cirsium.palustre 1.0000000 0.00000000
## Crepis.capillaris 1.0000000 0.00000000
## Cynosurus.cristatus 1.0000000 0.00000000
## Dactylis.glomerata 1.0000000 0.00000000
## Dactylorhiza.fuchsii 1.0000000 0.00000000
## Danthonia.decumbens 1.0000000 0.00000000
## Daucus.carrota 0.1232877 0.87671233
## Dicranella.spp. 0.0000000 1.00000000
## Dicranum.scoparium 1.0000000 0.00000000
## Epilobium.montanum 1.0000000 0.00000000
## Equisetum.arvense 1.0000000 0.00000000
## Equisteum.variegatum 1.0000000 0.00000000
## Erigeron.acer 0.5395683 0.46043165
## Euphrasia.agg 0.3628671 0.63713290
## Festuca.ovina 0.1027438 0.89725616
## Festuca.rubra 0.4370162 0.56298381
## Festuca.rubra.agg. 1.0000000 0.00000000
## Filipendula.ulmaria 1.0000000 0.00000000
## Fissidens.adianthoides 1.0000000 0.00000000
## Fissidens.dubius 0.1232877 0.87671233
## Fissidens.exilis 0.0000000 1.00000000
## Fragaria.vesca 1.0000000 0.00000000
## Galium.aparine 1.0000000 0.00000000
## Galium.arvense 1.0000000 0.00000000
## Galium.saxatile 1.0000000 0.00000000
## Galium.verum 0.9803077 0.01969231
## Geum.urbanum 1.0000000 0.00000000
## Glechoma.hederacea 1.0000000 0.00000000
## Helicotrichon.spp. 1.0000000 0.00000000
## Heracleum.sphondylium 1.0000000 0.00000000
## Hieracium.spp. 0.0000000 1.00000000
## Holcus.spp. 0.5247390 0.47526097
## Holcus.lanatus 0.8314425 0.16855754
## Holcus.mollis 1.0000000 0.00000000
## Homalothecium.lutescens 1.0000000 0.00000000
## Hylocomium.splendens 1.0000000 0.00000000
## Hypericum.perforatum 0.3493530 0.65064695
## Hypnum.cupressiforme 0.3431085 0.65689150
## Hypnum.imponens 1.0000000 0.00000000
## Hypnum.jutlandicum 1.0000000 0.00000000
## Hypochaeris.radicata 1.0000000 0.00000000
## Kindbergia.praelonga 1.0000000 0.00000000
## Lathyrus.pratensis 1.0000000 0.00000000
## Leontodon.hispidus 0.1651040 0.83489605
## Leontodon.saxatilis 0.0000000 1.00000000
## Leucanthemum.vulgare 0.3360996 0.66390041
## Linum.catharticum 0.8423645 0.15763547
## Lolium.perenne 1.0000000 0.00000000
## Lophocolea.semiteres 1.0000000 0.00000000
## Lotus.corniculatus 0.3718289 0.62817106
## Luzula.multiflora 1.0000000 0.00000000
## Lysimachia.maritima 0.9183673 0.08163265
## Medicago.lupulina 0.7732507 0.22674934
## Myosotis.arvensis 0.8083832 0.19161677
## Ononis.repens 0.9793348 0.02066516
## Oxalis.acetosella 1.0000000 0.00000000
## Pastinaca.sativa 1.0000000 0.00000000
## Pentaglottis.sempervirens 1.0000000 0.00000000
## Pillosella.officinarum 0.1209444 0.87905561
## Plantago.coronopus 0.4231177 0.57688229
## Plantago.lanceolata 0.5627956 0.43720441
## Pleurozium.schreberi 1.0000000 0.00000000
## Poa.annua 0.3703041 0.62969589
## Poa.spp. 1.0000000 0.00000000
## Polytrichum.commune 1.0000000 0.00000000
## Polytrichum.commune.agg. 1.0000000 0.00000000
## Polytrichum.formosum 1.0000000 0.00000000
## Potentilla.reptans 0.8552036 0.14479638
## Prunella.vulgaris 1.0000000 0.00000000
## Pseudoscleropidum.purum 0.4627492 0.53725079
## Pteridium.aquilinum 1.0000000 0.00000000
## Ranunculus.acris 1.0000000 0.00000000
## Ranunculus.repens 1.0000000 0.00000000
## Reseda.lutea 1.0000000 0.00000000
## Rhinanthus.minor 1.0000000 0.00000000
## Rhizomnium.punctatum 1.0000000 0.00000000
## Rhytidadelphus.squarrosus 1.0000000 0.00000000
## Rhytidadelphus.triquetris 1.0000000 0.00000000
## Rubus.fruticosus 1.0000000 0.00000000
## Sanguisorba.minor.spp.minor 1.0000000 0.00000000
## Saniona.uncinata 1.0000000 0.00000000
## Sedum.anglicum 1.0000000 0.00000000
## Senecio.jacobaea 1.0000000 0.00000000
## Senecio.vulgaris 0.0000000 1.00000000
## Sonchus.arvensis 1.0000000 0.00000000
## Stachys.sylvatica 1.0000000 0.00000000
## Stellaria.apetala 1.0000000 0.00000000
## Taraxacum.agg. 0.1672862 0.83271375
## Thuidium.tamariscinum 1.0000000 0.00000000
## Thymus.polytrichus 0.5094093 0.49059071
## Trichostomum.crispulum 0.1133501 0.88664987
## Trifolium.campestre 0.7505846 0.24941543
## Trifolium.dubium 0.2785632 0.72143676
## Trifolium.pratense 1.0000000 0.00000000
## Trifolium.repens 1.0000000 0.00000000
## Trisetum.flavescens 0.9213759 0.07862408
## Tussilago.farfara 0.6404494 0.35955056
## Urtica.diocia 1.0000000 0.00000000
## Veronica.officinalis 1.0000000 0.00000000
## Vicia.sativa 1.0000000 0.00000000
## Viola.riviniana 1.0000000 0.00000000
## Weissia.controversa 1.0000000 0.00000000
## Zygodon.stirtonii 1.0000000 0.00000000
##
## $indval
## 1 5
## Agrostis.spp. 0.250000000 0.000000000
## Agrostis.canina 0.031250000 0.000000000
## Alchemilla.mollis 0.031250000 0.000000000
## Alopercus.pratensis 0.031250000 0.000000000
## Angelica.sylvestris 0.062500000 0.000000000
## Anthoxanthum.odoratum 0.187500000 0.000000000
## Anthyllis.vulneraria 0.070403696 0.055339386
## Aphanes.arvensis 0.093750000 0.000000000
## Arrhenatherum.elatius 0.250000000 0.000000000
## Atrichum.undulatum 0.062500000 0.000000000
## Avenula.pratensis 0.031250000 0.000000000
## Bellis.perennis 0.084024896 0.295066851
## Betula.pubescens 0.031250000 0.000000000
## Blackstonia.perfoliata 0.031250000 0.000000000
## Brachythecium.albicans 0.031250000 0.000000000
## Brachythecium.glareosum 0.031250000 0.000000000
## Brachythecium.mildeanum 0.125000000 0.000000000
## Brachythecium.rutabulum 0.187500000 0.000000000
## Briza.media 0.052367004 0.018014214
## Bromus.hordeaceus 0.031250000 0.000000000
## Bryum.c.f..caespiticium 0.031250000 0.000000000
## Bryum.c.f..pallescens 0.017656951 0.079720977
## Bryum.capillare 0.031250000 0.000000000
## Bryum.spp. 0.031003937 0.055993001
## Calliergonella.cupsidata 0.282803867 0.039287907
## Calypogeia.arguta 0.250000000 0.000000000
## Campanula.rotundifolia 0.031250000 0.000000000
## Carex.distans 0.012147010 0.067921742
## Carex.flacca 0.100279851 0.079601990
## Carex.panicea 0.031250000 0.000000000
## Carlina.vulgaris 0.040958738 0.409924488
## Centaurea.nigra 0.011250000 0.071111111
## Centaurium.erythraea 0.062500000 0.000000000
## Centaurium.littorale 0.031509336 0.073766713
## Centaurium.pulchellum 0.031250000 0.000000000
## Cerastium.fontanum 0.144642857 0.025396825
## Chamaenerion.angustifolium 0.031250000 0.000000000
## Cirriphyllum.piliferum 0.031250000 0.000000000
## Cirsium.arvense 0.093750000 0.000000000
## Cirsium.palustre 0.062500000 0.000000000
## Crepis.capillaris 0.062500000 0.000000000
## Cynosurus.cristatus 0.093750000 0.000000000
## Dactylis.glomerata 0.187500000 0.000000000
## Dactylorhiza.fuchsii 0.062500000 0.000000000
## Danthonia.decumbens 0.031250000 0.000000000
## Daucus.carrota 0.003852740 0.097412481
## Dicranella.spp. 0.000000000 0.111111111
## Dicranum.scoparium 0.156250000 0.000000000
## Epilobium.montanum 0.093750000 0.000000000
## Equisetum.arvense 0.093750000 0.000000000
## Equisteum.variegatum 0.031250000 0.000000000
## Erigeron.acer 0.016861511 0.051159073
## Euphrasia.agg 0.102056371 0.141585089
## Festuca.ovina 0.009632235 0.398780515
## Festuca.rubra 0.150224314 0.250215029
## Festuca.rubra.agg. 0.031250000 0.000000000
## Filipendula.ulmaria 0.093750000 0.000000000
## Fissidens.adianthoides 0.031250000 0.000000000
## Fissidens.dubius 0.003852740 0.097412481
## Fissidens.exilis 0.000000000 0.111111111
## Fragaria.vesca 0.187500000 0.000000000
## Galium.aparine 0.031250000 0.000000000
## Galium.arvense 0.031250000 0.000000000
## Galium.saxatile 0.031250000 0.000000000
## Galium.verum 0.091903846 0.002188034
## Geum.urbanum 0.031250000 0.000000000
## Glechoma.hederacea 0.031250000 0.000000000
## Helicotrichon.spp. 0.031250000 0.000000000
## Heracleum.sphondylium 0.093750000 0.000000000
## Hieracium.spp. 0.000000000 0.111111111
## Holcus.spp. 0.245971421 0.316840646
## Holcus.lanatus 0.233843193 0.056185845
## Holcus.mollis 0.187500000 0.000000000
## Homalothecium.lutescens 0.062500000 0.000000000
## Hylocomium.splendens 0.218750000 0.000000000
## Hypericum.perforatum 0.054586414 0.072294106
## Hypnum.cupressiforme 0.085777126 0.145975888
## Hypnum.imponens 0.031250000 0.000000000
## Hypnum.jutlandicum 0.093750000 0.000000000
## Hypochaeris.radicata 0.031250000 0.000000000
## Kindbergia.praelonga 0.187500000 0.000000000
## Lathyrus.pratensis 0.093750000 0.000000000
## Leontodon.hispidus 0.010318997 0.278298682
## Leontodon.saxatilis 0.000000000 0.111111111
## Leucanthemum.vulgare 0.105031120 0.295066851
## Linum.catharticum 0.105295567 0.017515052
## Lolium.perenne 0.125000000 0.000000000
## Lophocolea.semiteres 0.031250000 0.000000000
## Lotus.corniculatus 0.151055509 0.348983920
## Luzula.multiflora 0.031250000 0.000000000
## Lysimachia.maritima 0.028698980 0.009070295
## Medicago.lupulina 0.072492250 0.050388741
## Myosotis.arvensis 0.101047904 0.021290752
## Ononis.repens 0.214229496 0.002296129
## Oxalis.acetosella 0.031250000 0.000000000
## Pastinaca.sativa 0.031250000 0.000000000
## Pentaglottis.sempervirens 0.031250000 0.000000000
## Pillosella.officinarum 0.015118049 0.781382764
## Plantago.coronopus 0.026444857 0.128196065
## Plantago.lanceolata 0.175873621 0.145734805
## Pleurozium.schreberi 0.125000000 0.000000000
## Poa.annua 0.023144007 0.069966210
## Poa.spp. 0.031250000 0.000000000
## Polytrichum.commune 0.031250000 0.000000000
## Polytrichum.commune.agg. 0.031250000 0.000000000
## Polytrichum.formosum 0.031250000 0.000000000
## Potentilla.reptans 0.080175339 0.016088487
## Prunella.vulgaris 0.156250000 0.000000000
## Pseudoscleropidum.purum 0.101226390 0.059694532
## Pteridium.aquilinum 0.093750000 0.000000000
## Ranunculus.acris 0.031250000 0.000000000
## Ranunculus.repens 0.093750000 0.000000000
## Reseda.lutea 0.031250000 0.000000000
## Rhinanthus.minor 0.031250000 0.000000000
## Rhizomnium.punctatum 0.031250000 0.000000000
## Rhytidadelphus.squarrosus 0.406250000 0.000000000
## Rhytidadelphus.triquetris 0.062500000 0.000000000
## Rubus.fruticosus 0.062500000 0.000000000
## Sanguisorba.minor.spp.minor 0.062500000 0.000000000
## Saniona.uncinata 0.062500000 0.000000000
## Sedum.anglicum 0.031250000 0.000000000
## Senecio.jacobaea 0.062500000 0.000000000
## Senecio.vulgaris 0.000000000 0.111111111
## Sonchus.arvensis 0.031250000 0.000000000
## Stachys.sylvatica 0.062500000 0.000000000
## Stellaria.apetala 0.031250000 0.000000000
## Taraxacum.agg. 0.031366171 0.462618753
## Thuidium.tamariscinum 0.093750000 0.000000000
## Thymus.polytrichus 0.079595201 0.163530238
## Trichostomum.crispulum 0.010626574 0.295549958
## Trifolium.campestre 0.117278839 0.055425652
## Trifolium.dubium 0.008705101 0.080159640
## Trifolium.pratense 0.125000000 0.000000000
## Trifolium.repens 0.156250000 0.000000000
## Trisetum.flavescens 0.086378993 0.008736009
## Tussilago.farfara 0.040028090 0.039950062
## Urtica.diocia 0.125000000 0.000000000
## Veronica.officinalis 0.031250000 0.000000000
## Vicia.sativa 0.031250000 0.000000000
## Viola.riviniana 0.031250000 0.000000000
## Weissia.controversa 0.031250000 0.000000000
## Zygodon.stirtonii 0.031250000 0.000000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 2
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 2
## Bryum.capillare Bryum.spp.
## 1 2
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 2
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 2 2
## Centaurium.erythraea Centaurium.littorale
## 1 2
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 2
## Dicranella.spp. Dicranum.scoparium
## 2 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 2
## Euphrasia.agg Festuca.ovina
## 2 2
## Festuca.rubra Festuca.rubra.agg.
## 2 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 2 2
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 2
## Holcus.spp. Holcus.lanatus
## 2 1
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 2
## Hypnum.cupressiforme Hypnum.imponens
## 2 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 2 2
## Leucanthemum.vulgare Linum.catharticum
## 2 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 2 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 2
## Plantago.coronopus Plantago.lanceolata
## 2 1
## Pleurozium.schreberi Poa.annua
## 1 2
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 2 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 2 1
## Thymus.polytrichus Trichostomum.crispulum
## 2 2
## Trifolium.campestre Trifolium.dubium
## 1 2
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.25000000 0.03125000
## Alchemilla.mollis Alopercus.pratensis
## 0.03125000 0.03125000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.06250000 0.18750000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.07040370 0.09375000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.25000000 0.06250000
## Avenula.pratensis Bellis.perennis
## 0.03125000 0.29506685
## Betula.pubescens Blackstonia.perfoliata
## 0.03125000 0.03125000
## Brachythecium.albicans Brachythecium.glareosum
## 0.03125000 0.03125000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.12500000 0.18750000
## Briza.media Bromus.hordeaceus
## 0.05236700 0.03125000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.03125000 0.07972098
## Bryum.capillare Bryum.spp.
## 0.03125000 0.05599300
## Calliergonella.cupsidata Calypogeia.arguta
## 0.28280387 0.25000000
## Campanula.rotundifolia Carex.distans
## 0.03125000 0.06792174
## Carex.flacca Carex.panicea
## 0.10027985 0.03125000
## Carlina.vulgaris Centaurea.nigra
## 0.40992449 0.07111111
## Centaurium.erythraea Centaurium.littorale
## 0.06250000 0.07376671
## Centaurium.pulchellum Cerastium.fontanum
## 0.03125000 0.14464286
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.03125000 0.03125000
## Cirsium.arvense Cirsium.palustre
## 0.09375000 0.06250000
## Crepis.capillaris Cynosurus.cristatus
## 0.06250000 0.09375000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.18750000 0.06250000
## Danthonia.decumbens Daucus.carrota
## 0.03125000 0.09741248
## Dicranella.spp. Dicranum.scoparium
## 0.11111111 0.15625000
## Epilobium.montanum Equisetum.arvense
## 0.09375000 0.09375000
## Equisteum.variegatum Erigeron.acer
## 0.03125000 0.05115907
## Euphrasia.agg Festuca.ovina
## 0.14158509 0.39878051
## Festuca.rubra Festuca.rubra.agg.
## 0.25021503 0.03125000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.09375000 0.03125000
## Fissidens.dubius Fissidens.exilis
## 0.09741248 0.11111111
## Fragaria.vesca Galium.aparine
## 0.18750000 0.03125000
## Galium.arvense Galium.saxatile
## 0.03125000 0.03125000
## Galium.verum Geum.urbanum
## 0.09190385 0.03125000
## Glechoma.hederacea Helicotrichon.spp.
## 0.03125000 0.03125000
## Heracleum.sphondylium Hieracium.spp.
## 0.09375000 0.11111111
## Holcus.spp. Holcus.lanatus
## 0.31684065 0.23384319
## Holcus.mollis Homalothecium.lutescens
## 0.18750000 0.06250000
## Hylocomium.splendens Hypericum.perforatum
## 0.21875000 0.07229411
## Hypnum.cupressiforme Hypnum.imponens
## 0.14597589 0.03125000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.09375000 0.03125000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.18750000 0.09375000
## Leontodon.hispidus Leontodon.saxatilis
## 0.27829868 0.11111111
## Leucanthemum.vulgare Linum.catharticum
## 0.29506685 0.10529557
## Lolium.perenne Lophocolea.semiteres
## 0.12500000 0.03125000
## Lotus.corniculatus Luzula.multiflora
## 0.34898392 0.03125000
## Lysimachia.maritima Medicago.lupulina
## 0.02869898 0.07249225
## Myosotis.arvensis Ononis.repens
## 0.10104790 0.21422950
## Oxalis.acetosella Pastinaca.sativa
## 0.03125000 0.03125000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.03125000 0.78138276
## Plantago.coronopus Plantago.lanceolata
## 0.12819606 0.17587362
## Pleurozium.schreberi Poa.annua
## 0.12500000 0.06996621
## Poa.spp. Polytrichum.commune
## 0.03125000 0.03125000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.03125000 0.03125000
## Potentilla.reptans Prunella.vulgaris
## 0.08017534 0.15625000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.10122639 0.09375000
## Ranunculus.acris Ranunculus.repens
## 0.03125000 0.09375000
## Reseda.lutea Rhinanthus.minor
## 0.03125000 0.03125000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.03125000 0.40625000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.06250000 0.06250000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.06250000 0.06250000
## Sedum.anglicum Senecio.jacobaea
## 0.03125000 0.06250000
## Senecio.vulgaris Sonchus.arvensis
## 0.11111111 0.03125000
## Stachys.sylvatica Stellaria.apetala
## 0.06250000 0.03125000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.46261875 0.09375000
## Thymus.polytrichus Trichostomum.crispulum
## 0.16353024 0.29554996
## Trifolium.campestre Trifolium.dubium
## 0.11727884 0.08015964
## Trifolium.pratense Trifolium.repens
## 0.12500000 0.15625000
## Trisetum.flavescens Tussilago.farfara
## 0.08637899 0.04002809
## Urtica.diocia Veronica.officinalis
## 0.12500000 0.03125000
## Vicia.sativa Viola.riviniana
## 0.03125000 0.03125000
## Weissia.controversa Zygodon.stirtonii
## 0.03125000 0.03125000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.214 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 0.330
## Anthyllis.vulneraria Aphanes.arvensis
## 0.919 0.729
## Arrhenatherum.elatius Atrichum.undulatum
## 0.217 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.222
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.514 0.329
## Briza.media Bromus.hordeaceus
## 0.874 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 0.882
## Bryum.capillare Bryum.spp.
## 1.000 0.874
## Calliergonella.cupsidata Calypogeia.arguta
## 0.408 0.220
## Campanula.rotundifolia Carex.distans
## 1.000 0.393
## Carex.flacca Carex.panicea
## 0.889 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.018 0.369
## Centaurium.erythraea Centaurium.littorale
## 0.824 0.669
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.681
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 0.583 1.000
## Crepis.capillaris Cynosurus.cristatus
## 0.824 0.742
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.363 0.841
## Danthonia.decumbens Daucus.carrota
## 1.000 0.260
## Dicranella.spp. Dicranum.scoparium
## 0.214 0.445
## Epilobium.montanum Equisetum.arvense
## 0.720 0.727
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.878 0.010
## Festuca.rubra Festuca.rubra.agg.
## 0.550 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.722 1.000
## Fissidens.dubius Fissidens.exilis
## 0.236 0.198
## Fragaria.vesca Galium.aparine
## 0.296 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 0.632 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 0.695 0.239
## Holcus.spp. Holcus.lanatus
## 0.611 0.482
## Holcus.mollis Homalothecium.lutescens
## 0.377 0.823
## Hylocomium.splendens Hypericum.perforatum
## 0.241 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 0.800 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.707 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.286 0.619
## Leontodon.hispidus Leontodon.saxatilis
## 0.038 0.222
## Leucanthemum.vulgare Linum.catharticum
## 0.362 0.627
## Lolium.perenne Lophocolea.semiteres
## 0.469 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.332 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 0.639 0.423
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.001
## Plantago.coronopus Plantago.lanceolata
## 0.176 0.865
## Pleurozium.schreberi Poa.annua
## 0.552 0.860
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 0.798 0.418
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1.000 0.570
## Ranunculus.acris Ranunculus.repens
## 1.000 0.697
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.057
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 0.806
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.810 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 0.226 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.009 0.578
## Thymus.polytrichus Trichostomum.crispulum
## 0.580 0.021
## Trifolium.campestre Trifolium.dubium
## 0.768 0.386
## Trifolium.pratense Trifolium.repens
## 0.472 0.389
## Trisetum.flavescens Tussilago.farfara
## 0.908 1.000
## Urtica.diocia Veronica.officinalis
## 0.532 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#This time, for Gehlenite, the Pilosella officinarum has a high indval value of 0.781 and a #low p value, of 0.002. Therefore, Pilosella officinarum is reported as the indicator species #for Gehlenite.
#Doing an indval analysis for Albite…
clustAlbite <-cut(PlantChemistry1$Albite, 5, labels=FALSE)
AlbiteIndval <- indval(as.matrix(PlantSpecies1), clustAlbite, type= "long")
gr <- AlbiteIndval$maxcls[AlbiteIndval$pval<=0.05]
iv <- AlbiteIndval$indcls[AlbiteIndval$pval<=0.05]
pv <- AlbiteIndval$pval[AlbiteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[AlbiteIndval$pval<=0.05]
AlbiteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
AlbiteIndvalsummary <- AlbiteIndvalsummary[order(AlbiteIndvalsummary$group,
-AlbiteIndvalsummary$indval),]
print(AlbiteIndvalsummary)
## group indval pvalue freq
## Trifolium.campestre 2 0.5551129 0.025 2
summary(indval(as.matrix(PlantSpecies1), clustAlbite))
## cluster indicator_value probability
## Trifolium.campestre 2 0.5551 0.029
##
## Sum of probabilities = 117.368
##
## Sum of Indicator Values = 17.01
##
## Sum of Significant Indicator Values = 0.56
##
## Number of Significant Indicators = 1
##
## Significant Indicator Distribution
##
## 2
## 1
print(indval(as.matrix(PlantSpecies1), clustAlbite))
## $relfrq
## 1 5
## Agrostis.spp. 0.21052632 0.0000000
## Agrostis.canina 0.02631579 0.0000000
## Alchemilla.mollis 0.02631579 0.0000000
## Alopercus.pratensis 0.02631579 0.0000000
## Angelica.sylvestris 0.05263158 0.0000000
## Anthoxanthum.odoratum 0.13157895 0.3333333
## Anthyllis.vulneraria 0.10526316 0.3333333
## Aphanes.arvensis 0.07894737 0.0000000
## Arrhenatherum.elatius 0.21052632 0.0000000
## Atrichum.undulatum 0.05263158 0.0000000
## Avenula.pratensis 0.02631579 0.0000000
## Bellis.perennis 0.28947368 0.3333333
## Betula.pubescens 0.02631579 0.0000000
## Blackstonia.perfoliata 0.02631579 0.0000000
## Brachythecium.albicans 0.02631579 0.0000000
## Brachythecium.glareosum 0.02631579 0.0000000
## Brachythecium.mildeanum 0.07894737 0.3333333
## Brachythecium.rutabulum 0.15789474 0.0000000
## Briza.media 0.05263158 0.3333333
## Bromus.hordeaceus 0.02631579 0.0000000
## Bryum.c.f..caespiticium 0.02631579 0.0000000
## Bryum.c.f..pallescens 0.07894737 0.0000000
## Bryum.capillare 0.02631579 0.0000000
## Bryum.spp. 0.07894737 0.0000000
## Calliergonella.cupsidata 0.36842105 0.3333333
## Calypogeia.arguta 0.21052632 0.0000000
## Campanula.rotundifolia 0.00000000 0.3333333
## Carex.distans 0.02631579 0.3333333
## Carex.flacca 0.18421053 0.0000000
## Carex.panicea 0.02631579 0.0000000
## Carlina.vulgaris 0.23684211 0.3333333
## Centaurea.nigra 0.05263158 0.0000000
## Centaurium.erythraea 0.05263158 0.0000000
## Centaurium.littorale 0.07894737 0.3333333
## Centaurium.pulchellum 0.00000000 0.3333333
## Cerastium.fontanum 0.13157895 0.6666667
## Chamaenerion.angustifolium 0.02631579 0.0000000
## Cirriphyllum.piliferum 0.02631579 0.0000000
## Cirsium.arvense 0.07894737 0.0000000
## Cirsium.palustre 0.05263158 0.0000000
## Crepis.capillaris 0.05263158 0.0000000
## Cynosurus.cristatus 0.07894737 0.0000000
## Dactylis.glomerata 0.15789474 0.0000000
## Dactylorhiza.fuchsii 0.05263158 0.0000000
## Danthonia.decumbens 0.02631579 0.0000000
## Daucus.carrota 0.05263158 0.0000000
## Dicranella.spp. 0.02631579 0.0000000
## Dicranum.scoparium 0.13157895 0.0000000
## Epilobium.montanum 0.07894737 0.0000000
## Equisetum.arvense 0.05263158 0.3333333
## Equisteum.variegatum 0.00000000 0.3333333
## Erigeron.acer 0.05263158 0.0000000
## Euphrasia.agg 0.26315789 0.3333333
## Festuca.ovina 0.15789474 0.3333333
## Festuca.rubra 0.34210526 0.6666667
## Festuca.rubra.agg. 0.02631579 0.0000000
## Filipendula.ulmaria 0.07894737 0.0000000
## Fissidens.adianthoides 0.02631579 0.0000000
## Fissidens.dubius 0.05263158 0.0000000
## Fissidens.exilis 0.02631579 0.0000000
## Fragaria.vesca 0.15789474 0.0000000
## Galium.aparine 0.02631579 0.0000000
## Galium.arvense 0.02631579 0.0000000
## Galium.saxatile 0.02631579 0.0000000
## Galium.verum 0.07894737 0.3333333
## Geum.urbanum 0.02631579 0.0000000
## Glechoma.hederacea 0.02631579 0.0000000
## Helicotrichon.spp. 0.02631579 0.0000000
## Heracleum.sphondylium 0.07894737 0.0000000
## Hieracium.spp. 0.02631579 0.0000000
## Holcus.spp. 0.52631579 0.3333333
## Holcus.lanatus 0.26315789 0.6666667
## Holcus.mollis 0.15789474 0.0000000
## Homalothecium.lutescens 0.05263158 0.0000000
## Hylocomium.splendens 0.18421053 0.0000000
## Hypericum.perforatum 0.15789474 0.0000000
## Hypnum.cupressiforme 0.23684211 0.3333333
## Hypnum.imponens 0.02631579 0.0000000
## Hypnum.jutlandicum 0.07894737 0.0000000
## Hypochaeris.radicata 0.02631579 0.0000000
## Kindbergia.praelonga 0.15789474 0.0000000
## Lathyrus.pratensis 0.07894737 0.0000000
## Leontodon.hispidus 0.13157895 0.0000000
## Leontodon.saxatilis 0.02631579 0.0000000
## Leucanthemum.vulgare 0.34210526 0.3333333
## Linum.catharticum 0.13157895 0.0000000
## Lolium.perenne 0.10526316 0.0000000
## Lophocolea.semiteres 0.02631579 0.0000000
## Lotus.corniculatus 0.44736842 0.3333333
## Luzula.multiflora 0.02631579 0.0000000
## Lysimachia.maritima 0.02631579 0.3333333
## Medicago.lupulina 0.10526316 0.3333333
## Myosotis.arvensis 0.13157895 0.0000000
## Ononis.repens 0.18421053 0.3333333
## Oxalis.acetosella 0.02631579 0.0000000
## Pastinaca.sativa 0.02631579 0.0000000
## Pentaglottis.sempervirens 0.02631579 0.0000000
## Pillosella.officinarum 0.28947368 0.3333333
## Plantago.coronopus 0.07894737 0.3333333
## Plantago.lanceolata 0.31578947 0.3333333
## Pleurozium.schreberi 0.10526316 0.0000000
## Poa.annua 0.07894737 0.0000000
## Poa.spp. 0.02631579 0.0000000
## Polytrichum.commune 0.02631579 0.0000000
## Polytrichum.commune.agg. 0.02631579 0.0000000
## Polytrichum.formosum 0.02631579 0.0000000
## Potentilla.reptans 0.10526316 0.0000000
## Prunella.vulgaris 0.13157895 0.0000000
## Pseudoscleropidum.purum 0.18421053 0.3333333
## Pteridium.aquilinum 0.07894737 0.0000000
## Ranunculus.acris 0.02631579 0.0000000
## Ranunculus.repens 0.07894737 0.0000000
## Reseda.lutea 0.02631579 0.0000000
## Rhinanthus.minor 0.02631579 0.0000000
## Rhizomnium.punctatum 0.02631579 0.0000000
## Rhytidadelphus.squarrosus 0.34210526 0.0000000
## Rhytidadelphus.triquetris 0.05263158 0.0000000
## Rubus.fruticosus 0.05263158 0.0000000
## Sanguisorba.minor.spp.minor 0.02631579 0.3333333
## Saniona.uncinata 0.05263158 0.0000000
## Sedum.anglicum 0.02631579 0.0000000
## Senecio.jacobaea 0.05263158 0.0000000
## Senecio.vulgaris 0.02631579 0.0000000
## Sonchus.arvensis 0.02631579 0.0000000
## Stachys.sylvatica 0.05263158 0.0000000
## Stellaria.apetala 0.02631579 0.0000000
## Taraxacum.agg. 0.26315789 0.3333333
## Thuidium.tamariscinum 0.07894737 0.0000000
## Thymus.polytrichus 0.21052632 0.0000000
## Trichostomum.crispulum 0.15789474 0.0000000
## Trifolium.campestre 0.13157895 0.6666667
## Trifolium.dubium 0.05263158 0.0000000
## Trifolium.pratense 0.10526316 0.0000000
## Trifolium.repens 0.10526316 0.3333333
## Trisetum.flavescens 0.10526316 0.0000000
## Tussilago.farfara 0.07894737 0.0000000
## Urtica.diocia 0.10526316 0.0000000
## Veronica.officinalis 0.02631579 0.0000000
## Vicia.sativa 0.02631579 0.0000000
## Viola.riviniana 0.02631579 0.0000000
## Weissia.controversa 0.02631579 0.0000000
## Zygodon.stirtonii 0.02631579 0.0000000
##
## $relabu
## 1 5
## Agrostis.spp. 1.000000000 0.00000000
## Agrostis.canina 1.000000000 0.00000000
## Alchemilla.mollis 1.000000000 0.00000000
## Alopercus.pratensis 1.000000000 0.00000000
## Angelica.sylvestris 1.000000000 0.00000000
## Anthoxanthum.odoratum 0.733466934 0.26653307
## Anthyllis.vulneraria 0.154964104 0.84503590
## Aphanes.arvensis 1.000000000 0.00000000
## Arrhenatherum.elatius 1.000000000 0.00000000
## Atrichum.undulatum 1.000000000 0.00000000
## Avenula.pratensis 1.000000000 0.00000000
## Bellis.perennis 0.844897959 0.15510204
## Betula.pubescens 1.000000000 0.00000000
## Blackstonia.perfoliata 1.000000000 0.00000000
## Brachythecium.albicans 1.000000000 0.00000000
## Brachythecium.glareosum 1.000000000 0.00000000
## Brachythecium.mildeanum 0.486486486 0.51351351
## Brachythecium.rutabulum 1.000000000 0.00000000
## Briza.media 0.009631728 0.99036827
## Bromus.hordeaceus 1.000000000 0.00000000
## Bryum.c.f..caespiticium 1.000000000 0.00000000
## Bryum.c.f..pallescens 1.000000000 0.00000000
## Bryum.capillare 1.000000000 0.00000000
## Bryum.spp. 1.000000000 0.00000000
## Calliergonella.cupsidata 0.776470588 0.22352941
## Calypogeia.arguta 1.000000000 0.00000000
## Campanula.rotundifolia 0.000000000 1.00000000
## Carex.distans 0.033740831 0.96625917
## Carex.flacca 1.000000000 0.00000000
## Carex.panicea 1.000000000 0.00000000
## Carlina.vulgaris 0.512820513 0.48717949
## Centaurea.nigra 1.000000000 0.00000000
## Centaurium.erythraea 1.000000000 0.00000000
## Centaurium.littorale 0.164835165 0.83516484
## Centaurium.pulchellum 0.000000000 1.00000000
## Cerastium.fontanum 0.302752294 0.69724771
## Chamaenerion.angustifolium 1.000000000 0.00000000
## Cirriphyllum.piliferum 1.000000000 0.00000000
## Cirsium.arvense 1.000000000 0.00000000
## Cirsium.palustre 1.000000000 0.00000000
## Crepis.capillaris 1.000000000 0.00000000
## Cynosurus.cristatus 1.000000000 0.00000000
## Dactylis.glomerata 1.000000000 0.00000000
## Dactylorhiza.fuchsii 1.000000000 0.00000000
## Danthonia.decumbens 1.000000000 0.00000000
## Daucus.carrota 1.000000000 0.00000000
## Dicranella.spp. 1.000000000 0.00000000
## Dicranum.scoparium 1.000000000 0.00000000
## Epilobium.montanum 1.000000000 0.00000000
## Equisetum.arvense 0.294990724 0.70500928
## Equisteum.variegatum 0.000000000 1.00000000
## Erigeron.acer 1.000000000 0.00000000
## Euphrasia.agg 0.376318875 0.62368113
## Festuca.ovina 0.351978172 0.64802183
## Festuca.rubra 0.907542579 0.09245742
## Festuca.rubra.agg. 1.000000000 0.00000000
## Filipendula.ulmaria 1.000000000 0.00000000
## Fissidens.adianthoides 1.000000000 0.00000000
## Fissidens.dubius 1.000000000 0.00000000
## Fissidens.exilis 1.000000000 0.00000000
## Fragaria.vesca 1.000000000 0.00000000
## Galium.aparine 1.000000000 0.00000000
## Galium.arvense 1.000000000 0.00000000
## Galium.saxatile 1.000000000 0.00000000
## Galium.verum 0.074709463 0.92529054
## Geum.urbanum 1.000000000 0.00000000
## Glechoma.hederacea 1.000000000 0.00000000
## Helicotrichon.spp. 1.000000000 0.00000000
## Heracleum.sphondylium 1.000000000 0.00000000
## Hieracium.spp. 1.000000000 0.00000000
## Holcus.spp. 0.837553436 0.16244656
## Holcus.lanatus 0.479827089 0.52017291
## Holcus.mollis 1.000000000 0.00000000
## Homalothecium.lutescens 1.000000000 0.00000000
## Hylocomium.splendens 1.000000000 0.00000000
## Hypericum.perforatum 1.000000000 0.00000000
## Hypnum.cupressiforme 0.178378378 0.82162162
## Hypnum.imponens 1.000000000 0.00000000
## Hypnum.jutlandicum 1.000000000 0.00000000
## Hypochaeris.radicata 1.000000000 0.00000000
## Kindbergia.praelonga 1.000000000 0.00000000
## Lathyrus.pratensis 1.000000000 0.00000000
## Leontodon.hispidus 1.000000000 0.00000000
## Leontodon.saxatilis 1.000000000 0.00000000
## Leucanthemum.vulgare 0.884498480 0.11550152
## Linum.catharticum 1.000000000 0.00000000
## Lolium.perenne 1.000000000 0.00000000
## Lophocolea.semiteres 1.000000000 0.00000000
## Lotus.corniculatus 0.812961444 0.18703856
## Luzula.multiflora 1.000000000 0.00000000
## Lysimachia.maritima 0.001969796 0.99803020
## Medicago.lupulina 0.012000000 0.98800000
## Myosotis.arvensis 1.000000000 0.00000000
## Ononis.repens 0.139534884 0.86046512
## Oxalis.acetosella 1.000000000 0.00000000
## Pastinaca.sativa 1.000000000 0.00000000
## Pentaglottis.sempervirens 1.000000000 0.00000000
## Pillosella.officinarum 0.285241835 0.71475816
## Plantago.coronopus 0.046235139 0.95376486
## Plantago.lanceolata 0.688524590 0.31147541
## Pleurozium.schreberi 1.000000000 0.00000000
## Poa.annua 1.000000000 0.00000000
## Poa.spp. 1.000000000 0.00000000
## Polytrichum.commune 1.000000000 0.00000000
## Polytrichum.commune.agg. 1.000000000 0.00000000
## Polytrichum.formosum 1.000000000 0.00000000
## Potentilla.reptans 1.000000000 0.00000000
## Prunella.vulgaris 1.000000000 0.00000000
## Pseudoscleropidum.purum 0.713207547 0.28679245
## Pteridium.aquilinum 1.000000000 0.00000000
## Ranunculus.acris 1.000000000 0.00000000
## Ranunculus.repens 1.000000000 0.00000000
## Reseda.lutea 1.000000000 0.00000000
## Rhinanthus.minor 1.000000000 0.00000000
## Rhizomnium.punctatum 1.000000000 0.00000000
## Rhytidadelphus.squarrosus 1.000000000 0.00000000
## Rhytidadelphus.triquetris 1.000000000 0.00000000
## Rubus.fruticosus 1.000000000 0.00000000
## Sanguisorba.minor.spp.minor 0.211618257 0.78838174
## Saniona.uncinata 1.000000000 0.00000000
## Sedum.anglicum 1.000000000 0.00000000
## Senecio.jacobaea 1.000000000 0.00000000
## Senecio.vulgaris 1.000000000 0.00000000
## Sonchus.arvensis 1.000000000 0.00000000
## Stachys.sylvatica 1.000000000 0.00000000
## Stellaria.apetala 1.000000000 0.00000000
## Taraxacum.agg. 0.644859813 0.35514019
## Thuidium.tamariscinum 1.000000000 0.00000000
## Thymus.polytrichus 1.000000000 0.00000000
## Trichostomum.crispulum 1.000000000 0.00000000
## Trifolium.campestre 0.167330677 0.83266932
## Trifolium.dubium 1.000000000 0.00000000
## Trifolium.pratense 1.000000000 0.00000000
## Trifolium.repens 0.525000000 0.47500000
## Trisetum.flavescens 1.000000000 0.00000000
## Tussilago.farfara 1.000000000 0.00000000
## Urtica.diocia 1.000000000 0.00000000
## Veronica.officinalis 1.000000000 0.00000000
## Vicia.sativa 1.000000000 0.00000000
## Viola.riviniana 1.000000000 0.00000000
## Weissia.controversa 1.000000000 0.00000000
## Zygodon.stirtonii 1.000000000 0.00000000
##
## $indval
## 1 5
## Agrostis.spp. 2.105263e-01 0.00000000
## Agrostis.canina 2.631579e-02 0.00000000
## Alchemilla.mollis 2.631579e-02 0.00000000
## Alopercus.pratensis 2.631579e-02 0.00000000
## Angelica.sylvestris 5.263158e-02 0.00000000
## Anthoxanthum.odoratum 9.650881e-02 0.08884436
## Anthyllis.vulneraria 1.631201e-02 0.28167863
## Aphanes.arvensis 7.894737e-02 0.00000000
## Arrhenatherum.elatius 2.105263e-01 0.00000000
## Atrichum.undulatum 5.263158e-02 0.00000000
## Avenula.pratensis 2.631579e-02 0.00000000
## Bellis.perennis 2.445757e-01 0.05170068
## Betula.pubescens 2.631579e-02 0.00000000
## Blackstonia.perfoliata 2.631579e-02 0.00000000
## Brachythecium.albicans 2.631579e-02 0.00000000
## Brachythecium.glareosum 2.631579e-02 0.00000000
## Brachythecium.mildeanum 3.840683e-02 0.17117117
## Brachythecium.rutabulum 1.578947e-01 0.00000000
## Briza.media 5.069331e-04 0.33012276
## Bromus.hordeaceus 2.631579e-02 0.00000000
## Bryum.c.f..caespiticium 2.631579e-02 0.00000000
## Bryum.c.f..pallescens 7.894737e-02 0.00000000
## Bryum.capillare 2.631579e-02 0.00000000
## Bryum.spp. 7.894737e-02 0.00000000
## Calliergonella.cupsidata 2.860681e-01 0.07450980
## Calypogeia.arguta 2.105263e-01 0.00000000
## Campanula.rotundifolia 0.000000e+00 0.33333333
## Carex.distans 8.879166e-04 0.32208639
## Carex.flacca 1.842105e-01 0.00000000
## Carex.panicea 2.631579e-02 0.00000000
## Carlina.vulgaris 1.214575e-01 0.16239316
## Centaurea.nigra 5.263158e-02 0.00000000
## Centaurium.erythraea 5.263158e-02 0.00000000
## Centaurium.littorale 1.301330e-02 0.27838828
## Centaurium.pulchellum 0.000000e+00 0.33333333
## Cerastium.fontanum 3.983583e-02 0.46483180
## Chamaenerion.angustifolium 2.631579e-02 0.00000000
## Cirriphyllum.piliferum 2.631579e-02 0.00000000
## Cirsium.arvense 7.894737e-02 0.00000000
## Cirsium.palustre 5.263158e-02 0.00000000
## Crepis.capillaris 5.263158e-02 0.00000000
## Cynosurus.cristatus 7.894737e-02 0.00000000
## Dactylis.glomerata 1.578947e-01 0.00000000
## Dactylorhiza.fuchsii 5.263158e-02 0.00000000
## Danthonia.decumbens 2.631579e-02 0.00000000
## Daucus.carrota 5.263158e-02 0.00000000
## Dicranella.spp. 2.631579e-02 0.00000000
## Dicranum.scoparium 1.315789e-01 0.00000000
## Epilobium.montanum 7.894737e-02 0.00000000
## Equisetum.arvense 1.552583e-02 0.23500309
## Equisteum.variegatum 0.000000e+00 0.33333333
## Erigeron.acer 5.263158e-02 0.00000000
## Euphrasia.agg 9.903128e-02 0.20789371
## Festuca.ovina 5.557550e-02 0.21600728
## Festuca.rubra 3.104751e-01 0.06163828
## Festuca.rubra.agg. 2.631579e-02 0.00000000
## Filipendula.ulmaria 7.894737e-02 0.00000000
## Fissidens.adianthoides 2.631579e-02 0.00000000
## Fissidens.dubius 5.263158e-02 0.00000000
## Fissidens.exilis 2.631579e-02 0.00000000
## Fragaria.vesca 1.578947e-01 0.00000000
## Galium.aparine 2.631579e-02 0.00000000
## Galium.arvense 2.631579e-02 0.00000000
## Galium.saxatile 2.631579e-02 0.00000000
## Galium.verum 5.898116e-03 0.30843018
## Geum.urbanum 2.631579e-02 0.00000000
## Glechoma.hederacea 2.631579e-02 0.00000000
## Helicotrichon.spp. 2.631579e-02 0.00000000
## Heracleum.sphondylium 7.894737e-02 0.00000000
## Hieracium.spp. 2.631579e-02 0.00000000
## Holcus.spp. 4.408176e-01 0.05414885
## Holcus.lanatus 1.262703e-01 0.34678194
## Holcus.mollis 1.578947e-01 0.00000000
## Homalothecium.lutescens 5.263158e-02 0.00000000
## Hylocomium.splendens 1.842105e-01 0.00000000
## Hypericum.perforatum 1.578947e-01 0.00000000
## Hypnum.cupressiforme 4.224751e-02 0.27387387
## Hypnum.imponens 2.631579e-02 0.00000000
## Hypnum.jutlandicum 7.894737e-02 0.00000000
## Hypochaeris.radicata 2.631579e-02 0.00000000
## Kindbergia.praelonga 1.578947e-01 0.00000000
## Lathyrus.pratensis 7.894737e-02 0.00000000
## Leontodon.hispidus 1.315789e-01 0.00000000
## Leontodon.saxatilis 2.631579e-02 0.00000000
## Leucanthemum.vulgare 3.025916e-01 0.03850051
## Linum.catharticum 1.315789e-01 0.00000000
## Lolium.perenne 1.052632e-01 0.00000000
## Lophocolea.semiteres 2.631579e-02 0.00000000
## Lotus.corniculatus 3.636933e-01 0.06234619
## Luzula.multiflora 2.631579e-02 0.00000000
## Lysimachia.maritima 5.183675e-05 0.33267673
## Medicago.lupulina 1.263158e-03 0.32933333
## Myosotis.arvensis 1.315789e-01 0.00000000
## Ononis.repens 2.570379e-02 0.28682171
## Oxalis.acetosella 2.631579e-02 0.00000000
## Pastinaca.sativa 2.631579e-02 0.00000000
## Pentaglottis.sempervirens 2.631579e-02 0.00000000
## Pillosella.officinarum 8.257001e-02 0.23825272
## Plantago.coronopus 3.650143e-03 0.31792162
## Plantago.lanceolata 2.174288e-01 0.10382514
## Pleurozium.schreberi 1.052632e-01 0.00000000
## Poa.annua 7.894737e-02 0.00000000
## Poa.spp. 2.631579e-02 0.00000000
## Polytrichum.commune 2.631579e-02 0.00000000
## Polytrichum.commune.agg. 2.631579e-02 0.00000000
## Polytrichum.formosum 2.631579e-02 0.00000000
## Potentilla.reptans 1.052632e-01 0.00000000
## Prunella.vulgaris 1.315789e-01 0.00000000
## Pseudoscleropidum.purum 1.313803e-01 0.09559748
## Pteridium.aquilinum 7.894737e-02 0.00000000
## Ranunculus.acris 2.631579e-02 0.00000000
## Ranunculus.repens 7.894737e-02 0.00000000
## Reseda.lutea 2.631579e-02 0.00000000
## Rhinanthus.minor 2.631579e-02 0.00000000
## Rhizomnium.punctatum 2.631579e-02 0.00000000
## Rhytidadelphus.squarrosus 3.421053e-01 0.00000000
## Rhytidadelphus.triquetris 5.263158e-02 0.00000000
## Rubus.fruticosus 5.263158e-02 0.00000000
## Sanguisorba.minor.spp.minor 5.568902e-03 0.26279391
## Saniona.uncinata 5.263158e-02 0.00000000
## Sedum.anglicum 2.631579e-02 0.00000000
## Senecio.jacobaea 5.263158e-02 0.00000000
## Senecio.vulgaris 2.631579e-02 0.00000000
## Sonchus.arvensis 2.631579e-02 0.00000000
## Stachys.sylvatica 5.263158e-02 0.00000000
## Stellaria.apetala 2.631579e-02 0.00000000
## Taraxacum.agg. 1.697000e-01 0.11838006
## Thuidium.tamariscinum 7.894737e-02 0.00000000
## Thymus.polytrichus 2.105263e-01 0.00000000
## Trichostomum.crispulum 1.578947e-01 0.00000000
## Trifolium.campestre 2.201719e-02 0.55511288
## Trifolium.dubium 5.263158e-02 0.00000000
## Trifolium.pratense 1.052632e-01 0.00000000
## Trifolium.repens 5.526316e-02 0.15833333
## Trisetum.flavescens 1.052632e-01 0.00000000
## Tussilago.farfara 7.894737e-02 0.00000000
## Urtica.diocia 1.052632e-01 0.00000000
## Veronica.officinalis 2.631579e-02 0.00000000
## Vicia.sativa 2.631579e-02 0.00000000
## Viola.riviniana 2.631579e-02 0.00000000
## Weissia.controversa 2.631579e-02 0.00000000
## Zygodon.stirtonii 2.631579e-02 0.00000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 2 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 2 1
## Briza.media Bromus.hordeaceus
## 2 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 2 2
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 2 1
## Centaurium.erythraea Centaurium.littorale
## 1 2
## Centaurium.pulchellum Cerastium.fontanum
## 2 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 2
## Equisteum.variegatum Erigeron.acer
## 2 1
## Euphrasia.agg Festuca.ovina
## 2 2
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 2 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 2
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 2 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 2 2
## Myosotis.arvensis Ononis.repens
## 1 2
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 2
## Plantago.coronopus Plantago.lanceolata
## 2 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 2 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 2 1
## Trifolium.pratense Trifolium.repens
## 1 2
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.21052632 0.02631579
## Alchemilla.mollis Alopercus.pratensis
## 0.02631579 0.02631579
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.05263158 0.09650881
## Anthyllis.vulneraria Aphanes.arvensis
## 0.28167863 0.07894737
## Arrhenatherum.elatius Atrichum.undulatum
## 0.21052632 0.05263158
## Avenula.pratensis Bellis.perennis
## 0.02631579 0.24457573
## Betula.pubescens Blackstonia.perfoliata
## 0.02631579 0.02631579
## Brachythecium.albicans Brachythecium.glareosum
## 0.02631579 0.02631579
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.17117117 0.15789474
## Briza.media Bromus.hordeaceus
## 0.33012276 0.02631579
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.02631579 0.07894737
## Bryum.capillare Bryum.spp.
## 0.02631579 0.07894737
## Calliergonella.cupsidata Calypogeia.arguta
## 0.28606811 0.21052632
## Campanula.rotundifolia Carex.distans
## 0.33333333 0.32208639
## Carex.flacca Carex.panicea
## 0.18421053 0.02631579
## Carlina.vulgaris Centaurea.nigra
## 0.16239316 0.05263158
## Centaurium.erythraea Centaurium.littorale
## 0.05263158 0.27838828
## Centaurium.pulchellum Cerastium.fontanum
## 0.33333333 0.46483180
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.02631579 0.02631579
## Cirsium.arvense Cirsium.palustre
## 0.07894737 0.05263158
## Crepis.capillaris Cynosurus.cristatus
## 0.05263158 0.07894737
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.15789474 0.05263158
## Danthonia.decumbens Daucus.carrota
## 0.02631579 0.05263158
## Dicranella.spp. Dicranum.scoparium
## 0.02631579 0.13157895
## Epilobium.montanum Equisetum.arvense
## 0.07894737 0.23500309
## Equisteum.variegatum Erigeron.acer
## 0.33333333 0.05263158
## Euphrasia.agg Festuca.ovina
## 0.20789371 0.21600728
## Festuca.rubra Festuca.rubra.agg.
## 0.31047509 0.02631579
## Filipendula.ulmaria Fissidens.adianthoides
## 0.07894737 0.02631579
## Fissidens.dubius Fissidens.exilis
## 0.05263158 0.02631579
## Fragaria.vesca Galium.aparine
## 0.15789474 0.02631579
## Galium.arvense Galium.saxatile
## 0.02631579 0.02631579
## Galium.verum Geum.urbanum
## 0.30843018 0.02631579
## Glechoma.hederacea Helicotrichon.spp.
## 0.02631579 0.02631579
## Heracleum.sphondylium Hieracium.spp.
## 0.07894737 0.02631579
## Holcus.spp. Holcus.lanatus
## 0.44081760 0.34678194
## Holcus.mollis Homalothecium.lutescens
## 0.15789474 0.05263158
## Hylocomium.splendens Hypericum.perforatum
## 0.18421053 0.15789474
## Hypnum.cupressiforme Hypnum.imponens
## 0.27387387 0.02631579
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.07894737 0.02631579
## Kindbergia.praelonga Lathyrus.pratensis
## 0.15789474 0.07894737
## Leontodon.hispidus Leontodon.saxatilis
## 0.13157895 0.02631579
## Leucanthemum.vulgare Linum.catharticum
## 0.30259159 0.13157895
## Lolium.perenne Lophocolea.semiteres
## 0.10526316 0.02631579
## Lotus.corniculatus Luzula.multiflora
## 0.36369328 0.02631579
## Lysimachia.maritima Medicago.lupulina
## 0.33267673 0.32933333
## Myosotis.arvensis Ononis.repens
## 0.13157895 0.28682171
## Oxalis.acetosella Pastinaca.sativa
## 0.02631579 0.02631579
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.02631579 0.23825272
## Plantago.coronopus Plantago.lanceolata
## 0.31792162 0.21742882
## Pleurozium.schreberi Poa.annua
## 0.10526316 0.07894737
## Poa.spp. Polytrichum.commune
## 0.02631579 0.02631579
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.02631579 0.02631579
## Potentilla.reptans Prunella.vulgaris
## 0.10526316 0.13157895
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.13138034 0.07894737
## Ranunculus.acris Ranunculus.repens
## 0.02631579 0.07894737
## Reseda.lutea Rhinanthus.minor
## 0.02631579 0.02631579
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.02631579 0.34210526
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.05263158 0.05263158
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.26279391 0.05263158
## Sedum.anglicum Senecio.jacobaea
## 0.02631579 0.05263158
## Senecio.vulgaris Sonchus.arvensis
## 0.02631579 0.02631579
## Stachys.sylvatica Stellaria.apetala
## 0.05263158 0.02631579
## Taraxacum.agg. Thuidium.tamariscinum
## 0.16969995 0.07894737
## Thymus.polytrichus Trichostomum.crispulum
## 0.21052632 0.15789474
## Trifolium.campestre Trifolium.dubium
## 0.55511288 0.05263158
## Trifolium.pratense Trifolium.repens
## 0.10526316 0.15833333
## Trisetum.flavescens Tussilago.farfara
## 0.10526316 0.07894737
## Urtica.diocia Veronica.officinalis
## 0.10526316 0.02631579
## Vicia.sativa Viola.riviniana
## 0.02631579 0.02631579
## Weissia.controversa Zygodon.stirtonii
## 0.02631579 0.02631579
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.786 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.142 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.683 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.663
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.212 1.000
## Briza.media Bromus.hordeaceus
## 0.094 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.641 0.814
## Campanula.rotundifolia Carex.distans
## 0.071 0.081
## Carex.flacca Carex.panicea
## 0.776 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.911 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 0.221
## Centaurium.pulchellum Cerastium.fontanum
## 0.075 0.069
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.832 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 0.136
## Equisteum.variegatum Erigeron.acer
## 0.076 1.000
## Euphrasia.agg Festuca.ovina
## 0.831 0.284
## Festuca.rubra Festuca.rubra.agg.
## 0.600 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 0.943 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 0.064 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.419 0.173
## Holcus.mollis Homalothecium.lutescens
## 0.820 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.899 0.830
## Hypnum.cupressiforme Hypnum.imponens
## 0.155 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.893 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 0.943 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.565 1.000
## Lolium.perenne Lophocolea.semiteres
## 0.851 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.590 1.000
## Lysimachia.maritima Medicago.lupulina
## 0.079 0.091
## Myosotis.arvensis Ononis.repens
## 1.000 0.149
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.778
## Plantago.coronopus Plantago.lanceolata
## 0.085 0.886
## Pleurozium.schreberi Poa.annua
## 0.937 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 0.939 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.965 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.516
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.145 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.808 0.957
## Trifolium.campestre Trifolium.dubium
## 0.025 1.000
## Trifolium.pratense Trifolium.repens
## 0.944 0.210
## Trisetum.flavescens Tussilago.farfara
## 0.819 1.000
## Urtica.diocia Veronica.officinalis
## 0.941 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#In the AlbiteIndvalsummary, Trifolium campestre is the only species reported as an #indicator species for albite. Therefore, T. campestre, with an indval value of 0.556 and #a low p value of 0.025 is the indicator species for Albite.
clustKaolinite <-cut(PlantChemistry1$Kaolinite, 5, labels=FALSE)
KaoliniteIndval <- indval(as.matrix(PlantSpecies1), clustKaolinite, type= "long")
gr <- KaoliniteIndval$maxcls[KaoliniteIndval$pval<=0.05]
iv <- KaoliniteIndval$indcls[KaoliniteIndval$pval<=0.05]
pv <- KaoliniteIndval$pval[KaoliniteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[KaoliniteIndval$pval<=0.05]
KaoliniteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
KaoliniteIndvalsummary <- KaoliniteIndvalsummary[order(KaoliniteIndvalsummary$group,
- KaoliniteIndvalsummary$indval),]
print(KaoliniteIndvalsummary)
## group indval pvalue freq
## Taraxacum.agg. 1 0.3666667 0.045 3
## Agrostis.spp. 2 0.4261364 0.004 1
## Cerastium.fontanum 2 0.3276003 0.022 1
## Trifolium.campestre 2 0.3035851 0.047 2
## Cirsium.arvense 2 0.2727273 0.013 2
summary(indval(as.matrix(PlantSpecies1), clustKaolinite))
## cluster indicator_value probability
## Euphrasia.agg 1 0.3667 0.045
## Agrostis.spp. 2 0.4261 0.011
## Cerastium.fontanum 2 0.3276 0.027
## Trifolium.campestre 2 0.3036 0.038
## Cirsium.arvense 2 0.2727 0.013
##
## Sum of probabilities = 87.755
##
## Sum of Indicator Values = 15.9
##
## Sum of Significant Indicator Values = 1.7
##
## Number of Significant Indicators = 5
##
## Significant Indicator Distribution
##
## 1 2
## 1 4
print(indval(as.matrix(PlantSpecies1), clustKaolinite))
## $relfrq
## 1 5
## Agrostis.spp. 0.10000000 0.45454545
## Agrostis.canina 0.00000000 0.09090909
## Alchemilla.mollis 0.00000000 0.09090909
## Alopercus.pratensis 0.03333333 0.00000000
## Angelica.sylvestris 0.00000000 0.18181818
## Anthoxanthum.odoratum 0.16666667 0.09090909
## Anthyllis.vulneraria 0.13333333 0.09090909
## Aphanes.arvensis 0.06666667 0.09090909
## Arrhenatherum.elatius 0.20000000 0.18181818
## Atrichum.undulatum 0.06666667 0.00000000
## Avenula.pratensis 0.03333333 0.00000000
## Bellis.perennis 0.33333333 0.18181818
## Betula.pubescens 0.03333333 0.00000000
## Blackstonia.perfoliata 0.03333333 0.00000000
## Brachythecium.albicans 0.00000000 0.09090909
## Brachythecium.glareosum 0.03333333 0.00000000
## Brachythecium.mildeanum 0.13333333 0.00000000
## Brachythecium.rutabulum 0.10000000 0.27272727
## Briza.media 0.03333333 0.18181818
## Bromus.hordeaceus 0.00000000 0.09090909
## Bryum.c.f..caespiticium 0.03333333 0.00000000
## Bryum.c.f..pallescens 0.10000000 0.00000000
## Bryum.capillare 0.00000000 0.09090909
## Bryum.spp. 0.10000000 0.00000000
## Calliergonella.cupsidata 0.33333333 0.45454545
## Calypogeia.arguta 0.20000000 0.18181818
## Campanula.rotundifolia 0.03333333 0.00000000
## Carex.distans 0.06666667 0.00000000
## Carex.flacca 0.20000000 0.09090909
## Carex.panicea 0.03333333 0.00000000
## Carlina.vulgaris 0.33333333 0.00000000
## Centaurea.nigra 0.06666667 0.00000000
## Centaurium.erythraea 0.06666667 0.00000000
## Centaurium.littorale 0.13333333 0.00000000
## Centaurium.pulchellum 0.03333333 0.00000000
## Cerastium.fontanum 0.10000000 0.36363636
## Chamaenerion.angustifolium 0.03333333 0.00000000
## Cirriphyllum.piliferum 0.03333333 0.00000000
## Cirsium.arvense 0.00000000 0.27272727
## Cirsium.palustre 0.06666667 0.00000000
## Crepis.capillaris 0.06666667 0.00000000
## Cynosurus.cristatus 0.06666667 0.09090909
## Dactylis.glomerata 0.10000000 0.27272727
## Dactylorhiza.fuchsii 0.06666667 0.00000000
## Danthonia.decumbens 0.03333333 0.00000000
## Daucus.carrota 0.03333333 0.09090909
## Dicranella.spp. 0.03333333 0.00000000
## Dicranum.scoparium 0.13333333 0.09090909
## Epilobium.montanum 0.06666667 0.09090909
## Equisetum.arvense 0.03333333 0.18181818
## Equisteum.variegatum 0.03333333 0.00000000
## Erigeron.acer 0.06666667 0.00000000
## Euphrasia.agg 0.36666667 0.00000000
## Festuca.ovina 0.20000000 0.09090909
## Festuca.rubra 0.33333333 0.45454545
## Festuca.rubra.agg. 0.00000000 0.09090909
## Filipendula.ulmaria 0.03333333 0.18181818
## Fissidens.adianthoides 0.03333333 0.00000000
## Fissidens.dubius 0.06666667 0.00000000
## Fissidens.exilis 0.03333333 0.00000000
## Fragaria.vesca 0.13333333 0.18181818
## Galium.aparine 0.00000000 0.09090909
## Galium.arvense 0.00000000 0.09090909
## Galium.saxatile 0.03333333 0.00000000
## Galium.verum 0.06666667 0.18181818
## Geum.urbanum 0.00000000 0.09090909
## Glechoma.hederacea 0.00000000 0.09090909
## Helicotrichon.spp. 0.00000000 0.09090909
## Heracleum.sphondylium 0.06666667 0.09090909
## Hieracium.spp. 0.00000000 0.09090909
## Holcus.spp. 0.53333333 0.45454545
## Holcus.lanatus 0.26666667 0.36363636
## Holcus.mollis 0.10000000 0.27272727
## Homalothecium.lutescens 0.06666667 0.00000000
## Hylocomium.splendens 0.20000000 0.09090909
## Hypericum.perforatum 0.16666667 0.09090909
## Hypnum.cupressiforme 0.30000000 0.09090909
## Hypnum.imponens 0.03333333 0.00000000
## Hypnum.jutlandicum 0.06666667 0.09090909
## Hypochaeris.radicata 0.00000000 0.09090909
## Kindbergia.praelonga 0.13333333 0.18181818
## Lathyrus.pratensis 0.06666667 0.09090909
## Leontodon.hispidus 0.13333333 0.09090909
## Leontodon.saxatilis 0.03333333 0.00000000
## Leucanthemum.vulgare 0.30000000 0.45454545
## Linum.catharticum 0.16666667 0.00000000
## Lolium.perenne 0.06666667 0.18181818
## Lophocolea.semiteres 0.03333333 0.00000000
## Lotus.corniculatus 0.40000000 0.54545455
## Luzula.multiflora 0.03333333 0.00000000
## Lysimachia.maritima 0.06666667 0.00000000
## Medicago.lupulina 0.13333333 0.09090909
## Myosotis.arvensis 0.13333333 0.09090909
## Ononis.repens 0.26666667 0.00000000
## Oxalis.acetosella 0.00000000 0.09090909
## Pastinaca.sativa 0.03333333 0.00000000
## Pentaglottis.sempervirens 0.00000000 0.09090909
## Pillosella.officinarum 0.36666667 0.09090909
## Plantago.coronopus 0.13333333 0.00000000
## Plantago.lanceolata 0.36666667 0.18181818
## Pleurozium.schreberi 0.10000000 0.09090909
## Poa.annua 0.10000000 0.00000000
## Poa.spp. 0.00000000 0.09090909
## Polytrichum.commune 0.03333333 0.00000000
## Polytrichum.commune.agg. 0.03333333 0.00000000
## Polytrichum.formosum 0.00000000 0.09090909
## Potentilla.reptans 0.10000000 0.09090909
## Prunella.vulgaris 0.13333333 0.09090909
## Pseudoscleropidum.purum 0.23333333 0.09090909
## Pteridium.aquilinum 0.06666667 0.09090909
## Ranunculus.acris 0.03333333 0.00000000
## Ranunculus.repens 0.06666667 0.09090909
## Reseda.lutea 0.03333333 0.00000000
## Rhinanthus.minor 0.03333333 0.00000000
## Rhizomnium.punctatum 0.03333333 0.00000000
## Rhytidadelphus.squarrosus 0.36666667 0.18181818
## Rhytidadelphus.triquetris 0.06666667 0.00000000
## Rubus.fruticosus 0.06666667 0.00000000
## Sanguisorba.minor.spp.minor 0.03333333 0.09090909
## Saniona.uncinata 0.06666667 0.00000000
## Sedum.anglicum 0.03333333 0.00000000
## Senecio.jacobaea 0.00000000 0.18181818
## Senecio.vulgaris 0.03333333 0.00000000
## Sonchus.arvensis 0.03333333 0.00000000
## Stachys.sylvatica 0.00000000 0.18181818
## Stellaria.apetala 0.00000000 0.09090909
## Taraxacum.agg. 0.36666667 0.00000000
## Thuidium.tamariscinum 0.10000000 0.00000000
## Thymus.polytrichus 0.26666667 0.00000000
## Trichostomum.crispulum 0.20000000 0.00000000
## Trifolium.campestre 0.10000000 0.36363636
## Trifolium.dubium 0.06666667 0.00000000
## Trifolium.pratense 0.10000000 0.09090909
## Trifolium.repens 0.10000000 0.18181818
## Trisetum.flavescens 0.10000000 0.09090909
## Tussilago.farfara 0.03333333 0.18181818
## Urtica.diocia 0.10000000 0.09090909
## Veronica.officinalis 0.03333333 0.00000000
## Vicia.sativa 0.03333333 0.00000000
## Viola.riviniana 0.03333333 0.00000000
## Weissia.controversa 0.03333333 0.00000000
## Zygodon.stirtonii 0.03333333 0.00000000
##
## $relabu
## 1 5
## Agrostis.spp. 0.06250000 0.93750000
## Agrostis.canina 0.00000000 1.00000000
## Alchemilla.mollis 0.00000000 1.00000000
## Alopercus.pratensis 1.00000000 0.00000000
## Angelica.sylvestris 0.00000000 1.00000000
## Anthoxanthum.odoratum 0.82597486 0.17402514
## Anthyllis.vulneraria 0.81714286 0.18285714
## Aphanes.arvensis 0.85436893 0.14563107
## Arrhenatherum.elatius 0.62264151 0.37735849
## Atrichum.undulatum 1.00000000 0.00000000
## Avenula.pratensis 1.00000000 0.00000000
## Bellis.perennis 0.63927856 0.36072144
## Betula.pubescens 1.00000000 0.00000000
## Blackstonia.perfoliata 1.00000000 0.00000000
## Brachythecium.albicans 0.00000000 1.00000000
## Brachythecium.glareosum 1.00000000 0.00000000
## Brachythecium.mildeanum 1.00000000 0.00000000
## Brachythecium.rutabulum 0.18032787 0.81967213
## Briza.media 0.74852071 0.25147929
## Bromus.hordeaceus 0.00000000 1.00000000
## Bryum.c.f..caespiticium 1.00000000 0.00000000
## Bryum.c.f..pallescens 1.00000000 0.00000000
## Bryum.capillare 0.00000000 1.00000000
## Bryum.spp. 1.00000000 0.00000000
## Calliergonella.cupsidata 0.41101963 0.58898037
## Calypogeia.arguta 0.64125561 0.35874439
## Campanula.rotundifolia 1.00000000 0.00000000
## Carex.distans 1.00000000 0.00000000
## Carex.flacca 0.19445066 0.80554934
## Carex.panicea 1.00000000 0.00000000
## Carlina.vulgaris 1.00000000 0.00000000
## Centaurea.nigra 1.00000000 0.00000000
## Centaurium.erythraea 1.00000000 0.00000000
## Centaurium.littorale 1.00000000 0.00000000
## Centaurium.pulchellum 1.00000000 0.00000000
## Cerastium.fontanum 0.09909910 0.90090090
## Chamaenerion.angustifolium 1.00000000 0.00000000
## Cirriphyllum.piliferum 1.00000000 0.00000000
## Cirsium.arvense 0.00000000 1.00000000
## Cirsium.palustre 1.00000000 0.00000000
## Crepis.capillaris 1.00000000 0.00000000
## Cynosurus.cristatus 0.17389087 0.82610913
## Dactylis.glomerata 0.12506179 0.87493821
## Dactylorhiza.fuchsii 1.00000000 0.00000000
## Danthonia.decumbens 1.00000000 0.00000000
## Daucus.carrota 0.15492958 0.84507042
## Dicranella.spp. 1.00000000 0.00000000
## Dicranum.scoparium 0.66024915 0.33975085
## Epilobium.montanum 0.52380952 0.47619048
## Equisetum.arvense 0.06470588 0.93529412
## Equisteum.variegatum 1.00000000 0.00000000
## Erigeron.acer 1.00000000 0.00000000
## Euphrasia.agg 1.00000000 0.00000000
## Festuca.ovina 0.97278912 0.02721088
## Festuca.rubra 0.34084507 0.65915493
## Festuca.rubra.agg. 0.00000000 1.00000000
## Filipendula.ulmaria 0.62264151 0.37735849
## Fissidens.adianthoides 1.00000000 0.00000000
## Fissidens.dubius 1.00000000 0.00000000
## Fissidens.exilis 1.00000000 0.00000000
## Fragaria.vesca 0.70344967 0.29655033
## Galium.aparine 0.00000000 1.00000000
## Galium.arvense 0.00000000 1.00000000
## Galium.saxatile 1.00000000 0.00000000
## Galium.verum 0.27272727 0.72727273
## Geum.urbanum 0.00000000 1.00000000
## Glechoma.hederacea 0.00000000 1.00000000
## Helicotrichon.spp. 0.00000000 1.00000000
## Heracleum.sphondylium 0.76744186 0.23255814
## Hieracium.spp. 0.00000000 1.00000000
## Holcus.spp. 0.42350184 0.57649816
## Holcus.lanatus 0.29692404 0.70307596
## Holcus.mollis 0.42307692 0.57692308
## Homalothecium.lutescens 1.00000000 0.00000000
## Hylocomium.splendens 0.69662495 0.30337505
## Hypericum.perforatum 0.37931034 0.62068966
## Hypnum.cupressiforme 0.95581738 0.04418262
## Hypnum.imponens 1.00000000 0.00000000
## Hypnum.jutlandicum 0.70443350 0.29556650
## Hypochaeris.radicata 0.00000000 1.00000000
## Kindbergia.praelonga 0.28741093 0.71258907
## Lathyrus.pratensis 0.29530201 0.70469799
## Leontodon.hispidus 0.49123799 0.50876201
## Leontodon.saxatilis 1.00000000 0.00000000
## Leucanthemum.vulgare 0.41935484 0.58064516
## Linum.catharticum 1.00000000 0.00000000
## Lolium.perenne 0.02865649 0.97134351
## Lophocolea.semiteres 1.00000000 0.00000000
## Lotus.corniculatus 0.37571499 0.62428501
## Luzula.multiflora 1.00000000 0.00000000
## Lysimachia.maritima 1.00000000 0.00000000
## Medicago.lupulina 0.92574257 0.07425743
## Myosotis.arvensis 0.61373391 0.38626609
## Ononis.repens 1.00000000 0.00000000
## Oxalis.acetosella 0.00000000 1.00000000
## Pastinaca.sativa 1.00000000 0.00000000
## Pentaglottis.sempervirens 0.00000000 1.00000000
## Pillosella.officinarum 0.98044647 0.01955353
## Plantago.coronopus 1.00000000 0.00000000
## Plantago.lanceolata 0.92818671 0.07181329
## Pleurozium.schreberi 0.91404011 0.08595989
## Poa.annua 1.00000000 0.00000000
## Poa.spp. 0.00000000 1.00000000
## Polytrichum.commune 1.00000000 0.00000000
## Polytrichum.commune.agg. 1.00000000 0.00000000
## Polytrichum.formosum 0.00000000 1.00000000
## Potentilla.reptans 0.06486942 0.93513058
## Prunella.vulgaris 0.64705882 0.35294118
## Pseudoscleropidum.purum 0.52894995 0.47105005
## Pteridium.aquilinum 0.52380952 0.47619048
## Ranunculus.acris 1.00000000 0.00000000
## Ranunculus.repens 0.91124260 0.08875740
## Reseda.lutea 1.00000000 0.00000000
## Rhinanthus.minor 1.00000000 0.00000000
## Rhizomnium.punctatum 1.00000000 0.00000000
## Rhytidadelphus.squarrosus 0.71597633 0.28402367
## Rhytidadelphus.triquetris 1.00000000 0.00000000
## Rubus.fruticosus 1.00000000 0.00000000
## Sanguisorba.minor.spp.minor 0.09734513 0.90265487
## Saniona.uncinata 1.00000000 0.00000000
## Sedum.anglicum 1.00000000 0.00000000
## Senecio.jacobaea 0.00000000 1.00000000
## Senecio.vulgaris 1.00000000 0.00000000
## Sonchus.arvensis 1.00000000 0.00000000
## Stachys.sylvatica 0.00000000 1.00000000
## Stellaria.apetala 0.00000000 1.00000000
## Taraxacum.agg. 1.00000000 0.00000000
## Thuidium.tamariscinum 1.00000000 0.00000000
## Thymus.polytrichus 1.00000000 0.00000000
## Trichostomum.crispulum 1.00000000 0.00000000
## Trifolium.campestre 0.16514097 0.83485903
## Trifolium.dubium 1.00000000 0.00000000
## Trifolium.pratense 0.83193277 0.16806723
## Trifolium.repens 0.44172380 0.55827620
## Trisetum.flavescens 0.93856655 0.06143345
## Tussilago.farfara 0.05472637 0.94527363
## Urtica.diocia 0.28571429 0.71428571
## Veronica.officinalis 1.00000000 0.00000000
## Vicia.sativa 1.00000000 0.00000000
## Viola.riviniana 1.00000000 0.00000000
## Weissia.controversa 1.00000000 0.00000000
## Zygodon.stirtonii 1.00000000 0.00000000
##
## $indval
## 1 5
## Agrostis.spp. 0.006250000 0.426136364
## Agrostis.canina 0.000000000 0.090909091
## Alchemilla.mollis 0.000000000 0.090909091
## Alopercus.pratensis 0.033333333 0.000000000
## Angelica.sylvestris 0.000000000 0.181818182
## Anthoxanthum.odoratum 0.137662477 0.015820467
## Anthyllis.vulneraria 0.108952381 0.016623377
## Aphanes.arvensis 0.056957929 0.013239188
## Arrhenatherum.elatius 0.124528302 0.068610635
## Atrichum.undulatum 0.066666667 0.000000000
## Avenula.pratensis 0.033333333 0.000000000
## Bellis.perennis 0.213092852 0.065585717
## Betula.pubescens 0.033333333 0.000000000
## Blackstonia.perfoliata 0.033333333 0.000000000
## Brachythecium.albicans 0.000000000 0.090909091
## Brachythecium.glareosum 0.033333333 0.000000000
## Brachythecium.mildeanum 0.133333333 0.000000000
## Brachythecium.rutabulum 0.018032787 0.223546945
## Briza.media 0.024950690 0.045723507
## Bromus.hordeaceus 0.000000000 0.090909091
## Bryum.c.f..caespiticium 0.033333333 0.000000000
## Bryum.c.f..pallescens 0.100000000 0.000000000
## Bryum.capillare 0.000000000 0.090909091
## Bryum.spp. 0.100000000 0.000000000
## Calliergonella.cupsidata 0.137006544 0.267718349
## Calypogeia.arguta 0.128251121 0.065226254
## Campanula.rotundifolia 0.033333333 0.000000000
## Carex.distans 0.066666667 0.000000000
## Carex.flacca 0.038890132 0.073231758
## Carex.panicea 0.033333333 0.000000000
## Carlina.vulgaris 0.333333333 0.000000000
## Centaurea.nigra 0.066666667 0.000000000
## Centaurium.erythraea 0.066666667 0.000000000
## Centaurium.littorale 0.133333333 0.000000000
## Centaurium.pulchellum 0.033333333 0.000000000
## Cerastium.fontanum 0.009909910 0.327600328
## Chamaenerion.angustifolium 0.033333333 0.000000000
## Cirriphyllum.piliferum 0.033333333 0.000000000
## Cirsium.arvense 0.000000000 0.272727273
## Cirsium.palustre 0.066666667 0.000000000
## Crepis.capillaris 0.066666667 0.000000000
## Cynosurus.cristatus 0.011592725 0.075100830
## Dactylis.glomerata 0.012506179 0.238619512
## Dactylorhiza.fuchsii 0.066666667 0.000000000
## Danthonia.decumbens 0.033333333 0.000000000
## Daucus.carrota 0.005164319 0.076824584
## Dicranella.spp. 0.033333333 0.000000000
## Dicranum.scoparium 0.088033220 0.030886441
## Epilobium.montanum 0.034920635 0.043290043
## Equisetum.arvense 0.002156863 0.170053476
## Equisteum.variegatum 0.033333333 0.000000000
## Erigeron.acer 0.066666667 0.000000000
## Euphrasia.agg 0.366666667 0.000000000
## Festuca.ovina 0.194557823 0.002473717
## Festuca.rubra 0.113615023 0.299615877
## Festuca.rubra.agg. 0.000000000 0.090909091
## Filipendula.ulmaria 0.020754717 0.068610635
## Fissidens.adianthoides 0.033333333 0.000000000
## Fissidens.dubius 0.066666667 0.000000000
## Fissidens.exilis 0.033333333 0.000000000
## Fragaria.vesca 0.093793289 0.053918242
## Galium.aparine 0.000000000 0.090909091
## Galium.arvense 0.000000000 0.090909091
## Galium.saxatile 0.033333333 0.000000000
## Galium.verum 0.018181818 0.132231405
## Geum.urbanum 0.000000000 0.090909091
## Glechoma.hederacea 0.000000000 0.090909091
## Helicotrichon.spp. 0.000000000 0.090909091
## Heracleum.sphondylium 0.051162791 0.021141649
## Hieracium.spp. 0.000000000 0.090909091
## Holcus.spp. 0.225867649 0.262044618
## Holcus.lanatus 0.079179745 0.255663984
## Holcus.mollis 0.042307692 0.157342657
## Homalothecium.lutescens 0.066666667 0.000000000
## Hylocomium.splendens 0.139324991 0.027579550
## Hypericum.perforatum 0.063218391 0.056426332
## Hypnum.cupressiforme 0.286745214 0.004016602
## Hypnum.imponens 0.033333333 0.000000000
## Hypnum.jutlandicum 0.046962233 0.026869682
## Hypochaeris.radicata 0.000000000 0.090909091
## Kindbergia.praelonga 0.038321457 0.129561650
## Lathyrus.pratensis 0.019686801 0.064063453
## Leontodon.hispidus 0.065498398 0.046251092
## Leontodon.saxatilis 0.033333333 0.000000000
## Leucanthemum.vulgare 0.125806452 0.263929619
## Linum.catharticum 0.166666667 0.000000000
## Lolium.perenne 0.001910433 0.176607910
## Lophocolea.semiteres 0.033333333 0.000000000
## Lotus.corniculatus 0.150285994 0.340519098
## Luzula.multiflora 0.033333333 0.000000000
## Lysimachia.maritima 0.066666667 0.000000000
## Medicago.lupulina 0.123432343 0.006750675
## Myosotis.arvensis 0.081831187 0.035115099
## Ononis.repens 0.266666667 0.000000000
## Oxalis.acetosella 0.000000000 0.090909091
## Pastinaca.sativa 0.033333333 0.000000000
## Pentaglottis.sempervirens 0.000000000 0.090909091
## Pillosella.officinarum 0.359497040 0.001777593
## Plantago.coronopus 0.133333333 0.000000000
## Plantago.lanceolata 0.340335129 0.013056961
## Pleurozium.schreberi 0.091404011 0.007814535
## Poa.annua 0.100000000 0.000000000
## Poa.spp. 0.000000000 0.090909091
## Polytrichum.commune 0.033333333 0.000000000
## Polytrichum.commune.agg. 0.033333333 0.000000000
## Polytrichum.formosum 0.000000000 0.090909091
## Potentilla.reptans 0.006486942 0.085011871
## Prunella.vulgaris 0.086274510 0.032085561
## Pseudoscleropidum.purum 0.123421655 0.042822732
## Pteridium.aquilinum 0.034920635 0.043290043
## Ranunculus.acris 0.033333333 0.000000000
## Ranunculus.repens 0.060749507 0.008068854
## Reseda.lutea 0.033333333 0.000000000
## Rhinanthus.minor 0.033333333 0.000000000
## Rhizomnium.punctatum 0.033333333 0.000000000
## Rhytidadelphus.squarrosus 0.262524655 0.051640667
## Rhytidadelphus.triquetris 0.066666667 0.000000000
## Rubus.fruticosus 0.066666667 0.000000000
## Sanguisorba.minor.spp.minor 0.003244838 0.082059533
## Saniona.uncinata 0.066666667 0.000000000
## Sedum.anglicum 0.033333333 0.000000000
## Senecio.jacobaea 0.000000000 0.181818182
## Senecio.vulgaris 0.033333333 0.000000000
## Sonchus.arvensis 0.033333333 0.000000000
## Stachys.sylvatica 0.000000000 0.181818182
## Stellaria.apetala 0.000000000 0.090909091
## Taraxacum.agg. 0.366666667 0.000000000
## Thuidium.tamariscinum 0.100000000 0.000000000
## Thymus.polytrichus 0.266666667 0.000000000
## Trichostomum.crispulum 0.200000000 0.000000000
## Trifolium.campestre 0.016514097 0.303585100
## Trifolium.dubium 0.066666667 0.000000000
## Trifolium.pratense 0.083193277 0.015278839
## Trifolium.repens 0.044172380 0.101504764
## Trisetum.flavescens 0.093856655 0.005584859
## Tussilago.farfara 0.001824212 0.171867933
## Urtica.diocia 0.028571429 0.064935065
## Veronica.officinalis 0.033333333 0.000000000
## Vicia.sativa 0.033333333 0.000000000
## Viola.riviniana 0.033333333 0.000000000
## Weissia.controversa 0.033333333 0.000000000
## Zygodon.stirtonii 0.033333333 0.000000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 2 2
## Alchemilla.mollis Alopercus.pratensis
## 2 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 2 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 2 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 2
## Briza.media Bromus.hordeaceus
## 2 2
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 2 1
## Calliergonella.cupsidata Calypogeia.arguta
## 2 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 2 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 2 1
## Crepis.capillaris Cynosurus.cristatus
## 1 2
## Dactylis.glomerata Dactylorhiza.fuchsii
## 2 1
## Danthonia.decumbens Daucus.carrota
## 1 2
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 2 2
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 1
## Festuca.rubra Festuca.rubra.agg.
## 2 2
## Filipendula.ulmaria Fissidens.adianthoides
## 2 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 2
## Galium.arvense Galium.saxatile
## 2 1
## Galium.verum Geum.urbanum
## 2 2
## Glechoma.hederacea Helicotrichon.spp.
## 2 2
## Heracleum.sphondylium Hieracium.spp.
## 1 2
## Holcus.spp. Holcus.lanatus
## 2 2
## Holcus.mollis Homalothecium.lutescens
## 2 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 2
## Kindbergia.praelonga Lathyrus.pratensis
## 2 2
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 2 1
## Lolium.perenne Lophocolea.semiteres
## 2 1
## Lotus.corniculatus Luzula.multiflora
## 2 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 2 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 2 1
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 2 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 2
## Potentilla.reptans Prunella.vulgaris
## 2 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 2
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 2 1
## Sedum.anglicum Senecio.jacobaea
## 1 2
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 2 2
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 2 1
## Trifolium.pratense Trifolium.repens
## 1 2
## Trisetum.flavescens Tussilago.farfara
## 1 2
## Urtica.diocia Veronica.officinalis
## 2 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.42613636 0.09090909
## Alchemilla.mollis Alopercus.pratensis
## 0.09090909 0.03333333
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.18181818 0.13766248
## Anthyllis.vulneraria Aphanes.arvensis
## 0.10895238 0.05695793
## Arrhenatherum.elatius Atrichum.undulatum
## 0.12452830 0.06666667
## Avenula.pratensis Bellis.perennis
## 0.03333333 0.21309285
## Betula.pubescens Blackstonia.perfoliata
## 0.03333333 0.03333333
## Brachythecium.albicans Brachythecium.glareosum
## 0.09090909 0.03333333
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.13333333 0.22354694
## Briza.media Bromus.hordeaceus
## 0.04572351 0.09090909
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.03333333 0.10000000
## Bryum.capillare Bryum.spp.
## 0.09090909 0.10000000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.26771835 0.12825112
## Campanula.rotundifolia Carex.distans
## 0.03333333 0.06666667
## Carex.flacca Carex.panicea
## 0.07323176 0.03333333
## Carlina.vulgaris Centaurea.nigra
## 0.33333333 0.06666667
## Centaurium.erythraea Centaurium.littorale
## 0.06666667 0.13333333
## Centaurium.pulchellum Cerastium.fontanum
## 0.03333333 0.32760033
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.03333333 0.03333333
## Cirsium.arvense Cirsium.palustre
## 0.27272727 0.06666667
## Crepis.capillaris Cynosurus.cristatus
## 0.06666667 0.07510083
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.23861951 0.06666667
## Danthonia.decumbens Daucus.carrota
## 0.03333333 0.07682458
## Dicranella.spp. Dicranum.scoparium
## 0.03333333 0.08803322
## Epilobium.montanum Equisetum.arvense
## 0.04329004 0.17005348
## Equisteum.variegatum Erigeron.acer
## 0.03333333 0.06666667
## Euphrasia.agg Festuca.ovina
## 0.36666667 0.19455782
## Festuca.rubra Festuca.rubra.agg.
## 0.29961588 0.09090909
## Filipendula.ulmaria Fissidens.adianthoides
## 0.06861063 0.03333333
## Fissidens.dubius Fissidens.exilis
## 0.06666667 0.03333333
## Fragaria.vesca Galium.aparine
## 0.09379329 0.09090909
## Galium.arvense Galium.saxatile
## 0.09090909 0.03333333
## Galium.verum Geum.urbanum
## 0.13223140 0.09090909
## Glechoma.hederacea Helicotrichon.spp.
## 0.09090909 0.09090909
## Heracleum.sphondylium Hieracium.spp.
## 0.05116279 0.09090909
## Holcus.spp. Holcus.lanatus
## 0.26204462 0.25566398
## Holcus.mollis Homalothecium.lutescens
## 0.15734266 0.06666667
## Hylocomium.splendens Hypericum.perforatum
## 0.13932499 0.06321839
## Hypnum.cupressiforme Hypnum.imponens
## 0.28674521 0.03333333
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.04696223 0.09090909
## Kindbergia.praelonga Lathyrus.pratensis
## 0.12956165 0.06406345
## Leontodon.hispidus Leontodon.saxatilis
## 0.06549840 0.03333333
## Leucanthemum.vulgare Linum.catharticum
## 0.26392962 0.16666667
## Lolium.perenne Lophocolea.semiteres
## 0.17660791 0.03333333
## Lotus.corniculatus Luzula.multiflora
## 0.34051910 0.03333333
## Lysimachia.maritima Medicago.lupulina
## 0.06666667 0.12343234
## Myosotis.arvensis Ononis.repens
## 0.08183119 0.26666667
## Oxalis.acetosella Pastinaca.sativa
## 0.09090909 0.03333333
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.09090909 0.35949704
## Plantago.coronopus Plantago.lanceolata
## 0.13333333 0.34033513
## Pleurozium.schreberi Poa.annua
## 0.09140401 0.10000000
## Poa.spp. Polytrichum.commune
## 0.09090909 0.03333333
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.03333333 0.09090909
## Potentilla.reptans Prunella.vulgaris
## 0.08501187 0.08627451
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.12342166 0.04329004
## Ranunculus.acris Ranunculus.repens
## 0.03333333 0.06074951
## Reseda.lutea Rhinanthus.minor
## 0.03333333 0.03333333
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.03333333 0.26252465
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.06666667 0.06666667
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.08205953 0.06666667
## Sedum.anglicum Senecio.jacobaea
## 0.03333333 0.18181818
## Senecio.vulgaris Sonchus.arvensis
## 0.03333333 0.03333333
## Stachys.sylvatica Stellaria.apetala
## 0.18181818 0.09090909
## Taraxacum.agg. Thuidium.tamariscinum
## 0.36666667 0.10000000
## Thymus.polytrichus Trichostomum.crispulum
## 0.26666667 0.20000000
## Trifolium.campestre Trifolium.dubium
## 0.30358510 0.06666667
## Trifolium.pratense Trifolium.repens
## 0.08319328 0.10150476
## Trisetum.flavescens Tussilago.farfara
## 0.09385666 0.17186793
## Urtica.diocia Veronica.officinalis
## 0.06493506 0.03333333
## Vicia.sativa Viola.riviniana
## 0.03333333 0.03333333
## Weissia.controversa Zygodon.stirtonii
## 0.03333333 0.03333333
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.007 0.275
## Alchemilla.mollis Alopercus.pratensis
## 0.268 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.064 0.544
## Anthyllis.vulneraria Aphanes.arvensis
## 0.651 0.842
## Arrhenatherum.elatius Atrichum.undulatum
## 0.830 0.620
## Avenula.pratensis Bellis.perennis
## 1.000 0.528
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 0.267 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.433 0.116
## Briza.media Bromus.hordeaceus
## 1.000 0.280
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 0.536
## Bryum.capillare Bryum.spp.
## 0.258 0.525
## Calliergonella.cupsidata Calypogeia.arguta
## 0.438 0.672
## Campanula.rotundifolia Carex.distans
## 1.000 0.796
## Carex.flacca Carex.panicea
## 1.000 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.068 0.799
## Centaurium.erythraea Centaurium.littorale
## 0.808 0.418
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.028
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 0.016 0.801
## Crepis.capillaris Cynosurus.cristatus
## 0.783 0.696
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.099 0.794
## Danthonia.decumbens Daucus.carrota
## 1.000 0.265
## Dicranella.spp. Dicranum.scoparium
## 1.000 0.781
## Epilobium.montanum Equisetum.arvense
## 1.000 0.126
## Equisteum.variegatum Erigeron.acer
## 1.000 0.787
## Euphrasia.agg Festuca.ovina
## 0.036 0.284
## Festuca.rubra Festuca.rubra.agg.
## 0.282 0.259
## Filipendula.ulmaria Fissidens.adianthoides
## 0.708 1.000
## Fissidens.dubius Fissidens.exilis
## 0.777 1.000
## Fragaria.vesca Galium.aparine
## 0.888 0.251
## Galium.arvense Galium.saxatile
## 0.244 1.000
## Galium.verum Geum.urbanum
## 0.496 0.275
## Glechoma.hederacea Helicotrichon.spp.
## 0.273 0.271
## Heracleum.sphondylium Hieracium.spp.
## 1.000 0.285
## Holcus.spp. Holcus.lanatus
## 0.926 0.360
## Holcus.mollis Homalothecium.lutescens
## 0.417 0.823
## Hylocomium.splendens Hypericum.perforatum
## 0.441 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 0.143 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 0.285
## Kindbergia.praelonga Lathyrus.pratensis
## 0.493 0.715
## Leontodon.hispidus Leontodon.saxatilis
## 0.890 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.412 0.263
## Lolium.perenne Lophocolea.semiteres
## 0.169 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.303 1.000
## Lysimachia.maritima Medicago.lupulina
## 0.789 0.622
## Myosotis.arvensis Ononis.repens
## 0.799 0.129
## Oxalis.acetosella Pastinaca.sativa
## 0.299 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.275 0.115
## Plantago.coronopus Plantago.lanceolata
## 0.466 0.137
## Pleurozium.schreberi Poa.annua
## 0.635 0.531
## Poa.spp. Polytrichum.commune
## 0.241 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 0.293
## Potentilla.reptans Prunella.vulgaris
## 0.775 0.910
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.775 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 0.845
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.299
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.581 0.793
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.272 0.600
## Sedum.anglicum Senecio.jacobaea
## 1.000 0.061
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 0.077 0.246
## Taraxacum.agg. Thuidium.tamariscinum
## 0.045 0.550
## Thymus.polytrichus Trichostomum.crispulum
## 0.152 0.245
## Trifolium.campestre Trifolium.dubium
## 0.036 0.801
## Trifolium.pratense Trifolium.repens
## 0.683 0.741
## Trisetum.flavescens Tussilago.farfara
## 0.747 0.081
## Urtica.diocia Veronica.officinalis
## 0.854 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Here, Agrostis agg has the highest indval value, 0.426, and the lowest p value, 0.001. #Agrostis agg is reported as the indicator species for Kaolinite.
#Doing an indval analysis for Muscovite…
clustMuscovite <-cut(PlantChemistry1$Muscovite, 5, labels=FALSE)
MuscoviteIndval <- indval(as.matrix(PlantSpecies1), clustMuscovite, type= "long")
gr <- MuscoviteIndval$maxcls[MuscoviteIndval$pval<=0.05]
iv <- MuscoviteIndval$indcls[MuscoviteIndval$pval<=0.05]
pv <- MuscoviteIndval$pval[MuscoviteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[MuscoviteIndval$pval<=0.05]
MuscoviteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
MuscoviteIndvalsummary <- MuscoviteIndvalsummary[order(MuscoviteIndvalsummary$group,
-MuscoviteIndvalsummary$indval),]
print(MuscoviteIndvalsummary)
## group indval pvalue freq
## Thymus.polytrichus 1 0.3478261 0.011 6
## Carlina.vulgaris 1 0.3349839 0.032 2
## Trichostomum.crispulum 1 0.2608696 0.043 7
## Rhytidadelphus.squarrosus 2 0.4323308 0.007 2
## Calliergonella.cupsidata 2 0.4205599 0.024 8
## Urtica.diocia 2 0.2222222 0.021 1
summary(indval(as.matrix(PlantSpecies1), clustMuscovite))
## cluster indicator_value probability
## Pillosella.officinarum 1 0.3685 0.048
## Thymus.polytrichus 1 0.3478 0.013
## Carlina.vulgaris 1 0.3350 0.030
## Trichostomum.crispulum 1 0.2609 0.037
## Linum.catharticum 1 0.2174 0.044
## Rhytidadelphus.squarrosus 2 0.4323 0.008
## Calliergonella.cupsidata 2 0.4206 0.024
## Urtica.diocia 2 0.2222 0.030
##
## Sum of probabilities = 74.75
##
## Sum of Indicator Values = 15.86
##
## Sum of Significant Indicator Values = 2.6
##
## Number of Significant Indicators = 8
##
## Significant Indicator Distribution
##
## 1 2
## 5 3
print(indval(as.matrix(PlantSpecies1), clustMuscovite))
## $relfrq
## 1 5
## Agrostis.spp. 0.13043478 0.27777778
## Agrostis.canina 0.00000000 0.05555556
## Alchemilla.mollis 0.00000000 0.05555556
## Alopercus.pratensis 0.04347826 0.00000000
## Angelica.sylvestris 0.04347826 0.05555556
## Anthoxanthum.odoratum 0.08695652 0.22222222
## Anthyllis.vulneraria 0.17391304 0.05555556
## Aphanes.arvensis 0.04347826 0.11111111
## Arrhenatherum.elatius 0.13043478 0.27777778
## Atrichum.undulatum 0.00000000 0.11111111
## Avenula.pratensis 0.04347826 0.00000000
## Bellis.perennis 0.26086957 0.33333333
## Betula.pubescens 0.00000000 0.05555556
## Blackstonia.perfoliata 0.04347826 0.00000000
## Brachythecium.albicans 0.00000000 0.05555556
## Brachythecium.glareosum 0.00000000 0.05555556
## Brachythecium.mildeanum 0.04347826 0.16666667
## Brachythecium.rutabulum 0.08695652 0.22222222
## Briza.media 0.04347826 0.11111111
## Bromus.hordeaceus 0.00000000 0.05555556
## Bryum.c.f..caespiticium 0.00000000 0.05555556
## Bryum.c.f..pallescens 0.08695652 0.05555556
## Bryum.capillare 0.04347826 0.00000000
## Bryum.spp. 0.08695652 0.05555556
## Calliergonella.cupsidata 0.17391304 0.61111111
## Calypogeia.arguta 0.13043478 0.27777778
## Campanula.rotundifolia 0.04347826 0.00000000
## Carex.distans 0.08695652 0.00000000
## Carex.flacca 0.17391304 0.16666667
## Carex.panicea 0.04347826 0.00000000
## Carlina.vulgaris 0.39130435 0.05555556
## Centaurea.nigra 0.04347826 0.05555556
## Centaurium.erythraea 0.08695652 0.00000000
## Centaurium.littorale 0.17391304 0.00000000
## Centaurium.pulchellum 0.04347826 0.00000000
## Cerastium.fontanum 0.17391304 0.16666667
## Chamaenerion.angustifolium 0.00000000 0.05555556
## Cirriphyllum.piliferum 0.00000000 0.05555556
## Cirsium.arvense 0.04347826 0.11111111
## Cirsium.palustre 0.00000000 0.11111111
## Crepis.capillaris 0.00000000 0.11111111
## Cynosurus.cristatus 0.04347826 0.11111111
## Dactylis.glomerata 0.13043478 0.16666667
## Dactylorhiza.fuchsii 0.00000000 0.11111111
## Danthonia.decumbens 0.00000000 0.05555556
## Daucus.carrota 0.08695652 0.00000000
## Dicranella.spp. 0.04347826 0.00000000
## Dicranum.scoparium 0.08695652 0.16666667
## Epilobium.montanum 0.00000000 0.16666667
## Equisetum.arvense 0.08695652 0.05555556
## Equisteum.variegatum 0.04347826 0.00000000
## Erigeron.acer 0.04347826 0.05555556
## Euphrasia.agg 0.26086957 0.27777778
## Festuca.ovina 0.26086957 0.05555556
## Festuca.rubra 0.39130435 0.33333333
## Festuca.rubra.agg. 0.04347826 0.00000000
## Filipendula.ulmaria 0.00000000 0.16666667
## Fissidens.adianthoides 0.00000000 0.05555556
## Fissidens.dubius 0.04347826 0.05555556
## Fissidens.exilis 0.04347826 0.00000000
## Fragaria.vesca 0.08695652 0.22222222
## Galium.aparine 0.00000000 0.05555556
## Galium.arvense 0.00000000 0.05555556
## Galium.saxatile 0.00000000 0.05555556
## Galium.verum 0.08695652 0.11111111
## Geum.urbanum 0.04347826 0.00000000
## Glechoma.hederacea 0.04347826 0.00000000
## Helicotrichon.spp. 0.00000000 0.05555556
## Heracleum.sphondylium 0.00000000 0.16666667
## Hieracium.spp. 0.04347826 0.00000000
## Holcus.spp. 0.52173913 0.50000000
## Holcus.lanatus 0.26086957 0.33333333
## Holcus.mollis 0.13043478 0.16666667
## Homalothecium.lutescens 0.04347826 0.05555556
## Hylocomium.splendens 0.08695652 0.27777778
## Hypericum.perforatum 0.04347826 0.27777778
## Hypnum.cupressiforme 0.26086957 0.22222222
## Hypnum.imponens 0.04347826 0.00000000
## Hypnum.jutlandicum 0.04347826 0.11111111
## Hypochaeris.radicata 0.00000000 0.05555556
## Kindbergia.praelonga 0.13043478 0.16666667
## Lathyrus.pratensis 0.00000000 0.16666667
## Leontodon.hispidus 0.21739130 0.00000000
## Leontodon.saxatilis 0.04347826 0.00000000
## Leucanthemum.vulgare 0.30434783 0.38888889
## Linum.catharticum 0.21739130 0.00000000
## Lolium.perenne 0.08695652 0.11111111
## Lophocolea.semiteres 0.00000000 0.05555556
## Lotus.corniculatus 0.43478261 0.44444444
## Luzula.multiflora 0.00000000 0.05555556
## Lysimachia.maritima 0.08695652 0.00000000
## Medicago.lupulina 0.17391304 0.05555556
## Myosotis.arvensis 0.08695652 0.16666667
## Ononis.repens 0.26086957 0.11111111
## Oxalis.acetosella 0.04347826 0.00000000
## Pastinaca.sativa 0.04347826 0.00000000
## Pentaglottis.sempervirens 0.00000000 0.05555556
## Pillosella.officinarum 0.43478261 0.11111111
## Plantago.coronopus 0.13043478 0.05555556
## Plantago.lanceolata 0.30434783 0.33333333
## Pleurozium.schreberi 0.08695652 0.11111111
## Poa.annua 0.13043478 0.00000000
## Poa.spp. 0.00000000 0.05555556
## Polytrichum.commune 0.04347826 0.00000000
## Polytrichum.commune.agg. 0.04347826 0.00000000
## Polytrichum.formosum 0.04347826 0.00000000
## Potentilla.reptans 0.04347826 0.16666667
## Prunella.vulgaris 0.08695652 0.16666667
## Pseudoscleropidum.purum 0.13043478 0.27777778
## Pteridium.aquilinum 0.04347826 0.11111111
## Ranunculus.acris 0.00000000 0.05555556
## Ranunculus.repens 0.00000000 0.16666667
## Reseda.lutea 0.04347826 0.00000000
## Rhinanthus.minor 0.00000000 0.05555556
## Rhizomnium.punctatum 0.00000000 0.05555556
## Rhytidadelphus.squarrosus 0.17391304 0.50000000
## Rhytidadelphus.triquetris 0.00000000 0.11111111
## Rubus.fruticosus 0.00000000 0.11111111
## Sanguisorba.minor.spp.minor 0.00000000 0.11111111
## Saniona.uncinata 0.04347826 0.05555556
## Sedum.anglicum 0.04347826 0.00000000
## Senecio.jacobaea 0.00000000 0.11111111
## Senecio.vulgaris 0.04347826 0.00000000
## Sonchus.arvensis 0.00000000 0.05555556
## Stachys.sylvatica 0.00000000 0.11111111
## Stellaria.apetala 0.00000000 0.05555556
## Taraxacum.agg. 0.30434783 0.22222222
## Thuidium.tamariscinum 0.04347826 0.11111111
## Thymus.polytrichus 0.34782609 0.00000000
## Trichostomum.crispulum 0.26086957 0.00000000
## Trifolium.campestre 0.13043478 0.22222222
## Trifolium.dubium 0.08695652 0.00000000
## Trifolium.pratense 0.04347826 0.16666667
## Trifolium.repens 0.04347826 0.22222222
## Trisetum.flavescens 0.13043478 0.05555556
## Tussilago.farfara 0.08695652 0.05555556
## Urtica.diocia 0.00000000 0.22222222
## Veronica.officinalis 0.00000000 0.05555556
## Vicia.sativa 0.00000000 0.05555556
## Viola.riviniana 0.00000000 0.05555556
## Weissia.controversa 0.00000000 0.05555556
## Zygodon.stirtonii 0.04347826 0.00000000
##
## $relabu
## 1 5
## Agrostis.spp. 0.72289157 0.277108434
## Agrostis.canina 0.00000000 1.000000000
## Alchemilla.mollis 0.00000000 1.000000000
## Alopercus.pratensis 1.00000000 0.000000000
## Angelica.sylvestris 0.43902439 0.560975610
## Anthoxanthum.odoratum 0.07967422 0.920325779
## Anthyllis.vulneraria 0.64512210 0.354877901
## Aphanes.arvensis 0.24590164 0.754098361
## Arrhenatherum.elatius 0.08496291 0.915037087
## Atrichum.undulatum 0.00000000 1.000000000
## Avenula.pratensis 1.00000000 0.000000000
## Bellis.perennis 0.42500000 0.575000000
## Betula.pubescens 0.00000000 1.000000000
## Blackstonia.perfoliata 1.00000000 0.000000000
## Brachythecium.albicans 0.00000000 1.000000000
## Brachythecium.glareosum 0.00000000 1.000000000
## Brachythecium.mildeanum 0.06122449 0.938775510
## Brachythecium.rutabulum 0.20689655 0.793103448
## Briza.media 0.04085106 0.959148936
## Bromus.hordeaceus 0.00000000 1.000000000
## Bryum.c.f..caespiticium 0.00000000 1.000000000
## Bryum.c.f..pallescens 0.89592760 0.104072398
## Bryum.capillare 1.00000000 0.000000000
## Bryum.spp. 0.86227545 0.137724551
## Calliergonella.cupsidata 0.31181102 0.688188976
## Calypogeia.arguta 0.34685598 0.653144016
## Campanula.rotundifolia 1.00000000 0.000000000
## Carex.distans 1.00000000 0.000000000
## Carex.flacca 0.29347826 0.706521739
## Carex.panicea 1.00000000 0.000000000
## Carlina.vulgaris 0.85607009 0.143929912
## Centaurea.nigra 0.28125000 0.718750000
## Centaurium.erythraea 1.00000000 0.000000000
## Centaurium.littorale 1.00000000 0.000000000
## Centaurium.pulchellum 1.00000000 0.000000000
## Cerastium.fontanum 0.63779528 0.362204724
## Chamaenerion.angustifolium 0.00000000 1.000000000
## Cirriphyllum.piliferum 0.00000000 1.000000000
## Cirsium.arvense 0.47213115 0.527868852
## Cirsium.palustre 0.00000000 1.000000000
## Crepis.capillaris 0.00000000 1.000000000
## Cynosurus.cristatus 0.14361702 0.856382979
## Dactylis.glomerata 0.79172057 0.208279431
## Dactylorhiza.fuchsii 0.00000000 1.000000000
## Danthonia.decumbens 0.00000000 1.000000000
## Daucus.carrota 1.00000000 0.000000000
## Dicranella.spp. 1.00000000 0.000000000
## Dicranum.scoparium 0.49450549 0.505494505
## Epilobium.montanum 0.00000000 1.000000000
## Equisetum.arvense 0.18274112 0.817258883
## Equisteum.variegatum 1.00000000 0.000000000
## Erigeron.acer 0.76530612 0.234693878
## Euphrasia.agg 0.72217429 0.277825712
## Festuca.ovina 0.83129584 0.168704156
## Festuca.rubra 0.41040835 0.589591653
## Festuca.rubra.agg. 1.00000000 0.000000000
## Filipendula.ulmaria 0.00000000 1.000000000
## Fissidens.adianthoides 0.00000000 1.000000000
## Fissidens.dubius 0.61016949 0.389830508
## Fissidens.exilis 1.00000000 0.000000000
## Fragaria.vesca 0.10791631 0.892083690
## Galium.aparine 0.00000000 1.000000000
## Galium.arvense 0.00000000 1.000000000
## Galium.saxatile 0.00000000 1.000000000
## Galium.verum 0.01323854 0.986761461
## Geum.urbanum 1.00000000 0.000000000
## Glechoma.hederacea 1.00000000 0.000000000
## Helicotrichon.spp. 0.00000000 1.000000000
## Heracleum.sphondylium 0.00000000 1.000000000
## Hieracium.spp. 1.00000000 0.000000000
## Holcus.spp. 0.45970081 0.540299187
## Holcus.lanatus 0.42071328 0.579286722
## Holcus.mollis 0.62411661 0.375883392
## Homalothecium.lutescens 0.04663212 0.953367876
## Hylocomium.splendens 0.24454567 0.755454327
## Hypericum.perforatum 0.31952663 0.680473373
## Hypnum.cupressiforme 0.72000000 0.280000000
## Hypnum.imponens 1.00000000 0.000000000
## Hypnum.jutlandicum 0.10746269 0.892537313
## Hypochaeris.radicata 0.00000000 1.000000000
## Kindbergia.praelonga 0.55980861 0.440191388
## Lathyrus.pratensis 0.00000000 1.000000000
## Leontodon.hispidus 1.00000000 0.000000000
## Leontodon.saxatilis 1.00000000 0.000000000
## Leucanthemum.vulgare 0.26584088 0.734159123
## Linum.catharticum 1.00000000 0.000000000
## Lolium.perenne 0.05923836 0.940761636
## Lophocolea.semiteres 0.00000000 1.000000000
## Lotus.corniculatus 0.50803953 0.491960466
## Luzula.multiflora 0.00000000 1.000000000
## Lysimachia.maritima 1.00000000 0.000000000
## Medicago.lupulina 0.96377953 0.036220472
## Myosotis.arvensis 0.26239067 0.737609329
## Ononis.repens 0.98497223 0.015027769
## Oxalis.acetosella 1.00000000 0.000000000
## Pastinaca.sativa 1.00000000 0.000000000
## Pentaglottis.sempervirens 0.00000000 1.000000000
## Pillosella.officinarum 0.84753363 0.152466368
## Plantago.coronopus 0.87173466 0.128265336
## Plantago.lanceolata 0.36892562 0.631074380
## Pleurozium.schreberi 0.19236641 0.807633588
## Poa.annua 1.00000000 0.000000000
## Poa.spp. 0.00000000 1.000000000
## Polytrichum.commune 1.00000000 0.000000000
## Polytrichum.commune.agg. 1.00000000 0.000000000
## Polytrichum.formosum 1.00000000 0.000000000
## Potentilla.reptans 0.01787488 0.982125124
## Prunella.vulgaris 0.52282158 0.477178423
## Pseudoscleropidum.purum 0.24428571 0.755714286
## Pteridium.aquilinum 0.20689655 0.793103448
## Ranunculus.acris 0.00000000 1.000000000
## Ranunculus.repens 0.00000000 1.000000000
## Reseda.lutea 1.00000000 0.000000000
## Rhinanthus.minor 0.00000000 1.000000000
## Rhizomnium.punctatum 0.00000000 1.000000000
## Rhytidadelphus.squarrosus 0.13533835 0.864661654
## Rhytidadelphus.triquetris 0.00000000 1.000000000
## Rubus.fruticosus 0.00000000 1.000000000
## Sanguisorba.minor.spp.minor 0.00000000 1.000000000
## Saniona.uncinata 0.43902439 0.560975610
## Sedum.anglicum 1.00000000 0.000000000
## Senecio.jacobaea 0.00000000 1.000000000
## Senecio.vulgaris 1.00000000 0.000000000
## Sonchus.arvensis 0.00000000 1.000000000
## Stachys.sylvatica 0.00000000 1.000000000
## Stellaria.apetala 0.00000000 1.000000000
## Taraxacum.agg. 0.56603774 0.433962264
## Thuidium.tamariscinum 0.13533835 0.864661654
## Thymus.polytrichus 1.00000000 0.000000000
## Trichostomum.crispulum 1.00000000 0.000000000
## Trifolium.campestre 0.14617169 0.853828306
## Trifolium.dubium 1.00000000 0.000000000
## Trifolium.pratense 0.67259786 0.327402135
## Trifolium.repens 0.02627737 0.973722628
## Trisetum.flavescens 0.99003898 0.009961022
## Tussilago.farfara 0.26751592 0.732484076
## Urtica.diocia 0.00000000 1.000000000
## Veronica.officinalis 0.00000000 1.000000000
## Vicia.sativa 0.00000000 1.000000000
## Viola.riviniana 0.00000000 1.000000000
## Weissia.controversa 0.00000000 1.000000000
## Zygodon.stirtonii 1.00000000 0.000000000
##
## $indval
## 1 5
## Agrostis.spp. 0.0942902043 0.0769745649
## Agrostis.canina 0.0000000000 0.0555555556
## Alchemilla.mollis 0.0000000000 0.0555555556
## Alopercus.pratensis 0.0434782609 0.0000000000
## Angelica.sylvestris 0.0190880170 0.0311653117
## Anthoxanthum.odoratum 0.0069281931 0.2045168398
## Anthyllis.vulneraria 0.1121951477 0.0197154389
## Aphanes.arvensis 0.0106913756 0.0837887067
## Arrhenatherum.elatius 0.0110821191 0.2541769686
## Atrichum.undulatum 0.0000000000 0.1111111111
## Avenula.pratensis 0.0434782609 0.0000000000
## Bellis.perennis 0.1108695652 0.1916666667
## Betula.pubescens 0.0000000000 0.0555555556
## Blackstonia.perfoliata 0.0434782609 0.0000000000
## Brachythecium.albicans 0.0000000000 0.0555555556
## Brachythecium.glareosum 0.0000000000 0.0555555556
## Brachythecium.mildeanum 0.0026619343 0.1564625850
## Brachythecium.rutabulum 0.0179910045 0.1762452107
## Briza.media 0.0017761332 0.1065721040
## Bromus.hordeaceus 0.0000000000 0.0555555556
## Bryum.c.f..caespiticium 0.0000000000 0.0555555556
## Bryum.c.f..pallescens 0.0779067480 0.0057817999
## Bryum.capillare 0.0434782609 0.0000000000
## Bryum.spp. 0.0749804738 0.0076513639
## Calliergonella.cupsidata 0.0542280041 0.4205599300
## Calypogeia.arguta 0.0452420848 0.1814288934
## Campanula.rotundifolia 0.0434782609 0.0000000000
## Carex.distans 0.0869565217 0.0000000000
## Carex.flacca 0.0510396975 0.1177536232
## Carex.panicea 0.0434782609 0.0000000000
## Carlina.vulgaris 0.3349839473 0.0079961062
## Centaurea.nigra 0.0122282609 0.0399305556
## Centaurium.erythraea 0.0869565217 0.0000000000
## Centaurium.littorale 0.1739130435 0.0000000000
## Centaurium.pulchellum 0.0434782609 0.0000000000
## Cerastium.fontanum 0.1109209175 0.0603674541
## Chamaenerion.angustifolium 0.0000000000 0.0555555556
## Cirriphyllum.piliferum 0.0000000000 0.0555555556
## Cirsium.arvense 0.0205274412 0.0586520947
## Cirsium.palustre 0.0000000000 0.1111111111
## Crepis.capillaris 0.0000000000 0.1111111111
## Cynosurus.cristatus 0.0062442183 0.0951536643
## Dactylis.glomerata 0.1032679003 0.0347132385
## Dactylorhiza.fuchsii 0.0000000000 0.1111111111
## Danthonia.decumbens 0.0000000000 0.0555555556
## Daucus.carrota 0.0869565217 0.0000000000
## Dicranella.spp. 0.0434782609 0.0000000000
## Dicranum.scoparium 0.0430004778 0.0842490842
## Epilobium.montanum 0.0000000000 0.1666666667
## Equisetum.arvense 0.0158905319 0.0454032713
## Equisteum.variegatum 0.0434782609 0.0000000000
## Erigeron.acer 0.0332741792 0.0130385488
## Euphrasia.agg 0.1883932926 0.0771738088
## Festuca.ovina 0.2168597853 0.0093724531
## Festuca.rubra 0.1605945707 0.1965305509
## Festuca.rubra.agg. 0.0434782609 0.0000000000
## Filipendula.ulmaria 0.0000000000 0.1666666667
## Fissidens.adianthoides 0.0000000000 0.0555555556
## Fissidens.dubius 0.0265291083 0.0216572505
## Fissidens.exilis 0.0434782609 0.0000000000
## Fragaria.vesca 0.0093840269 0.1982408200
## Galium.aparine 0.0000000000 0.0555555556
## Galium.arvense 0.0000000000 0.0555555556
## Galium.saxatile 0.0000000000 0.0555555556
## Galium.verum 0.0011511773 0.1096401623
## Geum.urbanum 0.0434782609 0.0000000000
## Glechoma.hederacea 0.0434782609 0.0000000000
## Helicotrichon.spp. 0.0000000000 0.0555555556
## Heracleum.sphondylium 0.0000000000 0.1666666667
## Hieracium.spp. 0.0434782609 0.0000000000
## Holcus.spp. 0.2398439026 0.2701495933
## Holcus.lanatus 0.1097512900 0.1930955739
## Holcus.mollis 0.0814065141 0.0626472320
## Homalothecium.lutescens 0.0020274837 0.0529648820
## Hylocomium.splendens 0.0212648411 0.2098484243
## Hypericum.perforatum 0.0138924621 0.1890203813
## Hypnum.cupressiforme 0.1878260870 0.0622222222
## Hypnum.imponens 0.0434782609 0.0000000000
## Hypnum.jutlandicum 0.0046722907 0.0991708126
## Hypochaeris.radicata 0.0000000000 0.0555555556
## Kindbergia.praelonga 0.0730185147 0.0733652313
## Lathyrus.pratensis 0.0000000000 0.1666666667
## Leontodon.hispidus 0.2173913043 0.0000000000
## Leontodon.saxatilis 0.0434782609 0.0000000000
## Leucanthemum.vulgare 0.0809080929 0.2855063258
## Linum.catharticum 0.2173913043 0.0000000000
## Lolium.perenne 0.0051511621 0.1045290707
## Lophocolea.semiteres 0.0000000000 0.0555555556
## Lotus.corniculatus 0.2208867538 0.2186490961
## Luzula.multiflora 0.0000000000 0.0555555556
## Lysimachia.maritima 0.0869565217 0.0000000000
## Medicago.lupulina 0.1676138309 0.0020122485
## Myosotis.arvensis 0.0228165800 0.1229348882
## Ononis.repens 0.2569492777 0.0016697521
## Oxalis.acetosella 0.0434782609 0.0000000000
## Pastinaca.sativa 0.0434782609 0.0000000000
## Pentaglottis.sempervirens 0.0000000000 0.0555555556
## Pillosella.officinarum 0.3684928836 0.0169407075
## Plantago.coronopus 0.1137045214 0.0071258520
## Plantago.lanceolata 0.1122817104 0.2103581267
## Pleurozium.schreberi 0.0167275141 0.0897370653
## Poa.annua 0.1304347826 0.0000000000
## Poa.spp. 0.0000000000 0.0555555556
## Polytrichum.commune 0.0434782609 0.0000000000
## Polytrichum.commune.agg. 0.0434782609 0.0000000000
## Polytrichum.formosum 0.0434782609 0.0000000000
## Potentilla.reptans 0.0007771685 0.1636875207
## Prunella.vulgaris 0.0454627458 0.0795297372
## Pseudoscleropidum.purum 0.0318633540 0.2099206349
## Pteridium.aquilinum 0.0089955022 0.0881226054
## Ranunculus.acris 0.0000000000 0.0555555556
## Ranunculus.repens 0.0000000000 0.1666666667
## Reseda.lutea 0.0434782609 0.0000000000
## Rhinanthus.minor 0.0000000000 0.0555555556
## Rhizomnium.punctatum 0.0000000000 0.0555555556
## Rhytidadelphus.squarrosus 0.0235371036 0.4323308271
## Rhytidadelphus.triquetris 0.0000000000 0.1111111111
## Rubus.fruticosus 0.0000000000 0.1111111111
## Sanguisorba.minor.spp.minor 0.0000000000 0.1111111111
## Saniona.uncinata 0.0190880170 0.0311653117
## Sedum.anglicum 0.0434782609 0.0000000000
## Senecio.jacobaea 0.0000000000 0.1111111111
## Senecio.vulgaris 0.0434782609 0.0000000000
## Sonchus.arvensis 0.0000000000 0.0555555556
## Stachys.sylvatica 0.0000000000 0.1111111111
## Stellaria.apetala 0.0000000000 0.0555555556
## Taraxacum.agg. 0.1722723544 0.0964360587
## Thuidium.tamariscinum 0.0058842759 0.0960735171
## Thymus.polytrichus 0.3478260870 0.0000000000
## Trichostomum.crispulum 0.2608695652 0.0000000000
## Trifolium.campestre 0.0190658731 0.1897396236
## Trifolium.dubium 0.0869565217 0.0000000000
## Trifolium.pratense 0.0292433854 0.0545670225
## Trifolium.repens 0.0011424944 0.2163828062
## Trisetum.flavescens 0.1291355189 0.0005533901
## Tussilago.farfara 0.0232622542 0.0406935598
## Urtica.diocia 0.0000000000 0.2222222222
## Veronica.officinalis 0.0000000000 0.0555555556
## Vicia.sativa 0.0000000000 0.0555555556
## Viola.riviniana 0.0000000000 0.0555555556
## Weissia.controversa 0.0000000000 0.0555555556
## Zygodon.stirtonii 0.0434782609 0.0000000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 2
## Alchemilla.mollis Alopercus.pratensis
## 2 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 2 2
## Anthyllis.vulneraria Aphanes.arvensis
## 1 2
## Arrhenatherum.elatius Atrichum.undulatum
## 2 2
## Avenula.pratensis Bellis.perennis
## 1 2
## Betula.pubescens Blackstonia.perfoliata
## 2 1
## Brachythecium.albicans Brachythecium.glareosum
## 2 2
## Brachythecium.mildeanum Brachythecium.rutabulum
## 2 2
## Briza.media Bromus.hordeaceus
## 2 2
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 2 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 2 2
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 2 1
## Carlina.vulgaris Centaurea.nigra
## 1 2
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 2 2
## Cirsium.arvense Cirsium.palustre
## 2 2
## Crepis.capillaris Cynosurus.cristatus
## 2 2
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 2
## Danthonia.decumbens Daucus.carrota
## 2 1
## Dicranella.spp. Dicranum.scoparium
## 1 2
## Epilobium.montanum Equisetum.arvense
## 2 2
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 1
## Festuca.rubra Festuca.rubra.agg.
## 2 1
## Filipendula.ulmaria Fissidens.adianthoides
## 2 2
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 2 2
## Galium.arvense Galium.saxatile
## 2 2
## Galium.verum Geum.urbanum
## 2 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 2
## Heracleum.sphondylium Hieracium.spp.
## 2 1
## Holcus.spp. Holcus.lanatus
## 2 2
## Holcus.mollis Homalothecium.lutescens
## 1 2
## Hylocomium.splendens Hypericum.perforatum
## 2 2
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 2 2
## Kindbergia.praelonga Lathyrus.pratensis
## 2 2
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 2 1
## Lolium.perenne Lophocolea.semiteres
## 2 2
## Lotus.corniculatus Luzula.multiflora
## 1 2
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 2 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 2 1
## Plantago.coronopus Plantago.lanceolata
## 1 2
## Pleurozium.schreberi Poa.annua
## 2 1
## Poa.spp. Polytrichum.commune
## 2 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 2 2
## Pseudoscleropidum.purum Pteridium.aquilinum
## 2 2
## Ranunculus.acris Ranunculus.repens
## 2 2
## Reseda.lutea Rhinanthus.minor
## 1 2
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 2 2
## Rhytidadelphus.triquetris Rubus.fruticosus
## 2 2
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 2 2
## Sedum.anglicum Senecio.jacobaea
## 1 2
## Senecio.vulgaris Sonchus.arvensis
## 1 2
## Stachys.sylvatica Stellaria.apetala
## 2 2
## Taraxacum.agg. Thuidium.tamariscinum
## 1 2
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 2 1
## Trifolium.pratense Trifolium.repens
## 2 2
## Trisetum.flavescens Tussilago.farfara
## 1 2
## Urtica.diocia Veronica.officinalis
## 2 2
## Vicia.sativa Viola.riviniana
## 2 2
## Weissia.controversa Zygodon.stirtonii
## 2 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.09429020 0.05555556
## Alchemilla.mollis Alopercus.pratensis
## 0.05555556 0.04347826
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.03116531 0.20451684
## Anthyllis.vulneraria Aphanes.arvensis
## 0.11219515 0.08378871
## Arrhenatherum.elatius Atrichum.undulatum
## 0.25417697 0.11111111
## Avenula.pratensis Bellis.perennis
## 0.04347826 0.19166667
## Betula.pubescens Blackstonia.perfoliata
## 0.05555556 0.04347826
## Brachythecium.albicans Brachythecium.glareosum
## 0.05555556 0.05555556
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.15646259 0.17624521
## Briza.media Bromus.hordeaceus
## 0.10657210 0.05555556
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.05555556 0.07790675
## Bryum.capillare Bryum.spp.
## 0.04347826 0.07498047
## Calliergonella.cupsidata Calypogeia.arguta
## 0.42055993 0.18142889
## Campanula.rotundifolia Carex.distans
## 0.04347826 0.08695652
## Carex.flacca Carex.panicea
## 0.11775362 0.04347826
## Carlina.vulgaris Centaurea.nigra
## 0.33498395 0.03993056
## Centaurium.erythraea Centaurium.littorale
## 0.08695652 0.17391304
## Centaurium.pulchellum Cerastium.fontanum
## 0.04347826 0.11092092
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.05555556 0.05555556
## Cirsium.arvense Cirsium.palustre
## 0.05865209 0.11111111
## Crepis.capillaris Cynosurus.cristatus
## 0.11111111 0.09515366
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.10326790 0.11111111
## Danthonia.decumbens Daucus.carrota
## 0.05555556 0.08695652
## Dicranella.spp. Dicranum.scoparium
## 0.04347826 0.08424908
## Epilobium.montanum Equisetum.arvense
## 0.16666667 0.04540327
## Equisteum.variegatum Erigeron.acer
## 0.04347826 0.03327418
## Euphrasia.agg Festuca.ovina
## 0.18839329 0.21685979
## Festuca.rubra Festuca.rubra.agg.
## 0.19653055 0.04347826
## Filipendula.ulmaria Fissidens.adianthoides
## 0.16666667 0.05555556
## Fissidens.dubius Fissidens.exilis
## 0.02652911 0.04347826
## Fragaria.vesca Galium.aparine
## 0.19824082 0.05555556
## Galium.arvense Galium.saxatile
## 0.05555556 0.05555556
## Galium.verum Geum.urbanum
## 0.10964016 0.04347826
## Glechoma.hederacea Helicotrichon.spp.
## 0.04347826 0.05555556
## Heracleum.sphondylium Hieracium.spp.
## 0.16666667 0.04347826
## Holcus.spp. Holcus.lanatus
## 0.27014959 0.19309557
## Holcus.mollis Homalothecium.lutescens
## 0.08140651 0.05296488
## Hylocomium.splendens Hypericum.perforatum
## 0.20984842 0.18902038
## Hypnum.cupressiforme Hypnum.imponens
## 0.18782609 0.04347826
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.09917081 0.05555556
## Kindbergia.praelonga Lathyrus.pratensis
## 0.07336523 0.16666667
## Leontodon.hispidus Leontodon.saxatilis
## 0.21739130 0.04347826
## Leucanthemum.vulgare Linum.catharticum
## 0.28550633 0.21739130
## Lolium.perenne Lophocolea.semiteres
## 0.10452907 0.05555556
## Lotus.corniculatus Luzula.multiflora
## 0.22088675 0.05555556
## Lysimachia.maritima Medicago.lupulina
## 0.08695652 0.16761383
## Myosotis.arvensis Ononis.repens
## 0.12293489 0.25694928
## Oxalis.acetosella Pastinaca.sativa
## 0.04347826 0.04347826
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.05555556 0.36849288
## Plantago.coronopus Plantago.lanceolata
## 0.11370452 0.21035813
## Pleurozium.schreberi Poa.annua
## 0.08973707 0.13043478
## Poa.spp. Polytrichum.commune
## 0.05555556 0.04347826
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.04347826 0.04347826
## Potentilla.reptans Prunella.vulgaris
## 0.16368752 0.07952974
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.20992063 0.08812261
## Ranunculus.acris Ranunculus.repens
## 0.05555556 0.16666667
## Reseda.lutea Rhinanthus.minor
## 0.04347826 0.05555556
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.05555556 0.43233083
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.11111111 0.11111111
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.11111111 0.03116531
## Sedum.anglicum Senecio.jacobaea
## 0.04347826 0.11111111
## Senecio.vulgaris Sonchus.arvensis
## 0.04347826 0.05555556
## Stachys.sylvatica Stellaria.apetala
## 0.11111111 0.05555556
## Taraxacum.agg. Thuidium.tamariscinum
## 0.17227235 0.09607352
## Thymus.polytrichus Trichostomum.crispulum
## 0.34782609 0.26086957
## Trifolium.campestre Trifolium.dubium
## 0.18973962 0.08695652
## Trifolium.pratense Trifolium.repens
## 0.05456702 0.21638281
## Trisetum.flavescens Tussilago.farfara
## 0.12913552 0.04069356
## Urtica.diocia Veronica.officinalis
## 0.22222222 0.05555556
## Vicia.sativa Viola.riviniana
## 0.05555556 0.05555556
## Weissia.controversa Zygodon.stirtonii
## 0.05555556 0.04347826
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.992 0.431
## Alchemilla.mollis Alopercus.pratensis
## 0.419 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 0.125
## Anthyllis.vulneraria Aphanes.arvensis
## 0.496 0.457
## Arrhenatherum.elatius Atrichum.undulatum
## 0.105 0.188
## Avenula.pratensis Bellis.perennis
## 1.000 0.553
## Betula.pubescens Blackstonia.perfoliata
## 0.439 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 0.416 0.450
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.198 0.287
## Briza.media Bromus.hordeaceus
## 0.371 0.427
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.409 0.484
## Bryum.capillare Bryum.spp.
## 1.000 0.600
## Calliergonella.cupsidata Calypogeia.arguta
## 0.020 0.326
## Campanula.rotundifolia Carex.distans
## 1.000 0.495
## Carex.flacca Carex.panicea
## 0.754 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.021 0.756
## Centaurium.erythraea Centaurium.littorale
## 0.494 0.100
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.844
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.463 0.471
## Cirsium.arvense Cirsium.palustre
## 0.862 0.183
## Crepis.capillaris Cynosurus.cristatus
## 0.201 0.350
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.716 0.181
## Danthonia.decumbens Daucus.carrota
## 0.420 0.498
## Dicranella.spp. Dicranum.scoparium
## 1.000 0.728
## Epilobium.montanum Equisetum.arvense
## 0.071 0.896
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.569 0.157
## Festuca.rubra Festuca.rubra.agg.
## 0.857 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.084 0.438
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 0.096 0.437
## Galium.arvense Galium.saxatile
## 0.442 0.472
## Galium.verum Geum.urbanum
## 0.431 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 0.465
## Heracleum.sphondylium Hieracium.spp.
## 0.090 1.000
## Holcus.spp. Holcus.lanatus
## 0.866 0.624
## Holcus.mollis Homalothecium.lutescens
## 0.857 0.743
## Hylocomium.splendens Hypericum.perforatum
## 0.154 0.169
## Hypnum.cupressiforme Hypnum.imponens
## 0.449 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.446 0.445
## Kindbergia.praelonga Lathyrus.pratensis
## 0.962 0.081
## Leontodon.hispidus Leontodon.saxatilis
## 0.077 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.283 0.054
## Lolium.perenne Lophocolea.semiteres
## 0.689 0.445
## Lotus.corniculatus Luzula.multiflora
## 0.980 0.438
## Lysimachia.maritima Medicago.lupulina
## 0.506 0.245
## Myosotis.arvensis Ononis.repens
## 0.428 0.118
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.464 0.058
## Plantago.coronopus Plantago.lanceolata
## 0.398 0.590
## Pleurozium.schreberi Poa.annua
## 0.519 0.252
## Poa.spp. Polytrichum.commune
## 0.403 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 0.161 0.850
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.179 0.489
## Ranunculus.acris Ranunculus.repens
## 0.430 0.077
## Reseda.lutea Rhinanthus.minor
## 1.000 0.462
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.434 0.006
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.190 0.216
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.178 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 0.170
## Senecio.vulgaris Sonchus.arvensis
## 1.000 0.430
## Stachys.sylvatica Stellaria.apetala
## 0.182 0.437
## Taraxacum.agg. Thuidium.tamariscinum
## 0.681 0.361
## Thymus.polytrichus Trichostomum.crispulum
## 0.011 0.036
## Trifolium.campestre Trifolium.dubium
## 0.275 0.500
## Trifolium.pratense Trifolium.repens
## 0.932 0.084
## Trisetum.flavescens Tussilago.farfara
## 0.411 1.000
## Urtica.diocia Veronica.officinalis
## 0.027 0.438
## Vicia.sativa Viola.riviniana
## 0.429 0.414
## Weissia.controversa Zygodon.stirtonii
## 0.463 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#In the MuscoviteIndvalsummary and the automatic summary, Rhytidiadelphus squarrosus is #reported as the indicator species with the highest indval value, 0.432, and a p value #of 0.012. Therefore, Rhytidiadelphus squarrosus is the indicator species for Kaolinite.
#Now to analyse Periclase…
clustPericlase <-cut(PlantChemistry1$Periclase, 5, labels=FALSE)
PericlaseIndval <- indval(as.matrix(PlantSpecies1), clustPericlase, type= "long")
gr <- PericlaseIndval$maxcls[PericlaseIndval$pval<=0.05]
iv <- PericlaseIndval$indcls[PericlaseIndval$pval<=0.05]
pv <- PericlaseIndval$pval[PericlaseIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[PericlaseIndval$pval<=0.05]
PericlaseIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
PericlaseIndvalsummary <- PericlaseIndvalsummary[order(PericlaseIndvalsummary$group,
-PericlaseIndvalsummary$indval),]
print(PericlaseIndvalsummary)
## group indval pvalue freq
## Pillosella.officinarum 2 0.552724 0.018 4
summary(indval(as.matrix(PlantSpecies1), clustPericlase))
## cluster indicator_value probability
## Pillosella.officinarum 2 0.5527 0.025
##
## Sum of probabilities = 117.013
##
## Sum of Indicator Values = 14.22
##
## Sum of Significant Indicator Values = 0.55
##
## Number of Significant Indicators = 1
##
## Significant Indicator Distribution
##
## 2
## 1
print(indval(as.matrix(PlantSpecies1), clustPericlase))
## $relfrq
## 1 5
## Agrostis.spp. 0.19444444 0.2
## Agrostis.canina 0.02777778 0.0
## Alchemilla.mollis 0.02777778 0.0
## Alopercus.pratensis 0.02777778 0.0
## Angelica.sylvestris 0.02777778 0.2
## Anthoxanthum.odoratum 0.16666667 0.0
## Anthyllis.vulneraria 0.13888889 0.0
## Aphanes.arvensis 0.08333333 0.0
## Arrhenatherum.elatius 0.22222222 0.0
## Atrichum.undulatum 0.05555556 0.0
## Avenula.pratensis 0.02777778 0.0
## Bellis.perennis 0.33333333 0.0
## Betula.pubescens 0.02777778 0.0
## Blackstonia.perfoliata 0.02777778 0.0
## Brachythecium.albicans 0.02777778 0.0
## Brachythecium.glareosum 0.02777778 0.0
## Brachythecium.mildeanum 0.11111111 0.0
## Brachythecium.rutabulum 0.13888889 0.2
## Briza.media 0.05555556 0.2
## Bromus.hordeaceus 0.02777778 0.0
## Bryum.c.f..caespiticium 0.02777778 0.0
## Bryum.c.f..pallescens 0.05555556 0.2
## Bryum.capillare 0.02777778 0.0
## Bryum.spp. 0.08333333 0.0
## Calliergonella.cupsidata 0.36111111 0.4
## Calypogeia.arguta 0.19444444 0.2
## Campanula.rotundifolia 0.02777778 0.0
## Carex.distans 0.05555556 0.0
## Carex.flacca 0.19444444 0.0
## Carex.panicea 0.02777778 0.0
## Carlina.vulgaris 0.22222222 0.4
## Centaurea.nigra 0.05555556 0.0
## Centaurium.erythraea 0.05555556 0.0
## Centaurium.littorale 0.11111111 0.0
## Centaurium.pulchellum 0.02777778 0.0
## Cerastium.fontanum 0.16666667 0.2
## Chamaenerion.angustifolium 0.02777778 0.0
## Cirriphyllum.piliferum 0.02777778 0.0
## Cirsium.arvense 0.05555556 0.2
## Cirsium.palustre 0.05555556 0.0
## Crepis.capillaris 0.05555556 0.0
## Cynosurus.cristatus 0.08333333 0.0
## Dactylis.glomerata 0.13888889 0.2
## Dactylorhiza.fuchsii 0.05555556 0.0
## Danthonia.decumbens 0.02777778 0.0
## Daucus.carrota 0.05555556 0.0
## Dicranella.spp. 0.00000000 0.2
## Dicranum.scoparium 0.13888889 0.0
## Epilobium.montanum 0.08333333 0.0
## Equisetum.arvense 0.05555556 0.2
## Equisteum.variegatum 0.02777778 0.0
## Erigeron.acer 0.05555556 0.0
## Euphrasia.agg 0.30555556 0.0
## Festuca.ovina 0.16666667 0.2
## Festuca.rubra 0.38888889 0.2
## Festuca.rubra.agg. 0.02777778 0.0
## Filipendula.ulmaria 0.08333333 0.0
## Fissidens.adianthoides 0.02777778 0.0
## Fissidens.dubius 0.05555556 0.0
## Fissidens.exilis 0.00000000 0.2
## Fragaria.vesca 0.16666667 0.0
## Galium.aparine 0.02777778 0.0
## Galium.arvense 0.02777778 0.0
## Galium.saxatile 0.00000000 0.2
## Galium.verum 0.11111111 0.0
## Geum.urbanum 0.02777778 0.0
## Glechoma.hederacea 0.02777778 0.0
## Helicotrichon.spp. 0.02777778 0.0
## Heracleum.sphondylium 0.08333333 0.0
## Hieracium.spp. 0.02777778 0.0
## Holcus.spp. 0.52777778 0.4
## Holcus.lanatus 0.30555556 0.2
## Holcus.mollis 0.13888889 0.2
## Homalothecium.lutescens 0.02777778 0.2
## Hylocomium.splendens 0.19444444 0.0
## Hypericum.perforatum 0.16666667 0.0
## Hypnum.cupressiforme 0.25000000 0.2
## Hypnum.imponens 0.02777778 0.0
## Hypnum.jutlandicum 0.08333333 0.0
## Hypochaeris.radicata 0.00000000 0.2
## Kindbergia.praelonga 0.13888889 0.2
## Lathyrus.pratensis 0.08333333 0.0
## Leontodon.hispidus 0.13888889 0.0
## Leontodon.saxatilis 0.02777778 0.0
## Leucanthemum.vulgare 0.36111111 0.2
## Linum.catharticum 0.13888889 0.0
## Lolium.perenne 0.11111111 0.0
## Lophocolea.semiteres 0.02777778 0.0
## Lotus.corniculatus 0.44444444 0.4
## Luzula.multiflora 0.02777778 0.0
## Lysimachia.maritima 0.05555556 0.0
## Medicago.lupulina 0.13888889 0.0
## Myosotis.arvensis 0.08333333 0.4
## Ononis.repens 0.19444444 0.2
## Oxalis.acetosella 0.02777778 0.0
## Pastinaca.sativa 0.02777778 0.0
## Pentaglottis.sempervirens 0.02777778 0.0
## Pillosella.officinarum 0.25000000 0.6
## Plantago.coronopus 0.08333333 0.2
## Plantago.lanceolata 0.36111111 0.0
## Pleurozium.schreberi 0.11111111 0.0
## Poa.annua 0.08333333 0.0
## Poa.spp. 0.02777778 0.0
## Polytrichum.commune 0.02777778 0.0
## Polytrichum.commune.agg. 0.02777778 0.0
## Polytrichum.formosum 0.02777778 0.0
## Potentilla.reptans 0.11111111 0.0
## Prunella.vulgaris 0.13888889 0.0
## Pseudoscleropidum.purum 0.19444444 0.2
## Pteridium.aquilinum 0.08333333 0.0
## Ranunculus.acris 0.02777778 0.0
## Ranunculus.repens 0.05555556 0.2
## Reseda.lutea 0.02777778 0.0
## Rhinanthus.minor 0.02777778 0.0
## Rhizomnium.punctatum 0.02777778 0.0
## Rhytidadelphus.squarrosus 0.30555556 0.4
## Rhytidadelphus.triquetris 0.05555556 0.0
## Rubus.fruticosus 0.05555556 0.0
## Sanguisorba.minor.spp.minor 0.05555556 0.0
## Saniona.uncinata 0.05555556 0.0
## Sedum.anglicum 0.02777778 0.0
## Senecio.jacobaea 0.05555556 0.0
## Senecio.vulgaris 0.02777778 0.0
## Sonchus.arvensis 0.02777778 0.0
## Stachys.sylvatica 0.05555556 0.0
## Stellaria.apetala 0.02777778 0.0
## Taraxacum.agg. 0.25000000 0.4
## Thuidium.tamariscinum 0.08333333 0.0
## Thymus.polytrichus 0.16666667 0.4
## Trichostomum.crispulum 0.13888889 0.2
## Trifolium.campestre 0.16666667 0.2
## Trifolium.dubium 0.02777778 0.2
## Trifolium.pratense 0.11111111 0.0
## Trifolium.repens 0.11111111 0.2
## Trisetum.flavescens 0.11111111 0.0
## Tussilago.farfara 0.05555556 0.2
## Urtica.diocia 0.08333333 0.2
## Veronica.officinalis 0.02777778 0.0
## Vicia.sativa 0.02777778 0.0
## Viola.riviniana 0.02777778 0.0
## Weissia.controversa 0.02777778 0.0
## Zygodon.stirtonii 0.02777778 0.0
##
## $relabu
## 1 5
## Agrostis.spp. 0.238095238 0.76190476
## Agrostis.canina 1.000000000 0.00000000
## Alchemilla.mollis 1.000000000 0.00000000
## Alopercus.pratensis 1.000000000 0.00000000
## Angelica.sylvestris 0.121951220 0.87804878
## Anthoxanthum.odoratum 1.000000000 0.00000000
## Anthyllis.vulneraria 1.000000000 0.00000000
## Aphanes.arvensis 1.000000000 0.00000000
## Arrhenatherum.elatius 1.000000000 0.00000000
## Atrichum.undulatum 1.000000000 0.00000000
## Avenula.pratensis 1.000000000 0.00000000
## Bellis.perennis 1.000000000 0.00000000
## Betula.pubescens 1.000000000 0.00000000
## Blackstonia.perfoliata 1.000000000 0.00000000
## Brachythecium.albicans 1.000000000 0.00000000
## Brachythecium.glareosum 1.000000000 0.00000000
## Brachythecium.mildeanum 1.000000000 0.00000000
## Brachythecium.rutabulum 0.492957746 0.50704225
## Briza.media 0.692599620 0.30740038
## Bromus.hordeaceus 1.000000000 0.00000000
## Bryum.c.f..caespiticium 1.000000000 0.00000000
## Bryum.c.f..pallescens 0.162790698 0.83720930
## Bryum.capillare 1.000000000 0.00000000
## Bryum.spp. 1.000000000 0.00000000
## Calliergonella.cupsidata 0.300353357 0.69964664
## Calypogeia.arguta 0.486935867 0.51306413
## Campanula.rotundifolia 1.000000000 0.00000000
## Carex.distans 1.000000000 0.00000000
## Carex.flacca 1.000000000 0.00000000
## Carex.panicea 1.000000000 0.00000000
## Carlina.vulgaris 0.377969762 0.62203024
## Centaurea.nigra 1.000000000 0.00000000
## Centaurium.erythraea 1.000000000 0.00000000
## Centaurium.littorale 1.000000000 0.00000000
## Centaurium.pulchellum 1.000000000 0.00000000
## Cerastium.fontanum 0.433070866 0.56692913
## Chamaenerion.angustifolium 1.000000000 0.00000000
## Cirriphyllum.piliferum 1.000000000 0.00000000
## Cirsium.arvense 0.108359133 0.89164087
## Cirsium.palustre 1.000000000 0.00000000
## Crepis.capillaris 1.000000000 0.00000000
## Cynosurus.cristatus 1.000000000 0.00000000
## Dactylis.glomerata 0.730337079 0.26966292
## Dactylorhiza.fuchsii 1.000000000 0.00000000
## Danthonia.decumbens 1.000000000 0.00000000
## Daucus.carrota 1.000000000 0.00000000
## Dicranella.spp. 0.000000000 1.00000000
## Dicranum.scoparium 1.000000000 0.00000000
## Epilobium.montanum 1.000000000 0.00000000
## Equisetum.arvense 0.671981777 0.32801822
## Equisteum.variegatum 1.000000000 0.00000000
## Erigeron.acer 1.000000000 0.00000000
## Euphrasia.agg 1.000000000 0.00000000
## Festuca.ovina 0.466520307 0.53347969
## Festuca.rubra 0.545483975 0.45451602
## Festuca.rubra.agg. 1.000000000 0.00000000
## Filipendula.ulmaria 1.000000000 0.00000000
## Fissidens.adianthoides 1.000000000 0.00000000
## Fissidens.dubius 1.000000000 0.00000000
## Fissidens.exilis 0.000000000 1.00000000
## Fragaria.vesca 1.000000000 0.00000000
## Galium.aparine 1.000000000 0.00000000
## Galium.arvense 1.000000000 0.00000000
## Galium.saxatile 0.000000000 1.00000000
## Galium.verum 1.000000000 0.00000000
## Geum.urbanum 1.000000000 0.00000000
## Glechoma.hederacea 1.000000000 0.00000000
## Helicotrichon.spp. 1.000000000 0.00000000
## Heracleum.sphondylium 1.000000000 0.00000000
## Hieracium.spp. 1.000000000 0.00000000
## Holcus.spp. 0.462017435 0.53798257
## Holcus.lanatus 0.545454545 0.45454545
## Holcus.mollis 0.887412041 0.11258796
## Homalothecium.lutescens 0.008605852 0.99139415
## Hylocomium.splendens 1.000000000 0.00000000
## Hypericum.perforatum 1.000000000 0.00000000
## Hypnum.cupressiforme 0.294117647 0.70588235
## Hypnum.imponens 1.000000000 0.00000000
## Hypnum.jutlandicum 1.000000000 0.00000000
## Hypochaeris.radicata 0.000000000 1.00000000
## Kindbergia.praelonga 0.307692308 0.69230769
## Lathyrus.pratensis 1.000000000 0.00000000
## Leontodon.hispidus 1.000000000 0.00000000
## Leontodon.saxatilis 1.000000000 0.00000000
## Leucanthemum.vulgare 0.930902111 0.06909789
## Linum.catharticum 1.000000000 0.00000000
## Lolium.perenne 1.000000000 0.00000000
## Lophocolea.semiteres 1.000000000 0.00000000
## Lotus.corniculatus 0.757290687 0.24270931
## Luzula.multiflora 1.000000000 0.00000000
## Lysimachia.maritima 1.000000000 0.00000000
## Medicago.lupulina 1.000000000 0.00000000
## Myosotis.arvensis 0.151515152 0.84848485
## Ononis.repens 0.959021059 0.04097894
## Oxalis.acetosella 1.000000000 0.00000000
## Pastinaca.sativa 1.000000000 0.00000000
## Pentaglottis.sempervirens 1.000000000 0.00000000
## Pillosella.officinarum 0.078793336 0.92120666
## Plantago.coronopus 0.546719682 0.45328032
## Plantago.lanceolata 1.000000000 0.00000000
## Pleurozium.schreberi 1.000000000 0.00000000
## Poa.annua 1.000000000 0.00000000
## Poa.spp. 1.000000000 0.00000000
## Polytrichum.commune 1.000000000 0.00000000
## Polytrichum.commune.agg. 1.000000000 0.00000000
## Polytrichum.formosum 1.000000000 0.00000000
## Potentilla.reptans 1.000000000 0.00000000
## Prunella.vulgaris 1.000000000 0.00000000
## Pseudoscleropidum.purum 0.741626794 0.25837321
## Pteridium.aquilinum 1.000000000 0.00000000
## Ranunculus.acris 1.000000000 0.00000000
## Ranunculus.repens 0.795454545 0.20454545
## Reseda.lutea 1.000000000 0.00000000
## Rhinanthus.minor 1.000000000 0.00000000
## Rhizomnium.punctatum 1.000000000 0.00000000
## Rhytidadelphus.squarrosus 0.488454707 0.51154529
## Rhytidadelphus.triquetris 1.000000000 0.00000000
## Rubus.fruticosus 1.000000000 0.00000000
## Sanguisorba.minor.spp.minor 1.000000000 0.00000000
## Saniona.uncinata 1.000000000 0.00000000
## Sedum.anglicum 1.000000000 0.00000000
## Senecio.jacobaea 1.000000000 0.00000000
## Senecio.vulgaris 1.000000000 0.00000000
## Sonchus.arvensis 1.000000000 0.00000000
## Stachys.sylvatica 1.000000000 0.00000000
## Stellaria.apetala 1.000000000 0.00000000
## Taraxacum.agg. 0.604395604 0.39560440
## Thuidium.tamariscinum 1.000000000 0.00000000
## Thymus.polytrichus 0.714721122 0.28527888
## Trichostomum.crispulum 0.318416523 0.68158348
## Trifolium.campestre 0.654261705 0.34573830
## Trifolium.dubium 0.160142349 0.83985765
## Trifolium.pratense 1.000000000 0.00000000
## Trifolium.repens 0.259975816 0.74002418
## Trisetum.flavescens 1.000000000 0.00000000
## Tussilago.farfara 0.384615385 0.61538462
## Urtica.diocia 0.681818182 0.31818182
## Veronica.officinalis 1.000000000 0.00000000
## Vicia.sativa 1.000000000 0.00000000
## Viola.riviniana 1.000000000 0.00000000
## Weissia.controversa 1.000000000 0.00000000
## Zygodon.stirtonii 1.000000000 0.00000000
##
## $indval
## 1 5
## Agrostis.spp. 0.0462962963 0.152380952
## Agrostis.canina 0.0277777778 0.000000000
## Alchemilla.mollis 0.0277777778 0.000000000
## Alopercus.pratensis 0.0277777778 0.000000000
## Angelica.sylvestris 0.0033875339 0.175609756
## Anthoxanthum.odoratum 0.1666666667 0.000000000
## Anthyllis.vulneraria 0.1388888889 0.000000000
## Aphanes.arvensis 0.0833333333 0.000000000
## Arrhenatherum.elatius 0.2222222222 0.000000000
## Atrichum.undulatum 0.0555555556 0.000000000
## Avenula.pratensis 0.0277777778 0.000000000
## Bellis.perennis 0.3333333333 0.000000000
## Betula.pubescens 0.0277777778 0.000000000
## Blackstonia.perfoliata 0.0277777778 0.000000000
## Brachythecium.albicans 0.0277777778 0.000000000
## Brachythecium.glareosum 0.0277777778 0.000000000
## Brachythecium.mildeanum 0.1111111111 0.000000000
## Brachythecium.rutabulum 0.0684663537 0.101408451
## Briza.media 0.0384777567 0.061480076
## Bromus.hordeaceus 0.0277777778 0.000000000
## Bryum.c.f..caespiticium 0.0277777778 0.000000000
## Bryum.c.f..pallescens 0.0090439276 0.167441860
## Bryum.capillare 0.0277777778 0.000000000
## Bryum.spp. 0.0833333333 0.000000000
## Calliergonella.cupsidata 0.1084609344 0.279858657
## Calypogeia.arguta 0.0946819741 0.102612827
## Campanula.rotundifolia 0.0277777778 0.000000000
## Carex.distans 0.0555555556 0.000000000
## Carex.flacca 0.1944444444 0.000000000
## Carex.panicea 0.0277777778 0.000000000
## Carlina.vulgaris 0.0839932805 0.248812095
## Centaurea.nigra 0.0555555556 0.000000000
## Centaurium.erythraea 0.0555555556 0.000000000
## Centaurium.littorale 0.1111111111 0.000000000
## Centaurium.pulchellum 0.0277777778 0.000000000
## Cerastium.fontanum 0.0721784777 0.113385827
## Chamaenerion.angustifolium 0.0277777778 0.000000000
## Cirriphyllum.piliferum 0.0277777778 0.000000000
## Cirsium.arvense 0.0060199518 0.178328173
## Cirsium.palustre 0.0555555556 0.000000000
## Crepis.capillaris 0.0555555556 0.000000000
## Cynosurus.cristatus 0.0833333333 0.000000000
## Dactylis.glomerata 0.1014357054 0.053932584
## Dactylorhiza.fuchsii 0.0555555556 0.000000000
## Danthonia.decumbens 0.0277777778 0.000000000
## Daucus.carrota 0.0555555556 0.000000000
## Dicranella.spp. 0.0000000000 0.200000000
## Dicranum.scoparium 0.1388888889 0.000000000
## Epilobium.montanum 0.0833333333 0.000000000
## Equisetum.arvense 0.0373323209 0.065603645
## Equisteum.variegatum 0.0277777778 0.000000000
## Erigeron.acer 0.0555555556 0.000000000
## Euphrasia.agg 0.3055555556 0.000000000
## Festuca.ovina 0.0777533846 0.106695939
## Festuca.rubra 0.2121326571 0.090903205
## Festuca.rubra.agg. 0.0277777778 0.000000000
## Filipendula.ulmaria 0.0833333333 0.000000000
## Fissidens.adianthoides 0.0277777778 0.000000000
## Fissidens.dubius 0.0555555556 0.000000000
## Fissidens.exilis 0.0000000000 0.200000000
## Fragaria.vesca 0.1666666667 0.000000000
## Galium.aparine 0.0277777778 0.000000000
## Galium.arvense 0.0277777778 0.000000000
## Galium.saxatile 0.0000000000 0.200000000
## Galium.verum 0.1111111111 0.000000000
## Geum.urbanum 0.0277777778 0.000000000
## Glechoma.hederacea 0.0277777778 0.000000000
## Helicotrichon.spp. 0.0277777778 0.000000000
## Heracleum.sphondylium 0.0833333333 0.000000000
## Hieracium.spp. 0.0277777778 0.000000000
## Holcus.spp. 0.2438425349 0.215193026
## Holcus.lanatus 0.1666666667 0.090909091
## Holcus.mollis 0.1232516723 0.022517592
## Homalothecium.lutescens 0.0002390514 0.198278830
## Hylocomium.splendens 0.1944444444 0.000000000
## Hypericum.perforatum 0.1666666667 0.000000000
## Hypnum.cupressiforme 0.0735294118 0.141176471
## Hypnum.imponens 0.0277777778 0.000000000
## Hypnum.jutlandicum 0.0833333333 0.000000000
## Hypochaeris.radicata 0.0000000000 0.200000000
## Kindbergia.praelonga 0.0427350427 0.138461538
## Lathyrus.pratensis 0.0833333333 0.000000000
## Leontodon.hispidus 0.1388888889 0.000000000
## Leontodon.saxatilis 0.0277777778 0.000000000
## Leucanthemum.vulgare 0.3361590958 0.013819578
## Linum.catharticum 0.1388888889 0.000000000
## Lolium.perenne 0.1111111111 0.000000000
## Lophocolea.semiteres 0.0277777778 0.000000000
## Lotus.corniculatus 0.3365736385 0.097083725
## Luzula.multiflora 0.0277777778 0.000000000
## Lysimachia.maritima 0.0555555556 0.000000000
## Medicago.lupulina 0.1388888889 0.000000000
## Myosotis.arvensis 0.0126262626 0.339393939
## Ononis.repens 0.1864763170 0.008195788
## Oxalis.acetosella 0.0277777778 0.000000000
## Pastinaca.sativa 0.0277777778 0.000000000
## Pentaglottis.sempervirens 0.0277777778 0.000000000
## Pillosella.officinarum 0.0196983341 0.552723998
## Plantago.coronopus 0.0455599735 0.090656064
## Plantago.lanceolata 0.3611111111 0.000000000
## Pleurozium.schreberi 0.1111111111 0.000000000
## Poa.annua 0.0833333333 0.000000000
## Poa.spp. 0.0277777778 0.000000000
## Polytrichum.commune 0.0277777778 0.000000000
## Polytrichum.commune.agg. 0.0277777778 0.000000000
## Polytrichum.formosum 0.0277777778 0.000000000
## Potentilla.reptans 0.1111111111 0.000000000
## Prunella.vulgaris 0.1388888889 0.000000000
## Pseudoscleropidum.purum 0.1442052100 0.051674641
## Pteridium.aquilinum 0.0833333333 0.000000000
## Ranunculus.acris 0.0277777778 0.000000000
## Ranunculus.repens 0.0441919192 0.040909091
## Reseda.lutea 0.0277777778 0.000000000
## Rhinanthus.minor 0.0277777778 0.000000000
## Rhizomnium.punctatum 0.0277777778 0.000000000
## Rhytidadelphus.squarrosus 0.1492500493 0.204618117
## Rhytidadelphus.triquetris 0.0555555556 0.000000000
## Rubus.fruticosus 0.0555555556 0.000000000
## Sanguisorba.minor.spp.minor 0.0555555556 0.000000000
## Saniona.uncinata 0.0555555556 0.000000000
## Sedum.anglicum 0.0277777778 0.000000000
## Senecio.jacobaea 0.0555555556 0.000000000
## Senecio.vulgaris 0.0277777778 0.000000000
## Sonchus.arvensis 0.0277777778 0.000000000
## Stachys.sylvatica 0.0555555556 0.000000000
## Stellaria.apetala 0.0277777778 0.000000000
## Taraxacum.agg. 0.1510989011 0.158241758
## Thuidium.tamariscinum 0.0833333333 0.000000000
## Thymus.polytrichus 0.1191201869 0.114111551
## Trichostomum.crispulum 0.0442245171 0.136316695
## Trifolium.campestre 0.1090436174 0.069147659
## Trifolium.dubium 0.0044483986 0.167971530
## Trifolium.pratense 0.1111111111 0.000000000
## Trifolium.repens 0.0288862018 0.148004837
## Trisetum.flavescens 0.1111111111 0.000000000
## Tussilago.farfara 0.0213675214 0.123076923
## Urtica.diocia 0.0568181818 0.063636364
## Veronica.officinalis 0.0277777778 0.000000000
## Vicia.sativa 0.0277777778 0.000000000
## Viola.riviniana 0.0277777778 0.000000000
## Weissia.controversa 0.0277777778 0.000000000
## Zygodon.stirtonii 0.0277777778 0.000000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 2 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 2 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 2
## Briza.media Bromus.hordeaceus
## 2 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 2
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 2 2
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 2 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 2 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 2 1
## Epilobium.montanum Equisetum.arvense
## 1 2
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 2
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 2
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 2
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 1
## Holcus.mollis Homalothecium.lutescens
## 1 2
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 2 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 2
## Kindbergia.praelonga Lathyrus.pratensis
## 2 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 2 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 2
## Plantago.coronopus Plantago.lanceolata
## 2 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 2
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 2 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 2
## Trifolium.campestre Trifolium.dubium
## 1 2
## Trifolium.pratense Trifolium.repens
## 1 2
## Trisetum.flavescens Tussilago.farfara
## 1 2
## Urtica.diocia Veronica.officinalis
## 2 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.15238095 0.02777778
## Alchemilla.mollis Alopercus.pratensis
## 0.02777778 0.02777778
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.17560976 0.16666667
## Anthyllis.vulneraria Aphanes.arvensis
## 0.13888889 0.08333333
## Arrhenatherum.elatius Atrichum.undulatum
## 0.22222222 0.05555556
## Avenula.pratensis Bellis.perennis
## 0.02777778 0.33333333
## Betula.pubescens Blackstonia.perfoliata
## 0.02777778 0.02777778
## Brachythecium.albicans Brachythecium.glareosum
## 0.02777778 0.02777778
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.11111111 0.10140845
## Briza.media Bromus.hordeaceus
## 0.06148008 0.02777778
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.02777778 0.16744186
## Bryum.capillare Bryum.spp.
## 0.02777778 0.08333333
## Calliergonella.cupsidata Calypogeia.arguta
## 0.27985866 0.10261283
## Campanula.rotundifolia Carex.distans
## 0.02777778 0.05555556
## Carex.flacca Carex.panicea
## 0.19444444 0.02777778
## Carlina.vulgaris Centaurea.nigra
## 0.24881210 0.05555556
## Centaurium.erythraea Centaurium.littorale
## 0.05555556 0.11111111
## Centaurium.pulchellum Cerastium.fontanum
## 0.02777778 0.11338583
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.02777778 0.02777778
## Cirsium.arvense Cirsium.palustre
## 0.17832817 0.05555556
## Crepis.capillaris Cynosurus.cristatus
## 0.05555556 0.08333333
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.10143571 0.05555556
## Danthonia.decumbens Daucus.carrota
## 0.02777778 0.05555556
## Dicranella.spp. Dicranum.scoparium
## 0.20000000 0.13888889
## Epilobium.montanum Equisetum.arvense
## 0.08333333 0.06560364
## Equisteum.variegatum Erigeron.acer
## 0.02777778 0.05555556
## Euphrasia.agg Festuca.ovina
## 0.30555556 0.10669594
## Festuca.rubra Festuca.rubra.agg.
## 0.21213266 0.02777778
## Filipendula.ulmaria Fissidens.adianthoides
## 0.08333333 0.02777778
## Fissidens.dubius Fissidens.exilis
## 0.05555556 0.20000000
## Fragaria.vesca Galium.aparine
## 0.16666667 0.02777778
## Galium.arvense Galium.saxatile
## 0.02777778 0.20000000
## Galium.verum Geum.urbanum
## 0.11111111 0.02777778
## Glechoma.hederacea Helicotrichon.spp.
## 0.02777778 0.02777778
## Heracleum.sphondylium Hieracium.spp.
## 0.08333333 0.02777778
## Holcus.spp. Holcus.lanatus
## 0.24384253 0.16666667
## Holcus.mollis Homalothecium.lutescens
## 0.12325167 0.19827883
## Hylocomium.splendens Hypericum.perforatum
## 0.19444444 0.16666667
## Hypnum.cupressiforme Hypnum.imponens
## 0.14117647 0.02777778
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.08333333 0.20000000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.13846154 0.08333333
## Leontodon.hispidus Leontodon.saxatilis
## 0.13888889 0.02777778
## Leucanthemum.vulgare Linum.catharticum
## 0.33615910 0.13888889
## Lolium.perenne Lophocolea.semiteres
## 0.11111111 0.02777778
## Lotus.corniculatus Luzula.multiflora
## 0.33657364 0.02777778
## Lysimachia.maritima Medicago.lupulina
## 0.05555556 0.13888889
## Myosotis.arvensis Ononis.repens
## 0.33939394 0.18647632
## Oxalis.acetosella Pastinaca.sativa
## 0.02777778 0.02777778
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.02777778 0.55272400
## Plantago.coronopus Plantago.lanceolata
## 0.09065606 0.36111111
## Pleurozium.schreberi Poa.annua
## 0.11111111 0.08333333
## Poa.spp. Polytrichum.commune
## 0.02777778 0.02777778
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.02777778 0.02777778
## Potentilla.reptans Prunella.vulgaris
## 0.11111111 0.13888889
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.14420521 0.08333333
## Ranunculus.acris Ranunculus.repens
## 0.02777778 0.04419192
## Reseda.lutea Rhinanthus.minor
## 0.02777778 0.02777778
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.02777778 0.20461812
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.05555556 0.05555556
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.05555556 0.05555556
## Sedum.anglicum Senecio.jacobaea
## 0.02777778 0.05555556
## Senecio.vulgaris Sonchus.arvensis
## 0.02777778 0.02777778
## Stachys.sylvatica Stellaria.apetala
## 0.05555556 0.02777778
## Taraxacum.agg. Thuidium.tamariscinum
## 0.15824176 0.08333333
## Thymus.polytrichus Trichostomum.crispulum
## 0.11912019 0.13631670
## Trifolium.campestre Trifolium.dubium
## 0.10904362 0.16797153
## Trifolium.pratense Trifolium.repens
## 0.11111111 0.14800484
## Trisetum.flavescens Tussilago.farfara
## 0.11111111 0.12307692
## Urtica.diocia Veronica.officinalis
## 0.06363636 0.02777778
## Vicia.sativa Viola.riviniana
## 0.02777778 0.02777778
## Weissia.controversa Zygodon.stirtonii
## 0.02777778 0.02777778
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.793 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.242 0.564
## Anthyllis.vulneraria Aphanes.arvensis
## 0.801 0.906
## Arrhenatherum.elatius Atrichum.undulatum
## 0.429 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.263
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.820 1.000
## Briza.media Bromus.hordeaceus
## 0.888 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 0.213
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.536 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.522 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.465 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 0.901
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.667
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 0.139 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.928 0.880
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 0.112 0.692
## Epilobium.montanum Equisetum.arvense
## 0.892 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.382 0.889
## Festuca.rubra Festuca.rubra.agg.
## 0.807 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 0.145
## Fragaria.vesca Galium.aparine
## 0.604 1.000
## Galium.arvense Galium.saxatile
## 1.000 0.125
## Galium.verum Geum.urbanum
## 0.811 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.970 0.879
## Holcus.mollis Homalothecium.lutescens
## 0.862 0.120
## Hylocomium.splendens Hypericum.perforatum
## 0.568 0.533
## Hypnum.cupressiforme Hypnum.imponens
## 0.888 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.915 0.137
## Kindbergia.praelonga Lathyrus.pratensis
## 0.786 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 0.782 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.337 0.870
## Lolium.perenne Lophocolea.semiteres
## 0.734 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.468 1.000
## Lysimachia.maritima Medicago.lupulina
## 0.903 0.668
## Myosotis.arvensis Ononis.repens
## 0.048 0.675
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.022
## Plantago.coronopus Plantago.lanceolata
## 0.901 0.245
## Pleurozium.schreberi Poa.annua
## 0.904 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 0.738 0.684
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.729 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.725
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.887 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.948 0.713
## Trifolium.campestre Trifolium.dubium
## 0.951 0.254
## Trifolium.pratense Trifolium.repens
## 0.821 0.243
## Trisetum.flavescens Tussilago.farfara
## 0.717 0.235
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#In the PericlaseIndvalsummary, only Pilosella officinarum is reported as an indicator #species. It has an indval number of 0.553 and a low p value of 0.019. Therefore, Pilosella #officinarum is the indicator species for Periclase.
#So far, the tests carried out have been for some of the most common minerals in the #samples. It will be interesting to see whether or not indicator species can be reported #for minerals which were much less commonly recorded on the study sites, including minerals #that were recorded only once in any one of the study sites.
#Looking at Akermanite….
clustAkermanite <-cut(PlantChemistry1$Akermanite, 5, labels=FALSE)
AkermaniteIndval <- indval(as.matrix(PlantSpecies1), clustAkermanite, type= "long")
gr <- AkermaniteIndval$maxcls[AkermaniteIndval$pval<=0.05]
iv <- AkermaniteIndval$indcls[AkermaniteIndval$pval<=0.05]
pv <- AkermaniteIndval$pval[AkermaniteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[AkermaniteIndval$pval<=0.05]
AkermaniteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
AkermaniteIndvalsummary <- AkermaniteIndvalsummary[order(AkermaniteIndvalsummary$group,
-AkermaniteIndvalsummary$indval),]
print(AkermaniteIndvalsummary)
## group indval pvalue freq
## Linum.catharticum 2 0.6262172 0.008 4
## Carlina.vulgaris 2 0.6007905 0.032 2
## Euphrasia.agg 2 0.5929615 0.024 7
summary(indval(as.matrix(PlantSpecies1), clustAkermanite))
## cluster indicator_value probability
## Linum.catharticum 2 0.6262 0.009
## Carlina.vulgaris 2 0.6008 0.016
## Euphrasia.agg 2 0.5930 0.015
##
## Sum of probabilities = 116.799
##
## Sum of Indicator Values = 17.58
##
## Sum of Significant Indicator Values = 1.82
##
## Number of Significant Indicators = 3
##
## Significant Indicator Distribution
##
## 2
## 3
print(indval(as.matrix(PlantSpecies1), clustAkermanite))
## $relfrq
## 1 5
## Agrostis.spp. 0.21052632 0.0000000
## Agrostis.canina 0.02631579 0.0000000
## Alchemilla.mollis 0.02631579 0.0000000
## Alopercus.pratensis 0.02631579 0.0000000
## Angelica.sylvestris 0.05263158 0.0000000
## Anthoxanthum.odoratum 0.15789474 0.0000000
## Anthyllis.vulneraria 0.13157895 0.0000000
## Aphanes.arvensis 0.07894737 0.0000000
## Arrhenatherum.elatius 0.18421053 0.3333333
## Atrichum.undulatum 0.05263158 0.0000000
## Avenula.pratensis 0.02631579 0.0000000
## Bellis.perennis 0.31578947 0.0000000
## Betula.pubescens 0.02631579 0.0000000
## Blackstonia.perfoliata 0.02631579 0.0000000
## Brachythecium.albicans 0.02631579 0.0000000
## Brachythecium.glareosum 0.02631579 0.0000000
## Brachythecium.mildeanum 0.10526316 0.0000000
## Brachythecium.rutabulum 0.15789474 0.0000000
## Briza.media 0.07894737 0.0000000
## Bromus.hordeaceus 0.02631579 0.0000000
## Bryum.c.f..caespiticium 0.02631579 0.0000000
## Bryum.c.f..pallescens 0.05263158 0.3333333
## Bryum.capillare 0.02631579 0.0000000
## Bryum.spp. 0.07894737 0.0000000
## Calliergonella.cupsidata 0.39473684 0.0000000
## Calypogeia.arguta 0.21052632 0.0000000
## Campanula.rotundifolia 0.02631579 0.0000000
## Carex.distans 0.05263158 0.0000000
## Carex.flacca 0.15789474 0.3333333
## Carex.panicea 0.02631579 0.0000000
## Carlina.vulgaris 0.21052632 0.6666667
## Centaurea.nigra 0.05263158 0.0000000
## Centaurium.erythraea 0.05263158 0.0000000
## Centaurium.littorale 0.07894737 0.3333333
## Centaurium.pulchellum 0.02631579 0.0000000
## Cerastium.fontanum 0.15789474 0.3333333
## Chamaenerion.angustifolium 0.02631579 0.0000000
## Cirriphyllum.piliferum 0.02631579 0.0000000
## Cirsium.arvense 0.07894737 0.0000000
## Cirsium.palustre 0.05263158 0.0000000
## Crepis.capillaris 0.05263158 0.0000000
## Cynosurus.cristatus 0.07894737 0.0000000
## Dactylis.glomerata 0.13157895 0.3333333
## Dactylorhiza.fuchsii 0.05263158 0.0000000
## Danthonia.decumbens 0.02631579 0.0000000
## Daucus.carrota 0.05263158 0.0000000
## Dicranella.spp. 0.02631579 0.0000000
## Dicranum.scoparium 0.13157895 0.0000000
## Epilobium.montanum 0.07894737 0.0000000
## Equisetum.arvense 0.07894737 0.0000000
## Equisteum.variegatum 0.02631579 0.0000000
## Erigeron.acer 0.05263158 0.0000000
## Euphrasia.agg 0.23684211 0.6666667
## Festuca.ovina 0.15789474 0.3333333
## Festuca.rubra 0.36842105 0.3333333
## Festuca.rubra.agg. 0.02631579 0.0000000
## Filipendula.ulmaria 0.07894737 0.0000000
## Fissidens.adianthoides 0.02631579 0.0000000
## Fissidens.dubius 0.05263158 0.0000000
## Fissidens.exilis 0.02631579 0.0000000
## Fragaria.vesca 0.15789474 0.0000000
## Galium.aparine 0.02631579 0.0000000
## Galium.arvense 0.02631579 0.0000000
## Galium.saxatile 0.00000000 0.3333333
## Galium.verum 0.10526316 0.0000000
## Geum.urbanum 0.02631579 0.0000000
## Glechoma.hederacea 0.02631579 0.0000000
## Helicotrichon.spp. 0.02631579 0.0000000
## Heracleum.sphondylium 0.07894737 0.0000000
## Hieracium.spp. 0.02631579 0.0000000
## Holcus.spp. 0.47368421 1.0000000
## Holcus.lanatus 0.31578947 0.0000000
## Holcus.mollis 0.15789474 0.0000000
## Homalothecium.lutescens 0.02631579 0.3333333
## Hylocomium.splendens 0.18421053 0.0000000
## Hypericum.perforatum 0.15789474 0.0000000
## Hypnum.cupressiforme 0.23684211 0.3333333
## Hypnum.imponens 0.02631579 0.0000000
## Hypnum.jutlandicum 0.07894737 0.0000000
## Hypochaeris.radicata 0.02631579 0.0000000
## Kindbergia.praelonga 0.15789474 0.0000000
## Lathyrus.pratensis 0.07894737 0.0000000
## Leontodon.hispidus 0.10526316 0.3333333
## Leontodon.saxatilis 0.02631579 0.0000000
## Leucanthemum.vulgare 0.36842105 0.0000000
## Linum.catharticum 0.07894737 0.6666667
## Lolium.perenne 0.10526316 0.0000000
## Lophocolea.semiteres 0.02631579 0.0000000
## Lotus.corniculatus 0.44736842 0.3333333
## Luzula.multiflora 0.02631579 0.0000000
## Lysimachia.maritima 0.05263158 0.0000000
## Medicago.lupulina 0.13157895 0.0000000
## Myosotis.arvensis 0.10526316 0.3333333
## Ononis.repens 0.18421053 0.3333333
## Oxalis.acetosella 0.02631579 0.0000000
## Pastinaca.sativa 0.02631579 0.0000000
## Pentaglottis.sempervirens 0.02631579 0.0000000
## Pillosella.officinarum 0.26315789 0.6666667
## Plantago.coronopus 0.07894737 0.3333333
## Plantago.lanceolata 0.28947368 0.6666667
## Pleurozium.schreberi 0.10526316 0.0000000
## Poa.annua 0.07894737 0.0000000
## Poa.spp. 0.02631579 0.0000000
## Polytrichum.commune 0.02631579 0.0000000
## Polytrichum.commune.agg. 0.02631579 0.0000000
## Polytrichum.formosum 0.02631579 0.0000000
## Potentilla.reptans 0.10526316 0.0000000
## Prunella.vulgaris 0.10526316 0.3333333
## Pseudoscleropidum.purum 0.18421053 0.3333333
## Pteridium.aquilinum 0.07894737 0.0000000
## Ranunculus.acris 0.02631579 0.0000000
## Ranunculus.repens 0.07894737 0.0000000
## Reseda.lutea 0.02631579 0.0000000
## Rhinanthus.minor 0.02631579 0.0000000
## Rhizomnium.punctatum 0.02631579 0.0000000
## Rhytidadelphus.squarrosus 0.28947368 0.6666667
## Rhytidadelphus.triquetris 0.05263158 0.0000000
## Rubus.fruticosus 0.05263158 0.0000000
## Sanguisorba.minor.spp.minor 0.05263158 0.0000000
## Saniona.uncinata 0.05263158 0.0000000
## Sedum.anglicum 0.02631579 0.0000000
## Senecio.jacobaea 0.05263158 0.0000000
## Senecio.vulgaris 0.02631579 0.0000000
## Sonchus.arvensis 0.02631579 0.0000000
## Stachys.sylvatica 0.05263158 0.0000000
## Stellaria.apetala 0.02631579 0.0000000
## Taraxacum.agg. 0.23684211 0.6666667
## Thuidium.tamariscinum 0.07894737 0.0000000
## Thymus.polytrichus 0.18421053 0.3333333
## Trichostomum.crispulum 0.13157895 0.3333333
## Trifolium.campestre 0.18421053 0.0000000
## Trifolium.dubium 0.02631579 0.3333333
## Trifolium.pratense 0.07894737 0.3333333
## Trifolium.repens 0.13157895 0.0000000
## Trisetum.flavescens 0.10526316 0.0000000
## Tussilago.farfara 0.07894737 0.0000000
## Urtica.diocia 0.07894737 0.3333333
## Veronica.officinalis 0.02631579 0.0000000
## Vicia.sativa 0.02631579 0.0000000
## Viola.riviniana 0.02631579 0.0000000
## Weissia.controversa 0.02631579 0.0000000
## Zygodon.stirtonii 0.02631579 0.0000000
##
## $relabu
## 1 5
## Agrostis.spp. 1.000000000 0.0000000
## Agrostis.canina 1.000000000 0.0000000
## Alchemilla.mollis 1.000000000 0.0000000
## Alopercus.pratensis 1.000000000 0.0000000
## Angelica.sylvestris 1.000000000 0.0000000
## Anthoxanthum.odoratum 1.000000000 0.0000000
## Anthyllis.vulneraria 1.000000000 0.0000000
## Aphanes.arvensis 1.000000000 0.0000000
## Arrhenatherum.elatius 0.836909871 0.1630901
## Atrichum.undulatum 1.000000000 0.0000000
## Avenula.pratensis 1.000000000 0.0000000
## Bellis.perennis 1.000000000 0.0000000
## Betula.pubescens 1.000000000 0.0000000
## Blackstonia.perfoliata 1.000000000 0.0000000
## Brachythecium.albicans 1.000000000 0.0000000
## Brachythecium.glareosum 1.000000000 0.0000000
## Brachythecium.mildeanum 1.000000000 0.0000000
## Brachythecium.rutabulum 1.000000000 0.0000000
## Briza.media 1.000000000 0.0000000
## Bromus.hordeaceus 1.000000000 0.0000000
## Bryum.c.f..caespiticium 1.000000000 0.0000000
## Bryum.c.f..pallescens 0.073170732 0.9268293
## Bryum.capillare 1.000000000 0.0000000
## Bryum.spp. 1.000000000 0.0000000
## Calliergonella.cupsidata 1.000000000 0.0000000
## Calypogeia.arguta 1.000000000 0.0000000
## Campanula.rotundifolia 1.000000000 0.0000000
## Carex.distans 1.000000000 0.0000000
## Carex.flacca 0.886056972 0.1139430
## Carex.panicea 1.000000000 0.0000000
## Carlina.vulgaris 0.098814229 0.9011858
## Centaurea.nigra 1.000000000 0.0000000
## Centaurium.erythraea 1.000000000 0.0000000
## Centaurium.littorale 0.506493506 0.4935065
## Centaurium.pulchellum 1.000000000 0.0000000
## Cerastium.fontanum 0.486486486 0.5135135
## Chamaenerion.angustifolium 1.000000000 0.0000000
## Cirriphyllum.piliferum 1.000000000 0.0000000
## Cirsium.arvense 1.000000000 0.0000000
## Cirsium.palustre 1.000000000 0.0000000
## Crepis.capillaris 1.000000000 0.0000000
## Cynosurus.cristatus 1.000000000 0.0000000
## Dactylis.glomerata 0.362416107 0.6375839
## Dactylorhiza.fuchsii 1.000000000 0.0000000
## Danthonia.decumbens 1.000000000 0.0000000
## Daucus.carrota 1.000000000 0.0000000
## Dicranella.spp. 1.000000000 0.0000000
## Dicranum.scoparium 1.000000000 0.0000000
## Epilobium.montanum 1.000000000 0.0000000
## Equisetum.arvense 1.000000000 0.0000000
## Equisteum.variegatum 1.000000000 0.0000000
## Erigeron.acer 1.000000000 0.0000000
## Euphrasia.agg 0.110557769 0.8894422
## Festuca.ovina 0.332031250 0.6679688
## Festuca.rubra 0.450722733 0.5492773
## Festuca.rubra.agg. 1.000000000 0.0000000
## Filipendula.ulmaria 1.000000000 0.0000000
## Fissidens.adianthoides 1.000000000 0.0000000
## Fissidens.dubius 1.000000000 0.0000000
## Fissidens.exilis 1.000000000 0.0000000
## Fragaria.vesca 1.000000000 0.0000000
## Galium.aparine 1.000000000 0.0000000
## Galium.arvense 1.000000000 0.0000000
## Galium.saxatile 0.000000000 1.0000000
## Galium.verum 1.000000000 0.0000000
## Geum.urbanum 1.000000000 0.0000000
## Glechoma.hederacea 1.000000000 0.0000000
## Helicotrichon.spp. 1.000000000 0.0000000
## Heracleum.sphondylium 1.000000000 0.0000000
## Hieracium.spp. 1.000000000 0.0000000
## Holcus.spp. 0.323803967 0.6761960
## Holcus.lanatus 1.000000000 0.0000000
## Holcus.mollis 1.000000000 0.0000000
## Homalothecium.lutescens 0.004909984 0.9950900
## Hylocomium.splendens 1.000000000 0.0000000
## Hypericum.perforatum 1.000000000 0.0000000
## Hypnum.cupressiforme 0.415384615 0.5846154
## Hypnum.imponens 1.000000000 0.0000000
## Hypnum.jutlandicum 1.000000000 0.0000000
## Hypochaeris.radicata 1.000000000 0.0000000
## Kindbergia.praelonga 1.000000000 0.0000000
## Lathyrus.pratensis 1.000000000 0.0000000
## Leontodon.hispidus 0.108078603 0.8919214
## Leontodon.saxatilis 1.000000000 0.0000000
## Leucanthemum.vulgare 1.000000000 0.0000000
## Linum.catharticum 0.060674157 0.9393258
## Lolium.perenne 1.000000000 0.0000000
## Lophocolea.semiteres 1.000000000 0.0000000
## Lotus.corniculatus 0.796082640 0.2039174
## Luzula.multiflora 1.000000000 0.0000000
## Lysimachia.maritima 1.000000000 0.0000000
## Medicago.lupulina 1.000000000 0.0000000
## Myosotis.arvensis 0.116279070 0.8837209
## Ononis.repens 0.930082797 0.0699172
## Oxalis.acetosella 1.000000000 0.0000000
## Pastinaca.sativa 1.000000000 0.0000000
## Pentaglottis.sempervirens 1.000000000 0.0000000
## Pillosella.officinarum 0.296296296 0.7037037
## Plantago.coronopus 0.406737880 0.5932621
## Plantago.lanceolata 0.232323232 0.7676768
## Pleurozium.schreberi 1.000000000 0.0000000
## Poa.annua 1.000000000 0.0000000
## Poa.spp. 1.000000000 0.0000000
## Polytrichum.commune 1.000000000 0.0000000
## Polytrichum.commune.agg. 1.000000000 0.0000000
## Polytrichum.formosum 1.000000000 0.0000000
## Potentilla.reptans 1.000000000 0.0000000
## Prunella.vulgaris 0.283018868 0.7169811
## Pseudoscleropidum.purum 0.620000000 0.3800000
## Pteridium.aquilinum 1.000000000 0.0000000
## Ranunculus.acris 1.000000000 0.0000000
## Ranunculus.repens 1.000000000 0.0000000
## Reseda.lutea 1.000000000 0.0000000
## Rhinanthus.minor 1.000000000 0.0000000
## Rhizomnium.punctatum 1.000000000 0.0000000
## Rhytidadelphus.squarrosus 0.294990724 0.7050093
## Rhytidadelphus.triquetris 1.000000000 0.0000000
## Rubus.fruticosus 1.000000000 0.0000000
## Sanguisorba.minor.spp.minor 1.000000000 0.0000000
## Saniona.uncinata 1.000000000 0.0000000
## Sedum.anglicum 1.000000000 0.0000000
## Senecio.jacobaea 1.000000000 0.0000000
## Senecio.vulgaris 1.000000000 0.0000000
## Sonchus.arvensis 1.000000000 0.0000000
## Stachys.sylvatica 1.000000000 0.0000000
## Stellaria.apetala 1.000000000 0.0000000
## Taraxacum.agg. 0.464788732 0.5352113
## Thuidium.tamariscinum 1.000000000 0.0000000
## Thymus.polytrichus 0.164737864 0.8352621
## Trichostomum.crispulum 0.355932203 0.6440678
## Trifolium.campestre 1.000000000 0.0000000
## Trifolium.dubium 0.054377880 0.9456221
## Trifolium.pratense 0.029197080 0.9708029
## Trifolium.repens 1.000000000 0.0000000
## Trisetum.flavescens 1.000000000 0.0000000
## Tussilago.farfara 1.000000000 0.0000000
## Urtica.diocia 0.549152542 0.4508475
## Veronica.officinalis 1.000000000 0.0000000
## Vicia.sativa 1.000000000 0.0000000
## Viola.riviniana 1.000000000 0.0000000
## Weissia.controversa 1.000000000 0.0000000
## Zygodon.stirtonii 1.000000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.2105263158 0.00000000
## Agrostis.canina 0.0263157895 0.00000000
## Alchemilla.mollis 0.0263157895 0.00000000
## Alopercus.pratensis 0.0263157895 0.00000000
## Angelica.sylvestris 0.0526315789 0.00000000
## Anthoxanthum.odoratum 0.1578947368 0.00000000
## Anthyllis.vulneraria 0.1315789474 0.00000000
## Aphanes.arvensis 0.0789473684 0.00000000
## Arrhenatherum.elatius 0.1541676079 0.05436338
## Atrichum.undulatum 0.0526315789 0.00000000
## Avenula.pratensis 0.0263157895 0.00000000
## Bellis.perennis 0.3157894737 0.00000000
## Betula.pubescens 0.0263157895 0.00000000
## Blackstonia.perfoliata 0.0263157895 0.00000000
## Brachythecium.albicans 0.0263157895 0.00000000
## Brachythecium.glareosum 0.0263157895 0.00000000
## Brachythecium.mildeanum 0.1052631579 0.00000000
## Brachythecium.rutabulum 0.1578947368 0.00000000
## Briza.media 0.0789473684 0.00000000
## Bromus.hordeaceus 0.0263157895 0.00000000
## Bryum.c.f..caespiticium 0.0263157895 0.00000000
## Bryum.c.f..pallescens 0.0038510911 0.30894309
## Bryum.capillare 0.0263157895 0.00000000
## Bryum.spp. 0.0789473684 0.00000000
## Calliergonella.cupsidata 0.3947368421 0.00000000
## Calypogeia.arguta 0.2105263158 0.00000000
## Campanula.rotundifolia 0.0263157895 0.00000000
## Carex.distans 0.0526315789 0.00000000
## Carex.flacca 0.1399037323 0.03798101
## Carex.panicea 0.0263157895 0.00000000
## Carlina.vulgaris 0.0208029956 0.60079051
## Centaurea.nigra 0.0526315789 0.00000000
## Centaurium.erythraea 0.0526315789 0.00000000
## Centaurium.littorale 0.0399863295 0.16450216
## Centaurium.pulchellum 0.0263157895 0.00000000
## Cerastium.fontanum 0.0768136558 0.17117117
## Chamaenerion.angustifolium 0.0263157895 0.00000000
## Cirriphyllum.piliferum 0.0263157895 0.00000000
## Cirsium.arvense 0.0789473684 0.00000000
## Cirsium.palustre 0.0526315789 0.00000000
## Crepis.capillaris 0.0526315789 0.00000000
## Cynosurus.cristatus 0.0789473684 0.00000000
## Dactylis.glomerata 0.0476863299 0.21252796
## Dactylorhiza.fuchsii 0.0526315789 0.00000000
## Danthonia.decumbens 0.0263157895 0.00000000
## Daucus.carrota 0.0526315789 0.00000000
## Dicranella.spp. 0.0263157895 0.00000000
## Dicranum.scoparium 0.1315789474 0.00000000
## Epilobium.montanum 0.0789473684 0.00000000
## Equisetum.arvense 0.0789473684 0.00000000
## Equisteum.variegatum 0.0263157895 0.00000000
## Erigeron.acer 0.0526315789 0.00000000
## Euphrasia.agg 0.0261847347 0.59296149
## Festuca.ovina 0.0524259868 0.22265625
## Festuca.rubra 0.1660557438 0.18309242
## Festuca.rubra.agg. 0.0263157895 0.00000000
## Filipendula.ulmaria 0.0789473684 0.00000000
## Fissidens.adianthoides 0.0263157895 0.00000000
## Fissidens.dubius 0.0526315789 0.00000000
## Fissidens.exilis 0.0263157895 0.00000000
## Fragaria.vesca 0.1578947368 0.00000000
## Galium.aparine 0.0263157895 0.00000000
## Galium.arvense 0.0263157895 0.00000000
## Galium.saxatile 0.0000000000 0.33333333
## Galium.verum 0.1052631579 0.00000000
## Geum.urbanum 0.0263157895 0.00000000
## Glechoma.hederacea 0.0263157895 0.00000000
## Helicotrichon.spp. 0.0263157895 0.00000000
## Heracleum.sphondylium 0.0789473684 0.00000000
## Hieracium.spp. 0.0263157895 0.00000000
## Holcus.spp. 0.1533808266 0.67619603
## Holcus.lanatus 0.3157894737 0.00000000
## Holcus.mollis 0.1578947368 0.00000000
## Homalothecium.lutescens 0.0001292101 0.33169667
## Hylocomium.splendens 0.1842105263 0.00000000
## Hypericum.perforatum 0.1578947368 0.00000000
## Hypnum.cupressiforme 0.0983805668 0.19487179
## Hypnum.imponens 0.0263157895 0.00000000
## Hypnum.jutlandicum 0.0789473684 0.00000000
## Hypochaeris.radicata 0.0263157895 0.00000000
## Kindbergia.praelonga 0.1578947368 0.00000000
## Lathyrus.pratensis 0.0789473684 0.00000000
## Leontodon.hispidus 0.0113766950 0.29730713
## Leontodon.saxatilis 0.0263157895 0.00000000
## Leucanthemum.vulgare 0.3684210526 0.00000000
## Linum.catharticum 0.0047900651 0.62621723
## Lolium.perenne 0.1052631579 0.00000000
## Lophocolea.semiteres 0.0263157895 0.00000000
## Lotus.corniculatus 0.3561422338 0.06797245
## Luzula.multiflora 0.0263157895 0.00000000
## Lysimachia.maritima 0.0526315789 0.00000000
## Medicago.lupulina 0.1315789474 0.00000000
## Myosotis.arvensis 0.0122399021 0.29457364
## Ononis.repens 0.1713310415 0.02330573
## Oxalis.acetosella 0.0263157895 0.00000000
## Pastinaca.sativa 0.0263157895 0.00000000
## Pentaglottis.sempervirens 0.0263157895 0.00000000
## Pillosella.officinarum 0.0779727096 0.46913580
## Plantago.coronopus 0.0321108853 0.19775404
## Plantago.lanceolata 0.0672514620 0.51178451
## Pleurozium.schreberi 0.1052631579 0.00000000
## Poa.annua 0.0789473684 0.00000000
## Poa.spp. 0.0263157895 0.00000000
## Polytrichum.commune 0.0263157895 0.00000000
## Polytrichum.commune.agg. 0.0263157895 0.00000000
## Polytrichum.formosum 0.0263157895 0.00000000
## Potentilla.reptans 0.1052631579 0.00000000
## Prunella.vulgaris 0.0297914598 0.23899371
## Pseudoscleropidum.purum 0.1142105263 0.12666667
## Pteridium.aquilinum 0.0789473684 0.00000000
## Ranunculus.acris 0.0263157895 0.00000000
## Ranunculus.repens 0.0789473684 0.00000000
## Reseda.lutea 0.0263157895 0.00000000
## Rhinanthus.minor 0.0263157895 0.00000000
## Rhizomnium.punctatum 0.0263157895 0.00000000
## Rhytidadelphus.squarrosus 0.0853920516 0.47000618
## Rhytidadelphus.triquetris 0.0526315789 0.00000000
## Rubus.fruticosus 0.0526315789 0.00000000
## Sanguisorba.minor.spp.minor 0.0526315789 0.00000000
## Saniona.uncinata 0.0526315789 0.00000000
## Sedum.anglicum 0.0263157895 0.00000000
## Senecio.jacobaea 0.0526315789 0.00000000
## Senecio.vulgaris 0.0263157895 0.00000000
## Sonchus.arvensis 0.0263157895 0.00000000
## Stachys.sylvatica 0.0526315789 0.00000000
## Stellaria.apetala 0.0263157895 0.00000000
## Taraxacum.agg. 0.1100815419 0.35680751
## Thuidium.tamariscinum 0.0789473684 0.00000000
## Thymus.polytrichus 0.0303464486 0.27842071
## Trichostomum.crispulum 0.0468331847 0.21468927
## Trifolium.campestre 0.1842105263 0.00000000
## Trifolium.dubium 0.0014309968 0.31520737
## Trifolium.pratense 0.0023050327 0.32360097
## Trifolium.repens 0.1315789474 0.00000000
## Trisetum.flavescens 0.1052631579 0.00000000
## Tussilago.farfara 0.0789473684 0.00000000
## Urtica.diocia 0.0433541481 0.15028249
## Veronica.officinalis 0.0263157895 0.00000000
## Vicia.sativa 0.0263157895 0.00000000
## Viola.riviniana 0.0263157895 0.00000000
## Weissia.controversa 0.0263157895 0.00000000
## Zygodon.stirtonii 0.0263157895 0.00000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 2
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 2 1
## Centaurium.erythraea Centaurium.littorale
## 1 2
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 2 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 2 2
## Festuca.rubra Festuca.rubra.agg.
## 2 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 2
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 2 1
## Holcus.mollis Homalothecium.lutescens
## 1 2
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 2 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 2 1
## Leucanthemum.vulgare Linum.catharticum
## 1 2
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 2 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 2
## Plantago.coronopus Plantago.lanceolata
## 2 2
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 2
## Pseudoscleropidum.purum Pteridium.aquilinum
## 2 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 2
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 2 1
## Thymus.polytrichus Trichostomum.crispulum
## 2 2
## Trifolium.campestre Trifolium.dubium
## 1 2
## Trifolium.pratense Trifolium.repens
## 2 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 2 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.21052632 0.02631579
## Alchemilla.mollis Alopercus.pratensis
## 0.02631579 0.02631579
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.05263158 0.15789474
## Anthyllis.vulneraria Aphanes.arvensis
## 0.13157895 0.07894737
## Arrhenatherum.elatius Atrichum.undulatum
## 0.15416761 0.05263158
## Avenula.pratensis Bellis.perennis
## 0.02631579 0.31578947
## Betula.pubescens Blackstonia.perfoliata
## 0.02631579 0.02631579
## Brachythecium.albicans Brachythecium.glareosum
## 0.02631579 0.02631579
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.10526316 0.15789474
## Briza.media Bromus.hordeaceus
## 0.07894737 0.02631579
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.02631579 0.30894309
## Bryum.capillare Bryum.spp.
## 0.02631579 0.07894737
## Calliergonella.cupsidata Calypogeia.arguta
## 0.39473684 0.21052632
## Campanula.rotundifolia Carex.distans
## 0.02631579 0.05263158
## Carex.flacca Carex.panicea
## 0.13990373 0.02631579
## Carlina.vulgaris Centaurea.nigra
## 0.60079051 0.05263158
## Centaurium.erythraea Centaurium.littorale
## 0.05263158 0.16450216
## Centaurium.pulchellum Cerastium.fontanum
## 0.02631579 0.17117117
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.02631579 0.02631579
## Cirsium.arvense Cirsium.palustre
## 0.07894737 0.05263158
## Crepis.capillaris Cynosurus.cristatus
## 0.05263158 0.07894737
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.21252796 0.05263158
## Danthonia.decumbens Daucus.carrota
## 0.02631579 0.05263158
## Dicranella.spp. Dicranum.scoparium
## 0.02631579 0.13157895
## Epilobium.montanum Equisetum.arvense
## 0.07894737 0.07894737
## Equisteum.variegatum Erigeron.acer
## 0.02631579 0.05263158
## Euphrasia.agg Festuca.ovina
## 0.59296149 0.22265625
## Festuca.rubra Festuca.rubra.agg.
## 0.18309242 0.02631579
## Filipendula.ulmaria Fissidens.adianthoides
## 0.07894737 0.02631579
## Fissidens.dubius Fissidens.exilis
## 0.05263158 0.02631579
## Fragaria.vesca Galium.aparine
## 0.15789474 0.02631579
## Galium.arvense Galium.saxatile
## 0.02631579 0.33333333
## Galium.verum Geum.urbanum
## 0.10526316 0.02631579
## Glechoma.hederacea Helicotrichon.spp.
## 0.02631579 0.02631579
## Heracleum.sphondylium Hieracium.spp.
## 0.07894737 0.02631579
## Holcus.spp. Holcus.lanatus
## 0.67619603 0.31578947
## Holcus.mollis Homalothecium.lutescens
## 0.15789474 0.33169667
## Hylocomium.splendens Hypericum.perforatum
## 0.18421053 0.15789474
## Hypnum.cupressiforme Hypnum.imponens
## 0.19487179 0.02631579
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.07894737 0.02631579
## Kindbergia.praelonga Lathyrus.pratensis
## 0.15789474 0.07894737
## Leontodon.hispidus Leontodon.saxatilis
## 0.29730713 0.02631579
## Leucanthemum.vulgare Linum.catharticum
## 0.36842105 0.62621723
## Lolium.perenne Lophocolea.semiteres
## 0.10526316 0.02631579
## Lotus.corniculatus Luzula.multiflora
## 0.35614223 0.02631579
## Lysimachia.maritima Medicago.lupulina
## 0.05263158 0.13157895
## Myosotis.arvensis Ononis.repens
## 0.29457364 0.17133104
## Oxalis.acetosella Pastinaca.sativa
## 0.02631579 0.02631579
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.02631579 0.46913580
## Plantago.coronopus Plantago.lanceolata
## 0.19775404 0.51178451
## Pleurozium.schreberi Poa.annua
## 0.10526316 0.07894737
## Poa.spp. Polytrichum.commune
## 0.02631579 0.02631579
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.02631579 0.02631579
## Potentilla.reptans Prunella.vulgaris
## 0.10526316 0.23899371
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.12666667 0.07894737
## Ranunculus.acris Ranunculus.repens
## 0.02631579 0.07894737
## Reseda.lutea Rhinanthus.minor
## 0.02631579 0.02631579
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.02631579 0.47000618
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.05263158 0.05263158
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.05263158 0.05263158
## Sedum.anglicum Senecio.jacobaea
## 0.02631579 0.05263158
## Senecio.vulgaris Sonchus.arvensis
## 0.02631579 0.02631579
## Stachys.sylvatica Stellaria.apetala
## 0.05263158 0.02631579
## Taraxacum.agg. Thuidium.tamariscinum
## 0.35680751 0.07894737
## Thymus.polytrichus Trichostomum.crispulum
## 0.27842071 0.21468927
## Trifolium.campestre Trifolium.dubium
## 0.18421053 0.31520737
## Trifolium.pratense Trifolium.repens
## 0.32360097 0.13157895
## Trisetum.flavescens Tussilago.farfara
## 0.10526316 0.07894737
## Urtica.diocia Veronica.officinalis
## 0.15028249 0.02631579
## Vicia.sativa Viola.riviniana
## 0.02631579 0.02631579
## Weissia.controversa Zygodon.stirtonii
## 0.02631579 0.02631579
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.765 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 0.888
## Anthyllis.vulneraria Aphanes.arvensis
## 0.940 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.868 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.531
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 0.079
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.444 0.785
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.876 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.013 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 0.244
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 1.000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.221 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.016 0.205
## Festuca.rubra Festuca.rubra.agg.
## 1.000 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 0.937 1.000
## Galium.arvense Galium.saxatile
## 1.000 0.072
## Galium.verum Geum.urbanum
## 0.851 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.057 0.495
## Holcus.mollis Homalothecium.lutescens
## 0.825 0.075
## Hylocomium.splendens Hypericum.perforatum
## 0.904 0.834
## Hypnum.cupressiforme Hypnum.imponens
## 0.874 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.881 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 0.091 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.435 0.013
## Lolium.perenne Lophocolea.semiteres
## 0.872 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.658 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 0.751
## Myosotis.arvensis Ononis.repens
## 0.102 0.913
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.080
## Plantago.coronopus Plantago.lanceolata
## 0.197 0.102
## Pleurozium.schreberi Poa.annua
## 0.946 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 0.934 0.275
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1.000 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.093
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.158 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.109 0.339
## Trifolium.campestre Trifolium.dubium
## 0.793 0.055
## Trifolium.pratense Trifolium.repens
## 0.079 0.869
## Trisetum.flavescens Tussilago.farfara
## 0.805 1.000
## Urtica.diocia Veronica.officinalis
## 0.211 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Holcus spp. in AkermaniteIndvalsummary has the highest indval value, of 0.676, and a low p #value of 0.041. Therefore, Holcus spp. is the indicator species for akermanite.
clustAluminium_oxide_hydroxide <-cut(PlantChemistry1$Aluminium_oxide_hydroxide, 5,
labels=FALSE)
Aluminium_oxide_hydroxideIndval <- indval(as.matrix(PlantSpecies1),
clustAluminium_oxide_hydroxide, type= "long")
gr <- Aluminium_oxide_hydroxideIndval$maxcls[Aluminium_oxide_hydroxideIndval$pval<=0.05]
iv <- Aluminium_oxide_hydroxideIndval$indcls[Aluminium_oxide_hydroxideIndval$pval<=0.05]
pv <- Aluminium_oxide_hydroxideIndval$pval[Aluminium_oxide_hydroxideIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[Aluminium_oxide_hydroxideIndval$pval<=0.05]
Aluminium_oxide_hydroxideIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
Aluminium_oxide_hydroxideIndvalsummary <-
Aluminium_oxide_hydroxideIndvalsummary[order(Aluminium_oxide_hydroxideIndvalsummary$group,
-Aluminium_oxide_hydroxideIndvalsummary$indval),]
print(Aluminium_oxide_hydroxideIndvalsummary)
## group indval pvalue freq
## Hypochaeris.radicata 2 1.0000000 0.028 6
## Trifolium.repens 2 0.9405256 0.041 4
## Briza.media 2 0.7114625 0.045 1
summary(indval(as.matrix(PlantSpecies1), clustAluminium_oxide_hydroxide))
## cluster indicator_value probability
## Hypochaeris.radicata 2 1.0000 0.024
## Cerastium.fontanum 2 0.8791 0.047
##
## Sum of probabilities = 131.732
##
## Sum of Indicator Values = 19.47
##
## Sum of Significant Indicator Values = 1.88
##
## Number of Significant Indicators = 2
##
## Significant Indicator Distribution
##
## 2
## 2
print(indval(as.matrix(PlantSpecies1), clustAluminium_oxide_hydroxide))
## $relfrq
## 1 5
## Agrostis.spp. 0.200 0
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.025 0
## Alopercus.pratensis 0.025 0
## Angelica.sylvestris 0.050 0
## Anthoxanthum.odoratum 0.150 0
## Anthyllis.vulneraria 0.125 0
## Aphanes.arvensis 0.075 0
## Arrhenatherum.elatius 0.200 0
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.025 0
## Bellis.perennis 0.300 0
## Betula.pubescens 0.025 0
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.100 0
## Brachythecium.rutabulum 0.150 0
## Briza.media 0.050 1
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.025 0
## Bryum.c.f..pallescens 0.075 0
## Bryum.capillare 0.025 0
## Bryum.spp. 0.075 0
## Calliergonella.cupsidata 0.350 1
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.025 0
## Carex.distans 0.050 0
## Carex.flacca 0.175 0
## Carex.panicea 0.025 0
## Carlina.vulgaris 0.250 0
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.100 0
## Centaurium.pulchellum 0.025 0
## Cerastium.fontanum 0.150 1
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.025 0
## Cirsium.arvense 0.075 0
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.050 0
## Cynosurus.cristatus 0.075 0
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.050 0
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.125 0
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.075 0
## Equisteum.variegatum 0.025 0
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.275 0
## Festuca.ovina 0.175 0
## Festuca.rubra 0.350 1
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.075 0
## Fissidens.adianthoides 0.025 0
## Fissidens.dubius 0.050 0
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.150 0
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.100 0
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.025 0
## Holcus.spp. 0.500 1
## Holcus.lanatus 0.275 1
## Holcus.mollis 0.150 0
## Homalothecium.lutescens 0.050 0
## Hylocomium.splendens 0.175 0
## Hypericum.perforatum 0.150 0
## Hypnum.cupressiforme 0.250 0
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.000 1
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.075 0
## Leontodon.hispidus 0.125 0
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.325 1
## Linum.catharticum 0.125 0
## Lolium.perenne 0.100 0
## Lophocolea.semiteres 0.025 0
## Lotus.corniculatus 0.425 1
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.050 0
## Medicago.lupulina 0.125 0
## Myosotis.arvensis 0.125 0
## Ononis.repens 0.200 0
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.300 0
## Plantago.coronopus 0.100 0
## Plantago.lanceolata 0.325 0
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.075 0
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.100 0
## Prunella.vulgaris 0.125 0
## Pseudoscleropidum.purum 0.200 0
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.050 1
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.325 0
## Rhytidadelphus.triquetris 0.050 0
## Rubus.fruticosus 0.050 0
## Sanguisorba.minor.spp.minor 0.050 0
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.050 0
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.050 0
## Stellaria.apetala 0.025 0
## Taraxacum.agg. 0.275 0
## Thuidium.tamariscinum 0.075 0
## Thymus.polytrichus 0.200 0
## Trichostomum.crispulum 0.150 0
## Trifolium.campestre 0.150 1
## Trifolium.dubium 0.050 0
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.100 1
## Trisetum.flavescens 0.100 0
## Tussilago.farfara 0.075 0
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.025 0
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.025 0
## Zygodon.stirtonii 0.025 0
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.0000000
## Agrostis.canina 1.00000000 0.0000000
## Alchemilla.mollis 1.00000000 0.0000000
## Alopercus.pratensis 1.00000000 0.0000000
## Angelica.sylvestris 1.00000000 0.0000000
## Anthoxanthum.odoratum 1.00000000 0.0000000
## Anthyllis.vulneraria 1.00000000 0.0000000
## Aphanes.arvensis 1.00000000 0.0000000
## Arrhenatherum.elatius 1.00000000 0.0000000
## Atrichum.undulatum 1.00000000 0.0000000
## Avenula.pratensis 1.00000000 0.0000000
## Bellis.perennis 1.00000000 0.0000000
## Betula.pubescens 1.00000000 0.0000000
## Blackstonia.perfoliata 1.00000000 0.0000000
## Brachythecium.albicans 1.00000000 0.0000000
## Brachythecium.glareosum 1.00000000 0.0000000
## Brachythecium.mildeanum 1.00000000 0.0000000
## Brachythecium.rutabulum 1.00000000 0.0000000
## Briza.media 0.28853755 0.7114625
## Bromus.hordeaceus 1.00000000 0.0000000
## Bryum.c.f..caespiticium 1.00000000 0.0000000
## Bryum.c.f..pallescens 1.00000000 0.0000000
## Bryum.capillare 1.00000000 0.0000000
## Bryum.spp. 1.00000000 0.0000000
## Calliergonella.cupsidata 0.15221580 0.8477842
## Calypogeia.arguta 1.00000000 0.0000000
## Campanula.rotundifolia 1.00000000 0.0000000
## Carex.distans 1.00000000 0.0000000
## Carex.flacca 1.00000000 0.0000000
## Carex.panicea 1.00000000 0.0000000
## Carlina.vulgaris 1.00000000 0.0000000
## Centaurea.nigra 1.00000000 0.0000000
## Centaurium.erythraea 1.00000000 0.0000000
## Centaurium.littorale 1.00000000 0.0000000
## Centaurium.pulchellum 1.00000000 0.0000000
## Cerastium.fontanum 0.12087912 0.8791209
## Chamaenerion.angustifolium 1.00000000 0.0000000
## Cirriphyllum.piliferum 1.00000000 0.0000000
## Cirsium.arvense 1.00000000 0.0000000
## Cirsium.palustre 1.00000000 0.0000000
## Crepis.capillaris 1.00000000 0.0000000
## Cynosurus.cristatus 1.00000000 0.0000000
## Dactylis.glomerata 1.00000000 0.0000000
## Dactylorhiza.fuchsii 1.00000000 0.0000000
## Danthonia.decumbens 1.00000000 0.0000000
## Daucus.carrota 1.00000000 0.0000000
## Dicranella.spp. 1.00000000 0.0000000
## Dicranum.scoparium 1.00000000 0.0000000
## Epilobium.montanum 1.00000000 0.0000000
## Equisetum.arvense 1.00000000 0.0000000
## Equisteum.variegatum 1.00000000 0.0000000
## Erigeron.acer 1.00000000 0.0000000
## Euphrasia.agg 1.00000000 0.0000000
## Festuca.ovina 1.00000000 0.0000000
## Festuca.rubra 0.17764892 0.8223511
## Festuca.rubra.agg. 1.00000000 0.0000000
## Filipendula.ulmaria 1.00000000 0.0000000
## Fissidens.adianthoides 1.00000000 0.0000000
## Fissidens.dubius 1.00000000 0.0000000
## Fissidens.exilis 1.00000000 0.0000000
## Fragaria.vesca 1.00000000 0.0000000
## Galium.aparine 1.00000000 0.0000000
## Galium.arvense 1.00000000 0.0000000
## Galium.saxatile 1.00000000 0.0000000
## Galium.verum 1.00000000 0.0000000
## Geum.urbanum 1.00000000 0.0000000
## Glechoma.hederacea 1.00000000 0.0000000
## Helicotrichon.spp. 1.00000000 0.0000000
## Heracleum.sphondylium 1.00000000 0.0000000
## Hieracium.spp. 1.00000000 0.0000000
## Holcus.spp. 0.28876245 0.7112376
## Holcus.lanatus 0.17763158 0.8223684
## Holcus.mollis 1.00000000 0.0000000
## Homalothecium.lutescens 1.00000000 0.0000000
## Hylocomium.splendens 1.00000000 0.0000000
## Hypericum.perforatum 1.00000000 0.0000000
## Hypnum.cupressiforme 1.00000000 0.0000000
## Hypnum.imponens 1.00000000 0.0000000
## Hypnum.jutlandicum 1.00000000 0.0000000
## Hypochaeris.radicata 0.00000000 1.0000000
## Kindbergia.praelonga 1.00000000 0.0000000
## Lathyrus.pratensis 1.00000000 0.0000000
## Leontodon.hispidus 1.00000000 0.0000000
## Leontodon.saxatilis 1.00000000 0.0000000
## Leucanthemum.vulgare 0.70802920 0.2919708
## Linum.catharticum 1.00000000 0.0000000
## Lolium.perenne 1.00000000 0.0000000
## Lophocolea.semiteres 1.00000000 0.0000000
## Lotus.corniculatus 0.44093778 0.5590622
## Luzula.multiflora 1.00000000 0.0000000
## Lysimachia.maritima 1.00000000 0.0000000
## Medicago.lupulina 1.00000000 0.0000000
## Myosotis.arvensis 1.00000000 0.0000000
## Ononis.repens 1.00000000 0.0000000
## Oxalis.acetosella 1.00000000 0.0000000
## Pastinaca.sativa 1.00000000 0.0000000
## Pentaglottis.sempervirens 1.00000000 0.0000000
## Pillosella.officinarum 1.00000000 0.0000000
## Plantago.coronopus 1.00000000 0.0000000
## Plantago.lanceolata 1.00000000 0.0000000
## Pleurozium.schreberi 1.00000000 0.0000000
## Poa.annua 1.00000000 0.0000000
## Poa.spp. 1.00000000 0.0000000
## Polytrichum.commune 1.00000000 0.0000000
## Polytrichum.commune.agg. 1.00000000 0.0000000
## Polytrichum.formosum 1.00000000 0.0000000
## Potentilla.reptans 1.00000000 0.0000000
## Prunella.vulgaris 1.00000000 0.0000000
## Pseudoscleropidum.purum 1.00000000 0.0000000
## Pteridium.aquilinum 1.00000000 0.0000000
## Ranunculus.acris 1.00000000 0.0000000
## Ranunculus.repens 0.41176471 0.5882353
## Reseda.lutea 1.00000000 0.0000000
## Rhinanthus.minor 1.00000000 0.0000000
## Rhizomnium.punctatum 1.00000000 0.0000000
## Rhytidadelphus.squarrosus 1.00000000 0.0000000
## Rhytidadelphus.triquetris 1.00000000 0.0000000
## Rubus.fruticosus 1.00000000 0.0000000
## Sanguisorba.minor.spp.minor 1.00000000 0.0000000
## Saniona.uncinata 1.00000000 0.0000000
## Sedum.anglicum 1.00000000 0.0000000
## Senecio.jacobaea 1.00000000 0.0000000
## Senecio.vulgaris 1.00000000 0.0000000
## Sonchus.arvensis 1.00000000 0.0000000
## Stachys.sylvatica 1.00000000 0.0000000
## Stellaria.apetala 1.00000000 0.0000000
## Taraxacum.agg. 1.00000000 0.0000000
## Thuidium.tamariscinum 1.00000000 0.0000000
## Thymus.polytrichus 1.00000000 0.0000000
## Trichostomum.crispulum 1.00000000 0.0000000
## Trifolium.campestre 0.25407925 0.7459207
## Trifolium.dubium 1.00000000 0.0000000
## Trifolium.pratense 1.00000000 0.0000000
## Trifolium.repens 0.05947441 0.9405256
## Trisetum.flavescens 1.00000000 0.0000000
## Tussilago.farfara 1.00000000 0.0000000
## Urtica.diocia 1.00000000 0.0000000
## Veronica.officinalis 1.00000000 0.0000000
## Vicia.sativa 1.00000000 0.0000000
## Viola.riviniana 1.00000000 0.0000000
## Weissia.controversa 1.00000000 0.0000000
## Zygodon.stirtonii 1.00000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.200000000 0.0000000
## Agrostis.canina 0.025000000 0.0000000
## Alchemilla.mollis 0.025000000 0.0000000
## Alopercus.pratensis 0.025000000 0.0000000
## Angelica.sylvestris 0.050000000 0.0000000
## Anthoxanthum.odoratum 0.150000000 0.0000000
## Anthyllis.vulneraria 0.125000000 0.0000000
## Aphanes.arvensis 0.075000000 0.0000000
## Arrhenatherum.elatius 0.200000000 0.0000000
## Atrichum.undulatum 0.050000000 0.0000000
## Avenula.pratensis 0.025000000 0.0000000
## Bellis.perennis 0.300000000 0.0000000
## Betula.pubescens 0.025000000 0.0000000
## Blackstonia.perfoliata 0.025000000 0.0000000
## Brachythecium.albicans 0.025000000 0.0000000
## Brachythecium.glareosum 0.025000000 0.0000000
## Brachythecium.mildeanum 0.100000000 0.0000000
## Brachythecium.rutabulum 0.150000000 0.0000000
## Briza.media 0.014426877 0.7114625
## Bromus.hordeaceus 0.025000000 0.0000000
## Bryum.c.f..caespiticium 0.025000000 0.0000000
## Bryum.c.f..pallescens 0.075000000 0.0000000
## Bryum.capillare 0.025000000 0.0000000
## Bryum.spp. 0.075000000 0.0000000
## Calliergonella.cupsidata 0.053275530 0.8477842
## Calypogeia.arguta 0.200000000 0.0000000
## Campanula.rotundifolia 0.025000000 0.0000000
## Carex.distans 0.050000000 0.0000000
## Carex.flacca 0.175000000 0.0000000
## Carex.panicea 0.025000000 0.0000000
## Carlina.vulgaris 0.250000000 0.0000000
## Centaurea.nigra 0.050000000 0.0000000
## Centaurium.erythraea 0.050000000 0.0000000
## Centaurium.littorale 0.100000000 0.0000000
## Centaurium.pulchellum 0.025000000 0.0000000
## Cerastium.fontanum 0.018131868 0.8791209
## Chamaenerion.angustifolium 0.025000000 0.0000000
## Cirriphyllum.piliferum 0.025000000 0.0000000
## Cirsium.arvense 0.075000000 0.0000000
## Cirsium.palustre 0.050000000 0.0000000
## Crepis.capillaris 0.050000000 0.0000000
## Cynosurus.cristatus 0.075000000 0.0000000
## Dactylis.glomerata 0.150000000 0.0000000
## Dactylorhiza.fuchsii 0.050000000 0.0000000
## Danthonia.decumbens 0.025000000 0.0000000
## Daucus.carrota 0.050000000 0.0000000
## Dicranella.spp. 0.025000000 0.0000000
## Dicranum.scoparium 0.125000000 0.0000000
## Epilobium.montanum 0.075000000 0.0000000
## Equisetum.arvense 0.075000000 0.0000000
## Equisteum.variegatum 0.025000000 0.0000000
## Erigeron.acer 0.050000000 0.0000000
## Euphrasia.agg 0.275000000 0.0000000
## Festuca.ovina 0.175000000 0.0000000
## Festuca.rubra 0.062177122 0.8223511
## Festuca.rubra.agg. 0.025000000 0.0000000
## Filipendula.ulmaria 0.075000000 0.0000000
## Fissidens.adianthoides 0.025000000 0.0000000
## Fissidens.dubius 0.050000000 0.0000000
## Fissidens.exilis 0.025000000 0.0000000
## Fragaria.vesca 0.150000000 0.0000000
## Galium.aparine 0.025000000 0.0000000
## Galium.arvense 0.025000000 0.0000000
## Galium.saxatile 0.025000000 0.0000000
## Galium.verum 0.100000000 0.0000000
## Geum.urbanum 0.025000000 0.0000000
## Glechoma.hederacea 0.025000000 0.0000000
## Helicotrichon.spp. 0.025000000 0.0000000
## Heracleum.sphondylium 0.075000000 0.0000000
## Hieracium.spp. 0.025000000 0.0000000
## Holcus.spp. 0.144381223 0.7112376
## Holcus.lanatus 0.048848684 0.8223684
## Holcus.mollis 0.150000000 0.0000000
## Homalothecium.lutescens 0.050000000 0.0000000
## Hylocomium.splendens 0.175000000 0.0000000
## Hypericum.perforatum 0.150000000 0.0000000
## Hypnum.cupressiforme 0.250000000 0.0000000
## Hypnum.imponens 0.025000000 0.0000000
## Hypnum.jutlandicum 0.075000000 0.0000000
## Hypochaeris.radicata 0.000000000 1.0000000
## Kindbergia.praelonga 0.150000000 0.0000000
## Lathyrus.pratensis 0.075000000 0.0000000
## Leontodon.hispidus 0.125000000 0.0000000
## Leontodon.saxatilis 0.025000000 0.0000000
## Leucanthemum.vulgare 0.230109489 0.2919708
## Linum.catharticum 0.125000000 0.0000000
## Lolium.perenne 0.100000000 0.0000000
## Lophocolea.semiteres 0.025000000 0.0000000
## Lotus.corniculatus 0.187398557 0.5590622
## Luzula.multiflora 0.025000000 0.0000000
## Lysimachia.maritima 0.050000000 0.0000000
## Medicago.lupulina 0.125000000 0.0000000
## Myosotis.arvensis 0.125000000 0.0000000
## Ononis.repens 0.200000000 0.0000000
## Oxalis.acetosella 0.025000000 0.0000000
## Pastinaca.sativa 0.025000000 0.0000000
## Pentaglottis.sempervirens 0.025000000 0.0000000
## Pillosella.officinarum 0.300000000 0.0000000
## Plantago.coronopus 0.100000000 0.0000000
## Plantago.lanceolata 0.325000000 0.0000000
## Pleurozium.schreberi 0.100000000 0.0000000
## Poa.annua 0.075000000 0.0000000
## Poa.spp. 0.025000000 0.0000000
## Polytrichum.commune 0.025000000 0.0000000
## Polytrichum.commune.agg. 0.025000000 0.0000000
## Polytrichum.formosum 0.025000000 0.0000000
## Potentilla.reptans 0.100000000 0.0000000
## Prunella.vulgaris 0.125000000 0.0000000
## Pseudoscleropidum.purum 0.200000000 0.0000000
## Pteridium.aquilinum 0.075000000 0.0000000
## Ranunculus.acris 0.025000000 0.0000000
## Ranunculus.repens 0.020588235 0.5882353
## Reseda.lutea 0.025000000 0.0000000
## Rhinanthus.minor 0.025000000 0.0000000
## Rhizomnium.punctatum 0.025000000 0.0000000
## Rhytidadelphus.squarrosus 0.325000000 0.0000000
## Rhytidadelphus.triquetris 0.050000000 0.0000000
## Rubus.fruticosus 0.050000000 0.0000000
## Sanguisorba.minor.spp.minor 0.050000000 0.0000000
## Saniona.uncinata 0.050000000 0.0000000
## Sedum.anglicum 0.025000000 0.0000000
## Senecio.jacobaea 0.050000000 0.0000000
## Senecio.vulgaris 0.025000000 0.0000000
## Sonchus.arvensis 0.025000000 0.0000000
## Stachys.sylvatica 0.050000000 0.0000000
## Stellaria.apetala 0.025000000 0.0000000
## Taraxacum.agg. 0.275000000 0.0000000
## Thuidium.tamariscinum 0.075000000 0.0000000
## Thymus.polytrichus 0.200000000 0.0000000
## Trichostomum.crispulum 0.150000000 0.0000000
## Trifolium.campestre 0.038111888 0.7459207
## Trifolium.dubium 0.050000000 0.0000000
## Trifolium.pratense 0.100000000 0.0000000
## Trifolium.repens 0.005947441 0.9405256
## Trisetum.flavescens 0.100000000 0.0000000
## Tussilago.farfara 0.075000000 0.0000000
## Urtica.diocia 0.100000000 0.0000000
## Veronica.officinalis 0.025000000 0.0000000
## Vicia.sativa 0.025000000 0.0000000
## Viola.riviniana 0.025000000 0.0000000
## Weissia.controversa 0.025000000 0.0000000
## Zygodon.stirtonii 0.025000000 0.0000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 2 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 2 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 1
## Festuca.rubra Festuca.rubra.agg.
## 2 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 2 2
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 2
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 2 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 2 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 2
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 2 1
## Trifolium.pratense Trifolium.repens
## 1 2
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.2000000 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 0.0250000 0.0250000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.0500000 0.1500000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.1250000 0.0750000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.2000000 0.0500000
## Avenula.pratensis Bellis.perennis
## 0.0250000 0.3000000
## Betula.pubescens Blackstonia.perfoliata
## 0.0250000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.1000000 0.1500000
## Briza.media Bromus.hordeaceus
## 0.7114625 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.0250000 0.0750000
## Bryum.capillare Bryum.spp.
## 0.0250000 0.0750000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.8477842 0.2000000
## Campanula.rotundifolia Carex.distans
## 0.0250000 0.0500000
## Carex.flacca Carex.panicea
## 0.1750000 0.0250000
## Carlina.vulgaris Centaurea.nigra
## 0.2500000 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.1000000
## Centaurium.pulchellum Cerastium.fontanum
## 0.0250000 0.8791209
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 0.0250000
## Cirsium.arvense Cirsium.palustre
## 0.0750000 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.0500000 0.0750000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.0500000
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.1250000
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.0750000
## Equisteum.variegatum Erigeron.acer
## 0.0250000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.2750000 0.1750000
## Festuca.rubra Festuca.rubra.agg.
## 0.8223511 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.0750000 0.0250000
## Fissidens.dubius Fissidens.exilis
## 0.0500000 0.0250000
## Fragaria.vesca Galium.aparine
## 0.1500000 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.1000000 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 0.0250000
## Holcus.spp. Holcus.lanatus
## 0.7112376 0.8223684
## Holcus.mollis Homalothecium.lutescens
## 0.1500000 0.0500000
## Hylocomium.splendens Hypericum.perforatum
## 0.1750000 0.1500000
## Hypnum.cupressiforme Hypnum.imponens
## 0.2500000 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 1.0000000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.0750000
## Leontodon.hispidus Leontodon.saxatilis
## 0.1250000 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.2919708 0.1250000
## Lolium.perenne Lophocolea.semiteres
## 0.1000000 0.0250000
## Lotus.corniculatus Luzula.multiflora
## 0.5590622 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.0500000 0.1250000
## Myosotis.arvensis Ononis.repens
## 0.1250000 0.2000000
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.3000000
## Plantago.coronopus Plantago.lanceolata
## 0.1000000 0.3250000
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.0750000
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.1000000 0.1250000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.2000000 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.5882353
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.3250000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.0500000 0.0500000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.0500000 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.0500000
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.0500000 0.0250000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.2750000 0.0750000
## Thymus.polytrichus Trichostomum.crispulum
## 0.2000000 0.1500000
## Trifolium.campestre Trifolium.dubium
## 0.7459207 0.0500000
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.9405256
## Trisetum.flavescens Tussilago.farfara
## 0.1000000 0.0750000
## Urtica.diocia Veronica.officinalis
## 0.1000000 0.0250000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 0.0250000 0.0250000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1.000 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 1.000 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 1.000 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 1.000
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 0.043 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.135 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.974 1.000
## Carlina.vulgaris Centaurea.nigra
## 1.000 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.047
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.954 1.000
## Festuca.rubra Festuca.rubra.agg.
## 0.151 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 1.000 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.173 0.114
## Holcus.mollis Homalothecium.lutescens
## 0.975 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.977 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 1.000 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 0.023
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 1.000 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.211 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.902
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.872
## Plantago.coronopus Plantago.lanceolata
## 1.000 0.939
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1.000 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 0.072
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 1.000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 1.000 1.000
## Trifolium.campestre Trifolium.dubium
## 0.128 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 0.052
## Trisetum.flavescens Tussilago.farfara
## 1.000 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Hypochaeris radicata is reported as the indicator species for aluminium oxide hydroxide, #with a high indval number of 1 and a low p value of 0.028.
clustAnhydrite <-cut(PlantChemistry1$Anhydrite, 5, labels=FALSE)
AnhydriteIndval <- indval(as.matrix(PlantSpecies1), clustAnhydrite, type= "long")
gr <- AnhydriteIndval$maxcls[AnhydriteIndval$pval<=0.05]
iv <- AnhydriteIndval$indcls[AnhydriteIndval$pval<=0.05]
pv <- AnhydriteIndval$pval[AnhydriteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[AnhydriteIndval$pval<=0.05]
AnhydriteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
AnhydriteIndvalsummary <- AnhydriteIndvalsummary[order(AnhydriteIndvalsummary$group,
-AnhydriteIndvalsummary$indval),]
print(AnhydriteIndvalsummary)
## group indval pvalue freq
## Alchemilla.mollis 2 1.0000000 0.036 1
## Equisetum.arvense 2 0.9929078 0.024 1
## Tussilago.farfara 2 0.9884679 0.026 4
## Angelica.sylvestris 2 0.9756098 0.041 6
## Stachys.sylvatica 2 0.9756098 0.043 1
summary(indval(as.matrix(PlantSpecies1), clustAnhydrite))
## cluster indicator_value probability
## Alchemilla.mollis 2 1.0000 0.031
## Equisetum.arvense 2 0.9929 0.029
## Tussilago.farfara 2 0.9885 0.032
## Angelica.sylvestris 2 0.9756 0.034
## Senecio.jacobaea 2 0.9756 0.049
## Stachys.sylvatica 2 0.9756 0.049
## Cirsium.arvense 2 0.9357 0.050
##
## Sum of probabilities = 127.979
##
## Sum of Indicator Values = 23.75
##
## Sum of Significant Indicator Values = 6.84
##
## Number of Significant Indicators = 7
##
## Significant Indicator Distribution
##
## 2
## 7
print(indval(as.matrix(PlantSpecies1), clustAnhydrite))
## $relfrq
## 1 5
## Agrostis.spp. 0.175 1
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.000 1
## Alopercus.pratensis 0.025 0
## Angelica.sylvestris 0.025 1
## Anthoxanthum.odoratum 0.150 0
## Anthyllis.vulneraria 0.125 0
## Aphanes.arvensis 0.075 0
## Arrhenatherum.elatius 0.175 1
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.025 0
## Bellis.perennis 0.300 0
## Betula.pubescens 0.025 0
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.100 0
## Brachythecium.rutabulum 0.125 1
## Briza.media 0.075 0
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.025 0
## Bryum.c.f..pallescens 0.075 0
## Bryum.capillare 0.025 0
## Bryum.spp. 0.075 0
## Calliergonella.cupsidata 0.350 1
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.025 0
## Carex.distans 0.050 0
## Carex.flacca 0.175 0
## Carex.panicea 0.025 0
## Carlina.vulgaris 0.250 0
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.100 0
## Centaurium.pulchellum 0.025 0
## Cerastium.fontanum 0.175 0
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.025 0
## Cirsium.arvense 0.050 1
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.050 0
## Cynosurus.cristatus 0.075 0
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.050 0
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.125 0
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.050 1
## Equisteum.variegatum 0.025 0
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.275 0
## Festuca.ovina 0.175 0
## Festuca.rubra 0.375 0
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.050 1
## Fissidens.adianthoides 0.025 0
## Fissidens.dubius 0.050 0
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.150 0
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.100 0
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.025 0
## Holcus.spp. 0.525 0
## Holcus.lanatus 0.300 0
## Holcus.mollis 0.125 1
## Homalothecium.lutescens 0.050 0
## Hylocomium.splendens 0.175 0
## Hypericum.perforatum 0.150 0
## Hypnum.cupressiforme 0.250 0
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.025 0
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.075 0
## Leontodon.hispidus 0.125 0
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.350 0
## Linum.catharticum 0.125 0
## Lolium.perenne 0.100 0
## Lophocolea.semiteres 0.025 0
## Lotus.corniculatus 0.450 0
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.050 0
## Medicago.lupulina 0.125 0
## Myosotis.arvensis 0.125 0
## Ononis.repens 0.200 0
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.300 0
## Plantago.coronopus 0.100 0
## Plantago.lanceolata 0.325 0
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.075 0
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.100 0
## Prunella.vulgaris 0.125 0
## Pseudoscleropidum.purum 0.200 0
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.075 0
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.300 1
## Rhytidadelphus.triquetris 0.050 0
## Rubus.fruticosus 0.050 0
## Sanguisorba.minor.spp.minor 0.050 0
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.025 1
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.025 1
## Stellaria.apetala 0.025 0
## Taraxacum.agg. 0.275 0
## Thuidium.tamariscinum 0.075 0
## Thymus.polytrichus 0.200 0
## Trichostomum.crispulum 0.150 0
## Trifolium.campestre 0.175 0
## Trifolium.dubium 0.050 0
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.125 0
## Trisetum.flavescens 0.100 0
## Tussilago.farfara 0.050 1
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.025 0
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.025 0
## Zygodon.stirtonii 0.025 0
##
## $relabu
## 1 5
## Agrostis.spp. 0.457013575 0.5429864
## Agrostis.canina 1.000000000 0.0000000
## Alchemilla.mollis 0.000000000 1.0000000
## Alopercus.pratensis 1.000000000 0.0000000
## Angelica.sylvestris 0.024390244 0.9756098
## Anthoxanthum.odoratum 1.000000000 0.0000000
## Anthyllis.vulneraria 1.000000000 0.0000000
## Aphanes.arvensis 1.000000000 0.0000000
## Arrhenatherum.elatius 0.279279279 0.7207207
## Atrichum.undulatum 1.000000000 0.0000000
## Avenula.pratensis 1.000000000 0.0000000
## Bellis.perennis 1.000000000 0.0000000
## Betula.pubescens 1.000000000 0.0000000
## Blackstonia.perfoliata 1.000000000 0.0000000
## Brachythecium.albicans 1.000000000 0.0000000
## Brachythecium.glareosum 1.000000000 0.0000000
## Brachythecium.mildeanum 1.000000000 0.0000000
## Brachythecium.rutabulum 0.148936170 0.8510638
## Briza.media 1.000000000 0.0000000
## Bromus.hordeaceus 1.000000000 0.0000000
## Bryum.c.f..caespiticium 1.000000000 0.0000000
## Bryum.c.f..pallescens 1.000000000 0.0000000
## Bryum.capillare 1.000000000 0.0000000
## Bryum.spp. 1.000000000 0.0000000
## Calliergonella.cupsidata 0.298245614 0.7017544
## Calypogeia.arguta 1.000000000 0.0000000
## Campanula.rotundifolia 1.000000000 0.0000000
## Carex.distans 1.000000000 0.0000000
## Carex.flacca 1.000000000 0.0000000
## Carex.panicea 1.000000000 0.0000000
## Carlina.vulgaris 1.000000000 0.0000000
## Centaurea.nigra 1.000000000 0.0000000
## Centaurium.erythraea 1.000000000 0.0000000
## Centaurium.littorale 1.000000000 0.0000000
## Centaurium.pulchellum 1.000000000 0.0000000
## Cerastium.fontanum 1.000000000 0.0000000
## Chamaenerion.angustifolium 1.000000000 0.0000000
## Cirriphyllum.piliferum 1.000000000 0.0000000
## Cirsium.arvense 0.064327485 0.9356725
## Cirsium.palustre 1.000000000 0.0000000
## Crepis.capillaris 1.000000000 0.0000000
## Cynosurus.cristatus 1.000000000 0.0000000
## Dactylis.glomerata 1.000000000 0.0000000
## Dactylorhiza.fuchsii 1.000000000 0.0000000
## Danthonia.decumbens 1.000000000 0.0000000
## Daucus.carrota 1.000000000 0.0000000
## Dicranella.spp. 1.000000000 0.0000000
## Dicranum.scoparium 1.000000000 0.0000000
## Epilobium.montanum 1.000000000 0.0000000
## Equisetum.arvense 0.007092199 0.9929078
## Equisteum.variegatum 1.000000000 0.0000000
## Erigeron.acer 1.000000000 0.0000000
## Euphrasia.agg 1.000000000 0.0000000
## Festuca.ovina 1.000000000 0.0000000
## Festuca.rubra 1.000000000 0.0000000
## Festuca.rubra.agg. 1.000000000 0.0000000
## Filipendula.ulmaria 0.200000000 0.8000000
## Fissidens.adianthoides 1.000000000 0.0000000
## Fissidens.dubius 1.000000000 0.0000000
## Fissidens.exilis 1.000000000 0.0000000
## Fragaria.vesca 1.000000000 0.0000000
## Galium.aparine 1.000000000 0.0000000
## Galium.arvense 1.000000000 0.0000000
## Galium.saxatile 1.000000000 0.0000000
## Galium.verum 1.000000000 0.0000000
## Geum.urbanum 1.000000000 0.0000000
## Glechoma.hederacea 1.000000000 0.0000000
## Helicotrichon.spp. 1.000000000 0.0000000
## Heracleum.sphondylium 1.000000000 0.0000000
## Hieracium.spp. 1.000000000 0.0000000
## Holcus.spp. 1.000000000 0.0000000
## Holcus.lanatus 1.000000000 0.0000000
## Holcus.mollis 0.239373602 0.7606264
## Homalothecium.lutescens 1.000000000 0.0000000
## Hylocomium.splendens 1.000000000 0.0000000
## Hypericum.perforatum 1.000000000 0.0000000
## Hypnum.cupressiforme 1.000000000 0.0000000
## Hypnum.imponens 1.000000000 0.0000000
## Hypnum.jutlandicum 1.000000000 0.0000000
## Hypochaeris.radicata 1.000000000 0.0000000
## Kindbergia.praelonga 1.000000000 0.0000000
## Lathyrus.pratensis 1.000000000 0.0000000
## Leontodon.hispidus 1.000000000 0.0000000
## Leontodon.saxatilis 1.000000000 0.0000000
## Leucanthemum.vulgare 1.000000000 0.0000000
## Linum.catharticum 1.000000000 0.0000000
## Lolium.perenne 1.000000000 0.0000000
## Lophocolea.semiteres 1.000000000 0.0000000
## Lotus.corniculatus 1.000000000 0.0000000
## Luzula.multiflora 1.000000000 0.0000000
## Lysimachia.maritima 1.000000000 0.0000000
## Medicago.lupulina 1.000000000 0.0000000
## Myosotis.arvensis 1.000000000 0.0000000
## Ononis.repens 1.000000000 0.0000000
## Oxalis.acetosella 1.000000000 0.0000000
## Pastinaca.sativa 1.000000000 0.0000000
## Pentaglottis.sempervirens 1.000000000 0.0000000
## Pillosella.officinarum 1.000000000 0.0000000
## Plantago.coronopus 1.000000000 0.0000000
## Plantago.lanceolata 1.000000000 0.0000000
## Pleurozium.schreberi 1.000000000 0.0000000
## Poa.annua 1.000000000 0.0000000
## Poa.spp. 1.000000000 0.0000000
## Polytrichum.commune 1.000000000 0.0000000
## Polytrichum.commune.agg. 1.000000000 0.0000000
## Polytrichum.formosum 1.000000000 0.0000000
## Potentilla.reptans 1.000000000 0.0000000
## Prunella.vulgaris 1.000000000 0.0000000
## Pseudoscleropidum.purum 1.000000000 0.0000000
## Pteridium.aquilinum 1.000000000 0.0000000
## Ranunculus.acris 1.000000000 0.0000000
## Ranunculus.repens 1.000000000 0.0000000
## Reseda.lutea 1.000000000 0.0000000
## Rhinanthus.minor 1.000000000 0.0000000
## Rhizomnium.punctatum 1.000000000 0.0000000
## Rhytidadelphus.squarrosus 0.166666667 0.8333333
## Rhytidadelphus.triquetris 1.000000000 0.0000000
## Rubus.fruticosus 1.000000000 0.0000000
## Sanguisorba.minor.spp.minor 1.000000000 0.0000000
## Saniona.uncinata 1.000000000 0.0000000
## Sedum.anglicum 1.000000000 0.0000000
## Senecio.jacobaea 0.024390244 0.9756098
## Senecio.vulgaris 1.000000000 0.0000000
## Sonchus.arvensis 1.000000000 0.0000000
## Stachys.sylvatica 0.024390244 0.9756098
## Stellaria.apetala 1.000000000 0.0000000
## Taraxacum.agg. 1.000000000 0.0000000
## Thuidium.tamariscinum 1.000000000 0.0000000
## Thymus.polytrichus 1.000000000 0.0000000
## Trichostomum.crispulum 1.000000000 0.0000000
## Trifolium.campestre 1.000000000 0.0000000
## Trifolium.dubium 1.000000000 0.0000000
## Trifolium.pratense 1.000000000 0.0000000
## Trifolium.repens 1.000000000 0.0000000
## Trisetum.flavescens 1.000000000 0.0000000
## Tussilago.farfara 0.011532125 0.9884679
## Urtica.diocia 1.000000000 0.0000000
## Veronica.officinalis 1.000000000 0.0000000
## Vicia.sativa 1.000000000 0.0000000
## Viola.riviniana 1.000000000 0.0000000
## Weissia.controversa 1.000000000 0.0000000
## Zygodon.stirtonii 1.000000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.0799773756 0.5429864
## Agrostis.canina 0.0250000000 0.0000000
## Alchemilla.mollis 0.0000000000 1.0000000
## Alopercus.pratensis 0.0250000000 0.0000000
## Angelica.sylvestris 0.0006097561 0.9756098
## Anthoxanthum.odoratum 0.1500000000 0.0000000
## Anthyllis.vulneraria 0.1250000000 0.0000000
## Aphanes.arvensis 0.0750000000 0.0000000
## Arrhenatherum.elatius 0.0488738739 0.7207207
## Atrichum.undulatum 0.0500000000 0.0000000
## Avenula.pratensis 0.0250000000 0.0000000
## Bellis.perennis 0.3000000000 0.0000000
## Betula.pubescens 0.0250000000 0.0000000
## Blackstonia.perfoliata 0.0250000000 0.0000000
## Brachythecium.albicans 0.0250000000 0.0000000
## Brachythecium.glareosum 0.0250000000 0.0000000
## Brachythecium.mildeanum 0.1000000000 0.0000000
## Brachythecium.rutabulum 0.0186170213 0.8510638
## Briza.media 0.0750000000 0.0000000
## Bromus.hordeaceus 0.0250000000 0.0000000
## Bryum.c.f..caespiticium 0.0250000000 0.0000000
## Bryum.c.f..pallescens 0.0750000000 0.0000000
## Bryum.capillare 0.0250000000 0.0000000
## Bryum.spp. 0.0750000000 0.0000000
## Calliergonella.cupsidata 0.1043859649 0.7017544
## Calypogeia.arguta 0.2000000000 0.0000000
## Campanula.rotundifolia 0.0250000000 0.0000000
## Carex.distans 0.0500000000 0.0000000
## Carex.flacca 0.1750000000 0.0000000
## Carex.panicea 0.0250000000 0.0000000
## Carlina.vulgaris 0.2500000000 0.0000000
## Centaurea.nigra 0.0500000000 0.0000000
## Centaurium.erythraea 0.0500000000 0.0000000
## Centaurium.littorale 0.1000000000 0.0000000
## Centaurium.pulchellum 0.0250000000 0.0000000
## Cerastium.fontanum 0.1750000000 0.0000000
## Chamaenerion.angustifolium 0.0250000000 0.0000000
## Cirriphyllum.piliferum 0.0250000000 0.0000000
## Cirsium.arvense 0.0032163743 0.9356725
## Cirsium.palustre 0.0500000000 0.0000000
## Crepis.capillaris 0.0500000000 0.0000000
## Cynosurus.cristatus 0.0750000000 0.0000000
## Dactylis.glomerata 0.1500000000 0.0000000
## Dactylorhiza.fuchsii 0.0500000000 0.0000000
## Danthonia.decumbens 0.0250000000 0.0000000
## Daucus.carrota 0.0500000000 0.0000000
## Dicranella.spp. 0.0250000000 0.0000000
## Dicranum.scoparium 0.1250000000 0.0000000
## Epilobium.montanum 0.0750000000 0.0000000
## Equisetum.arvense 0.0003546099 0.9929078
## Equisteum.variegatum 0.0250000000 0.0000000
## Erigeron.acer 0.0500000000 0.0000000
## Euphrasia.agg 0.2750000000 0.0000000
## Festuca.ovina 0.1750000000 0.0000000
## Festuca.rubra 0.3750000000 0.0000000
## Festuca.rubra.agg. 0.0250000000 0.0000000
## Filipendula.ulmaria 0.0100000000 0.8000000
## Fissidens.adianthoides 0.0250000000 0.0000000
## Fissidens.dubius 0.0500000000 0.0000000
## Fissidens.exilis 0.0250000000 0.0000000
## Fragaria.vesca 0.1500000000 0.0000000
## Galium.aparine 0.0250000000 0.0000000
## Galium.arvense 0.0250000000 0.0000000
## Galium.saxatile 0.0250000000 0.0000000
## Galium.verum 0.1000000000 0.0000000
## Geum.urbanum 0.0250000000 0.0000000
## Glechoma.hederacea 0.0250000000 0.0000000
## Helicotrichon.spp. 0.0250000000 0.0000000
## Heracleum.sphondylium 0.0750000000 0.0000000
## Hieracium.spp. 0.0250000000 0.0000000
## Holcus.spp. 0.5250000000 0.0000000
## Holcus.lanatus 0.3000000000 0.0000000
## Holcus.mollis 0.0299217002 0.7606264
## Homalothecium.lutescens 0.0500000000 0.0000000
## Hylocomium.splendens 0.1750000000 0.0000000
## Hypericum.perforatum 0.1500000000 0.0000000
## Hypnum.cupressiforme 0.2500000000 0.0000000
## Hypnum.imponens 0.0250000000 0.0000000
## Hypnum.jutlandicum 0.0750000000 0.0000000
## Hypochaeris.radicata 0.0250000000 0.0000000
## Kindbergia.praelonga 0.1500000000 0.0000000
## Lathyrus.pratensis 0.0750000000 0.0000000
## Leontodon.hispidus 0.1250000000 0.0000000
## Leontodon.saxatilis 0.0250000000 0.0000000
## Leucanthemum.vulgare 0.3500000000 0.0000000
## Linum.catharticum 0.1250000000 0.0000000
## Lolium.perenne 0.1000000000 0.0000000
## Lophocolea.semiteres 0.0250000000 0.0000000
## Lotus.corniculatus 0.4500000000 0.0000000
## Luzula.multiflora 0.0250000000 0.0000000
## Lysimachia.maritima 0.0500000000 0.0000000
## Medicago.lupulina 0.1250000000 0.0000000
## Myosotis.arvensis 0.1250000000 0.0000000
## Ononis.repens 0.2000000000 0.0000000
## Oxalis.acetosella 0.0250000000 0.0000000
## Pastinaca.sativa 0.0250000000 0.0000000
## Pentaglottis.sempervirens 0.0250000000 0.0000000
## Pillosella.officinarum 0.3000000000 0.0000000
## Plantago.coronopus 0.1000000000 0.0000000
## Plantago.lanceolata 0.3250000000 0.0000000
## Pleurozium.schreberi 0.1000000000 0.0000000
## Poa.annua 0.0750000000 0.0000000
## Poa.spp. 0.0250000000 0.0000000
## Polytrichum.commune 0.0250000000 0.0000000
## Polytrichum.commune.agg. 0.0250000000 0.0000000
## Polytrichum.formosum 0.0250000000 0.0000000
## Potentilla.reptans 0.1000000000 0.0000000
## Prunella.vulgaris 0.1250000000 0.0000000
## Pseudoscleropidum.purum 0.2000000000 0.0000000
## Pteridium.aquilinum 0.0750000000 0.0000000
## Ranunculus.acris 0.0250000000 0.0000000
## Ranunculus.repens 0.0750000000 0.0000000
## Reseda.lutea 0.0250000000 0.0000000
## Rhinanthus.minor 0.0250000000 0.0000000
## Rhizomnium.punctatum 0.0250000000 0.0000000
## Rhytidadelphus.squarrosus 0.0500000000 0.8333333
## Rhytidadelphus.triquetris 0.0500000000 0.0000000
## Rubus.fruticosus 0.0500000000 0.0000000
## Sanguisorba.minor.spp.minor 0.0500000000 0.0000000
## Saniona.uncinata 0.0500000000 0.0000000
## Sedum.anglicum 0.0250000000 0.0000000
## Senecio.jacobaea 0.0006097561 0.9756098
## Senecio.vulgaris 0.0250000000 0.0000000
## Sonchus.arvensis 0.0250000000 0.0000000
## Stachys.sylvatica 0.0006097561 0.9756098
## Stellaria.apetala 0.0250000000 0.0000000
## Taraxacum.agg. 0.2750000000 0.0000000
## Thuidium.tamariscinum 0.0750000000 0.0000000
## Thymus.polytrichus 0.2000000000 0.0000000
## Trichostomum.crispulum 0.1500000000 0.0000000
## Trifolium.campestre 0.1750000000 0.0000000
## Trifolium.dubium 0.0500000000 0.0000000
## Trifolium.pratense 0.1000000000 0.0000000
## Trifolium.repens 0.1250000000 0.0000000
## Trisetum.flavescens 0.1000000000 0.0000000
## Tussilago.farfara 0.0005766063 0.9884679
## Urtica.diocia 0.1000000000 0.0000000
## Veronica.officinalis 0.0250000000 0.0000000
## Vicia.sativa 0.0250000000 0.0000000
## Viola.riviniana 0.0250000000 0.0000000
## Weissia.controversa 0.0250000000 0.0000000
## Zygodon.stirtonii 0.0250000000 0.0000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 2 1
## Alchemilla.mollis Alopercus.pratensis
## 2 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 2 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 2 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 2
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 2 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 2 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 2
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 1
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 2 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 1
## Holcus.mollis Homalothecium.lutescens
## 2 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 2
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 2
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 2 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 1 1
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 1 2
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.5429864 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 1.0000000 0.0250000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.9756098 0.1500000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.1250000 0.0750000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.7207207 0.0500000
## Avenula.pratensis Bellis.perennis
## 0.0250000 0.3000000
## Betula.pubescens Blackstonia.perfoliata
## 0.0250000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.1000000 0.8510638
## Briza.media Bromus.hordeaceus
## 0.0750000 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.0250000 0.0750000
## Bryum.capillare Bryum.spp.
## 0.0250000 0.0750000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.7017544 0.2000000
## Campanula.rotundifolia Carex.distans
## 0.0250000 0.0500000
## Carex.flacca Carex.panicea
## 0.1750000 0.0250000
## Carlina.vulgaris Centaurea.nigra
## 0.2500000 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.1000000
## Centaurium.pulchellum Cerastium.fontanum
## 0.0250000 0.1750000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 0.0250000
## Cirsium.arvense Cirsium.palustre
## 0.9356725 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.0500000 0.0750000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.0500000
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.1250000
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.9929078
## Equisteum.variegatum Erigeron.acer
## 0.0250000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.2750000 0.1750000
## Festuca.rubra Festuca.rubra.agg.
## 0.3750000 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.8000000 0.0250000
## Fissidens.dubius Fissidens.exilis
## 0.0500000 0.0250000
## Fragaria.vesca Galium.aparine
## 0.1500000 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.1000000 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 0.0250000
## Holcus.spp. Holcus.lanatus
## 0.5250000 0.3000000
## Holcus.mollis Homalothecium.lutescens
## 0.7606264 0.0500000
## Hylocomium.splendens Hypericum.perforatum
## 0.1750000 0.1500000
## Hypnum.cupressiforme Hypnum.imponens
## 0.2500000 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 0.0250000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.0750000
## Leontodon.hispidus Leontodon.saxatilis
## 0.1250000 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.3500000 0.1250000
## Lolium.perenne Lophocolea.semiteres
## 0.1000000 0.0250000
## Lotus.corniculatus Luzula.multiflora
## 0.4500000 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.0500000 0.1250000
## Myosotis.arvensis Ononis.repens
## 0.1250000 0.2000000
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.3000000
## Plantago.coronopus Plantago.lanceolata
## 0.1000000 0.3250000
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.0750000
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.1000000 0.1250000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.2000000 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.0750000
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.8333333
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.0500000 0.0500000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.0500000 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.9756098
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.9756098 0.0250000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.2750000 0.0750000
## Thymus.polytrichus Trichostomum.crispulum
## 0.2000000 0.1500000
## Trifolium.campestre Trifolium.dubium
## 0.1750000 0.0500000
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.1250000
## Trisetum.flavescens Tussilago.farfara
## 0.1000000 0.9884679
## Urtica.diocia Veronica.officinalis
## 0.1000000 0.0250000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 0.0250000 0.0250000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.153 1.000
## Alchemilla.mollis Alopercus.pratensis
## 0.023 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.046 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 1.000 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.095 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 1.000
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 0.134
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.175 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.981 1.000
## Carlina.vulgaris Centaurea.nigra
## 1.000 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 1.000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 0.043 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 0.030
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.949 1.000
## Festuca.rubra Festuca.rubra.agg.
## 0.901 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.087 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 1.000 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.792 0.949
## Holcus.mollis Homalothecium.lutescens
## 0.090 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.972 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 1.000 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.936 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.787 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.894
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.862
## Plantago.coronopus Plantago.lanceolata
## 1.000 0.929
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1.000 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.117
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 0.051
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 0.039 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 1.000 1.000
## Trifolium.campestre Trifolium.dubium
## 1.000 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 1.000
## Trisetum.flavescens Tussilago.farfara
## 1.000 0.029
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Alchemilla mollis, indval value of 1 and p value of 0.029 is the indicator species for #Anhydrite.
clustAragonite <-cut(PlantChemistry1$Aragonite, 5, labels=FALSE)
AragoniteIndval <- indval(as.matrix(PlantSpecies1), clustAragonite, type= "long")
gr <- AragoniteIndval$maxcls[AragoniteIndval$pval<=0.05]
iv <- AragoniteIndval$indcls[AragoniteIndval$pval<=0.05]
pv <- AragoniteIndval$pval[AragoniteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[AragoniteIndval$pval<=0.05]
AragoniteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
AragoniteIndvalsummary <- AragoniteIndvalsummary[order(AragoniteIndvalsummary$group,
-AragoniteIndvalsummary$indval),]
print(AragoniteIndvalsummary)
## group indval pvalue freq
## Daucus.carrota 2 0.9523810 0.042 1
## Holcus.spp. 2 0.8078818 0.043 12
summary(indval(as.matrix(PlantSpecies1), clustAragonite))
## cluster indicator_value probability
## Daucus.carrota 2 0.9524 0.041
## Holcus.spp. 2 0.8079 0.042
## Lolium.perenne 2 0.6920 0.049
##
## Sum of probabilities = 133.334
##
## Sum of Indicator Values = 17.58
##
## Sum of Significant Indicator Values = 2.45
##
## Number of Significant Indicators = 3
##
## Significant Indicator Distribution
##
## 2
## 3
print(indval(as.matrix(PlantSpecies1), clustAragonite))
## $relfrq
## 1 5
## Agrostis.spp. 0.200 0
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.025 0
## Alopercus.pratensis 0.025 0
## Angelica.sylvestris 0.050 0
## Anthoxanthum.odoratum 0.150 0
## Anthyllis.vulneraria 0.125 0
## Aphanes.arvensis 0.075 0
## Arrhenatherum.elatius 0.175 1
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.025 0
## Bellis.perennis 0.300 0
## Betula.pubescens 0.025 0
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.100 0
## Brachythecium.rutabulum 0.150 0
## Briza.media 0.075 0
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.025 0
## Bryum.c.f..pallescens 0.075 0
## Bryum.capillare 0.025 0
## Bryum.spp. 0.075 0
## Calliergonella.cupsidata 0.375 0
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.025 0
## Carex.distans 0.050 0
## Carex.flacca 0.175 0
## Carex.panicea 0.025 0
## Carlina.vulgaris 0.250 0
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.100 0
## Centaurium.pulchellum 0.025 0
## Cerastium.fontanum 0.175 0
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.025 0
## Cirsium.arvense 0.075 0
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.050 0
## Cynosurus.cristatus 0.075 0
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.025 1
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.125 0
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.075 0
## Equisteum.variegatum 0.025 0
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.250 1
## Festuca.ovina 0.175 0
## Festuca.rubra 0.350 1
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.075 0
## Fissidens.adianthoides 0.025 0
## Fissidens.dubius 0.050 0
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.150 0
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.075 1
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.025 0
## Holcus.spp. 0.500 1
## Holcus.lanatus 0.275 1
## Holcus.mollis 0.125 1
## Homalothecium.lutescens 0.050 0
## Hylocomium.splendens 0.175 0
## Hypericum.perforatum 0.150 0
## Hypnum.cupressiforme 0.250 0
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.025 0
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.075 0
## Leontodon.hispidus 0.125 0
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.350 0
## Linum.catharticum 0.125 0
## Lolium.perenne 0.075 1
## Lophocolea.semiteres 0.025 0
## Lotus.corniculatus 0.425 1
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.050 0
## Medicago.lupulina 0.125 0
## Myosotis.arvensis 0.125 0
## Ononis.repens 0.200 0
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.300 0
## Plantago.coronopus 0.100 0
## Plantago.lanceolata 0.325 0
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.075 0
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.100 0
## Prunella.vulgaris 0.125 0
## Pseudoscleropidum.purum 0.200 0
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.075 0
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.325 0
## Rhytidadelphus.triquetris 0.050 0
## Rubus.fruticosus 0.050 0
## Sanguisorba.minor.spp.minor 0.050 0
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.050 0
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.050 0
## Stellaria.apetala 0.025 0
## Taraxacum.agg. 0.275 0
## Thuidium.tamariscinum 0.075 0
## Thymus.polytrichus 0.200 0
## Trichostomum.crispulum 0.150 0
## Trifolium.campestre 0.175 0
## Trifolium.dubium 0.050 0
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.125 0
## Trisetum.flavescens 0.100 0
## Tussilago.farfara 0.075 0
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.025 0
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.025 0
## Zygodon.stirtonii 0.025 0
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.0000000
## Agrostis.canina 1.00000000 0.0000000
## Alchemilla.mollis 1.00000000 0.0000000
## Alopercus.pratensis 1.00000000 0.0000000
## Angelica.sylvestris 1.00000000 0.0000000
## Anthoxanthum.odoratum 1.00000000 0.0000000
## Anthyllis.vulneraria 1.00000000 0.0000000
## Aphanes.arvensis 1.00000000 0.0000000
## Arrhenatherum.elatius 0.23371648 0.7662835
## Atrichum.undulatum 1.00000000 0.0000000
## Avenula.pratensis 1.00000000 0.0000000
## Bellis.perennis 1.00000000 0.0000000
## Betula.pubescens 1.00000000 0.0000000
## Blackstonia.perfoliata 1.00000000 0.0000000
## Brachythecium.albicans 1.00000000 0.0000000
## Brachythecium.glareosum 1.00000000 0.0000000
## Brachythecium.mildeanum 1.00000000 0.0000000
## Brachythecium.rutabulum 1.00000000 0.0000000
## Briza.media 1.00000000 0.0000000
## Bromus.hordeaceus 1.00000000 0.0000000
## Bryum.c.f..caespiticium 1.00000000 0.0000000
## Bryum.c.f..pallescens 1.00000000 0.0000000
## Bryum.capillare 1.00000000 0.0000000
## Bryum.spp. 1.00000000 0.0000000
## Calliergonella.cupsidata 1.00000000 0.0000000
## Calypogeia.arguta 1.00000000 0.0000000
## Campanula.rotundifolia 1.00000000 0.0000000
## Carex.distans 1.00000000 0.0000000
## Carex.flacca 1.00000000 0.0000000
## Carex.panicea 1.00000000 0.0000000
## Carlina.vulgaris 1.00000000 0.0000000
## Centaurea.nigra 1.00000000 0.0000000
## Centaurium.erythraea 1.00000000 0.0000000
## Centaurium.littorale 1.00000000 0.0000000
## Centaurium.pulchellum 1.00000000 0.0000000
## Cerastium.fontanum 1.00000000 0.0000000
## Chamaenerion.angustifolium 1.00000000 0.0000000
## Cirriphyllum.piliferum 1.00000000 0.0000000
## Cirsium.arvense 1.00000000 0.0000000
## Cirsium.palustre 1.00000000 0.0000000
## Crepis.capillaris 1.00000000 0.0000000
## Cynosurus.cristatus 1.00000000 0.0000000
## Dactylis.glomerata 1.00000000 0.0000000
## Dactylorhiza.fuchsii 1.00000000 0.0000000
## Danthonia.decumbens 1.00000000 0.0000000
## Daucus.carrota 0.04761905 0.9523810
## Dicranella.spp. 1.00000000 0.0000000
## Dicranum.scoparium 1.00000000 0.0000000
## Epilobium.montanum 1.00000000 0.0000000
## Equisetum.arvense 1.00000000 0.0000000
## Equisteum.variegatum 1.00000000 0.0000000
## Erigeron.acer 1.00000000 0.0000000
## Euphrasia.agg 0.75000000 0.2500000
## Festuca.ovina 1.00000000 0.0000000
## Festuca.rubra 0.16962025 0.8303797
## Festuca.rubra.agg. 1.00000000 0.0000000
## Filipendula.ulmaria 1.00000000 0.0000000
## Fissidens.adianthoides 1.00000000 0.0000000
## Fissidens.dubius 1.00000000 0.0000000
## Fissidens.exilis 1.00000000 0.0000000
## Fragaria.vesca 1.00000000 0.0000000
## Galium.aparine 1.00000000 0.0000000
## Galium.arvense 1.00000000 0.0000000
## Galium.saxatile 1.00000000 0.0000000
## Galium.verum 0.68750000 0.3125000
## Geum.urbanum 1.00000000 0.0000000
## Glechoma.hederacea 1.00000000 0.0000000
## Helicotrichon.spp. 1.00000000 0.0000000
## Heracleum.sphondylium 1.00000000 0.0000000
## Hieracium.spp. 1.00000000 0.0000000
## Holcus.spp. 0.19211823 0.8078818
## Holcus.lanatus 0.54128440 0.4587156
## Holcus.mollis 0.35587762 0.6441224
## Homalothecium.lutescens 1.00000000 0.0000000
## Hylocomium.splendens 1.00000000 0.0000000
## Hypericum.perforatum 1.00000000 0.0000000
## Hypnum.cupressiforme 1.00000000 0.0000000
## Hypnum.imponens 1.00000000 0.0000000
## Hypnum.jutlandicum 1.00000000 0.0000000
## Hypochaeris.radicata 1.00000000 0.0000000
## Kindbergia.praelonga 1.00000000 0.0000000
## Lathyrus.pratensis 1.00000000 0.0000000
## Leontodon.hispidus 1.00000000 0.0000000
## Leontodon.saxatilis 1.00000000 0.0000000
## Leucanthemum.vulgare 1.00000000 0.0000000
## Linum.catharticum 1.00000000 0.0000000
## Lolium.perenne 0.30795848 0.6920415
## Lophocolea.semiteres 1.00000000 0.0000000
## Lotus.corniculatus 0.18857379 0.8114262
## Luzula.multiflora 1.00000000 0.0000000
## Lysimachia.maritima 1.00000000 0.0000000
## Medicago.lupulina 1.00000000 0.0000000
## Myosotis.arvensis 1.00000000 0.0000000
## Ononis.repens 1.00000000 0.0000000
## Oxalis.acetosella 1.00000000 0.0000000
## Pastinaca.sativa 1.00000000 0.0000000
## Pentaglottis.sempervirens 1.00000000 0.0000000
## Pillosella.officinarum 1.00000000 0.0000000
## Plantago.coronopus 1.00000000 0.0000000
## Plantago.lanceolata 1.00000000 0.0000000
## Pleurozium.schreberi 1.00000000 0.0000000
## Poa.annua 1.00000000 0.0000000
## Poa.spp. 1.00000000 0.0000000
## Polytrichum.commune 1.00000000 0.0000000
## Polytrichum.commune.agg. 1.00000000 0.0000000
## Polytrichum.formosum 1.00000000 0.0000000
## Potentilla.reptans 1.00000000 0.0000000
## Prunella.vulgaris 1.00000000 0.0000000
## Pseudoscleropidum.purum 1.00000000 0.0000000
## Pteridium.aquilinum 1.00000000 0.0000000
## Ranunculus.acris 1.00000000 0.0000000
## Ranunculus.repens 1.00000000 0.0000000
## Reseda.lutea 1.00000000 0.0000000
## Rhinanthus.minor 1.00000000 0.0000000
## Rhizomnium.punctatum 1.00000000 0.0000000
## Rhytidadelphus.squarrosus 1.00000000 0.0000000
## Rhytidadelphus.triquetris 1.00000000 0.0000000
## Rubus.fruticosus 1.00000000 0.0000000
## Sanguisorba.minor.spp.minor 1.00000000 0.0000000
## Saniona.uncinata 1.00000000 0.0000000
## Sedum.anglicum 1.00000000 0.0000000
## Senecio.jacobaea 1.00000000 0.0000000
## Senecio.vulgaris 1.00000000 0.0000000
## Sonchus.arvensis 1.00000000 0.0000000
## Stachys.sylvatica 1.00000000 0.0000000
## Stellaria.apetala 1.00000000 0.0000000
## Taraxacum.agg. 1.00000000 0.0000000
## Thuidium.tamariscinum 1.00000000 0.0000000
## Thymus.polytrichus 1.00000000 0.0000000
## Trichostomum.crispulum 1.00000000 0.0000000
## Trifolium.campestre 1.00000000 0.0000000
## Trifolium.dubium 1.00000000 0.0000000
## Trifolium.pratense 1.00000000 0.0000000
## Trifolium.repens 1.00000000 0.0000000
## Trisetum.flavescens 1.00000000 0.0000000
## Tussilago.farfara 1.00000000 0.0000000
## Urtica.diocia 1.00000000 0.0000000
## Veronica.officinalis 1.00000000 0.0000000
## Vicia.sativa 1.00000000 0.0000000
## Viola.riviniana 1.00000000 0.0000000
## Weissia.controversa 1.00000000 0.0000000
## Zygodon.stirtonii 1.00000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.200000000 0.0000000
## Agrostis.canina 0.025000000 0.0000000
## Alchemilla.mollis 0.025000000 0.0000000
## Alopercus.pratensis 0.025000000 0.0000000
## Angelica.sylvestris 0.050000000 0.0000000
## Anthoxanthum.odoratum 0.150000000 0.0000000
## Anthyllis.vulneraria 0.125000000 0.0000000
## Aphanes.arvensis 0.075000000 0.0000000
## Arrhenatherum.elatius 0.040900383 0.7662835
## Atrichum.undulatum 0.050000000 0.0000000
## Avenula.pratensis 0.025000000 0.0000000
## Bellis.perennis 0.300000000 0.0000000
## Betula.pubescens 0.025000000 0.0000000
## Blackstonia.perfoliata 0.025000000 0.0000000
## Brachythecium.albicans 0.025000000 0.0000000
## Brachythecium.glareosum 0.025000000 0.0000000
## Brachythecium.mildeanum 0.100000000 0.0000000
## Brachythecium.rutabulum 0.150000000 0.0000000
## Briza.media 0.075000000 0.0000000
## Bromus.hordeaceus 0.025000000 0.0000000
## Bryum.c.f..caespiticium 0.025000000 0.0000000
## Bryum.c.f..pallescens 0.075000000 0.0000000
## Bryum.capillare 0.025000000 0.0000000
## Bryum.spp. 0.075000000 0.0000000
## Calliergonella.cupsidata 0.375000000 0.0000000
## Calypogeia.arguta 0.200000000 0.0000000
## Campanula.rotundifolia 0.025000000 0.0000000
## Carex.distans 0.050000000 0.0000000
## Carex.flacca 0.175000000 0.0000000
## Carex.panicea 0.025000000 0.0000000
## Carlina.vulgaris 0.250000000 0.0000000
## Centaurea.nigra 0.050000000 0.0000000
## Centaurium.erythraea 0.050000000 0.0000000
## Centaurium.littorale 0.100000000 0.0000000
## Centaurium.pulchellum 0.025000000 0.0000000
## Cerastium.fontanum 0.175000000 0.0000000
## Chamaenerion.angustifolium 0.025000000 0.0000000
## Cirriphyllum.piliferum 0.025000000 0.0000000
## Cirsium.arvense 0.075000000 0.0000000
## Cirsium.palustre 0.050000000 0.0000000
## Crepis.capillaris 0.050000000 0.0000000
## Cynosurus.cristatus 0.075000000 0.0000000
## Dactylis.glomerata 0.150000000 0.0000000
## Dactylorhiza.fuchsii 0.050000000 0.0000000
## Danthonia.decumbens 0.025000000 0.0000000
## Daucus.carrota 0.001190476 0.9523810
## Dicranella.spp. 0.025000000 0.0000000
## Dicranum.scoparium 0.125000000 0.0000000
## Epilobium.montanum 0.075000000 0.0000000
## Equisetum.arvense 0.075000000 0.0000000
## Equisteum.variegatum 0.025000000 0.0000000
## Erigeron.acer 0.050000000 0.0000000
## Euphrasia.agg 0.187500000 0.2500000
## Festuca.ovina 0.175000000 0.0000000
## Festuca.rubra 0.059367089 0.8303797
## Festuca.rubra.agg. 0.025000000 0.0000000
## Filipendula.ulmaria 0.075000000 0.0000000
## Fissidens.adianthoides 0.025000000 0.0000000
## Fissidens.dubius 0.050000000 0.0000000
## Fissidens.exilis 0.025000000 0.0000000
## Fragaria.vesca 0.150000000 0.0000000
## Galium.aparine 0.025000000 0.0000000
## Galium.arvense 0.025000000 0.0000000
## Galium.saxatile 0.025000000 0.0000000
## Galium.verum 0.051562500 0.3125000
## Geum.urbanum 0.025000000 0.0000000
## Glechoma.hederacea 0.025000000 0.0000000
## Helicotrichon.spp. 0.025000000 0.0000000
## Heracleum.sphondylium 0.075000000 0.0000000
## Hieracium.spp. 0.025000000 0.0000000
## Holcus.spp. 0.096059113 0.8078818
## Holcus.lanatus 0.148853211 0.4587156
## Holcus.mollis 0.044484702 0.6441224
## Homalothecium.lutescens 0.050000000 0.0000000
## Hylocomium.splendens 0.175000000 0.0000000
## Hypericum.perforatum 0.150000000 0.0000000
## Hypnum.cupressiforme 0.250000000 0.0000000
## Hypnum.imponens 0.025000000 0.0000000
## Hypnum.jutlandicum 0.075000000 0.0000000
## Hypochaeris.radicata 0.025000000 0.0000000
## Kindbergia.praelonga 0.150000000 0.0000000
## Lathyrus.pratensis 0.075000000 0.0000000
## Leontodon.hispidus 0.125000000 0.0000000
## Leontodon.saxatilis 0.025000000 0.0000000
## Leucanthemum.vulgare 0.350000000 0.0000000
## Linum.catharticum 0.125000000 0.0000000
## Lolium.perenne 0.023096886 0.6920415
## Lophocolea.semiteres 0.025000000 0.0000000
## Lotus.corniculatus 0.080143863 0.8114262
## Luzula.multiflora 0.025000000 0.0000000
## Lysimachia.maritima 0.050000000 0.0000000
## Medicago.lupulina 0.125000000 0.0000000
## Myosotis.arvensis 0.125000000 0.0000000
## Ononis.repens 0.200000000 0.0000000
## Oxalis.acetosella 0.025000000 0.0000000
## Pastinaca.sativa 0.025000000 0.0000000
## Pentaglottis.sempervirens 0.025000000 0.0000000
## Pillosella.officinarum 0.300000000 0.0000000
## Plantago.coronopus 0.100000000 0.0000000
## Plantago.lanceolata 0.325000000 0.0000000
## Pleurozium.schreberi 0.100000000 0.0000000
## Poa.annua 0.075000000 0.0000000
## Poa.spp. 0.025000000 0.0000000
## Polytrichum.commune 0.025000000 0.0000000
## Polytrichum.commune.agg. 0.025000000 0.0000000
## Polytrichum.formosum 0.025000000 0.0000000
## Potentilla.reptans 0.100000000 0.0000000
## Prunella.vulgaris 0.125000000 0.0000000
## Pseudoscleropidum.purum 0.200000000 0.0000000
## Pteridium.aquilinum 0.075000000 0.0000000
## Ranunculus.acris 0.025000000 0.0000000
## Ranunculus.repens 0.075000000 0.0000000
## Reseda.lutea 0.025000000 0.0000000
## Rhinanthus.minor 0.025000000 0.0000000
## Rhizomnium.punctatum 0.025000000 0.0000000
## Rhytidadelphus.squarrosus 0.325000000 0.0000000
## Rhytidadelphus.triquetris 0.050000000 0.0000000
## Rubus.fruticosus 0.050000000 0.0000000
## Sanguisorba.minor.spp.minor 0.050000000 0.0000000
## Saniona.uncinata 0.050000000 0.0000000
## Sedum.anglicum 0.025000000 0.0000000
## Senecio.jacobaea 0.050000000 0.0000000
## Senecio.vulgaris 0.025000000 0.0000000
## Sonchus.arvensis 0.025000000 0.0000000
## Stachys.sylvatica 0.050000000 0.0000000
## Stellaria.apetala 0.025000000 0.0000000
## Taraxacum.agg. 0.275000000 0.0000000
## Thuidium.tamariscinum 0.075000000 0.0000000
## Thymus.polytrichus 0.200000000 0.0000000
## Trichostomum.crispulum 0.150000000 0.0000000
## Trifolium.campestre 0.175000000 0.0000000
## Trifolium.dubium 0.050000000 0.0000000
## Trifolium.pratense 0.100000000 0.0000000
## Trifolium.repens 0.125000000 0.0000000
## Trisetum.flavescens 0.100000000 0.0000000
## Tussilago.farfara 0.075000000 0.0000000
## Urtica.diocia 0.100000000 0.0000000
## Veronica.officinalis 0.025000000 0.0000000
## Vicia.sativa 0.025000000 0.0000000
## Viola.riviniana 0.025000000 0.0000000
## Weissia.controversa 0.025000000 0.0000000
## Zygodon.stirtonii 0.025000000 0.0000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 2 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 2
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 2 1
## Festuca.rubra Festuca.rubra.agg.
## 2 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 2 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 2 2
## Holcus.mollis Homalothecium.lutescens
## 2 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 2 1
## Lotus.corniculatus Luzula.multiflora
## 2 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 1 1
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.2000000 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 0.0250000 0.0250000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.0500000 0.1500000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.1250000 0.0750000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.7662835 0.0500000
## Avenula.pratensis Bellis.perennis
## 0.0250000 0.3000000
## Betula.pubescens Blackstonia.perfoliata
## 0.0250000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.1000000 0.1500000
## Briza.media Bromus.hordeaceus
## 0.0750000 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.0250000 0.0750000
## Bryum.capillare Bryum.spp.
## 0.0250000 0.0750000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.3750000 0.2000000
## Campanula.rotundifolia Carex.distans
## 0.0250000 0.0500000
## Carex.flacca Carex.panicea
## 0.1750000 0.0250000
## Carlina.vulgaris Centaurea.nigra
## 0.2500000 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.1000000
## Centaurium.pulchellum Cerastium.fontanum
## 0.0250000 0.1750000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 0.0250000
## Cirsium.arvense Cirsium.palustre
## 0.0750000 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.0500000 0.0750000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.9523810
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.1250000
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.0750000
## Equisteum.variegatum Erigeron.acer
## 0.0250000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.2500000 0.1750000
## Festuca.rubra Festuca.rubra.agg.
## 0.8303797 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.0750000 0.0250000
## Fissidens.dubius Fissidens.exilis
## 0.0500000 0.0250000
## Fragaria.vesca Galium.aparine
## 0.1500000 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.3125000 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 0.0250000
## Holcus.spp. Holcus.lanatus
## 0.8078818 0.4587156
## Holcus.mollis Homalothecium.lutescens
## 0.6441224 0.0500000
## Hylocomium.splendens Hypericum.perforatum
## 0.1750000 0.1500000
## Hypnum.cupressiforme Hypnum.imponens
## 0.2500000 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 0.0250000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.0750000
## Leontodon.hispidus Leontodon.saxatilis
## 0.1250000 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.3500000 0.1250000
## Lolium.perenne Lophocolea.semiteres
## 0.6920415 0.0250000
## Lotus.corniculatus Luzula.multiflora
## 0.8114262 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.0500000 0.1250000
## Myosotis.arvensis Ononis.repens
## 0.1250000 0.2000000
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.3000000
## Plantago.coronopus Plantago.lanceolata
## 0.1000000 0.3250000
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.0750000
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.1000000 0.1250000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.2000000 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.0750000
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.3250000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.0500000 0.0500000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.0500000 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.0500000
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.0500000 0.0250000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.2750000 0.0750000
## Thymus.polytrichus Trichostomum.crispulum
## 0.2000000 0.1500000
## Trifolium.campestre Trifolium.dubium
## 0.1750000 0.0500000
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.1250000
## Trisetum.flavescens Tussilago.farfara
## 0.1000000 0.0750000
## Urtica.diocia Veronica.officinalis
## 0.1000000 0.0250000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 0.0250000 0.0250000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1.000 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 1.000 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.073 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 1.000
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.914 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.973 1.000
## Carlina.vulgaris Centaurea.nigra
## 1.000 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 1.000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 0.048
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 1.000 1.000
## Festuca.rubra Festuca.rubra.agg.
## 0.111 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 0.079 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.061 0.232
## Holcus.mollis Homalothecium.lutescens
## 0.104 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.978 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 1.000 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.925 1.000
## Lolium.perenne Lophocolea.semiteres
## 0.051 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.106 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.904
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.889
## Plantago.coronopus Plantago.lanceolata
## 1.000 0.923
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1.000 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 1.000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 1.000 1.000
## Trifolium.campestre Trifolium.dubium
## 1.000 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 1.000
## Trisetum.flavescens Tussilago.farfara
## 1.000 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Daucus carrota is the indicator species for Aragonite, with a high indicator value of #0.9524 and a low p value of 0.042.
clustAugite <-cut(PlantChemistry1$Augite, 5, labels=FALSE)
AugiteIndval <- indval(as.matrix(PlantSpecies1), clustAugite, type= "long")
gr <- AugiteIndval$maxcls[AugiteIndval$pval<=0.05]
iv <- AugiteIndval$indcls[AugiteIndval$pval<=0.05]
pv <- AugiteIndval$pval[AugiteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[AugiteIndval$pval<=0.05]
AugiteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
AugiteIndvalsummary <- AugiteIndvalsummary[order(AugiteIndvalsummary$group,
-AugiteIndvalsummary$indval),]
print(AugiteIndvalsummary)
## group indval pvalue freq
## Briza.media 2 0.9969297 0.033 1
## Galium.verum 2 0.9750693 0.028 1
## Anthyllis.vulneraria 2 0.9451163 0.048 3
summary(indval(as.matrix(PlantSpecies1), clustAugite))
## cluster indicator_value probability
## Briza.media 2 0.9969 0.026
## Galium.verum 2 0.9751 0.027
## Anthyllis.vulneraria 2 0.9451 0.046
## Sanguisorba.minor.spp.minor 2 0.9217 0.046
##
## Sum of probabilities = 131.496
##
## Sum of Indicator Values = 19.94
##
## Sum of Significant Indicator Values = 3.84
##
## Number of Significant Indicators = 4
##
## Significant Indicator Distribution
##
## 2
## 4
print(indval(as.matrix(PlantSpecies1), clustAugite))
## $relfrq
## 1 5
## Agrostis.spp. 0.200 0
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.025 0
## Alopercus.pratensis 0.025 0
## Angelica.sylvestris 0.050 0
## Anthoxanthum.odoratum 0.150 0
## Anthyllis.vulneraria 0.100 1
## Aphanes.arvensis 0.075 0
## Arrhenatherum.elatius 0.200 0
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.025 0
## Bellis.perennis 0.275 1
## Betula.pubescens 0.025 0
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.100 0
## Brachythecium.rutabulum 0.150 0
## Briza.media 0.050 1
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.025 0
## Bryum.c.f..pallescens 0.075 0
## Bryum.capillare 0.025 0
## Bryum.spp. 0.075 0
## Calliergonella.cupsidata 0.350 1
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.025 0
## Carex.distans 0.050 0
## Carex.flacca 0.175 0
## Carex.panicea 0.025 0
## Carlina.vulgaris 0.250 0
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.100 0
## Centaurium.pulchellum 0.025 0
## Cerastium.fontanum 0.150 1
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.025 0
## Cirsium.arvense 0.075 0
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.050 0
## Cynosurus.cristatus 0.075 0
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.050 0
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.125 0
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.075 0
## Equisteum.variegatum 0.025 0
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.250 1
## Festuca.ovina 0.175 0
## Festuca.rubra 0.350 1
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.075 0
## Fissidens.adianthoides 0.025 0
## Fissidens.dubius 0.050 0
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.150 0
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.075 1
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.025 0
## Holcus.spp. 0.525 0
## Holcus.lanatus 0.275 1
## Holcus.mollis 0.150 0
## Homalothecium.lutescens 0.050 0
## Hylocomium.splendens 0.175 0
## Hypericum.perforatum 0.150 0
## Hypnum.cupressiforme 0.250 0
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.025 0
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.075 0
## Leontodon.hispidus 0.125 0
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.350 0
## Linum.catharticum 0.125 0
## Lolium.perenne 0.100 0
## Lophocolea.semiteres 0.025 0
## Lotus.corniculatus 0.425 1
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.050 0
## Medicago.lupulina 0.125 0
## Myosotis.arvensis 0.125 0
## Ononis.repens 0.200 0
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.300 0
## Plantago.coronopus 0.100 0
## Plantago.lanceolata 0.325 0
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.075 0
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.100 0
## Prunella.vulgaris 0.125 0
## Pseudoscleropidum.purum 0.200 0
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.075 0
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.325 0
## Rhytidadelphus.triquetris 0.050 0
## Rubus.fruticosus 0.050 0
## Sanguisorba.minor.spp.minor 0.025 1
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.050 0
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.050 0
## Stellaria.apetala 0.025 0
## Taraxacum.agg. 0.250 1
## Thuidium.tamariscinum 0.075 0
## Thymus.polytrichus 0.200 0
## Trichostomum.crispulum 0.150 0
## Trifolium.campestre 0.150 1
## Trifolium.dubium 0.050 0
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.100 1
## Trisetum.flavescens 0.100 0
## Tussilago.farfara 0.075 0
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.025 0
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.025 0
## Zygodon.stirtonii 0.025 0
##
## $relabu
## 1 5
## Agrostis.spp. 1.000000000 0.00000000
## Agrostis.canina 1.000000000 0.00000000
## Alchemilla.mollis 1.000000000 0.00000000
## Alopercus.pratensis 1.000000000 0.00000000
## Angelica.sylvestris 1.000000000 0.00000000
## Anthoxanthum.odoratum 1.000000000 0.00000000
## Anthyllis.vulneraria 0.054883721 0.94511628
## Aphanes.arvensis 1.000000000 0.00000000
## Arrhenatherum.elatius 1.000000000 0.00000000
## Atrichum.undulatum 1.000000000 0.00000000
## Avenula.pratensis 1.000000000 0.00000000
## Bellis.perennis 0.633027523 0.36697248
## Betula.pubescens 1.000000000 0.00000000
## Blackstonia.perfoliata 1.000000000 0.00000000
## Brachythecium.albicans 1.000000000 0.00000000
## Brachythecium.glareosum 1.000000000 0.00000000
## Brachythecium.mildeanum 1.000000000 0.00000000
## Brachythecium.rutabulum 1.000000000 0.00000000
## Briza.media 0.003070255 0.99692975
## Bromus.hordeaceus 1.000000000 0.00000000
## Bryum.c.f..caespiticium 1.000000000 0.00000000
## Bryum.c.f..pallescens 1.000000000 0.00000000
## Bryum.capillare 1.000000000 0.00000000
## Bryum.spp. 1.000000000 0.00000000
## Calliergonella.cupsidata 0.523809524 0.47619048
## Calypogeia.arguta 1.000000000 0.00000000
## Campanula.rotundifolia 1.000000000 0.00000000
## Carex.distans 1.000000000 0.00000000
## Carex.flacca 1.000000000 0.00000000
## Carex.panicea 1.000000000 0.00000000
## Carlina.vulgaris 1.000000000 0.00000000
## Centaurea.nigra 1.000000000 0.00000000
## Centaurium.erythraea 1.000000000 0.00000000
## Centaurium.littorale 1.000000000 0.00000000
## Centaurium.pulchellum 1.000000000 0.00000000
## Cerastium.fontanum 0.230769231 0.76923077
## Chamaenerion.angustifolium 1.000000000 0.00000000
## Cirriphyllum.piliferum 1.000000000 0.00000000
## Cirsium.arvense 1.000000000 0.00000000
## Cirsium.palustre 1.000000000 0.00000000
## Crepis.capillaris 1.000000000 0.00000000
## Cynosurus.cristatus 1.000000000 0.00000000
## Dactylis.glomerata 1.000000000 0.00000000
## Dactylorhiza.fuchsii 1.000000000 0.00000000
## Danthonia.decumbens 1.000000000 0.00000000
## Daucus.carrota 1.000000000 0.00000000
## Dicranella.spp. 1.000000000 0.00000000
## Dicranum.scoparium 1.000000000 0.00000000
## Epilobium.montanum 1.000000000 0.00000000
## Equisetum.arvense 1.000000000 0.00000000
## Equisteum.variegatum 1.000000000 0.00000000
## Erigeron.acer 1.000000000 0.00000000
## Euphrasia.agg 0.160419790 0.83958021
## Festuca.ovina 1.000000000 0.00000000
## Festuca.rubra 0.903614458 0.09638554
## Festuca.rubra.agg. 1.000000000 0.00000000
## Filipendula.ulmaria 1.000000000 0.00000000
## Fissidens.adianthoides 1.000000000 0.00000000
## Fissidens.dubius 1.000000000 0.00000000
## Fissidens.exilis 1.000000000 0.00000000
## Fragaria.vesca 1.000000000 0.00000000
## Galium.aparine 1.000000000 0.00000000
## Galium.arvense 1.000000000 0.00000000
## Galium.saxatile 1.000000000 0.00000000
## Galium.verum 0.024930748 0.97506925
## Geum.urbanum 1.000000000 0.00000000
## Glechoma.hederacea 1.000000000 0.00000000
## Helicotrichon.spp. 1.000000000 0.00000000
## Heracleum.sphondylium 1.000000000 0.00000000
## Hieracium.spp. 1.000000000 0.00000000
## Holcus.spp. 1.000000000 0.00000000
## Holcus.lanatus 0.857142857 0.14285714
## Holcus.mollis 1.000000000 0.00000000
## Homalothecium.lutescens 1.000000000 0.00000000
## Hylocomium.splendens 1.000000000 0.00000000
## Hypericum.perforatum 1.000000000 0.00000000
## Hypnum.cupressiforme 1.000000000 0.00000000
## Hypnum.imponens 1.000000000 0.00000000
## Hypnum.jutlandicum 1.000000000 0.00000000
## Hypochaeris.radicata 1.000000000 0.00000000
## Kindbergia.praelonga 1.000000000 0.00000000
## Lathyrus.pratensis 1.000000000 0.00000000
## Leontodon.hispidus 1.000000000 0.00000000
## Leontodon.saxatilis 1.000000000 0.00000000
## Leucanthemum.vulgare 1.000000000 0.00000000
## Linum.catharticum 1.000000000 0.00000000
## Lolium.perenne 1.000000000 0.00000000
## Lophocolea.semiteres 1.000000000 0.00000000
## Lotus.corniculatus 0.579193454 0.42080655
## Luzula.multiflora 1.000000000 0.00000000
## Lysimachia.maritima 1.000000000 0.00000000
## Medicago.lupulina 1.000000000 0.00000000
## Myosotis.arvensis 1.000000000 0.00000000
## Ononis.repens 1.000000000 0.00000000
## Oxalis.acetosella 1.000000000 0.00000000
## Pastinaca.sativa 1.000000000 0.00000000
## Pentaglottis.sempervirens 1.000000000 0.00000000
## Pillosella.officinarum 1.000000000 0.00000000
## Plantago.coronopus 1.000000000 0.00000000
## Plantago.lanceolata 1.000000000 0.00000000
## Pleurozium.schreberi 1.000000000 0.00000000
## Poa.annua 1.000000000 0.00000000
## Poa.spp. 1.000000000 0.00000000
## Polytrichum.commune 1.000000000 0.00000000
## Polytrichum.commune.agg. 1.000000000 0.00000000
## Polytrichum.formosum 1.000000000 0.00000000
## Potentilla.reptans 1.000000000 0.00000000
## Prunella.vulgaris 1.000000000 0.00000000
## Pseudoscleropidum.purum 1.000000000 0.00000000
## Pteridium.aquilinum 1.000000000 0.00000000
## Ranunculus.acris 1.000000000 0.00000000
## Ranunculus.repens 1.000000000 0.00000000
## Reseda.lutea 1.000000000 0.00000000
## Rhinanthus.minor 1.000000000 0.00000000
## Rhizomnium.punctatum 1.000000000 0.00000000
## Rhytidadelphus.squarrosus 1.000000000 0.00000000
## Rhytidadelphus.triquetris 1.000000000 0.00000000
## Rubus.fruticosus 1.000000000 0.00000000
## Sanguisorba.minor.spp.minor 0.078341014 0.92165899
## Saniona.uncinata 1.000000000 0.00000000
## Sedum.anglicum 1.000000000 0.00000000
## Senecio.jacobaea 1.000000000 0.00000000
## Senecio.vulgaris 1.000000000 0.00000000
## Sonchus.arvensis 1.000000000 0.00000000
## Stachys.sylvatica 1.000000000 0.00000000
## Stellaria.apetala 1.000000000 0.00000000
## Taraxacum.agg. 0.365079365 0.63492063
## Thuidium.tamariscinum 1.000000000 0.00000000
## Thymus.polytrichus 1.000000000 0.00000000
## Trichostomum.crispulum 1.000000000 0.00000000
## Trifolium.campestre 0.097435897 0.90256410
## Trifolium.dubium 1.000000000 0.00000000
## Trifolium.pratense 1.000000000 0.00000000
## Trifolium.repens 0.259259259 0.74074074
## Trisetum.flavescens 1.000000000 0.00000000
## Tussilago.farfara 1.000000000 0.00000000
## Urtica.diocia 1.000000000 0.00000000
## Veronica.officinalis 1.000000000 0.00000000
## Vicia.sativa 1.000000000 0.00000000
## Viola.riviniana 1.000000000 0.00000000
## Weissia.controversa 1.000000000 0.00000000
## Zygodon.stirtonii 1.000000000 0.00000000
##
## $indval
## 1 5
## Agrostis.spp. 0.2000000000 0.00000000
## Agrostis.canina 0.0250000000 0.00000000
## Alchemilla.mollis 0.0250000000 0.00000000
## Alopercus.pratensis 0.0250000000 0.00000000
## Angelica.sylvestris 0.0500000000 0.00000000
## Anthoxanthum.odoratum 0.1500000000 0.00000000
## Anthyllis.vulneraria 0.0054883721 0.94511628
## Aphanes.arvensis 0.0750000000 0.00000000
## Arrhenatherum.elatius 0.2000000000 0.00000000
## Atrichum.undulatum 0.0500000000 0.00000000
## Avenula.pratensis 0.0250000000 0.00000000
## Bellis.perennis 0.1740825688 0.36697248
## Betula.pubescens 0.0250000000 0.00000000
## Blackstonia.perfoliata 0.0250000000 0.00000000
## Brachythecium.albicans 0.0250000000 0.00000000
## Brachythecium.glareosum 0.0250000000 0.00000000
## Brachythecium.mildeanum 0.1000000000 0.00000000
## Brachythecium.rutabulum 0.1500000000 0.00000000
## Briza.media 0.0001535127 0.99692975
## Bromus.hordeaceus 0.0250000000 0.00000000
## Bryum.c.f..caespiticium 0.0250000000 0.00000000
## Bryum.c.f..pallescens 0.0750000000 0.00000000
## Bryum.capillare 0.0250000000 0.00000000
## Bryum.spp. 0.0750000000 0.00000000
## Calliergonella.cupsidata 0.1833333333 0.47619048
## Calypogeia.arguta 0.2000000000 0.00000000
## Campanula.rotundifolia 0.0250000000 0.00000000
## Carex.distans 0.0500000000 0.00000000
## Carex.flacca 0.1750000000 0.00000000
## Carex.panicea 0.0250000000 0.00000000
## Carlina.vulgaris 0.2500000000 0.00000000
## Centaurea.nigra 0.0500000000 0.00000000
## Centaurium.erythraea 0.0500000000 0.00000000
## Centaurium.littorale 0.1000000000 0.00000000
## Centaurium.pulchellum 0.0250000000 0.00000000
## Cerastium.fontanum 0.0346153846 0.76923077
## Chamaenerion.angustifolium 0.0250000000 0.00000000
## Cirriphyllum.piliferum 0.0250000000 0.00000000
## Cirsium.arvense 0.0750000000 0.00000000
## Cirsium.palustre 0.0500000000 0.00000000
## Crepis.capillaris 0.0500000000 0.00000000
## Cynosurus.cristatus 0.0750000000 0.00000000
## Dactylis.glomerata 0.1500000000 0.00000000
## Dactylorhiza.fuchsii 0.0500000000 0.00000000
## Danthonia.decumbens 0.0250000000 0.00000000
## Daucus.carrota 0.0500000000 0.00000000
## Dicranella.spp. 0.0250000000 0.00000000
## Dicranum.scoparium 0.1250000000 0.00000000
## Epilobium.montanum 0.0750000000 0.00000000
## Equisetum.arvense 0.0750000000 0.00000000
## Equisteum.variegatum 0.0250000000 0.00000000
## Erigeron.acer 0.0500000000 0.00000000
## Euphrasia.agg 0.0401049475 0.83958021
## Festuca.ovina 0.1750000000 0.00000000
## Festuca.rubra 0.3162650602 0.09638554
## Festuca.rubra.agg. 0.0250000000 0.00000000
## Filipendula.ulmaria 0.0750000000 0.00000000
## Fissidens.adianthoides 0.0250000000 0.00000000
## Fissidens.dubius 0.0500000000 0.00000000
## Fissidens.exilis 0.0250000000 0.00000000
## Fragaria.vesca 0.1500000000 0.00000000
## Galium.aparine 0.0250000000 0.00000000
## Galium.arvense 0.0250000000 0.00000000
## Galium.saxatile 0.0250000000 0.00000000
## Galium.verum 0.0018698061 0.97506925
## Geum.urbanum 0.0250000000 0.00000000
## Glechoma.hederacea 0.0250000000 0.00000000
## Helicotrichon.spp. 0.0250000000 0.00000000
## Heracleum.sphondylium 0.0750000000 0.00000000
## Hieracium.spp. 0.0250000000 0.00000000
## Holcus.spp. 0.5250000000 0.00000000
## Holcus.lanatus 0.2357142857 0.14285714
## Holcus.mollis 0.1500000000 0.00000000
## Homalothecium.lutescens 0.0500000000 0.00000000
## Hylocomium.splendens 0.1750000000 0.00000000
## Hypericum.perforatum 0.1500000000 0.00000000
## Hypnum.cupressiforme 0.2500000000 0.00000000
## Hypnum.imponens 0.0250000000 0.00000000
## Hypnum.jutlandicum 0.0750000000 0.00000000
## Hypochaeris.radicata 0.0250000000 0.00000000
## Kindbergia.praelonga 0.1500000000 0.00000000
## Lathyrus.pratensis 0.0750000000 0.00000000
## Leontodon.hispidus 0.1250000000 0.00000000
## Leontodon.saxatilis 0.0250000000 0.00000000
## Leucanthemum.vulgare 0.3500000000 0.00000000
## Linum.catharticum 0.1250000000 0.00000000
## Lolium.perenne 0.1000000000 0.00000000
## Lophocolea.semiteres 0.0250000000 0.00000000
## Lotus.corniculatus 0.2461572180 0.42080655
## Luzula.multiflora 0.0250000000 0.00000000
## Lysimachia.maritima 0.0500000000 0.00000000
## Medicago.lupulina 0.1250000000 0.00000000
## Myosotis.arvensis 0.1250000000 0.00000000
## Ononis.repens 0.2000000000 0.00000000
## Oxalis.acetosella 0.0250000000 0.00000000
## Pastinaca.sativa 0.0250000000 0.00000000
## Pentaglottis.sempervirens 0.0250000000 0.00000000
## Pillosella.officinarum 0.3000000000 0.00000000
## Plantago.coronopus 0.1000000000 0.00000000
## Plantago.lanceolata 0.3250000000 0.00000000
## Pleurozium.schreberi 0.1000000000 0.00000000
## Poa.annua 0.0750000000 0.00000000
## Poa.spp. 0.0250000000 0.00000000
## Polytrichum.commune 0.0250000000 0.00000000
## Polytrichum.commune.agg. 0.0250000000 0.00000000
## Polytrichum.formosum 0.0250000000 0.00000000
## Potentilla.reptans 0.1000000000 0.00000000
## Prunella.vulgaris 0.1250000000 0.00000000
## Pseudoscleropidum.purum 0.2000000000 0.00000000
## Pteridium.aquilinum 0.0750000000 0.00000000
## Ranunculus.acris 0.0250000000 0.00000000
## Ranunculus.repens 0.0750000000 0.00000000
## Reseda.lutea 0.0250000000 0.00000000
## Rhinanthus.minor 0.0250000000 0.00000000
## Rhizomnium.punctatum 0.0250000000 0.00000000
## Rhytidadelphus.squarrosus 0.3250000000 0.00000000
## Rhytidadelphus.triquetris 0.0500000000 0.00000000
## Rubus.fruticosus 0.0500000000 0.00000000
## Sanguisorba.minor.spp.minor 0.0019585253 0.92165899
## Saniona.uncinata 0.0500000000 0.00000000
## Sedum.anglicum 0.0250000000 0.00000000
## Senecio.jacobaea 0.0500000000 0.00000000
## Senecio.vulgaris 0.0250000000 0.00000000
## Sonchus.arvensis 0.0250000000 0.00000000
## Stachys.sylvatica 0.0500000000 0.00000000
## Stellaria.apetala 0.0250000000 0.00000000
## Taraxacum.agg. 0.0912698413 0.63492063
## Thuidium.tamariscinum 0.0750000000 0.00000000
## Thymus.polytrichus 0.2000000000 0.00000000
## Trichostomum.crispulum 0.1500000000 0.00000000
## Trifolium.campestre 0.0146153846 0.90256410
## Trifolium.dubium 0.0500000000 0.00000000
## Trifolium.pratense 0.1000000000 0.00000000
## Trifolium.repens 0.0259259259 0.74074074
## Trisetum.flavescens 0.1000000000 0.00000000
## Tussilago.farfara 0.0750000000 0.00000000
## Urtica.diocia 0.1000000000 0.00000000
## Veronica.officinalis 0.0250000000 0.00000000
## Vicia.sativa 0.0250000000 0.00000000
## Viola.riviniana 0.0250000000 0.00000000
## Weissia.controversa 0.0250000000 0.00000000
## Zygodon.stirtonii 0.0250000000 0.00000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 2 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 2
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 2 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 2 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 2 1
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 2 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 1
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 2 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 2 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 2 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 2 1
## Trifolium.pratense Trifolium.repens
## 1 2
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.2000000 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 0.0250000 0.0250000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.0500000 0.1500000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.9451163 0.0750000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.2000000 0.0500000
## Avenula.pratensis Bellis.perennis
## 0.0250000 0.3669725
## Betula.pubescens Blackstonia.perfoliata
## 0.0250000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.1000000 0.1500000
## Briza.media Bromus.hordeaceus
## 0.9969297 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.0250000 0.0750000
## Bryum.capillare Bryum.spp.
## 0.0250000 0.0750000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.4761905 0.2000000
## Campanula.rotundifolia Carex.distans
## 0.0250000 0.0500000
## Carex.flacca Carex.panicea
## 0.1750000 0.0250000
## Carlina.vulgaris Centaurea.nigra
## 0.2500000 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.1000000
## Centaurium.pulchellum Cerastium.fontanum
## 0.0250000 0.7692308
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 0.0250000
## Cirsium.arvense Cirsium.palustre
## 0.0750000 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.0500000 0.0750000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.0500000
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.1250000
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.0750000
## Equisteum.variegatum Erigeron.acer
## 0.0250000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.8395802 0.1750000
## Festuca.rubra Festuca.rubra.agg.
## 0.3162651 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.0750000 0.0250000
## Fissidens.dubius Fissidens.exilis
## 0.0500000 0.0250000
## Fragaria.vesca Galium.aparine
## 0.1500000 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.9750693 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 0.0250000
## Holcus.spp. Holcus.lanatus
## 0.5250000 0.2357143
## Holcus.mollis Homalothecium.lutescens
## 0.1500000 0.0500000
## Hylocomium.splendens Hypericum.perforatum
## 0.1750000 0.1500000
## Hypnum.cupressiforme Hypnum.imponens
## 0.2500000 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 0.0250000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.0750000
## Leontodon.hispidus Leontodon.saxatilis
## 0.1250000 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.3500000 0.1250000
## Lolium.perenne Lophocolea.semiteres
## 0.1000000 0.0250000
## Lotus.corniculatus Luzula.multiflora
## 0.4208065 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.0500000 0.1250000
## Myosotis.arvensis Ononis.repens
## 0.1250000 0.2000000
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.3000000
## Plantago.coronopus Plantago.lanceolata
## 0.1000000 0.3250000
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.0750000
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.1000000 0.1250000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.2000000 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.0750000
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.3250000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.0500000 0.0500000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.9216590 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.0500000
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.0500000 0.0250000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.6349206 0.0750000
## Thymus.polytrichus Trichostomum.crispulum
## 0.2000000 0.1500000
## Trifolium.campestre Trifolium.dubium
## 0.9025641 0.0500000
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.7407407
## Trisetum.flavescens Tussilago.farfara
## 0.1000000 0.0750000
## Urtica.diocia Veronica.officinalis
## 0.1000000 0.0250000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 0.0250000 0.0250000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1.000 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.051 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 1.000 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.278
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 0.022 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.273 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.974 1.000
## Carlina.vulgaris Centaurea.nigra
## 1.000 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.169
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.080 1.000
## Festuca.rubra Festuca.rubra.agg.
## 0.916 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 0.031 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.771 1.000
## Holcus.mollis Homalothecium.lutescens
## 0.980 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.970 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 1.000 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.929 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.845 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.878
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.867
## Plantago.coronopus Plantago.lanceolata
## 1.000 0.930
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1.000 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 1.000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.046 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.288 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 1.000 1.000
## Trifolium.campestre Trifolium.dubium
## 0.050 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 0.072
## Trisetum.flavescens Tussilago.farfara
## 1.000 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Briza media has a high indval value of 0.997 and a low p value of 0.023, making it the #indicator species for Augite.
clustBiotite <-cut(PlantChemistry1$Biotite, 5, labels=FALSE)
BiotiteIndval <- indval(as.matrix(PlantSpecies1), clustBiotite, type= "long")
gr <- BiotiteIndval$maxcls[BiotiteIndval$pval<=0.05]
iv <- BiotiteIndval$indcls[BiotiteIndval$pval<=0.05]
pv <- BiotiteIndval$pval[BiotiteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[BiotiteIndval$pval<=0.05]
BiotiteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
BiotiteIndvalsummary <- BiotiteIndvalsummary[order(BiotiteIndvalsummary$group,
-BiotiteIndvalsummary$indval),]
print(BiotiteIndvalsummary)
## group indval pvalue freq
## Rhytidadelphus.squarrosus 2 0.8048780 0.037 2
## Euphrasia.agg 2 0.7841270 0.030 7
## Crepis.capillaris 2 0.4936709 0.050 3
## Bryum.c.f..pallescens 2 0.4756098 0.044 1
summary(indval(as.matrix(PlantSpecies1), clustBiotite))
## cluster indicator_value probability
## Rhytidadelphus.squarrosus 2 0.8049 0.039
## Euphrasia.agg 2 0.7841 0.028
## Trifolium.dubium 2 0.4820 0.046
## Bryum.c.f..pallescens 2 0.4756 0.048
##
## Sum of probabilities = 119.571
##
## Sum of Indicator Values = 19.39
##
## Sum of Significant Indicator Values = 2.55
##
## Number of Significant Indicators = 4
##
## Significant Indicator Distribution
##
## 2
## 4
print(indval(as.matrix(PlantSpecies1), clustBiotite))
## $relfrq
## 1 5
## Agrostis.spp. 0.20512821 0.0
## Agrostis.canina 0.02564103 0.0
## Alchemilla.mollis 0.02564103 0.0
## Alopercus.pratensis 0.02564103 0.0
## Angelica.sylvestris 0.05128205 0.0
## Anthoxanthum.odoratum 0.12820513 0.5
## Anthyllis.vulneraria 0.12820513 0.0
## Aphanes.arvensis 0.07692308 0.0
## Arrhenatherum.elatius 0.17948718 0.5
## Atrichum.undulatum 0.05128205 0.0
## Avenula.pratensis 0.02564103 0.0
## Bellis.perennis 0.28205128 0.5
## Betula.pubescens 0.02564103 0.0
## Blackstonia.perfoliata 0.02564103 0.0
## Brachythecium.albicans 0.02564103 0.0
## Brachythecium.glareosum 0.02564103 0.0
## Brachythecium.mildeanum 0.10256410 0.0
## Brachythecium.rutabulum 0.15384615 0.0
## Briza.media 0.07692308 0.0
## Bromus.hordeaceus 0.02564103 0.0
## Bryum.c.f..caespiticium 0.02564103 0.0
## Bryum.c.f..pallescens 0.05128205 0.5
## Bryum.capillare 0.02564103 0.0
## Bryum.spp. 0.07692308 0.0
## Calliergonella.cupsidata 0.38461538 0.0
## Calypogeia.arguta 0.20512821 0.0
## Campanula.rotundifolia 0.02564103 0.0
## Carex.distans 0.05128205 0.0
## Carex.flacca 0.17948718 0.0
## Carex.panicea 0.02564103 0.0
## Carlina.vulgaris 0.23076923 0.5
## Centaurea.nigra 0.05128205 0.0
## Centaurium.erythraea 0.05128205 0.0
## Centaurium.littorale 0.10256410 0.0
## Centaurium.pulchellum 0.02564103 0.0
## Cerastium.fontanum 0.15384615 0.5
## Chamaenerion.angustifolium 0.02564103 0.0
## Cirriphyllum.piliferum 0.02564103 0.0
## Cirsium.arvense 0.07692308 0.0
## Cirsium.palustre 0.05128205 0.0
## Crepis.capillaris 0.02564103 0.5
## Cynosurus.cristatus 0.07692308 0.0
## Dactylis.glomerata 0.12820513 0.5
## Dactylorhiza.fuchsii 0.05128205 0.0
## Danthonia.decumbens 0.02564103 0.0
## Daucus.carrota 0.05128205 0.0
## Dicranella.spp. 0.02564103 0.0
## Dicranum.scoparium 0.10256410 0.5
## Epilobium.montanum 0.07692308 0.0
## Equisetum.arvense 0.07692308 0.0
## Equisteum.variegatum 0.02564103 0.0
## Erigeron.acer 0.05128205 0.0
## Euphrasia.agg 0.23076923 1.0
## Festuca.ovina 0.17948718 0.0
## Festuca.rubra 0.38461538 0.0
## Festuca.rubra.agg. 0.02564103 0.0
## Filipendula.ulmaria 0.07692308 0.0
## Fissidens.adianthoides 0.02564103 0.0
## Fissidens.dubius 0.05128205 0.0
## Fissidens.exilis 0.02564103 0.0
## Fragaria.vesca 0.12820513 0.5
## Galium.aparine 0.02564103 0.0
## Galium.arvense 0.02564103 0.0
## Galium.saxatile 0.02564103 0.0
## Galium.verum 0.10256410 0.0
## Geum.urbanum 0.02564103 0.0
## Glechoma.hederacea 0.02564103 0.0
## Helicotrichon.spp. 0.02564103 0.0
## Heracleum.sphondylium 0.07692308 0.0
## Hieracium.spp. 0.02564103 0.0
## Holcus.spp. 0.51282051 0.5
## Holcus.lanatus 0.28205128 0.5
## Holcus.mollis 0.15384615 0.0
## Homalothecium.lutescens 0.05128205 0.0
## Hylocomium.splendens 0.15384615 0.5
## Hypericum.perforatum 0.12820513 0.5
## Hypnum.cupressiforme 0.23076923 0.5
## Hypnum.imponens 0.02564103 0.0
## Hypnum.jutlandicum 0.07692308 0.0
## Hypochaeris.radicata 0.02564103 0.0
## Kindbergia.praelonga 0.15384615 0.0
## Lathyrus.pratensis 0.07692308 0.0
## Leontodon.hispidus 0.12820513 0.0
## Leontodon.saxatilis 0.02564103 0.0
## Leucanthemum.vulgare 0.33333333 0.5
## Linum.catharticum 0.10256410 0.5
## Lolium.perenne 0.10256410 0.0
## Lophocolea.semiteres 0.02564103 0.0
## Lotus.corniculatus 0.43589744 0.5
## Luzula.multiflora 0.02564103 0.0
## Lysimachia.maritima 0.05128205 0.0
## Medicago.lupulina 0.12820513 0.0
## Myosotis.arvensis 0.12820513 0.0
## Ononis.repens 0.20512821 0.0
## Oxalis.acetosella 0.02564103 0.0
## Pastinaca.sativa 0.02564103 0.0
## Pentaglottis.sempervirens 0.02564103 0.0
## Pillosella.officinarum 0.28205128 0.5
## Plantago.coronopus 0.10256410 0.0
## Plantago.lanceolata 0.28205128 1.0
## Pleurozium.schreberi 0.07692308 0.5
## Poa.annua 0.07692308 0.0
## Poa.spp. 0.02564103 0.0
## Polytrichum.commune 0.02564103 0.0
## Polytrichum.commune.agg. 0.02564103 0.0
## Polytrichum.formosum 0.02564103 0.0
## Potentilla.reptans 0.10256410 0.0
## Prunella.vulgaris 0.10256410 0.5
## Pseudoscleropidum.purum 0.17948718 0.5
## Pteridium.aquilinum 0.07692308 0.0
## Ranunculus.acris 0.02564103 0.0
## Ranunculus.repens 0.07692308 0.0
## Reseda.lutea 0.02564103 0.0
## Rhinanthus.minor 0.02564103 0.0
## Rhizomnium.punctatum 0.02564103 0.0
## Rhytidadelphus.squarrosus 0.28205128 1.0
## Rhytidadelphus.triquetris 0.02564103 0.5
## Rubus.fruticosus 0.05128205 0.0
## Sanguisorba.minor.spp.minor 0.05128205 0.0
## Saniona.uncinata 0.05128205 0.0
## Sedum.anglicum 0.02564103 0.0
## Senecio.jacobaea 0.05128205 0.0
## Senecio.vulgaris 0.02564103 0.0
## Sonchus.arvensis 0.02564103 0.0
## Stachys.sylvatica 0.05128205 0.0
## Stellaria.apetala 0.02564103 0.0
## Taraxacum.agg. 0.28205128 0.0
## Thuidium.tamariscinum 0.07692308 0.0
## Thymus.polytrichus 0.17948718 0.5
## Trichostomum.crispulum 0.12820513 0.5
## Trifolium.campestre 0.17948718 0.0
## Trifolium.dubium 0.02564103 0.5
## Trifolium.pratense 0.10256410 0.0
## Trifolium.repens 0.12820513 0.0
## Trisetum.flavescens 0.10256410 0.0
## Tussilago.farfara 0.07692308 0.0
## Urtica.diocia 0.10256410 0.0
## Veronica.officinalis 0.02564103 0.0
## Vicia.sativa 0.02564103 0.0
## Viola.riviniana 0.02564103 0.0
## Weissia.controversa 0.02564103 0.0
## Zygodon.stirtonii 0.02564103 0.0
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.0000000
## Agrostis.canina 1.00000000 0.0000000
## Alchemilla.mollis 1.00000000 0.0000000
## Alopercus.pratensis 1.00000000 0.0000000
## Angelica.sylvestris 1.00000000 0.0000000
## Anthoxanthum.odoratum 0.09717062 0.9028294
## Anthyllis.vulneraria 1.00000000 0.0000000
## Aphanes.arvensis 1.00000000 0.0000000
## Arrhenatherum.elatius 0.76923077 0.2307692
## Atrichum.undulatum 1.00000000 0.0000000
## Avenula.pratensis 1.00000000 0.0000000
## Bellis.perennis 0.77966102 0.2203390
## Betula.pubescens 1.00000000 0.0000000
## Blackstonia.perfoliata 1.00000000 0.0000000
## Brachythecium.albicans 1.00000000 0.0000000
## Brachythecium.glareosum 1.00000000 0.0000000
## Brachythecium.mildeanum 1.00000000 0.0000000
## Brachythecium.rutabulum 1.00000000 0.0000000
## Briza.media 1.00000000 0.0000000
## Bromus.hordeaceus 1.00000000 0.0000000
## Bryum.c.f..caespiticium 1.00000000 0.0000000
## Bryum.c.f..pallescens 0.04878049 0.9512195
## Bryum.capillare 1.00000000 0.0000000
## Bryum.spp. 1.00000000 0.0000000
## Calliergonella.cupsidata 1.00000000 0.0000000
## Calypogeia.arguta 1.00000000 0.0000000
## Campanula.rotundifolia 1.00000000 0.0000000
## Carex.distans 1.00000000 0.0000000
## Carex.flacca 1.00000000 0.0000000
## Carex.panicea 1.00000000 0.0000000
## Carlina.vulgaris 0.12981744 0.8701826
## Centaurea.nigra 1.00000000 0.0000000
## Centaurium.erythraea 1.00000000 0.0000000
## Centaurium.littorale 1.00000000 0.0000000
## Centaurium.pulchellum 1.00000000 0.0000000
## Cerastium.fontanum 0.38095238 0.6190476
## Chamaenerion.angustifolium 1.00000000 0.0000000
## Cirriphyllum.piliferum 1.00000000 0.0000000
## Cirsium.arvense 1.00000000 0.0000000
## Cirsium.palustre 1.00000000 0.0000000
## Crepis.capillaris 0.01265823 0.9873418
## Cynosurus.cristatus 1.00000000 0.0000000
## Dactylis.glomerata 0.80597015 0.1940299
## Dactylorhiza.fuchsii 1.00000000 0.0000000
## Danthonia.decumbens 1.00000000 0.0000000
## Daucus.carrota 1.00000000 0.0000000
## Dicranella.spp. 1.00000000 0.0000000
## Dicranum.scoparium 0.14096916 0.8590308
## Epilobium.montanum 1.00000000 0.0000000
## Equisetum.arvense 1.00000000 0.0000000
## Equisteum.variegatum 1.00000000 0.0000000
## Erigeron.acer 1.00000000 0.0000000
## Euphrasia.agg 0.21587302 0.7841270
## Festuca.ovina 1.00000000 0.0000000
## Festuca.rubra 1.00000000 0.0000000
## Festuca.rubra.agg. 1.00000000 0.0000000
## Filipendula.ulmaria 1.00000000 0.0000000
## Fissidens.adianthoides 1.00000000 0.0000000
## Fissidens.dubius 1.00000000 0.0000000
## Fissidens.exilis 1.00000000 0.0000000
## Fragaria.vesca 0.18623482 0.8137652
## Galium.aparine 1.00000000 0.0000000
## Galium.arvense 1.00000000 0.0000000
## Galium.saxatile 1.00000000 0.0000000
## Galium.verum 1.00000000 0.0000000
## Geum.urbanum 1.00000000 0.0000000
## Glechoma.hederacea 1.00000000 0.0000000
## Helicotrichon.spp. 1.00000000 0.0000000
## Heracleum.sphondylium 1.00000000 0.0000000
## Hieracium.spp. 1.00000000 0.0000000
## Holcus.spp. 0.50030506 0.4996949
## Holcus.lanatus 0.26507538 0.7349246
## Holcus.mollis 1.00000000 0.0000000
## Homalothecium.lutescens 1.00000000 0.0000000
## Hylocomium.splendens 0.35258964 0.6474104
## Hypericum.perforatum 0.19813084 0.8018692
## Hypnum.cupressiforme 0.31578947 0.6842105
## Hypnum.imponens 1.00000000 0.0000000
## Hypnum.jutlandicum 1.00000000 0.0000000
## Hypochaeris.radicata 1.00000000 0.0000000
## Kindbergia.praelonga 1.00000000 0.0000000
## Lathyrus.pratensis 1.00000000 0.0000000
## Leontodon.hispidus 1.00000000 0.0000000
## Leontodon.saxatilis 1.00000000 0.0000000
## Leucanthemum.vulgare 0.16666667 0.8333333
## Linum.catharticum 0.13333333 0.8666667
## Lolium.perenne 1.00000000 0.0000000
## Lophocolea.semiteres 1.00000000 0.0000000
## Lotus.corniculatus 0.41128856 0.5887114
## Luzula.multiflora 1.00000000 0.0000000
## Lysimachia.maritima 1.00000000 0.0000000
## Medicago.lupulina 1.00000000 0.0000000
## Myosotis.arvensis 1.00000000 0.0000000
## Ononis.repens 1.00000000 0.0000000
## Oxalis.acetosella 1.00000000 0.0000000
## Pastinaca.sativa 1.00000000 0.0000000
## Pentaglottis.sempervirens 1.00000000 0.0000000
## Pillosella.officinarum 0.44597503 0.5540250
## Plantago.coronopus 1.00000000 0.0000000
## Plantago.lanceolata 0.32425743 0.6757426
## Pleurozium.schreberi 0.08137045 0.9186296
## Poa.annua 1.00000000 0.0000000
## Poa.spp. 1.00000000 0.0000000
## Polytrichum.commune 1.00000000 0.0000000
## Polytrichum.commune.agg. 1.00000000 0.0000000
## Polytrichum.formosum 1.00000000 0.0000000
## Potentilla.reptans 1.00000000 0.0000000
## Prunella.vulgaris 0.36065574 0.6393443
## Pseudoscleropidum.purum 0.43884892 0.5611511
## Pteridium.aquilinum 1.00000000 0.0000000
## Ranunculus.acris 1.00000000 0.0000000
## Ranunculus.repens 1.00000000 0.0000000
## Reseda.lutea 1.00000000 0.0000000
## Rhinanthus.minor 1.00000000 0.0000000
## Rhizomnium.punctatum 1.00000000 0.0000000
## Rhytidadelphus.squarrosus 0.19512195 0.8048780
## Rhytidadelphus.triquetris 0.04878049 0.9512195
## Rubus.fruticosus 1.00000000 0.0000000
## Sanguisorba.minor.spp.minor 1.00000000 0.0000000
## Saniona.uncinata 1.00000000 0.0000000
## Sedum.anglicum 1.00000000 0.0000000
## Senecio.jacobaea 1.00000000 0.0000000
## Senecio.vulgaris 1.00000000 0.0000000
## Sonchus.arvensis 1.00000000 0.0000000
## Stachys.sylvatica 1.00000000 0.0000000
## Stellaria.apetala 1.00000000 0.0000000
## Taraxacum.agg. 1.00000000 0.0000000
## Thuidium.tamariscinum 1.00000000 0.0000000
## Thymus.polytrichus 0.11356518 0.8864348
## Trichostomum.crispulum 0.26415094 0.7358491
## Trifolium.campestre 1.00000000 0.0000000
## Trifolium.dubium 0.03600854 0.9639915
## Trifolium.pratense 1.00000000 0.0000000
## Trifolium.repens 1.00000000 0.0000000
## Trisetum.flavescens 1.00000000 0.0000000
## Tussilago.farfara 1.00000000 0.0000000
## Urtica.diocia 1.00000000 0.0000000
## Veronica.officinalis 1.00000000 0.0000000
## Vicia.sativa 1.00000000 0.0000000
## Viola.riviniana 1.00000000 0.0000000
## Weissia.controversa 1.00000000 0.0000000
## Zygodon.stirtonii 1.00000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.2051282051 0.00000000
## Agrostis.canina 0.0256410256 0.00000000
## Alchemilla.mollis 0.0256410256 0.00000000
## Alopercus.pratensis 0.0256410256 0.00000000
## Angelica.sylvestris 0.0512820513 0.00000000
## Anthoxanthum.odoratum 0.0124577718 0.45141469
## Anthyllis.vulneraria 0.1282051282 0.00000000
## Aphanes.arvensis 0.0769230769 0.00000000
## Arrhenatherum.elatius 0.1380670611 0.11538462
## Atrichum.undulatum 0.0512820513 0.00000000
## Avenula.pratensis 0.0256410256 0.00000000
## Bellis.perennis 0.2199043894 0.11016949
## Betula.pubescens 0.0256410256 0.00000000
## Blackstonia.perfoliata 0.0256410256 0.00000000
## Brachythecium.albicans 0.0256410256 0.00000000
## Brachythecium.glareosum 0.0256410256 0.00000000
## Brachythecium.mildeanum 0.1025641026 0.00000000
## Brachythecium.rutabulum 0.1538461538 0.00000000
## Briza.media 0.0769230769 0.00000000
## Bromus.hordeaceus 0.0256410256 0.00000000
## Bryum.c.f..caespiticium 0.0256410256 0.00000000
## Bryum.c.f..pallescens 0.0025015635 0.47560976
## Bryum.capillare 0.0256410256 0.00000000
## Bryum.spp. 0.0769230769 0.00000000
## Calliergonella.cupsidata 0.3846153846 0.00000000
## Calypogeia.arguta 0.2051282051 0.00000000
## Campanula.rotundifolia 0.0256410256 0.00000000
## Carex.distans 0.0512820513 0.00000000
## Carex.flacca 0.1794871795 0.00000000
## Carex.panicea 0.0256410256 0.00000000
## Carlina.vulgaris 0.0299578717 0.43509128
## Centaurea.nigra 0.0512820513 0.00000000
## Centaurium.erythraea 0.0512820513 0.00000000
## Centaurium.littorale 0.1025641026 0.00000000
## Centaurium.pulchellum 0.0256410256 0.00000000
## Cerastium.fontanum 0.0586080586 0.30952381
## Chamaenerion.angustifolium 0.0256410256 0.00000000
## Cirriphyllum.piliferum 0.0256410256 0.00000000
## Cirsium.arvense 0.0769230769 0.00000000
## Cirsium.palustre 0.0512820513 0.00000000
## Crepis.capillaris 0.0003245699 0.49367089
## Cynosurus.cristatus 0.0769230769 0.00000000
## Dactylis.glomerata 0.1033295063 0.09701493
## Dactylorhiza.fuchsii 0.0512820513 0.00000000
## Danthonia.decumbens 0.0256410256 0.00000000
## Daucus.carrota 0.0512820513 0.00000000
## Dicranella.spp. 0.0256410256 0.00000000
## Dicranum.scoparium 0.0144583757 0.42951542
## Epilobium.montanum 0.0769230769 0.00000000
## Equisetum.arvense 0.0769230769 0.00000000
## Equisteum.variegatum 0.0256410256 0.00000000
## Erigeron.acer 0.0512820513 0.00000000
## Euphrasia.agg 0.0498168498 0.78412698
## Festuca.ovina 0.1794871795 0.00000000
## Festuca.rubra 0.3846153846 0.00000000
## Festuca.rubra.agg. 0.0256410256 0.00000000
## Filipendula.ulmaria 0.0769230769 0.00000000
## Fissidens.adianthoides 0.0256410256 0.00000000
## Fissidens.dubius 0.0512820513 0.00000000
## Fissidens.exilis 0.0256410256 0.00000000
## Fragaria.vesca 0.0238762587 0.40688259
## Galium.aparine 0.0256410256 0.00000000
## Galium.arvense 0.0256410256 0.00000000
## Galium.saxatile 0.0256410256 0.00000000
## Galium.verum 0.1025641026 0.00000000
## Geum.urbanum 0.0256410256 0.00000000
## Glechoma.hederacea 0.0256410256 0.00000000
## Helicotrichon.spp. 0.0256410256 0.00000000
## Heracleum.sphondylium 0.0769230769 0.00000000
## Hieracium.spp. 0.0256410256 0.00000000
## Holcus.spp. 0.2565666995 0.24984747
## Holcus.lanatus 0.0747648499 0.36746231
## Holcus.mollis 0.1538461538 0.00000000
## Homalothecium.lutescens 0.0512820513 0.00000000
## Hylocomium.splendens 0.0542445602 0.32370518
## Hypericum.perforatum 0.0254013899 0.40093458
## Hypnum.cupressiforme 0.0728744939 0.34210526
## Hypnum.imponens 0.0256410256 0.00000000
## Hypnum.jutlandicum 0.0769230769 0.00000000
## Hypochaeris.radicata 0.0256410256 0.00000000
## Kindbergia.praelonga 0.1538461538 0.00000000
## Lathyrus.pratensis 0.0769230769 0.00000000
## Leontodon.hispidus 0.1282051282 0.00000000
## Leontodon.saxatilis 0.0256410256 0.00000000
## Leucanthemum.vulgare 0.0555555556 0.41666667
## Linum.catharticum 0.0136752137 0.43333333
## Lolium.perenne 0.1025641026 0.00000000
## Lophocolea.semiteres 0.0256410256 0.00000000
## Lotus.corniculatus 0.1792796280 0.29435572
## Luzula.multiflora 0.0256410256 0.00000000
## Lysimachia.maritima 0.0512820513 0.00000000
## Medicago.lupulina 0.1282051282 0.00000000
## Myosotis.arvensis 0.1282051282 0.00000000
## Ononis.repens 0.2051282051 0.00000000
## Oxalis.acetosella 0.0256410256 0.00000000
## Pastinaca.sativa 0.0256410256 0.00000000
## Pentaglottis.sempervirens 0.0256410256 0.00000000
## Pillosella.officinarum 0.1257878296 0.27701248
## Plantago.coronopus 0.1025641026 0.00000000
## Plantago.lanceolata 0.0914572226 0.67574257
## Pleurozium.schreberi 0.0062592654 0.45931478
## Poa.annua 0.0769230769 0.00000000
## Poa.spp. 0.0256410256 0.00000000
## Polytrichum.commune 0.0256410256 0.00000000
## Polytrichum.commune.agg. 0.0256410256 0.00000000
## Polytrichum.formosum 0.0256410256 0.00000000
## Potentilla.reptans 0.1025641026 0.00000000
## Prunella.vulgaris 0.0369903321 0.31967213
## Pseudoscleropidum.purum 0.0787677550 0.28057554
## Pteridium.aquilinum 0.0769230769 0.00000000
## Ranunculus.acris 0.0256410256 0.00000000
## Ranunculus.repens 0.0769230769 0.00000000
## Reseda.lutea 0.0256410256 0.00000000
## Rhinanthus.minor 0.0256410256 0.00000000
## Rhizomnium.punctatum 0.0256410256 0.00000000
## Rhytidadelphus.squarrosus 0.0550343965 0.80487805
## Rhytidadelphus.triquetris 0.0012507817 0.47560976
## Rubus.fruticosus 0.0512820513 0.00000000
## Sanguisorba.minor.spp.minor 0.0512820513 0.00000000
## Saniona.uncinata 0.0512820513 0.00000000
## Sedum.anglicum 0.0256410256 0.00000000
## Senecio.jacobaea 0.0512820513 0.00000000
## Senecio.vulgaris 0.0256410256 0.00000000
## Sonchus.arvensis 0.0256410256 0.00000000
## Stachys.sylvatica 0.0512820513 0.00000000
## Stellaria.apetala 0.0256410256 0.00000000
## Taraxacum.agg. 0.2820512821 0.00000000
## Thuidium.tamariscinum 0.0769230769 0.00000000
## Thymus.polytrichus 0.0203834930 0.44321741
## Trichostomum.crispulum 0.0338655056 0.36792453
## Trifolium.campestre 0.1794871795 0.00000000
## Trifolium.dubium 0.0009232960 0.48199573
## Trifolium.pratense 0.1025641026 0.00000000
## Trifolium.repens 0.1282051282 0.00000000
## Trisetum.flavescens 0.1025641026 0.00000000
## Tussilago.farfara 0.0769230769 0.00000000
## Urtica.diocia 0.1025641026 0.00000000
## Veronica.officinalis 0.0256410256 0.00000000
## Vicia.sativa 0.0256410256 0.00000000
## Viola.riviniana 0.0256410256 0.00000000
## Weissia.controversa 0.0256410256 0.00000000
## Zygodon.stirtonii 0.0256410256 0.00000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 2
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 2
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 2 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 2 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 2
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 2 1
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 2 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 2
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 2 2
## Hypnum.cupressiforme Hypnum.imponens
## 2 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 2 2
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 2 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 2
## Plantago.coronopus Plantago.lanceolata
## 1 2
## Pleurozium.schreberi Poa.annua
## 2 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 2
## Pseudoscleropidum.purum Pteridium.aquilinum
## 2 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 2
## Rhytidadelphus.triquetris Rubus.fruticosus
## 2 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 2 2
## Trifolium.campestre Trifolium.dubium
## 1 2
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.20512821 0.02564103
## Alchemilla.mollis Alopercus.pratensis
## 0.02564103 0.02564103
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.05128205 0.45141469
## Anthyllis.vulneraria Aphanes.arvensis
## 0.12820513 0.07692308
## Arrhenatherum.elatius Atrichum.undulatum
## 0.13806706 0.05128205
## Avenula.pratensis Bellis.perennis
## 0.02564103 0.21990439
## Betula.pubescens Blackstonia.perfoliata
## 0.02564103 0.02564103
## Brachythecium.albicans Brachythecium.glareosum
## 0.02564103 0.02564103
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.10256410 0.15384615
## Briza.media Bromus.hordeaceus
## 0.07692308 0.02564103
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.02564103 0.47560976
## Bryum.capillare Bryum.spp.
## 0.02564103 0.07692308
## Calliergonella.cupsidata Calypogeia.arguta
## 0.38461538 0.20512821
## Campanula.rotundifolia Carex.distans
## 0.02564103 0.05128205
## Carex.flacca Carex.panicea
## 0.17948718 0.02564103
## Carlina.vulgaris Centaurea.nigra
## 0.43509128 0.05128205
## Centaurium.erythraea Centaurium.littorale
## 0.05128205 0.10256410
## Centaurium.pulchellum Cerastium.fontanum
## 0.02564103 0.30952381
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.02564103 0.02564103
## Cirsium.arvense Cirsium.palustre
## 0.07692308 0.05128205
## Crepis.capillaris Cynosurus.cristatus
## 0.49367089 0.07692308
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.10332951 0.05128205
## Danthonia.decumbens Daucus.carrota
## 0.02564103 0.05128205
## Dicranella.spp. Dicranum.scoparium
## 0.02564103 0.42951542
## Epilobium.montanum Equisetum.arvense
## 0.07692308 0.07692308
## Equisteum.variegatum Erigeron.acer
## 0.02564103 0.05128205
## Euphrasia.agg Festuca.ovina
## 0.78412698 0.17948718
## Festuca.rubra Festuca.rubra.agg.
## 0.38461538 0.02564103
## Filipendula.ulmaria Fissidens.adianthoides
## 0.07692308 0.02564103
## Fissidens.dubius Fissidens.exilis
## 0.05128205 0.02564103
## Fragaria.vesca Galium.aparine
## 0.40688259 0.02564103
## Galium.arvense Galium.saxatile
## 0.02564103 0.02564103
## Galium.verum Geum.urbanum
## 0.10256410 0.02564103
## Glechoma.hederacea Helicotrichon.spp.
## 0.02564103 0.02564103
## Heracleum.sphondylium Hieracium.spp.
## 0.07692308 0.02564103
## Holcus.spp. Holcus.lanatus
## 0.25656670 0.36746231
## Holcus.mollis Homalothecium.lutescens
## 0.15384615 0.05128205
## Hylocomium.splendens Hypericum.perforatum
## 0.32370518 0.40093458
## Hypnum.cupressiforme Hypnum.imponens
## 0.34210526 0.02564103
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.07692308 0.02564103
## Kindbergia.praelonga Lathyrus.pratensis
## 0.15384615 0.07692308
## Leontodon.hispidus Leontodon.saxatilis
## 0.12820513 0.02564103
## Leucanthemum.vulgare Linum.catharticum
## 0.41666667 0.43333333
## Lolium.perenne Lophocolea.semiteres
## 0.10256410 0.02564103
## Lotus.corniculatus Luzula.multiflora
## 0.29435572 0.02564103
## Lysimachia.maritima Medicago.lupulina
## 0.05128205 0.12820513
## Myosotis.arvensis Ononis.repens
## 0.12820513 0.20512821
## Oxalis.acetosella Pastinaca.sativa
## 0.02564103 0.02564103
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.02564103 0.27701248
## Plantago.coronopus Plantago.lanceolata
## 0.10256410 0.67574257
## Pleurozium.schreberi Poa.annua
## 0.45931478 0.07692308
## Poa.spp. Polytrichum.commune
## 0.02564103 0.02564103
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.02564103 0.02564103
## Potentilla.reptans Prunella.vulgaris
## 0.10256410 0.31967213
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.28057554 0.07692308
## Ranunculus.acris Ranunculus.repens
## 0.02564103 0.07692308
## Reseda.lutea Rhinanthus.minor
## 0.02564103 0.02564103
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.02564103 0.80487805
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.47560976 0.05128205
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.05128205 0.05128205
## Sedum.anglicum Senecio.jacobaea
## 0.02564103 0.05128205
## Senecio.vulgaris Sonchus.arvensis
## 0.02564103 0.02564103
## Stachys.sylvatica Stellaria.apetala
## 0.05128205 0.02564103
## Taraxacum.agg. Thuidium.tamariscinum
## 0.28205128 0.07692308
## Thymus.polytrichus Trichostomum.crispulum
## 0.44321741 0.36792453
## Trifolium.campestre Trifolium.dubium
## 0.17948718 0.48199573
## Trifolium.pratense Trifolium.repens
## 0.10256410 0.12820513
## Trisetum.flavescens Tussilago.farfara
## 0.10256410 0.07692308
## Urtica.diocia Veronica.officinalis
## 0.10256410 0.02564103
## Vicia.sativa Viola.riviniana
## 0.02564103 0.02564103
## Weissia.controversa Zygodon.stirtonii
## 0.02564103 0.02564103
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.880 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 0.100
## Anthyllis.vulneraria Aphanes.arvensis
## 0.959 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 1.000 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.970
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 0.051
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.574 0.963
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.866 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.074 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.309
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 0.057 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 0.115
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.037 0.908
## Festuca.rubra Festuca.rubra.agg.
## 0.519 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 0.169 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 0.916 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 1.000 0.203
## Holcus.mollis Homalothecium.lutescens
## 0.918 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.289 0.140
## Hypnum.cupressiforme Hypnum.imponens
## 0.242 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.169 0.151
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.903 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.809
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.739
## Plantago.coronopus Plantago.lanceolata
## 0.949 0.053
## Pleurozium.schreberi Poa.annua
## 0.106 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 0.242
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.242 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.039
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.088 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.834 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.052 0.243
## Trifolium.campestre Trifolium.dubium
## 0.921 0.043
## Trifolium.pratense Trifolium.repens
## 1.000 1.000
## Trisetum.flavescens Tussilago.farfara
## 0.923 1.000
## Urtica.diocia Veronica.officinalis
## 0.955 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#For biotite, Rhytidiadelphus squarrosus has a high indval value of 0.8048 and a low p value #of 0.039. This is the indicator species for biotite.
clustBirnessite <-cut(PlantChemistry1$Birnessite, 5, labels=FALSE)
BirnessiteIndval <- indval(as.matrix(PlantSpecies1), clustBirnessite, type= "long")
gr <- BirnessiteIndval$maxcls[BirnessiteIndval$pval<=0.05]
iv <- BirnessiteIndval$indcls[BirnessiteIndval$pval<=0.05]
pv <- BirnessiteIndval$pval[BirnessiteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[BirnessiteIndval$pval<=0.05]
BirnessiteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
BirnessiteIndvalsummary <- BirnessiteIndvalsummary[order(BirnessiteIndvalsummary$group,
-BirnessiteIndvalsummary$indval),]
print(BirnessiteIndvalsummary)
## group indval pvalue freq
## Betula.pubescens 2 1.0000000 0.019 1
## Bryum.c.f..caespiticium 2 1.0000000 0.031 3
## Cirriphyllum.piliferum 2 1.0000000 0.030 3
## Fissidens.adianthoides 2 1.0000000 0.019 2
## Lophocolea.semiteres 2 1.0000000 0.023 18
## Veronica.officinalis 2 1.0000000 0.024 1
## Weissia.controversa 2 1.0000000 0.020 1
## Rubus.fruticosus 2 0.9302326 0.043 2
## Hylocomium.splendens 2 0.9033053 0.045 6
summary(indval(as.matrix(PlantSpecies1), clustBirnessite))
## cluster indicator_value probability
## Betula.pubescens 2 1.0000 0.022
## Bryum.c.f..caespiticium 2 1.0000 0.027
## Cirriphyllum.piliferum 2 1.0000 0.026
## Fissidens.adianthoides 2 1.0000 0.024
## Lophocolea.semiteres 2 1.0000 0.030
## Veronica.officinalis 2 1.0000 0.023
## Weissia.controversa 2 1.0000 0.032
## Fissidens.dubius 2 0.9524 0.046
##
## Sum of probabilities = 121.143
##
## Sum of Indicator Values = 28.72
##
## Sum of Significant Indicator Values = 7.95
##
## Number of Significant Indicators = 8
##
## Significant Indicator Distribution
##
## 2
## 8
print(indval(as.matrix(PlantSpecies1), clustBirnessite))
## $relfrq
## 1 5
## Agrostis.spp. 0.175 1
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.025 0
## Alopercus.pratensis 0.025 0
## Angelica.sylvestris 0.050 0
## Anthoxanthum.odoratum 0.125 1
## Anthyllis.vulneraria 0.125 0
## Aphanes.arvensis 0.075 0
## Arrhenatherum.elatius 0.200 0
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.025 0
## Bellis.perennis 0.275 1
## Betula.pubescens 0.000 1
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.100 0
## Brachythecium.rutabulum 0.150 0
## Briza.media 0.075 0
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.000 1
## Bryum.c.f..pallescens 0.050 1
## Bryum.capillare 0.025 0
## Bryum.spp. 0.075 0
## Calliergonella.cupsidata 0.350 1
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.025 0
## Carex.distans 0.050 0
## Carex.flacca 0.175 0
## Carex.panicea 0.025 0
## Carlina.vulgaris 0.250 0
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.100 0
## Centaurium.pulchellum 0.025 0
## Cerastium.fontanum 0.175 0
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.000 1
## Cirsium.arvense 0.075 0
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.050 0
## Cynosurus.cristatus 0.075 0
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.050 0
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.125 0
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.075 0
## Equisteum.variegatum 0.025 0
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.250 1
## Festuca.ovina 0.175 0
## Festuca.rubra 0.375 0
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.075 0
## Fissidens.adianthoides 0.000 1
## Fissidens.dubius 0.025 1
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.125 1
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.100 0
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.025 0
## Holcus.spp. 0.525 0
## Holcus.lanatus 0.300 0
## Holcus.mollis 0.150 0
## Homalothecium.lutescens 0.050 0
## Hylocomium.splendens 0.150 1
## Hypericum.perforatum 0.125 1
## Hypnum.cupressiforme 0.225 1
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.025 0
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.075 0
## Leontodon.hispidus 0.125 0
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.350 0
## Linum.catharticum 0.125 0
## Lolium.perenne 0.100 0
## Lophocolea.semiteres 0.000 1
## Lotus.corniculatus 0.425 1
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.050 0
## Medicago.lupulina 0.125 0
## Myosotis.arvensis 0.125 0
## Ononis.repens 0.200 0
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.300 0
## Plantago.coronopus 0.100 0
## Plantago.lanceolata 0.325 0
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.075 0
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.100 0
## Prunella.vulgaris 0.100 1
## Pseudoscleropidum.purum 0.175 1
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.075 0
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.300 1
## Rhytidadelphus.triquetris 0.050 0
## Rubus.fruticosus 0.025 1
## Sanguisorba.minor.spp.minor 0.050 0
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.050 0
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.050 0
## Stellaria.apetala 0.025 0
## Taraxacum.agg. 0.275 0
## Thuidium.tamariscinum 0.075 0
## Thymus.polytrichus 0.200 0
## Trichostomum.crispulum 0.150 0
## Trifolium.campestre 0.175 0
## Trifolium.dubium 0.050 0
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.125 0
## Trisetum.flavescens 0.100 0
## Tussilago.farfara 0.075 0
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.000 1
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.000 1
## Zygodon.stirtonii 0.025 0
##
## $relabu
## 1 5
## Agrostis.spp. 0.72027972 0.2797203
## Agrostis.canina 1.00000000 0.0000000
## Alchemilla.mollis 1.00000000 0.0000000
## Alopercus.pratensis 1.00000000 0.0000000
## Angelica.sylvestris 1.00000000 0.0000000
## Anthoxanthum.odoratum 0.43161634 0.5683837
## Anthyllis.vulneraria 1.00000000 0.0000000
## Aphanes.arvensis 1.00000000 0.0000000
## Arrhenatherum.elatius 1.00000000 0.0000000
## Atrichum.undulatum 1.00000000 0.0000000
## Avenula.pratensis 1.00000000 0.0000000
## Bellis.perennis 0.16230366 0.8376963
## Betula.pubescens 0.00000000 1.0000000
## Blackstonia.perfoliata 1.00000000 0.0000000
## Brachythecium.albicans 1.00000000 0.0000000
## Brachythecium.glareosum 1.00000000 0.0000000
## Brachythecium.mildeanum 1.00000000 0.0000000
## Brachythecium.rutabulum 1.00000000 0.0000000
## Briza.media 1.00000000 0.0000000
## Bromus.hordeaceus 1.00000000 0.0000000
## Bryum.c.f..caespiticium 0.00000000 1.0000000
## Bryum.c.f..pallescens 0.21568627 0.7843137
## Bryum.capillare 1.00000000 0.0000000
## Bryum.spp. 1.00000000 0.0000000
## Calliergonella.cupsidata 0.68992248 0.3100775
## Calypogeia.arguta 1.00000000 0.0000000
## Campanula.rotundifolia 1.00000000 0.0000000
## Carex.distans 1.00000000 0.0000000
## Carex.flacca 1.00000000 0.0000000
## Carex.panicea 1.00000000 0.0000000
## Carlina.vulgaris 1.00000000 0.0000000
## Centaurea.nigra 1.00000000 0.0000000
## Centaurium.erythraea 1.00000000 0.0000000
## Centaurium.littorale 1.00000000 0.0000000
## Centaurium.pulchellum 1.00000000 0.0000000
## Cerastium.fontanum 1.00000000 0.0000000
## Chamaenerion.angustifolium 1.00000000 0.0000000
## Cirriphyllum.piliferum 0.00000000 1.0000000
## Cirsium.arvense 1.00000000 0.0000000
## Cirsium.palustre 1.00000000 0.0000000
## Crepis.capillaris 1.00000000 0.0000000
## Cynosurus.cristatus 1.00000000 0.0000000
## Dactylis.glomerata 1.00000000 0.0000000
## Dactylorhiza.fuchsii 1.00000000 0.0000000
## Danthonia.decumbens 1.00000000 0.0000000
## Daucus.carrota 1.00000000 0.0000000
## Dicranella.spp. 1.00000000 0.0000000
## Dicranum.scoparium 1.00000000 0.0000000
## Epilobium.montanum 1.00000000 0.0000000
## Equisetum.arvense 1.00000000 0.0000000
## Equisteum.variegatum 1.00000000 0.0000000
## Erigeron.acer 1.00000000 0.0000000
## Euphrasia.agg 0.32394366 0.6760563
## Festuca.ovina 1.00000000 0.0000000
## Festuca.rubra 1.00000000 0.0000000
## Festuca.rubra.agg. 1.00000000 0.0000000
## Filipendula.ulmaria 1.00000000 0.0000000
## Fissidens.adianthoides 0.00000000 1.0000000
## Fissidens.dubius 0.04761905 0.9523810
## Fissidens.exilis 1.00000000 0.0000000
## Fragaria.vesca 0.10375733 0.8962427
## Galium.aparine 1.00000000 0.0000000
## Galium.arvense 1.00000000 0.0000000
## Galium.saxatile 1.00000000 0.0000000
## Galium.verum 1.00000000 0.0000000
## Geum.urbanum 1.00000000 0.0000000
## Glechoma.hederacea 1.00000000 0.0000000
## Helicotrichon.spp. 1.00000000 0.0000000
## Heracleum.sphondylium 1.00000000 0.0000000
## Hieracium.spp. 1.00000000 0.0000000
## Holcus.spp. 1.00000000 0.0000000
## Holcus.lanatus 1.00000000 0.0000000
## Holcus.mollis 1.00000000 0.0000000
## Homalothecium.lutescens 1.00000000 0.0000000
## Hylocomium.splendens 0.09669472 0.9033053
## Hypericum.perforatum 0.43661972 0.5633803
## Hypnum.cupressiforme 0.18367347 0.8163265
## Hypnum.imponens 1.00000000 0.0000000
## Hypnum.jutlandicum 1.00000000 0.0000000
## Hypochaeris.radicata 1.00000000 0.0000000
## Kindbergia.praelonga 1.00000000 0.0000000
## Lathyrus.pratensis 1.00000000 0.0000000
## Leontodon.hispidus 1.00000000 0.0000000
## Leontodon.saxatilis 1.00000000 0.0000000
## Leucanthemum.vulgare 1.00000000 0.0000000
## Linum.catharticum 1.00000000 0.0000000
## Lolium.perenne 1.00000000 0.0000000
## Lophocolea.semiteres 0.00000000 1.0000000
## Lotus.corniculatus 0.19947792 0.8005221
## Luzula.multiflora 1.00000000 0.0000000
## Lysimachia.maritima 1.00000000 0.0000000
## Medicago.lupulina 1.00000000 0.0000000
## Myosotis.arvensis 1.00000000 0.0000000
## Ononis.repens 1.00000000 0.0000000
## Oxalis.acetosella 1.00000000 0.0000000
## Pastinaca.sativa 1.00000000 0.0000000
## Pentaglottis.sempervirens 1.00000000 0.0000000
## Pillosella.officinarum 1.00000000 0.0000000
## Plantago.coronopus 1.00000000 0.0000000
## Plantago.lanceolata 1.00000000 0.0000000
## Pleurozium.schreberi 1.00000000 0.0000000
## Poa.annua 1.00000000 0.0000000
## Poa.spp. 1.00000000 0.0000000
## Polytrichum.commune 1.00000000 0.0000000
## Polytrichum.commune.agg. 1.00000000 0.0000000
## Polytrichum.formosum 1.00000000 0.0000000
## Potentilla.reptans 1.00000000 0.0000000
## Prunella.vulgaris 0.11111111 0.8888889
## Pseudoscleropidum.purum 0.07692308 0.9230769
## Pteridium.aquilinum 1.00000000 0.0000000
## Ranunculus.acris 1.00000000 0.0000000
## Ranunculus.repens 1.00000000 0.0000000
## Reseda.lutea 1.00000000 0.0000000
## Rhinanthus.minor 1.00000000 0.0000000
## Rhizomnium.punctatum 1.00000000 0.0000000
## Rhytidadelphus.squarrosus 0.50617284 0.4938272
## Rhytidadelphus.triquetris 1.00000000 0.0000000
## Rubus.fruticosus 0.06976744 0.9302326
## Sanguisorba.minor.spp.minor 1.00000000 0.0000000
## Saniona.uncinata 1.00000000 0.0000000
## Sedum.anglicum 1.00000000 0.0000000
## Senecio.jacobaea 1.00000000 0.0000000
## Senecio.vulgaris 1.00000000 0.0000000
## Sonchus.arvensis 1.00000000 0.0000000
## Stachys.sylvatica 1.00000000 0.0000000
## Stellaria.apetala 1.00000000 0.0000000
## Taraxacum.agg. 1.00000000 0.0000000
## Thuidium.tamariscinum 1.00000000 0.0000000
## Thymus.polytrichus 1.00000000 0.0000000
## Trichostomum.crispulum 1.00000000 0.0000000
## Trifolium.campestre 1.00000000 0.0000000
## Trifolium.dubium 1.00000000 0.0000000
## Trifolium.pratense 1.00000000 0.0000000
## Trifolium.repens 1.00000000 0.0000000
## Trisetum.flavescens 1.00000000 0.0000000
## Tussilago.farfara 1.00000000 0.0000000
## Urtica.diocia 1.00000000 0.0000000
## Veronica.officinalis 0.00000000 1.0000000
## Vicia.sativa 1.00000000 0.0000000
## Viola.riviniana 1.00000000 0.0000000
## Weissia.controversa 0.00000000 1.0000000
## Zygodon.stirtonii 1.00000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.126048951 0.2797203
## Agrostis.canina 0.025000000 0.0000000
## Alchemilla.mollis 0.025000000 0.0000000
## Alopercus.pratensis 0.025000000 0.0000000
## Angelica.sylvestris 0.050000000 0.0000000
## Anthoxanthum.odoratum 0.053952043 0.5683837
## Anthyllis.vulneraria 0.125000000 0.0000000
## Aphanes.arvensis 0.075000000 0.0000000
## Arrhenatherum.elatius 0.200000000 0.0000000
## Atrichum.undulatum 0.050000000 0.0000000
## Avenula.pratensis 0.025000000 0.0000000
## Bellis.perennis 0.044633508 0.8376963
## Betula.pubescens 0.000000000 1.0000000
## Blackstonia.perfoliata 0.025000000 0.0000000
## Brachythecium.albicans 0.025000000 0.0000000
## Brachythecium.glareosum 0.025000000 0.0000000
## Brachythecium.mildeanum 0.100000000 0.0000000
## Brachythecium.rutabulum 0.150000000 0.0000000
## Briza.media 0.075000000 0.0000000
## Bromus.hordeaceus 0.025000000 0.0000000
## Bryum.c.f..caespiticium 0.000000000 1.0000000
## Bryum.c.f..pallescens 0.010784314 0.7843137
## Bryum.capillare 0.025000000 0.0000000
## Bryum.spp. 0.075000000 0.0000000
## Calliergonella.cupsidata 0.241472868 0.3100775
## Calypogeia.arguta 0.200000000 0.0000000
## Campanula.rotundifolia 0.025000000 0.0000000
## Carex.distans 0.050000000 0.0000000
## Carex.flacca 0.175000000 0.0000000
## Carex.panicea 0.025000000 0.0000000
## Carlina.vulgaris 0.250000000 0.0000000
## Centaurea.nigra 0.050000000 0.0000000
## Centaurium.erythraea 0.050000000 0.0000000
## Centaurium.littorale 0.100000000 0.0000000
## Centaurium.pulchellum 0.025000000 0.0000000
## Cerastium.fontanum 0.175000000 0.0000000
## Chamaenerion.angustifolium 0.025000000 0.0000000
## Cirriphyllum.piliferum 0.000000000 1.0000000
## Cirsium.arvense 0.075000000 0.0000000
## Cirsium.palustre 0.050000000 0.0000000
## Crepis.capillaris 0.050000000 0.0000000
## Cynosurus.cristatus 0.075000000 0.0000000
## Dactylis.glomerata 0.150000000 0.0000000
## Dactylorhiza.fuchsii 0.050000000 0.0000000
## Danthonia.decumbens 0.025000000 0.0000000
## Daucus.carrota 0.050000000 0.0000000
## Dicranella.spp. 0.025000000 0.0000000
## Dicranum.scoparium 0.125000000 0.0000000
## Epilobium.montanum 0.075000000 0.0000000
## Equisetum.arvense 0.075000000 0.0000000
## Equisteum.variegatum 0.025000000 0.0000000
## Erigeron.acer 0.050000000 0.0000000
## Euphrasia.agg 0.080985915 0.6760563
## Festuca.ovina 0.175000000 0.0000000
## Festuca.rubra 0.375000000 0.0000000
## Festuca.rubra.agg. 0.025000000 0.0000000
## Filipendula.ulmaria 0.075000000 0.0000000
## Fissidens.adianthoides 0.000000000 1.0000000
## Fissidens.dubius 0.001190476 0.9523810
## Fissidens.exilis 0.025000000 0.0000000
## Fragaria.vesca 0.012969666 0.8962427
## Galium.aparine 0.025000000 0.0000000
## Galium.arvense 0.025000000 0.0000000
## Galium.saxatile 0.025000000 0.0000000
## Galium.verum 0.100000000 0.0000000
## Geum.urbanum 0.025000000 0.0000000
## Glechoma.hederacea 0.025000000 0.0000000
## Helicotrichon.spp. 0.025000000 0.0000000
## Heracleum.sphondylium 0.075000000 0.0000000
## Hieracium.spp. 0.025000000 0.0000000
## Holcus.spp. 0.525000000 0.0000000
## Holcus.lanatus 0.300000000 0.0000000
## Holcus.mollis 0.150000000 0.0000000
## Homalothecium.lutescens 0.050000000 0.0000000
## Hylocomium.splendens 0.014504209 0.9033053
## Hypericum.perforatum 0.054577465 0.5633803
## Hypnum.cupressiforme 0.041326531 0.8163265
## Hypnum.imponens 0.025000000 0.0000000
## Hypnum.jutlandicum 0.075000000 0.0000000
## Hypochaeris.radicata 0.025000000 0.0000000
## Kindbergia.praelonga 0.150000000 0.0000000
## Lathyrus.pratensis 0.075000000 0.0000000
## Leontodon.hispidus 0.125000000 0.0000000
## Leontodon.saxatilis 0.025000000 0.0000000
## Leucanthemum.vulgare 0.350000000 0.0000000
## Linum.catharticum 0.125000000 0.0000000
## Lolium.perenne 0.100000000 0.0000000
## Lophocolea.semiteres 0.000000000 1.0000000
## Lotus.corniculatus 0.084778116 0.8005221
## Luzula.multiflora 0.025000000 0.0000000
## Lysimachia.maritima 0.050000000 0.0000000
## Medicago.lupulina 0.125000000 0.0000000
## Myosotis.arvensis 0.125000000 0.0000000
## Ononis.repens 0.200000000 0.0000000
## Oxalis.acetosella 0.025000000 0.0000000
## Pastinaca.sativa 0.025000000 0.0000000
## Pentaglottis.sempervirens 0.025000000 0.0000000
## Pillosella.officinarum 0.300000000 0.0000000
## Plantago.coronopus 0.100000000 0.0000000
## Plantago.lanceolata 0.325000000 0.0000000
## Pleurozium.schreberi 0.100000000 0.0000000
## Poa.annua 0.075000000 0.0000000
## Poa.spp. 0.025000000 0.0000000
## Polytrichum.commune 0.025000000 0.0000000
## Polytrichum.commune.agg. 0.025000000 0.0000000
## Polytrichum.formosum 0.025000000 0.0000000
## Potentilla.reptans 0.100000000 0.0000000
## Prunella.vulgaris 0.011111111 0.8888889
## Pseudoscleropidum.purum 0.013461538 0.9230769
## Pteridium.aquilinum 0.075000000 0.0000000
## Ranunculus.acris 0.025000000 0.0000000
## Ranunculus.repens 0.075000000 0.0000000
## Reseda.lutea 0.025000000 0.0000000
## Rhinanthus.minor 0.025000000 0.0000000
## Rhizomnium.punctatum 0.025000000 0.0000000
## Rhytidadelphus.squarrosus 0.151851852 0.4938272
## Rhytidadelphus.triquetris 0.050000000 0.0000000
## Rubus.fruticosus 0.001744186 0.9302326
## Sanguisorba.minor.spp.minor 0.050000000 0.0000000
## Saniona.uncinata 0.050000000 0.0000000
## Sedum.anglicum 0.025000000 0.0000000
## Senecio.jacobaea 0.050000000 0.0000000
## Senecio.vulgaris 0.025000000 0.0000000
## Sonchus.arvensis 0.025000000 0.0000000
## Stachys.sylvatica 0.050000000 0.0000000
## Stellaria.apetala 0.025000000 0.0000000
## Taraxacum.agg. 0.275000000 0.0000000
## Thuidium.tamariscinum 0.075000000 0.0000000
## Thymus.polytrichus 0.200000000 0.0000000
## Trichostomum.crispulum 0.150000000 0.0000000
## Trifolium.campestre 0.175000000 0.0000000
## Trifolium.dubium 0.050000000 0.0000000
## Trifolium.pratense 0.100000000 0.0000000
## Trifolium.repens 0.125000000 0.0000000
## Trisetum.flavescens 0.100000000 0.0000000
## Tussilago.farfara 0.075000000 0.0000000
## Urtica.diocia 0.100000000 0.0000000
## Veronica.officinalis 0.000000000 1.0000000
## Vicia.sativa 0.025000000 0.0000000
## Viola.riviniana 0.025000000 0.0000000
## Weissia.controversa 0.000000000 1.0000000
## Zygodon.stirtonii 0.025000000 0.0000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 2 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 2
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 2
## Betula.pubescens Blackstonia.perfoliata
## 2 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 2 2
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 2 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 2
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 2 1
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 2
## Fissidens.dubius Fissidens.exilis
## 2 1
## Fragaria.vesca Galium.aparine
## 2 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 1
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 2 2
## Hypnum.cupressiforme Hypnum.imponens
## 2 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 1 2
## Lotus.corniculatus Luzula.multiflora
## 2 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 2
## Pseudoscleropidum.purum Pteridium.aquilinum
## 2 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 2
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 2
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 1 1
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 2
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 2 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.2797203 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 0.0250000 0.0250000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.0500000 0.5683837
## Anthyllis.vulneraria Aphanes.arvensis
## 0.1250000 0.0750000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.2000000 0.0500000
## Avenula.pratensis Bellis.perennis
## 0.0250000 0.8376963
## Betula.pubescens Blackstonia.perfoliata
## 1.0000000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.1000000 0.1500000
## Briza.media Bromus.hordeaceus
## 0.0750000 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.0000000 0.7843137
## Bryum.capillare Bryum.spp.
## 0.0250000 0.0750000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.3100775 0.2000000
## Campanula.rotundifolia Carex.distans
## 0.0250000 0.0500000
## Carex.flacca Carex.panicea
## 0.1750000 0.0250000
## Carlina.vulgaris Centaurea.nigra
## 0.2500000 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.1000000
## Centaurium.pulchellum Cerastium.fontanum
## 0.0250000 0.1750000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 1.0000000
## Cirsium.arvense Cirsium.palustre
## 0.0750000 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.0500000 0.0750000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.0500000
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.1250000
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.0750000
## Equisteum.variegatum Erigeron.acer
## 0.0250000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.6760563 0.1750000
## Festuca.rubra Festuca.rubra.agg.
## 0.3750000 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.0750000 1.0000000
## Fissidens.dubius Fissidens.exilis
## 0.9523810 0.0250000
## Fragaria.vesca Galium.aparine
## 0.8962427 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.1000000 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 0.0250000
## Holcus.spp. Holcus.lanatus
## 0.5250000 0.3000000
## Holcus.mollis Homalothecium.lutescens
## 0.1500000 0.0500000
## Hylocomium.splendens Hypericum.perforatum
## 0.9033053 0.5633803
## Hypnum.cupressiforme Hypnum.imponens
## 0.8163265 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 0.0250000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.0750000
## Leontodon.hispidus Leontodon.saxatilis
## 0.1250000 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.3500000 0.1250000
## Lolium.perenne Lophocolea.semiteres
## 0.1000000 1.0000000
## Lotus.corniculatus Luzula.multiflora
## 0.8005221 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.0500000 0.1250000
## Myosotis.arvensis Ononis.repens
## 0.1250000 0.2000000
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.3000000
## Plantago.coronopus Plantago.lanceolata
## 0.1000000 0.3250000
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.0750000
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.1000000 0.8888889
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.9230769 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.0750000
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.4938272
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.0500000 0.9302326
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.0500000 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.0500000
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.0500000 0.0250000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.2750000 0.0750000
## Thymus.polytrichus Trichostomum.crispulum
## 0.2000000 0.1500000
## Trifolium.campestre Trifolium.dubium
## 0.1750000 0.0500000
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.1250000
## Trisetum.flavescens Tussilago.farfara
## 0.1000000 0.0750000
## Urtica.diocia Veronica.officinalis
## 0.1000000 1.0000000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 1.0000000 0.0250000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.194 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 0.118
## Anthyllis.vulneraria Aphanes.arvensis
## 1.000 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 1.000 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.081
## Betula.pubescens Blackstonia.perfoliata
## 0.022 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.021 0.068
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 1.000 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.979 1.000
## Carlina.vulgaris Centaurea.nigra
## 1.000 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 1.000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 0.035
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.139 1.000
## Festuca.rubra Festuca.rubra.agg.
## 0.898 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 0.024
## Fissidens.dubius Fissidens.exilis
## 0.052 1.000
## Fragaria.vesca Galium.aparine
## 0.091 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 1.000 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.758 0.959
## Holcus.mollis Homalothecium.lutescens
## 0.979 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.054 0.120
## Hypnum.cupressiforme Hypnum.imponens
## 0.121 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.921 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 0.025
## Lotus.corniculatus Luzula.multiflora
## 0.125 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.914
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.888
## Plantago.coronopus Plantago.lanceolata
## 1.000 0.921
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 0.093
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.076 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.260
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 0.052
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 1.000 1.000
## Trifolium.campestre Trifolium.dubium
## 1.000 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 1.000
## Trisetum.flavescens Tussilago.farfara
## 1.000 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 0.030
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 0.023 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Betula pubescens has a high indval score of 1 and a low p value of 0.025. Therefore, this #is the indicator species for Birnessite.
clustClinochlore <-cut(PlantChemistry1$Clinochlore, 5, labels=FALSE)
ClinochloreIndval <- indval(as.matrix(PlantSpecies1), clustClinochlore, type= "long")
gr <- ClinochloreIndval$maxcls[ClinochloreIndval$pval<=0.05]
iv <- ClinochloreIndval$indcls[ClinochloreIndval$pval<=0.05]
pv <- ClinochloreIndval$pval[ClinochloreIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[ClinochloreIndval$pval<=0.05]
ClinochloreIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
ClinochloreIndvalsummary <- ClinochloreIndvalsummary[order(ClinochloreIndvalsummary$group,
-ClinochloreIndvalsummary$indval),]
print(ClinochloreIndvalsummary)
## group indval pvalue freq
## Holcus.lanatus 2 0.7795786 0.035 6
## Ranunculus.acris 2 0.5000000 0.046 3
## Hypnum.jutlandicum 2 0.4936709 0.043 1
## Galium.verum 2 0.4750831 0.047 1
## Pleurozium.schreberi 2 0.4642857 0.048 3
summary(indval(as.matrix(PlantSpecies1), clustClinochlore))
## cluster indicator_value probability
## Holcus.lanatus 2 0.7796 0.037
## Euphrasia.agg 2 0.7340 0.041
## Galium.verum 2 0.4751 0.040
## Pleurozium.schreberi 2 0.4643 0.043
##
## Sum of probabilities = 119.829
##
## Sum of Indicator Values = 19.67
##
## Sum of Significant Indicator Values = 2.45
##
## Number of Significant Indicators = 4
##
## Significant Indicator Distribution
##
## 2
## 4
print(indval(as.matrix(PlantSpecies1), clustClinochlore))
## $relfrq
## 1 5
## Agrostis.spp. 0.20512821 0.0
## Agrostis.canina 0.02564103 0.0
## Alchemilla.mollis 0.02564103 0.0
## Alopercus.pratensis 0.02564103 0.0
## Angelica.sylvestris 0.05128205 0.0
## Anthoxanthum.odoratum 0.12820513 0.5
## Anthyllis.vulneraria 0.10256410 0.5
## Aphanes.arvensis 0.07692308 0.0
## Arrhenatherum.elatius 0.17948718 0.5
## Atrichum.undulatum 0.02564103 0.5
## Avenula.pratensis 0.02564103 0.0
## Bellis.perennis 0.28205128 0.5
## Betula.pubescens 0.02564103 0.0
## Blackstonia.perfoliata 0.02564103 0.0
## Brachythecium.albicans 0.02564103 0.0
## Brachythecium.glareosum 0.02564103 0.0
## Brachythecium.mildeanum 0.10256410 0.0
## Brachythecium.rutabulum 0.15384615 0.0
## Briza.media 0.05128205 0.5
## Bromus.hordeaceus 0.02564103 0.0
## Bryum.c.f..caespiticium 0.02564103 0.0
## Bryum.c.f..pallescens 0.07692308 0.0
## Bryum.capillare 0.02564103 0.0
## Bryum.spp. 0.07692308 0.0
## Calliergonella.cupsidata 0.33333333 1.0
## Calypogeia.arguta 0.17948718 0.5
## Campanula.rotundifolia 0.02564103 0.0
## Carex.distans 0.05128205 0.0
## Carex.flacca 0.17948718 0.0
## Carex.panicea 0.02564103 0.0
## Carlina.vulgaris 0.25641026 0.0
## Centaurea.nigra 0.05128205 0.0
## Centaurium.erythraea 0.05128205 0.0
## Centaurium.littorale 0.10256410 0.0
## Centaurium.pulchellum 0.02564103 0.0
## Cerastium.fontanum 0.15384615 0.5
## Chamaenerion.angustifolium 0.02564103 0.0
## Cirriphyllum.piliferum 0.02564103 0.0
## Cirsium.arvense 0.07692308 0.0
## Cirsium.palustre 0.05128205 0.0
## Crepis.capillaris 0.05128205 0.0
## Cynosurus.cristatus 0.07692308 0.0
## Dactylis.glomerata 0.15384615 0.0
## Dactylorhiza.fuchsii 0.05128205 0.0
## Danthonia.decumbens 0.02564103 0.0
## Daucus.carrota 0.05128205 0.0
## Dicranella.spp. 0.02564103 0.0
## Dicranum.scoparium 0.10256410 0.5
## Epilobium.montanum 0.07692308 0.0
## Equisetum.arvense 0.07692308 0.0
## Equisteum.variegatum 0.02564103 0.0
## Erigeron.acer 0.05128205 0.0
## Euphrasia.agg 0.23076923 1.0
## Festuca.ovina 0.17948718 0.0
## Festuca.rubra 0.35897436 0.5
## Festuca.rubra.agg. 0.02564103 0.0
## Filipendula.ulmaria 0.07692308 0.0
## Fissidens.adianthoides 0.02564103 0.0
## Fissidens.dubius 0.05128205 0.0
## Fissidens.exilis 0.02564103 0.0
## Fragaria.vesca 0.12820513 0.5
## Galium.aparine 0.02564103 0.0
## Galium.arvense 0.02564103 0.0
## Galium.saxatile 0.02564103 0.0
## Galium.verum 0.07692308 0.5
## Geum.urbanum 0.02564103 0.0
## Glechoma.hederacea 0.02564103 0.0
## Helicotrichon.spp. 0.02564103 0.0
## Heracleum.sphondylium 0.07692308 0.0
## Hieracium.spp. 0.02564103 0.0
## Holcus.spp. 0.53846154 0.0
## Holcus.lanatus 0.25641026 1.0
## Holcus.mollis 0.15384615 0.0
## Homalothecium.lutescens 0.05128205 0.0
## Hylocomium.splendens 0.15384615 0.5
## Hypericum.perforatum 0.12820513 0.5
## Hypnum.cupressiforme 0.23076923 0.5
## Hypnum.imponens 0.02564103 0.0
## Hypnum.jutlandicum 0.05128205 0.5
## Hypochaeris.radicata 0.02564103 0.0
## Kindbergia.praelonga 0.15384615 0.0
## Lathyrus.pratensis 0.07692308 0.0
## Leontodon.hispidus 0.12820513 0.0
## Leontodon.saxatilis 0.02564103 0.0
## Leucanthemum.vulgare 0.33333333 0.5
## Linum.catharticum 0.12820513 0.0
## Lolium.perenne 0.10256410 0.0
## Lophocolea.semiteres 0.02564103 0.0
## Lotus.corniculatus 0.43589744 0.5
## Luzula.multiflora 0.02564103 0.0
## Lysimachia.maritima 0.05128205 0.0
## Medicago.lupulina 0.12820513 0.0
## Myosotis.arvensis 0.12820513 0.0
## Ononis.repens 0.20512821 0.0
## Oxalis.acetosella 0.02564103 0.0
## Pastinaca.sativa 0.02564103 0.0
## Pentaglottis.sempervirens 0.02564103 0.0
## Pillosella.officinarum 0.30769231 0.0
## Plantago.coronopus 0.10256410 0.0
## Plantago.lanceolata 0.30769231 0.5
## Pleurozium.schreberi 0.07692308 0.5
## Poa.annua 0.07692308 0.0
## Poa.spp. 0.02564103 0.0
## Polytrichum.commune 0.02564103 0.0
## Polytrichum.commune.agg. 0.02564103 0.0
## Polytrichum.formosum 0.02564103 0.0
## Potentilla.reptans 0.10256410 0.0
## Prunella.vulgaris 0.12820513 0.0
## Pseudoscleropidum.purum 0.17948718 0.5
## Pteridium.aquilinum 0.07692308 0.0
## Ranunculus.acris 0.00000000 0.5
## Ranunculus.repens 0.07692308 0.0
## Reseda.lutea 0.02564103 0.0
## Rhinanthus.minor 0.02564103 0.0
## Rhizomnium.punctatum 0.02564103 0.0
## Rhytidadelphus.squarrosus 0.30769231 0.5
## Rhytidadelphus.triquetris 0.05128205 0.0
## Rubus.fruticosus 0.05128205 0.0
## Sanguisorba.minor.spp.minor 0.02564103 0.5
## Saniona.uncinata 0.05128205 0.0
## Sedum.anglicum 0.02564103 0.0
## Senecio.jacobaea 0.05128205 0.0
## Senecio.vulgaris 0.02564103 0.0
## Sonchus.arvensis 0.02564103 0.0
## Stachys.sylvatica 0.05128205 0.0
## Stellaria.apetala 0.02564103 0.0
## Taraxacum.agg. 0.25641026 0.5
## Thuidium.tamariscinum 0.07692308 0.0
## Thymus.polytrichus 0.20512821 0.0
## Trichostomum.crispulum 0.15384615 0.0
## Trifolium.campestre 0.15384615 0.5
## Trifolium.dubium 0.05128205 0.0
## Trifolium.pratense 0.10256410 0.0
## Trifolium.repens 0.10256410 0.5
## Trisetum.flavescens 0.10256410 0.0
## Tussilago.farfara 0.07692308 0.0
## Urtica.diocia 0.10256410 0.0
## Veronica.officinalis 0.02564103 0.0
## Vicia.sativa 0.02564103 0.0
## Viola.riviniana 0.02564103 0.0
## Weissia.controversa 0.02564103 0.0
## Zygodon.stirtonii 0.02564103 0.0
##
## $relabu
## 1 5
## Agrostis.spp. 1.000000000 0.00000000
## Agrostis.canina 1.000000000 0.00000000
## Alchemilla.mollis 1.000000000 0.00000000
## Alopercus.pratensis 1.000000000 0.00000000
## Angelica.sylvestris 1.000000000 0.00000000
## Anthoxanthum.odoratum 0.154513205 0.84548680
## Anthyllis.vulneraria 0.106440556 0.89355944
## Aphanes.arvensis 1.000000000 0.00000000
## Arrhenatherum.elatius 0.028469751 0.97153025
## Atrichum.undulatum 0.048780488 0.95121951
## Avenula.pratensis 1.000000000 0.00000000
## Bellis.perennis 0.779661017 0.22033898
## Betula.pubescens 1.000000000 0.00000000
## Blackstonia.perfoliata 1.000000000 0.00000000
## Brachythecium.albicans 1.000000000 0.00000000
## Brachythecium.glareosum 1.000000000 0.00000000
## Brachythecium.mildeanum 1.000000000 0.00000000
## Brachythecium.rutabulum 1.000000000 0.00000000
## Briza.media 0.006277696 0.99372230
## Bromus.hordeaceus 1.000000000 0.00000000
## Bryum.c.f..caespiticium 1.000000000 0.00000000
## Bryum.c.f..pallescens 1.000000000 0.00000000
## Bryum.capillare 1.000000000 0.00000000
## Bryum.spp. 1.000000000 0.00000000
## Calliergonella.cupsidata 0.465753425 0.53424658
## Calypogeia.arguta 0.429268293 0.57073171
## Campanula.rotundifolia 1.000000000 0.00000000
## Carex.distans 1.000000000 0.00000000
## Carex.flacca 1.000000000 0.00000000
## Carex.panicea 1.000000000 0.00000000
## Carlina.vulgaris 1.000000000 0.00000000
## Centaurea.nigra 1.000000000 0.00000000
## Centaurium.erythraea 1.000000000 0.00000000
## Centaurium.littorale 1.000000000 0.00000000
## Centaurium.pulchellum 1.000000000 0.00000000
## Cerastium.fontanum 0.380952381 0.61904762
## Chamaenerion.angustifolium 1.000000000 0.00000000
## Cirriphyllum.piliferum 1.000000000 0.00000000
## Cirsium.arvense 1.000000000 0.00000000
## Cirsium.palustre 1.000000000 0.00000000
## Crepis.capillaris 1.000000000 0.00000000
## Cynosurus.cristatus 1.000000000 0.00000000
## Dactylis.glomerata 1.000000000 0.00000000
## Dactylorhiza.fuchsii 1.000000000 0.00000000
## Danthonia.decumbens 1.000000000 0.00000000
## Daucus.carrota 1.000000000 0.00000000
## Dicranella.spp. 1.000000000 0.00000000
## Dicranum.scoparium 0.260663507 0.73933649
## Epilobium.montanum 1.000000000 0.00000000
## Equisetum.arvense 1.000000000 0.00000000
## Equisteum.variegatum 1.000000000 0.00000000
## Erigeron.acer 1.000000000 0.00000000
## Euphrasia.agg 0.265997491 0.73400251
## Festuca.ovina 1.000000000 0.00000000
## Festuca.rubra 0.950570342 0.04942966
## Festuca.rubra.agg. 1.000000000 0.00000000
## Filipendula.ulmaria 1.000000000 0.00000000
## Fissidens.adianthoides 1.000000000 0.00000000
## Fissidens.dubius 1.000000000 0.00000000
## Fissidens.exilis 1.000000000 0.00000000
## Fragaria.vesca 0.183497537 0.81650246
## Galium.aparine 1.000000000 0.00000000
## Galium.arvense 1.000000000 0.00000000
## Galium.saxatile 1.000000000 0.00000000
## Galium.verum 0.049833887 0.95016611
## Geum.urbanum 1.000000000 0.00000000
## Glechoma.hederacea 1.000000000 0.00000000
## Helicotrichon.spp. 1.000000000 0.00000000
## Heracleum.sphondylium 1.000000000 0.00000000
## Hieracium.spp. 1.000000000 0.00000000
## Holcus.spp. 1.000000000 0.00000000
## Holcus.lanatus 0.220421394 0.77957861
## Holcus.mollis 1.000000000 0.00000000
## Homalothecium.lutescens 1.000000000 0.00000000
## Hylocomium.splendens 0.218610864 0.78138914
## Hypericum.perforatum 0.763636364 0.23636364
## Hypnum.cupressiforme 0.597938144 0.40206186
## Hypnum.imponens 1.000000000 0.00000000
## Hypnum.jutlandicum 0.012658228 0.98734177
## Hypochaeris.radicata 1.000000000 0.00000000
## Kindbergia.praelonga 1.000000000 0.00000000
## Lathyrus.pratensis 1.000000000 0.00000000
## Leontodon.hispidus 1.000000000 0.00000000
## Leontodon.saxatilis 1.000000000 0.00000000
## Leucanthemum.vulgare 0.832618026 0.16738197
## Linum.catharticum 1.000000000 0.00000000
## Lolium.perenne 1.000000000 0.00000000
## Lophocolea.semiteres 1.000000000 0.00000000
## Lotus.corniculatus 0.738450075 0.26154993
## Luzula.multiflora 1.000000000 0.00000000
## Lysimachia.maritima 1.000000000 0.00000000
## Medicago.lupulina 1.000000000 0.00000000
## Myosotis.arvensis 1.000000000 0.00000000
## Ononis.repens 1.000000000 0.00000000
## Oxalis.acetosella 1.000000000 0.00000000
## Pastinaca.sativa 1.000000000 0.00000000
## Pentaglottis.sempervirens 1.000000000 0.00000000
## Pillosella.officinarum 1.000000000 0.00000000
## Plantago.coronopus 1.000000000 0.00000000
## Plantago.lanceolata 0.134401973 0.86559803
## Pleurozium.schreberi 0.071428571 0.92857143
## Poa.annua 1.000000000 0.00000000
## Poa.spp. 1.000000000 0.00000000
## Polytrichum.commune 1.000000000 0.00000000
## Polytrichum.commune.agg. 1.000000000 0.00000000
## Polytrichum.formosum 1.000000000 0.00000000
## Potentilla.reptans 1.000000000 0.00000000
## Prunella.vulgaris 1.000000000 0.00000000
## Pseudoscleropidum.purum 0.241900648 0.75809935
## Pteridium.aquilinum 1.000000000 0.00000000
## Ranunculus.acris 0.000000000 1.00000000
## Ranunculus.repens 1.000000000 0.00000000
## Reseda.lutea 1.000000000 0.00000000
## Rhinanthus.minor 1.000000000 0.00000000
## Rhizomnium.punctatum 1.000000000 0.00000000
## Rhytidadelphus.squarrosus 0.677685950 0.32231405
## Rhytidadelphus.triquetris 1.000000000 0.00000000
## Rubus.fruticosus 1.000000000 0.00000000
## Sanguisorba.minor.spp.minor 0.148471616 0.85152838
## Saniona.uncinata 1.000000000 0.00000000
## Sedum.anglicum 1.000000000 0.00000000
## Senecio.jacobaea 1.000000000 0.00000000
## Senecio.vulgaris 1.000000000 0.00000000
## Sonchus.arvensis 1.000000000 0.00000000
## Stachys.sylvatica 1.000000000 0.00000000
## Stellaria.apetala 1.000000000 0.00000000
## Taraxacum.agg. 0.541176471 0.45882353
## Thuidium.tamariscinum 1.000000000 0.00000000
## Thymus.polytrichus 1.000000000 0.00000000
## Trichostomum.crispulum 1.000000000 0.00000000
## Trifolium.campestre 0.181297710 0.81870229
## Trifolium.dubium 1.000000000 0.00000000
## Trifolium.pratense 1.000000000 0.00000000
## Trifolium.repens 0.417910448 0.58208955
## Trisetum.flavescens 1.000000000 0.00000000
## Tussilago.farfara 1.000000000 0.00000000
## Urtica.diocia 1.000000000 0.00000000
## Veronica.officinalis 1.000000000 0.00000000
## Vicia.sativa 1.000000000 0.00000000
## Viola.riviniana 1.000000000 0.00000000
## Weissia.controversa 1.000000000 0.00000000
## Zygodon.stirtonii 1.000000000 0.00000000
##
## $indval
## 1 5
## Agrostis.spp. 0.2051282051 0.00000000
## Agrostis.canina 0.0256410256 0.00000000
## Alchemilla.mollis 0.0256410256 0.00000000
## Alopercus.pratensis 0.0256410256 0.00000000
## Angelica.sylvestris 0.0512820513 0.00000000
## Anthoxanthum.odoratum 0.0198093852 0.42274340
## Anthyllis.vulneraria 0.0109169801 0.44677972
## Aphanes.arvensis 0.0769230769 0.00000000
## Arrhenatherum.elatius 0.0051099553 0.48576512
## Atrichum.undulatum 0.0012507817 0.47560976
## Avenula.pratensis 0.0256410256 0.00000000
## Bellis.perennis 0.2199043894 0.11016949
## Betula.pubescens 0.0256410256 0.00000000
## Blackstonia.perfoliata 0.0256410256 0.00000000
## Brachythecium.albicans 0.0256410256 0.00000000
## Brachythecium.glareosum 0.0256410256 0.00000000
## Brachythecium.mildeanum 0.1025641026 0.00000000
## Brachythecium.rutabulum 0.1538461538 0.00000000
## Briza.media 0.0003219331 0.49686115
## Bromus.hordeaceus 0.0256410256 0.00000000
## Bryum.c.f..caespiticium 0.0256410256 0.00000000
## Bryum.c.f..pallescens 0.0769230769 0.00000000
## Bryum.capillare 0.0256410256 0.00000000
## Bryum.spp. 0.0769230769 0.00000000
## Calliergonella.cupsidata 0.1552511416 0.53424658
## Calypogeia.arguta 0.0770481551 0.28536585
## Campanula.rotundifolia 0.0256410256 0.00000000
## Carex.distans 0.0512820513 0.00000000
## Carex.flacca 0.1794871795 0.00000000
## Carex.panicea 0.0256410256 0.00000000
## Carlina.vulgaris 0.2564102564 0.00000000
## Centaurea.nigra 0.0512820513 0.00000000
## Centaurium.erythraea 0.0512820513 0.00000000
## Centaurium.littorale 0.1025641026 0.00000000
## Centaurium.pulchellum 0.0256410256 0.00000000
## Cerastium.fontanum 0.0586080586 0.30952381
## Chamaenerion.angustifolium 0.0256410256 0.00000000
## Cirriphyllum.piliferum 0.0256410256 0.00000000
## Cirsium.arvense 0.0769230769 0.00000000
## Cirsium.palustre 0.0512820513 0.00000000
## Crepis.capillaris 0.0512820513 0.00000000
## Cynosurus.cristatus 0.0769230769 0.00000000
## Dactylis.glomerata 0.1538461538 0.00000000
## Dactylorhiza.fuchsii 0.0512820513 0.00000000
## Danthonia.decumbens 0.0256410256 0.00000000
## Daucus.carrota 0.0512820513 0.00000000
## Dicranella.spp. 0.0256410256 0.00000000
## Dicranum.scoparium 0.0267347187 0.36966825
## Epilobium.montanum 0.0769230769 0.00000000
## Equisetum.arvense 0.0769230769 0.00000000
## Equisteum.variegatum 0.0256410256 0.00000000
## Erigeron.acer 0.0512820513 0.00000000
## Euphrasia.agg 0.0613840363 0.73400251
## Festuca.ovina 0.1794871795 0.00000000
## Festuca.rubra 0.3412303793 0.02471483
## Festuca.rubra.agg. 0.0256410256 0.00000000
## Filipendula.ulmaria 0.0769230769 0.00000000
## Fissidens.adianthoides 0.0256410256 0.00000000
## Fissidens.dubius 0.0512820513 0.00000000
## Fissidens.exilis 0.0256410256 0.00000000
## Fragaria.vesca 0.0235253252 0.40825123
## Galium.aparine 0.0256410256 0.00000000
## Galium.arvense 0.0256410256 0.00000000
## Galium.saxatile 0.0256410256 0.00000000
## Galium.verum 0.0038333759 0.47508306
## Geum.urbanum 0.0256410256 0.00000000
## Glechoma.hederacea 0.0256410256 0.00000000
## Helicotrichon.spp. 0.0256410256 0.00000000
## Heracleum.sphondylium 0.0769230769 0.00000000
## Hieracium.spp. 0.0256410256 0.00000000
## Holcus.spp. 0.5384615385 0.00000000
## Holcus.lanatus 0.0565183061 0.77957861
## Holcus.mollis 0.1538461538 0.00000000
## Homalothecium.lutescens 0.0512820513 0.00000000
## Hylocomium.splendens 0.0336324406 0.39069457
## Hypericum.perforatum 0.0979020979 0.11818182
## Hypnum.cupressiforme 0.1379857256 0.20103093
## Hypnum.imponens 0.0256410256 0.00000000
## Hypnum.jutlandicum 0.0006491399 0.49367089
## Hypochaeris.radicata 0.0256410256 0.00000000
## Kindbergia.praelonga 0.1538461538 0.00000000
## Lathyrus.pratensis 0.0769230769 0.00000000
## Leontodon.hispidus 0.1282051282 0.00000000
## Leontodon.saxatilis 0.0256410256 0.00000000
## Leucanthemum.vulgare 0.2775393419 0.08369099
## Linum.catharticum 0.1282051282 0.00000000
## Lolium.perenne 0.1025641026 0.00000000
## Lophocolea.semiteres 0.0256410256 0.00000000
## Lotus.corniculatus 0.3218884940 0.13077496
## Luzula.multiflora 0.0256410256 0.00000000
## Lysimachia.maritima 0.0512820513 0.00000000
## Medicago.lupulina 0.1282051282 0.00000000
## Myosotis.arvensis 0.1282051282 0.00000000
## Ononis.repens 0.2051282051 0.00000000
## Oxalis.acetosella 0.0256410256 0.00000000
## Pastinaca.sativa 0.0256410256 0.00000000
## Pentaglottis.sempervirens 0.0256410256 0.00000000
## Pillosella.officinarum 0.3076923077 0.00000000
## Plantago.coronopus 0.1025641026 0.00000000
## Plantago.lanceolata 0.0413544532 0.43279901
## Pleurozium.schreberi 0.0054945055 0.46428571
## Poa.annua 0.0769230769 0.00000000
## Poa.spp. 0.0256410256 0.00000000
## Polytrichum.commune 0.0256410256 0.00000000
## Polytrichum.commune.agg. 0.0256410256 0.00000000
## Polytrichum.formosum 0.0256410256 0.00000000
## Potentilla.reptans 0.1025641026 0.00000000
## Prunella.vulgaris 0.1282051282 0.00000000
## Pseudoscleropidum.purum 0.0434180650 0.37904968
## Pteridium.aquilinum 0.0769230769 0.00000000
## Ranunculus.acris 0.0000000000 0.50000000
## Ranunculus.repens 0.0769230769 0.00000000
## Reseda.lutea 0.0256410256 0.00000000
## Rhinanthus.minor 0.0256410256 0.00000000
## Rhizomnium.punctatum 0.0256410256 0.00000000
## Rhytidadelphus.squarrosus 0.2085187540 0.16115702
## Rhytidadelphus.triquetris 0.0512820513 0.00000000
## Rubus.fruticosus 0.0512820513 0.00000000
## Sanguisorba.minor.spp.minor 0.0038069645 0.42576419
## Saniona.uncinata 0.0512820513 0.00000000
## Sedum.anglicum 0.0256410256 0.00000000
## Senecio.jacobaea 0.0512820513 0.00000000
## Senecio.vulgaris 0.0256410256 0.00000000
## Sonchus.arvensis 0.0256410256 0.00000000
## Stachys.sylvatica 0.0512820513 0.00000000
## Stellaria.apetala 0.0256410256 0.00000000
## Taraxacum.agg. 0.1387631976 0.22941176
## Thuidium.tamariscinum 0.0769230769 0.00000000
## Thymus.polytrichus 0.2051282051 0.00000000
## Trichostomum.crispulum 0.1538461538 0.00000000
## Trifolium.campestre 0.0278919554 0.40935115
## Trifolium.dubium 0.0512820513 0.00000000
## Trifolium.pratense 0.1025641026 0.00000000
## Trifolium.repens 0.0428626100 0.29104478
## Trisetum.flavescens 0.1025641026 0.00000000
## Tussilago.farfara 0.0769230769 0.00000000
## Urtica.diocia 0.1025641026 0.00000000
## Veronica.officinalis 0.0256410256 0.00000000
## Vicia.sativa 0.0256410256 0.00000000
## Viola.riviniana 0.0256410256 0.00000000
## Weissia.controversa 0.0256410256 0.00000000
## Zygodon.stirtonii 0.0256410256 0.00000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 2
## Anthyllis.vulneraria Aphanes.arvensis
## 2 1
## Arrhenatherum.elatius Atrichum.undulatum
## 2 2
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 2 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 2 2
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 2
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 2 1
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 2 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 2 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 2
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 2 2
## Hypnum.cupressiforme Hypnum.imponens
## 2 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 2 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 2
## Pleurozium.schreberi Poa.annua
## 2 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 2 1
## Ranunculus.acris Ranunculus.repens
## 2 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 2 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 2 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 2 1
## Trifolium.pratense Trifolium.repens
## 1 2
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.20512821 0.02564103
## Alchemilla.mollis Alopercus.pratensis
## 0.02564103 0.02564103
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.05128205 0.42274340
## Anthyllis.vulneraria Aphanes.arvensis
## 0.44677972 0.07692308
## Arrhenatherum.elatius Atrichum.undulatum
## 0.48576512 0.47560976
## Avenula.pratensis Bellis.perennis
## 0.02564103 0.21990439
## Betula.pubescens Blackstonia.perfoliata
## 0.02564103 0.02564103
## Brachythecium.albicans Brachythecium.glareosum
## 0.02564103 0.02564103
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.10256410 0.15384615
## Briza.media Bromus.hordeaceus
## 0.49686115 0.02564103
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.02564103 0.07692308
## Bryum.capillare Bryum.spp.
## 0.02564103 0.07692308
## Calliergonella.cupsidata Calypogeia.arguta
## 0.53424658 0.28536585
## Campanula.rotundifolia Carex.distans
## 0.02564103 0.05128205
## Carex.flacca Carex.panicea
## 0.17948718 0.02564103
## Carlina.vulgaris Centaurea.nigra
## 0.25641026 0.05128205
## Centaurium.erythraea Centaurium.littorale
## 0.05128205 0.10256410
## Centaurium.pulchellum Cerastium.fontanum
## 0.02564103 0.30952381
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.02564103 0.02564103
## Cirsium.arvense Cirsium.palustre
## 0.07692308 0.05128205
## Crepis.capillaris Cynosurus.cristatus
## 0.05128205 0.07692308
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.15384615 0.05128205
## Danthonia.decumbens Daucus.carrota
## 0.02564103 0.05128205
## Dicranella.spp. Dicranum.scoparium
## 0.02564103 0.36966825
## Epilobium.montanum Equisetum.arvense
## 0.07692308 0.07692308
## Equisteum.variegatum Erigeron.acer
## 0.02564103 0.05128205
## Euphrasia.agg Festuca.ovina
## 0.73400251 0.17948718
## Festuca.rubra Festuca.rubra.agg.
## 0.34123038 0.02564103
## Filipendula.ulmaria Fissidens.adianthoides
## 0.07692308 0.02564103
## Fissidens.dubius Fissidens.exilis
## 0.05128205 0.02564103
## Fragaria.vesca Galium.aparine
## 0.40825123 0.02564103
## Galium.arvense Galium.saxatile
## 0.02564103 0.02564103
## Galium.verum Geum.urbanum
## 0.47508306 0.02564103
## Glechoma.hederacea Helicotrichon.spp.
## 0.02564103 0.02564103
## Heracleum.sphondylium Hieracium.spp.
## 0.07692308 0.02564103
## Holcus.spp. Holcus.lanatus
## 0.53846154 0.77957861
## Holcus.mollis Homalothecium.lutescens
## 0.15384615 0.05128205
## Hylocomium.splendens Hypericum.perforatum
## 0.39069457 0.11818182
## Hypnum.cupressiforme Hypnum.imponens
## 0.20103093 0.02564103
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.49367089 0.02564103
## Kindbergia.praelonga Lathyrus.pratensis
## 0.15384615 0.07692308
## Leontodon.hispidus Leontodon.saxatilis
## 0.12820513 0.02564103
## Leucanthemum.vulgare Linum.catharticum
## 0.27753934 0.12820513
## Lolium.perenne Lophocolea.semiteres
## 0.10256410 0.02564103
## Lotus.corniculatus Luzula.multiflora
## 0.32188849 0.02564103
## Lysimachia.maritima Medicago.lupulina
## 0.05128205 0.12820513
## Myosotis.arvensis Ononis.repens
## 0.12820513 0.20512821
## Oxalis.acetosella Pastinaca.sativa
## 0.02564103 0.02564103
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.02564103 0.30769231
## Plantago.coronopus Plantago.lanceolata
## 0.10256410 0.43279901
## Pleurozium.schreberi Poa.annua
## 0.46428571 0.07692308
## Poa.spp. Polytrichum.commune
## 0.02564103 0.02564103
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.02564103 0.02564103
## Potentilla.reptans Prunella.vulgaris
## 0.10256410 0.12820513
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.37904968 0.07692308
## Ranunculus.acris Ranunculus.repens
## 0.50000000 0.07692308
## Reseda.lutea Rhinanthus.minor
## 0.02564103 0.02564103
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.02564103 0.20851875
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.05128205 0.05128205
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.42576419 0.05128205
## Sedum.anglicum Senecio.jacobaea
## 0.02564103 0.05128205
## Senecio.vulgaris Sonchus.arvensis
## 0.02564103 0.02564103
## Stachys.sylvatica Stellaria.apetala
## 0.05128205 0.02564103
## Taraxacum.agg. Thuidium.tamariscinum
## 0.22941176 0.07692308
## Thymus.polytrichus Trichostomum.crispulum
## 0.20512821 0.15384615
## Trifolium.campestre Trifolium.dubium
## 0.40935115 0.05128205
## Trifolium.pratense Trifolium.repens
## 0.10256410 0.29104478
## Trisetum.flavescens Tussilago.farfara
## 0.10256410 0.07692308
## Urtica.diocia Veronica.officinalis
## 0.10256410 0.02564103
## Vicia.sativa Viola.riviniana
## 0.02564103 0.02564103
## Weissia.controversa Zygodon.stirtonii
## 0.02564103 0.02564103
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.877 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 0.162
## Anthyllis.vulneraria Aphanes.arvensis
## 0.099 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.074 0.108
## Avenula.pratensis Bellis.perennis
## 1.000 0.966
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 0.045 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.096 0.290
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.867 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.885 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.317
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.921 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 0.199
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.042 0.910
## Festuca.rubra Festuca.rubra.agg.
## 0.739 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 0.098 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 0.042 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.423 0.038
## Holcus.mollis Homalothecium.lutescens
## 0.924 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.193 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 0.924 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.044 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.852 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.823 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.791
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.679
## Plantago.coronopus Plantago.lanceolata
## 0.955 0.119
## Pleurozium.schreberi Poa.annua
## 0.047 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.198 1.000
## Ranunculus.acris Ranunculus.repens
## 0.055 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 1.000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.102 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.885 1.000
## Trifolium.campestre Trifolium.dubium
## 0.114 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 0.166
## Trisetum.flavescens Tussilago.farfara
## 0.903 1.000
## Urtica.diocia Veronica.officinalis
## 0.952 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Holcus lanatus has a high indval score of 0.780 and a low p value of 0.026. This species is #the indicator species for Clinochlore.
clustCuspidine <-cut(PlantChemistry1$Cuspidine, 5, labels=FALSE)
CuspidineIndval <- indval(as.matrix(PlantSpecies1), clustCuspidine, type= "long")
gr <- CuspidineIndval$maxcls[CuspidineIndval$pval<=0.05]
iv <- CuspidineIndval$indcls[CuspidineIndval$pval<=0.05]
pv <- CuspidineIndval$pval[CuspidineIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[CuspidineIndval$pval<=0.05]
CuspidineIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
CuspidineIndvalsummary <- CuspidineIndvalsummary[order(CuspidineIndvalsummary$group,
-CuspidineIndvalsummary$indval),]
print(CuspidineIndvalsummary)
## group indval pvalue freq
## Pillosella.officinarum 2 0.7745875 0.001 4
## Carlina.vulgaris 2 0.7064591 0.003 2
## Taraxacum.agg. 2 0.4402516 0.038 3
summary(indval(as.matrix(PlantSpecies1), clustCuspidine))
## cluster indicator_value probability
## Pillosella.officinarum 2 0.7746 0.003
## Carlina.vulgaris 2 0.7065 0.001
## Taraxacum.agg. 2 0.4403 0.038
##
## Sum of probabilities = 107.26
##
## Sum of Indicator Values = 16.36
##
## Sum of Significant Indicator Values = 1.92
##
## Number of Significant Indicators = 3
##
## Significant Indicator Distribution
##
## 2
## 3
print(indval(as.matrix(PlantSpecies1), clustCuspidine))
## $relfrq
## 1 5
## Agrostis.spp. 0.22857143 0.0000000
## Agrostis.canina 0.02857143 0.0000000
## Alchemilla.mollis 0.02857143 0.0000000
## Alopercus.pratensis 0.02857143 0.0000000
## Angelica.sylvestris 0.05714286 0.0000000
## Anthoxanthum.odoratum 0.17142857 0.0000000
## Anthyllis.vulneraria 0.14285714 0.0000000
## Aphanes.arvensis 0.08571429 0.0000000
## Arrhenatherum.elatius 0.22857143 0.0000000
## Atrichum.undulatum 0.05714286 0.0000000
## Avenula.pratensis 0.02857143 0.0000000
## Bellis.perennis 0.31428571 0.1666667
## Betula.pubescens 0.02857143 0.0000000
## Blackstonia.perfoliata 0.02857143 0.0000000
## Brachythecium.albicans 0.02857143 0.0000000
## Brachythecium.glareosum 0.02857143 0.0000000
## Brachythecium.mildeanum 0.11428571 0.0000000
## Brachythecium.rutabulum 0.17142857 0.0000000
## Briza.media 0.08571429 0.0000000
## Bromus.hordeaceus 0.02857143 0.0000000
## Bryum.c.f..caespiticium 0.02857143 0.0000000
## Bryum.c.f..pallescens 0.05714286 0.1666667
## Bryum.capillare 0.02857143 0.0000000
## Bryum.spp. 0.08571429 0.0000000
## Calliergonella.cupsidata 0.42857143 0.0000000
## Calypogeia.arguta 0.22857143 0.0000000
## Campanula.rotundifolia 0.02857143 0.0000000
## Carex.distans 0.02857143 0.1666667
## Carex.flacca 0.14285714 0.3333333
## Carex.panicea 0.02857143 0.0000000
## Carlina.vulgaris 0.14285714 0.8333333
## Centaurea.nigra 0.02857143 0.1666667
## Centaurium.erythraea 0.05714286 0.0000000
## Centaurium.littorale 0.05714286 0.3333333
## Centaurium.pulchellum 0.02857143 0.0000000
## Cerastium.fontanum 0.20000000 0.0000000
## Chamaenerion.angustifolium 0.02857143 0.0000000
## Cirriphyllum.piliferum 0.02857143 0.0000000
## Cirsium.arvense 0.08571429 0.0000000
## Cirsium.palustre 0.05714286 0.0000000
## Crepis.capillaris 0.05714286 0.0000000
## Cynosurus.cristatus 0.08571429 0.0000000
## Dactylis.glomerata 0.14285714 0.1666667
## Dactylorhiza.fuchsii 0.05714286 0.0000000
## Danthonia.decumbens 0.02857143 0.0000000
## Daucus.carrota 0.05714286 0.0000000
## Dicranella.spp. 0.00000000 0.1666667
## Dicranum.scoparium 0.14285714 0.0000000
## Epilobium.montanum 0.08571429 0.0000000
## Equisetum.arvense 0.08571429 0.0000000
## Equisteum.variegatum 0.02857143 0.0000000
## Erigeron.acer 0.05714286 0.0000000
## Euphrasia.agg 0.25714286 0.3333333
## Festuca.ovina 0.14285714 0.3333333
## Festuca.rubra 0.37142857 0.3333333
## Festuca.rubra.agg. 0.02857143 0.0000000
## Filipendula.ulmaria 0.08571429 0.0000000
## Fissidens.adianthoides 0.02857143 0.0000000
## Fissidens.dubius 0.05714286 0.0000000
## Fissidens.exilis 0.00000000 0.1666667
## Fragaria.vesca 0.17142857 0.0000000
## Galium.aparine 0.02857143 0.0000000
## Galium.arvense 0.02857143 0.0000000
## Galium.saxatile 0.00000000 0.1666667
## Galium.verum 0.11428571 0.0000000
## Geum.urbanum 0.02857143 0.0000000
## Glechoma.hederacea 0.02857143 0.0000000
## Helicotrichon.spp. 0.02857143 0.0000000
## Heracleum.sphondylium 0.08571429 0.0000000
## Hieracium.spp. 0.02857143 0.0000000
## Holcus.spp. 0.48571429 0.6666667
## Holcus.lanatus 0.31428571 0.1666667
## Holcus.mollis 0.17142857 0.0000000
## Homalothecium.lutescens 0.02857143 0.1666667
## Hylocomium.splendens 0.20000000 0.0000000
## Hypericum.perforatum 0.17142857 0.0000000
## Hypnum.cupressiforme 0.22857143 0.3333333
## Hypnum.imponens 0.02857143 0.0000000
## Hypnum.jutlandicum 0.08571429 0.0000000
## Hypochaeris.radicata 0.02857143 0.0000000
## Kindbergia.praelonga 0.17142857 0.0000000
## Lathyrus.pratensis 0.08571429 0.0000000
## Leontodon.hispidus 0.08571429 0.3333333
## Leontodon.saxatilis 0.02857143 0.0000000
## Leucanthemum.vulgare 0.37142857 0.1666667
## Linum.catharticum 0.08571429 0.3333333
## Lolium.perenne 0.11428571 0.0000000
## Lophocolea.semiteres 0.02857143 0.0000000
## Lotus.corniculatus 0.42857143 0.5000000
## Luzula.multiflora 0.02857143 0.0000000
## Lysimachia.maritima 0.05714286 0.0000000
## Medicago.lupulina 0.11428571 0.1666667
## Myosotis.arvensis 0.08571429 0.3333333
## Ononis.repens 0.17142857 0.3333333
## Oxalis.acetosella 0.02857143 0.0000000
## Pastinaca.sativa 0.02857143 0.0000000
## Pentaglottis.sempervirens 0.02857143 0.0000000
## Pillosella.officinarum 0.20000000 0.8333333
## Plantago.coronopus 0.05714286 0.3333333
## Plantago.lanceolata 0.31428571 0.3333333
## Pleurozium.schreberi 0.11428571 0.0000000
## Poa.annua 0.05714286 0.1666667
## Poa.spp. 0.02857143 0.0000000
## Polytrichum.commune 0.02857143 0.0000000
## Polytrichum.commune.agg. 0.02857143 0.0000000
## Polytrichum.formosum 0.02857143 0.0000000
## Potentilla.reptans 0.11428571 0.0000000
## Prunella.vulgaris 0.11428571 0.1666667
## Pseudoscleropidum.purum 0.20000000 0.1666667
## Pteridium.aquilinum 0.08571429 0.0000000
## Ranunculus.acris 0.02857143 0.0000000
## Ranunculus.repens 0.08571429 0.0000000
## Reseda.lutea 0.02857143 0.0000000
## Rhinanthus.minor 0.02857143 0.0000000
## Rhizomnium.punctatum 0.02857143 0.0000000
## Rhytidadelphus.squarrosus 0.34285714 0.1666667
## Rhytidadelphus.triquetris 0.05714286 0.0000000
## Rubus.fruticosus 0.05714286 0.0000000
## Sanguisorba.minor.spp.minor 0.05714286 0.0000000
## Saniona.uncinata 0.05714286 0.0000000
## Sedum.anglicum 0.02857143 0.0000000
## Senecio.jacobaea 0.05714286 0.0000000
## Senecio.vulgaris 0.02857143 0.0000000
## Sonchus.arvensis 0.02857143 0.0000000
## Stachys.sylvatica 0.05714286 0.0000000
## Stellaria.apetala 0.02857143 0.0000000
## Taraxacum.agg. 0.20000000 0.6666667
## Thuidium.tamariscinum 0.08571429 0.0000000
## Thymus.polytrichus 0.14285714 0.5000000
## Trichostomum.crispulum 0.11428571 0.3333333
## Trifolium.campestre 0.20000000 0.0000000
## Trifolium.dubium 0.02857143 0.1666667
## Trifolium.pratense 0.08571429 0.1666667
## Trifolium.repens 0.14285714 0.0000000
## Trisetum.flavescens 0.11428571 0.0000000
## Tussilago.farfara 0.05714286 0.1666667
## Urtica.diocia 0.08571429 0.1666667
## Veronica.officinalis 0.02857143 0.0000000
## Vicia.sativa 0.02857143 0.0000000
## Viola.riviniana 0.02857143 0.0000000
## Weissia.controversa 0.02857143 0.0000000
## Zygodon.stirtonii 0.02857143 0.0000000
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.00000000
## Agrostis.canina 1.00000000 0.00000000
## Alchemilla.mollis 1.00000000 0.00000000
## Alopercus.pratensis 1.00000000 0.00000000
## Angelica.sylvestris 1.00000000 0.00000000
## Anthoxanthum.odoratum 1.00000000 0.00000000
## Anthyllis.vulneraria 1.00000000 0.00000000
## Aphanes.arvensis 1.00000000 0.00000000
## Arrhenatherum.elatius 1.00000000 0.00000000
## Atrichum.undulatum 1.00000000 0.00000000
## Avenula.pratensis 1.00000000 0.00000000
## Bellis.perennis 0.47902571 0.52097429
## Betula.pubescens 1.00000000 0.00000000
## Blackstonia.perfoliata 1.00000000 0.00000000
## Brachythecium.albicans 1.00000000 0.00000000
## Brachythecium.glareosum 1.00000000 0.00000000
## Brachythecium.mildeanum 1.00000000 0.00000000
## Brachythecium.rutabulum 1.00000000 0.00000000
## Briza.media 1.00000000 0.00000000
## Bromus.hordeaceus 1.00000000 0.00000000
## Bryum.c.f..caespiticium 1.00000000 0.00000000
## Bryum.c.f..pallescens 0.19354839 0.80645161
## Bryum.capillare 1.00000000 0.00000000
## Bryum.spp. 1.00000000 0.00000000
## Calliergonella.cupsidata 1.00000000 0.00000000
## Calypogeia.arguta 1.00000000 0.00000000
## Campanula.rotundifolia 1.00000000 0.00000000
## Carex.distans 0.27931961 0.72068039
## Carex.flacca 0.86930545 0.13069455
## Carex.panicea 1.00000000 0.00000000
## Carlina.vulgaris 0.15224913 0.84775087
## Centaurea.nigra 0.25531915 0.74468085
## Centaurium.erythraea 1.00000000 0.00000000
## Centaurium.littorale 0.18604651 0.81395349
## Centaurium.pulchellum 1.00000000 0.00000000
## Cerastium.fontanum 1.00000000 0.00000000
## Chamaenerion.angustifolium 1.00000000 0.00000000
## Cirriphyllum.piliferum 1.00000000 0.00000000
## Cirsium.arvense 1.00000000 0.00000000
## Cirsium.palustre 1.00000000 0.00000000
## Crepis.capillaris 1.00000000 0.00000000
## Cynosurus.cristatus 1.00000000 0.00000000
## Dactylis.glomerata 0.55242967 0.44757033
## Dactylorhiza.fuchsii 1.00000000 0.00000000
## Danthonia.decumbens 1.00000000 0.00000000
## Daucus.carrota 1.00000000 0.00000000
## Dicranella.spp. 0.00000000 1.00000000
## Dicranum.scoparium 1.00000000 0.00000000
## Epilobium.montanum 1.00000000 0.00000000
## Equisetum.arvense 1.00000000 0.00000000
## Equisteum.variegatum 1.00000000 0.00000000
## Erigeron.acer 1.00000000 0.00000000
## Euphrasia.agg 0.12139378 0.87860622
## Festuca.ovina 0.37347437 0.62652563
## Festuca.rubra 0.39964357 0.60035643
## Festuca.rubra.agg. 1.00000000 0.00000000
## Filipendula.ulmaria 1.00000000 0.00000000
## Fissidens.adianthoides 1.00000000 0.00000000
## Fissidens.dubius 1.00000000 0.00000000
## Fissidens.exilis 0.00000000 1.00000000
## Fragaria.vesca 1.00000000 0.00000000
## Galium.aparine 1.00000000 0.00000000
## Galium.arvense 1.00000000 0.00000000
## Galium.saxatile 0.00000000 1.00000000
## Galium.verum 1.00000000 0.00000000
## Geum.urbanum 1.00000000 0.00000000
## Glechoma.hederacea 1.00000000 0.00000000
## Helicotrichon.spp. 1.00000000 0.00000000
## Heracleum.sphondylium 1.00000000 0.00000000
## Hieracium.spp. 1.00000000 0.00000000
## Holcus.spp. 0.46292521 0.53707479
## Holcus.lanatus 0.83313468 0.16686532
## Holcus.mollis 1.00000000 0.00000000
## Homalothecium.lutescens 0.01060071 0.98939929
## Hylocomium.splendens 1.00000000 0.00000000
## Hypericum.perforatum 1.00000000 0.00000000
## Hypnum.cupressiforme 0.24148607 0.75851393
## Hypnum.imponens 1.00000000 0.00000000
## Hypnum.jutlandicum 1.00000000 0.00000000
## Hypochaeris.radicata 1.00000000 0.00000000
## Kindbergia.praelonga 1.00000000 0.00000000
## Lathyrus.pratensis 1.00000000 0.00000000
## Leontodon.hispidus 0.12684989 0.87315011
## Leontodon.saxatilis 1.00000000 0.00000000
## Leucanthemum.vulgare 0.72440945 0.27559055
## Linum.catharticum 0.24148607 0.75851393
## Lolium.perenne 1.00000000 0.00000000
## Lophocolea.semiteres 1.00000000 0.00000000
## Lotus.corniculatus 0.29126611 0.70873389
## Luzula.multiflora 1.00000000 0.00000000
## Lysimachia.maritima 1.00000000 0.00000000
## Medicago.lupulina 0.77419355 0.22580645
## Myosotis.arvensis 0.18060201 0.81939799
## Ononis.repens 0.93488372 0.06511628
## Oxalis.acetosella 1.00000000 0.00000000
## Pastinaca.sativa 1.00000000 0.00000000
## Pentaglottis.sempervirens 1.00000000 0.00000000
## Pillosella.officinarum 0.07049499 0.92950501
## Plantago.coronopus 0.22222222 0.77777778
## Plantago.lanceolata 0.25141859 0.74858141
## Pleurozium.schreberi 1.00000000 0.00000000
## Poa.annua 0.26386233 0.73613767
## Poa.spp. 1.00000000 0.00000000
## Polytrichum.commune 1.00000000 0.00000000
## Polytrichum.commune.agg. 1.00000000 0.00000000
## Polytrichum.formosum 1.00000000 0.00000000
## Potentilla.reptans 1.00000000 0.00000000
## Prunella.vulgaris 0.46153846 0.53846154
## Pseudoscleropidum.purum 0.77987421 0.22012579
## Pteridium.aquilinum 1.00000000 0.00000000
## Ranunculus.acris 1.00000000 0.00000000
## Ranunculus.repens 1.00000000 0.00000000
## Reseda.lutea 1.00000000 0.00000000
## Rhinanthus.minor 1.00000000 0.00000000
## Rhizomnium.punctatum 1.00000000 0.00000000
## Rhytidadelphus.squarrosus 0.57831325 0.42168675
## Rhytidadelphus.triquetris 1.00000000 0.00000000
## Rubus.fruticosus 1.00000000 0.00000000
## Sanguisorba.minor.spp.minor 1.00000000 0.00000000
## Saniona.uncinata 1.00000000 0.00000000
## Sedum.anglicum 1.00000000 0.00000000
## Senecio.jacobaea 1.00000000 0.00000000
## Senecio.vulgaris 1.00000000 0.00000000
## Sonchus.arvensis 1.00000000 0.00000000
## Stachys.sylvatica 1.00000000 0.00000000
## Stellaria.apetala 1.00000000 0.00000000
## Taraxacum.agg. 0.33962264 0.66037736
## Thuidium.tamariscinum 1.00000000 0.00000000
## Thymus.polytrichus 0.38759433 0.61240567
## Trichostomum.crispulum 0.22222222 0.77777778
## Trifolium.campestre 1.00000000 0.00000000
## Trifolium.dubium 0.19051352 0.80948648
## Trifolium.pratense 0.06130268 0.93869732
## Trifolium.repens 1.00000000 0.00000000
## Trisetum.flavescens 1.00000000 0.00000000
## Tussilago.farfara 0.52054795 0.47945205
## Urtica.diocia 0.72564390 0.27435610
## Veronica.officinalis 1.00000000 0.00000000
## Vicia.sativa 1.00000000 0.00000000
## Viola.riviniana 1.00000000 0.00000000
## Weissia.controversa 1.00000000 0.00000000
## Zygodon.stirtonii 1.00000000 0.00000000
##
## $indval
## 1 5
## Agrostis.spp. 0.2285714286 0.00000000
## Agrostis.canina 0.0285714286 0.00000000
## Alchemilla.mollis 0.0285714286 0.00000000
## Alopercus.pratensis 0.0285714286 0.00000000
## Angelica.sylvestris 0.0571428571 0.00000000
## Anthoxanthum.odoratum 0.1714285714 0.00000000
## Anthyllis.vulneraria 0.1428571429 0.00000000
## Aphanes.arvensis 0.0857142857 0.00000000
## Arrhenatherum.elatius 0.2285714286 0.00000000
## Atrichum.undulatum 0.0571428571 0.00000000
## Avenula.pratensis 0.0285714286 0.00000000
## Bellis.perennis 0.1505509376 0.08682905
## Betula.pubescens 0.0285714286 0.00000000
## Blackstonia.perfoliata 0.0285714286 0.00000000
## Brachythecium.albicans 0.0285714286 0.00000000
## Brachythecium.glareosum 0.0285714286 0.00000000
## Brachythecium.mildeanum 0.1142857143 0.00000000
## Brachythecium.rutabulum 0.1714285714 0.00000000
## Briza.media 0.0857142857 0.00000000
## Bromus.hordeaceus 0.0285714286 0.00000000
## Bryum.c.f..caespiticium 0.0285714286 0.00000000
## Bryum.c.f..pallescens 0.0110599078 0.13440860
## Bryum.capillare 0.0285714286 0.00000000
## Bryum.spp. 0.0857142857 0.00000000
## Calliergonella.cupsidata 0.4285714286 0.00000000
## Calypogeia.arguta 0.2285714286 0.00000000
## Campanula.rotundifolia 0.0285714286 0.00000000
## Carex.distans 0.0079805602 0.12011340
## Carex.flacca 0.1241864931 0.04356485
## Carex.panicea 0.0285714286 0.00000000
## Carlina.vulgaris 0.0217498764 0.70645905
## Centaurea.nigra 0.0072948328 0.12411348
## Centaurium.erythraea 0.0571428571 0.00000000
## Centaurium.littorale 0.0106312292 0.27131783
## Centaurium.pulchellum 0.0285714286 0.00000000
## Cerastium.fontanum 0.2000000000 0.00000000
## Chamaenerion.angustifolium 0.0285714286 0.00000000
## Cirriphyllum.piliferum 0.0285714286 0.00000000
## Cirsium.arvense 0.0857142857 0.00000000
## Cirsium.palustre 0.0571428571 0.00000000
## Crepis.capillaris 0.0571428571 0.00000000
## Cynosurus.cristatus 0.0857142857 0.00000000
## Dactylis.glomerata 0.0789185239 0.07459506
## Dactylorhiza.fuchsii 0.0571428571 0.00000000
## Danthonia.decumbens 0.0285714286 0.00000000
## Daucus.carrota 0.0571428571 0.00000000
## Dicranella.spp. 0.0000000000 0.16666667
## Dicranum.scoparium 0.1428571429 0.00000000
## Epilobium.montanum 0.0857142857 0.00000000
## Equisetum.arvense 0.0857142857 0.00000000
## Equisteum.variegatum 0.0285714286 0.00000000
## Erigeron.acer 0.0571428571 0.00000000
## Euphrasia.agg 0.0312155435 0.29286874
## Festuca.ovina 0.0533534813 0.20884188
## Festuca.rubra 0.1484390415 0.20011881
## Festuca.rubra.agg. 0.0285714286 0.00000000
## Filipendula.ulmaria 0.0857142857 0.00000000
## Fissidens.adianthoides 0.0285714286 0.00000000
## Fissidens.dubius 0.0571428571 0.00000000
## Fissidens.exilis 0.0000000000 0.16666667
## Fragaria.vesca 0.1714285714 0.00000000
## Galium.aparine 0.0285714286 0.00000000
## Galium.arvense 0.0285714286 0.00000000
## Galium.saxatile 0.0000000000 0.16666667
## Galium.verum 0.1142857143 0.00000000
## Geum.urbanum 0.0285714286 0.00000000
## Glechoma.hederacea 0.0285714286 0.00000000
## Helicotrichon.spp. 0.0285714286 0.00000000
## Heracleum.sphondylium 0.0857142857 0.00000000
## Hieracium.spp. 0.0285714286 0.00000000
## Holcus.spp. 0.2248493860 0.35804986
## Holcus.lanatus 0.2618423293 0.02781089
## Holcus.mollis 0.1714285714 0.00000000
## Homalothecium.lutescens 0.0003028773 0.16489988
## Hylocomium.splendens 0.2000000000 0.00000000
## Hypericum.perforatum 0.1714285714 0.00000000
## Hypnum.cupressiforme 0.0551968156 0.25283798
## Hypnum.imponens 0.0285714286 0.00000000
## Hypnum.jutlandicum 0.0857142857 0.00000000
## Hypochaeris.radicata 0.0285714286 0.00000000
## Kindbergia.praelonga 0.1714285714 0.00000000
## Lathyrus.pratensis 0.0857142857 0.00000000
## Leontodon.hispidus 0.0108728481 0.29105004
## Leontodon.saxatilis 0.0285714286 0.00000000
## Leucanthemum.vulgare 0.2690663667 0.04593176
## Linum.catharticum 0.0206988058 0.25283798
## Lolium.perenne 0.1142857143 0.00000000
## Lophocolea.semiteres 0.0285714286 0.00000000
## Lotus.corniculatus 0.1248283318 0.35436695
## Luzula.multiflora 0.0285714286 0.00000000
## Lysimachia.maritima 0.0571428571 0.00000000
## Medicago.lupulina 0.0884792627 0.03763441
## Myosotis.arvensis 0.0154801720 0.27313266
## Ononis.repens 0.1602657807 0.02170543
## Oxalis.acetosella 0.0285714286 0.00000000
## Pastinaca.sativa 0.0285714286 0.00000000
## Pentaglottis.sempervirens 0.0285714286 0.00000000
## Pillosella.officinarum 0.0140989989 0.77458750
## Plantago.coronopus 0.0126984127 0.25925926
## Plantago.lanceolata 0.0790172726 0.24952714
## Pleurozium.schreberi 0.1142857143 0.00000000
## Poa.annua 0.0150778476 0.12268961
## Poa.spp. 0.0285714286 0.00000000
## Polytrichum.commune 0.0285714286 0.00000000
## Polytrichum.commune.agg. 0.0285714286 0.00000000
## Polytrichum.formosum 0.0285714286 0.00000000
## Potentilla.reptans 0.1142857143 0.00000000
## Prunella.vulgaris 0.0527472527 0.08974359
## Pseudoscleropidum.purum 0.1559748428 0.03668763
## Pteridium.aquilinum 0.0857142857 0.00000000
## Ranunculus.acris 0.0285714286 0.00000000
## Ranunculus.repens 0.0857142857 0.00000000
## Reseda.lutea 0.0285714286 0.00000000
## Rhinanthus.minor 0.0285714286 0.00000000
## Rhizomnium.punctatum 0.0285714286 0.00000000
## Rhytidadelphus.squarrosus 0.1982788296 0.07028112
## Rhytidadelphus.triquetris 0.0571428571 0.00000000
## Rubus.fruticosus 0.0571428571 0.00000000
## Sanguisorba.minor.spp.minor 0.0571428571 0.00000000
## Saniona.uncinata 0.0571428571 0.00000000
## Sedum.anglicum 0.0285714286 0.00000000
## Senecio.jacobaea 0.0571428571 0.00000000
## Senecio.vulgaris 0.0285714286 0.00000000
## Sonchus.arvensis 0.0285714286 0.00000000
## Stachys.sylvatica 0.0571428571 0.00000000
## Stellaria.apetala 0.0285714286 0.00000000
## Taraxacum.agg. 0.0679245283 0.44025157
## Thuidium.tamariscinum 0.0857142857 0.00000000
## Thymus.polytrichus 0.0553706183 0.30620284
## Trichostomum.crispulum 0.0253968254 0.25925926
## Trifolium.campestre 0.2000000000 0.00000000
## Trifolium.dubium 0.0054432435 0.13491441
## Trifolium.pratense 0.0052545156 0.15644955
## Trifolium.repens 0.1428571429 0.00000000
## Trisetum.flavescens 0.1142857143 0.00000000
## Tussilago.farfara 0.0297455969 0.07990868
## Urtica.diocia 0.0621980483 0.04572602
## Veronica.officinalis 0.0285714286 0.00000000
## Vicia.sativa 0.0285714286 0.00000000
## Viola.riviniana 0.0285714286 0.00000000
## Weissia.controversa 0.0285714286 0.00000000
## Zygodon.stirtonii 0.0285714286 0.00000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 2
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 2
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 2 2
## Centaurium.erythraea Centaurium.littorale
## 1 2
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 2 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 2 2
## Festuca.rubra Festuca.rubra.agg.
## 2 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 2
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 2
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 2 1
## Holcus.mollis Homalothecium.lutescens
## 1 2
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 2 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 2 1
## Leucanthemum.vulgare Linum.catharticum
## 1 2
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 2 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 2 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 2
## Plantago.coronopus Plantago.lanceolata
## 2 2
## Pleurozium.schreberi Poa.annua
## 1 2
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 2
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 2 1
## Thymus.polytrichus Trichostomum.crispulum
## 2 2
## Trifolium.campestre Trifolium.dubium
## 1 2
## Trifolium.pratense Trifolium.repens
## 2 1
## Trisetum.flavescens Tussilago.farfara
## 1 2
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.22857143 0.02857143
## Alchemilla.mollis Alopercus.pratensis
## 0.02857143 0.02857143
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.05714286 0.17142857
## Anthyllis.vulneraria Aphanes.arvensis
## 0.14285714 0.08571429
## Arrhenatherum.elatius Atrichum.undulatum
## 0.22857143 0.05714286
## Avenula.pratensis Bellis.perennis
## 0.02857143 0.15055094
## Betula.pubescens Blackstonia.perfoliata
## 0.02857143 0.02857143
## Brachythecium.albicans Brachythecium.glareosum
## 0.02857143 0.02857143
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.11428571 0.17142857
## Briza.media Bromus.hordeaceus
## 0.08571429 0.02857143
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.02857143 0.13440860
## Bryum.capillare Bryum.spp.
## 0.02857143 0.08571429
## Calliergonella.cupsidata Calypogeia.arguta
## 0.42857143 0.22857143
## Campanula.rotundifolia Carex.distans
## 0.02857143 0.12011340
## Carex.flacca Carex.panicea
## 0.12418649 0.02857143
## Carlina.vulgaris Centaurea.nigra
## 0.70645905 0.12411348
## Centaurium.erythraea Centaurium.littorale
## 0.05714286 0.27131783
## Centaurium.pulchellum Cerastium.fontanum
## 0.02857143 0.20000000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.02857143 0.02857143
## Cirsium.arvense Cirsium.palustre
## 0.08571429 0.05714286
## Crepis.capillaris Cynosurus.cristatus
## 0.05714286 0.08571429
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.07891852 0.05714286
## Danthonia.decumbens Daucus.carrota
## 0.02857143 0.05714286
## Dicranella.spp. Dicranum.scoparium
## 0.16666667 0.14285714
## Epilobium.montanum Equisetum.arvense
## 0.08571429 0.08571429
## Equisteum.variegatum Erigeron.acer
## 0.02857143 0.05714286
## Euphrasia.agg Festuca.ovina
## 0.29286874 0.20884188
## Festuca.rubra Festuca.rubra.agg.
## 0.20011881 0.02857143
## Filipendula.ulmaria Fissidens.adianthoides
## 0.08571429 0.02857143
## Fissidens.dubius Fissidens.exilis
## 0.05714286 0.16666667
## Fragaria.vesca Galium.aparine
## 0.17142857 0.02857143
## Galium.arvense Galium.saxatile
## 0.02857143 0.16666667
## Galium.verum Geum.urbanum
## 0.11428571 0.02857143
## Glechoma.hederacea Helicotrichon.spp.
## 0.02857143 0.02857143
## Heracleum.sphondylium Hieracium.spp.
## 0.08571429 0.02857143
## Holcus.spp. Holcus.lanatus
## 0.35804986 0.26184233
## Holcus.mollis Homalothecium.lutescens
## 0.17142857 0.16489988
## Hylocomium.splendens Hypericum.perforatum
## 0.20000000 0.17142857
## Hypnum.cupressiforme Hypnum.imponens
## 0.25283798 0.02857143
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.08571429 0.02857143
## Kindbergia.praelonga Lathyrus.pratensis
## 0.17142857 0.08571429
## Leontodon.hispidus Leontodon.saxatilis
## 0.29105004 0.02857143
## Leucanthemum.vulgare Linum.catharticum
## 0.26906637 0.25283798
## Lolium.perenne Lophocolea.semiteres
## 0.11428571 0.02857143
## Lotus.corniculatus Luzula.multiflora
## 0.35436695 0.02857143
## Lysimachia.maritima Medicago.lupulina
## 0.05714286 0.08847926
## Myosotis.arvensis Ononis.repens
## 0.27313266 0.16026578
## Oxalis.acetosella Pastinaca.sativa
## 0.02857143 0.02857143
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.02857143 0.77458750
## Plantago.coronopus Plantago.lanceolata
## 0.25925926 0.24952714
## Pleurozium.schreberi Poa.annua
## 0.11428571 0.12268961
## Poa.spp. Polytrichum.commune
## 0.02857143 0.02857143
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.02857143 0.02857143
## Potentilla.reptans Prunella.vulgaris
## 0.11428571 0.08974359
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.15597484 0.08571429
## Ranunculus.acris Ranunculus.repens
## 0.02857143 0.08571429
## Reseda.lutea Rhinanthus.minor
## 0.02857143 0.02857143
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.02857143 0.19827883
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.05714286 0.05714286
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.05714286 0.05714286
## Sedum.anglicum Senecio.jacobaea
## 0.02857143 0.05714286
## Senecio.vulgaris Sonchus.arvensis
## 0.02857143 0.02857143
## Stachys.sylvatica Stellaria.apetala
## 0.05714286 0.02857143
## Taraxacum.agg. Thuidium.tamariscinum
## 0.44025157 0.08571429
## Thymus.polytrichus Trichostomum.crispulum
## 0.30620284 0.25925926
## Trifolium.campestre Trifolium.dubium
## 0.20000000 0.13491441
## Trifolium.pratense Trifolium.repens
## 0.15644955 0.14285714
## Trisetum.flavescens Tussilago.farfara
## 0.11428571 0.07990868
## Urtica.diocia Veronica.officinalis
## 0.06219805 0.02857143
## Vicia.sativa Viola.riviniana
## 0.02857143 0.02857143
## Weissia.controversa Zygodon.stirtonii
## 0.02857143 0.02857143
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.444 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 0.550
## Anthyllis.vulneraria Aphanes.arvensis
## 0.543 0.899
## Arrhenatherum.elatius Atrichum.undulatum
## 0.355 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.973
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.793 0.562
## Briza.media Bromus.hordeaceus
## 0.800 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 0.263
## Bryum.capillare Bryum.spp.
## 1.000 0.881
## Calliergonella.cupsidata Calypogeia.arguta
## 0.127 0.443
## Campanula.rotundifolia Carex.distans
## 1.000 0.286
## Carex.flacca Carex.panicea
## 0.851 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.001 0.292
## Centaurium.erythraea Centaurium.littorale
## 0.853 0.061
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.470
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 0.870
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 0.139 0.593
## Epilobium.montanum Equisetum.arvense
## 0.902 0.882
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.273 0.191
## Festuca.rubra Festuca.rubra.agg.
## 0.881 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.787 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 0.149
## Fragaria.vesca Galium.aparine
## 0.577 1.000
## Galium.arvense Galium.saxatile
## 1.000 0.163
## Galium.verum Geum.urbanum
## 0.791 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 0.772 1.000
## Holcus.spp. Holcus.lanatus
## 0.497 0.472
## Holcus.mollis Homalothecium.lutescens
## 0.487 0.131
## Hylocomium.splendens Hypericum.perforatum
## 0.505 0.558
## Hypnum.cupressiforme Hypnum.imponens
## 0.334 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.765 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.545 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 0.063 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.533 0.121
## Lolium.perenne Lophocolea.semiteres
## 0.685 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.411 1.000
## Lysimachia.maritima Medicago.lupulina
## 0.887 0.950
## Myosotis.arvensis Ononis.repens
## 0.083 0.771
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.002
## Plantago.coronopus Plantago.lanceolata
## 0.068 0.592
## Pleurozium.schreberi Poa.annua
## 0.810 0.302
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 0.707 0.930
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.697 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 0.890
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.716
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.030 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.071 0.097
## Trifolium.campestre Trifolium.dubium
## 0.465 0.275
## Trifolium.pratense Trifolium.repens
## 0.201 0.637
## Trisetum.flavescens Tussilago.farfara
## 0.659 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Pilosella officinarum has a high indval score of 0.775 and a low p value of 0.001. Pilosella #officinarum is the indicator species for Cuspidine.
clustDiaspore <-cut(PlantChemistry1$Diaspore, 5, labels=FALSE)
DiasporeIndval <- indval(as.matrix(PlantSpecies1), clustDiaspore, type= "long")
gr <- DiasporeIndval$maxcls[DiasporeIndval$pval<=0.05]
iv <- DiasporeIndval$indcls[DiasporeIndval$pval<=0.05]
pv <- DiasporeIndval$pval[DiasporeIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[DiasporeIndval$pval<=0.05]
DiasporeIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
DiasporeIndvalsummary <- DiasporeIndvalsummary[order(DiasporeIndvalsummary$group,
-DiasporeIndvalsummary$indval),]
print(DiasporeIndvalsummary)
## group indval pvalue freq
## Hieracium.spp. 2 1.0000000 0.025 21
## Daucus.carrota 2 0.9876543 0.033 1
## Leontodon.hispidus 2 0.9382330 0.041 1
## Pseudoscleropidum.purum 2 0.9288824 0.024 3
summary(indval(as.matrix(PlantSpecies1), clustDiaspore))
## cluster indicator_value probability
## Hieracium.spp. 2 1.0000 0.022
## Daucus.carrota 2 0.9877 0.030
## Leontodon.hispidus 2 0.9382 0.044
## Pseudoscleropidum.purum 2 0.9289 0.028
## Trisetum.flavescens 2 0.4898 0.043
##
## Sum of probabilities = 129.061
##
## Sum of Indicator Values = 20.11
##
## Sum of Significant Indicator Values = 4.34
##
## Number of Significant Indicators = 5
##
## Significant Indicator Distribution
##
## 2
## 5
print(indval(as.matrix(PlantSpecies1), clustDiaspore))
## $relfrq
## 1 5
## Agrostis.spp. 0.200 0
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.025 0
## Alopercus.pratensis 0.025 0
## Angelica.sylvestris 0.050 0
## Anthoxanthum.odoratum 0.150 0
## Anthyllis.vulneraria 0.100 1
## Aphanes.arvensis 0.075 0
## Arrhenatherum.elatius 0.200 0
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.025 0
## Bellis.perennis 0.275 1
## Betula.pubescens 0.025 0
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.100 0
## Brachythecium.rutabulum 0.150 0
## Briza.media 0.050 1
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.025 0
## Bryum.c.f..pallescens 0.075 0
## Bryum.capillare 0.025 0
## Bryum.spp. 0.075 0
## Calliergonella.cupsidata 0.375 0
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.025 0
## Carex.distans 0.050 0
## Carex.flacca 0.175 0
## Carex.panicea 0.025 0
## Carlina.vulgaris 0.250 0
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.100 0
## Centaurium.pulchellum 0.025 0
## Cerastium.fontanum 0.150 1
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.025 0
## Cirsium.arvense 0.075 0
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.050 0
## Cynosurus.cristatus 0.075 0
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.025 1
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.125 0
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.075 0
## Equisteum.variegatum 0.025 0
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.275 0
## Festuca.ovina 0.150 1
## Festuca.rubra 0.350 1
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.075 0
## Fissidens.adianthoides 0.025 0
## Fissidens.dubius 0.050 0
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.150 0
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.075 1
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.000 1
## Holcus.spp. 0.500 1
## Holcus.lanatus 0.275 1
## Holcus.mollis 0.150 0
## Homalothecium.lutescens 0.050 0
## Hylocomium.splendens 0.175 0
## Hypericum.perforatum 0.150 0
## Hypnum.cupressiforme 0.250 0
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.025 0
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.075 0
## Leontodon.hispidus 0.100 1
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.325 1
## Linum.catharticum 0.125 0
## Lolium.perenne 0.100 0
## Lophocolea.semiteres 0.025 0
## Lotus.corniculatus 0.425 1
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.050 0
## Medicago.lupulina 0.125 0
## Myosotis.arvensis 0.125 0
## Ononis.repens 0.200 0
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.275 1
## Plantago.coronopus 0.100 0
## Plantago.lanceolata 0.300 1
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.075 0
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.100 0
## Prunella.vulgaris 0.125 0
## Pseudoscleropidum.purum 0.175 1
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.075 0
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.325 0
## Rhytidadelphus.triquetris 0.050 0
## Rubus.fruticosus 0.050 0
## Sanguisorba.minor.spp.minor 0.050 0
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.050 0
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.050 0
## Stellaria.apetala 0.025 0
## Taraxacum.agg. 0.275 0
## Thuidium.tamariscinum 0.075 0
## Thymus.polytrichus 0.200 0
## Trichostomum.crispulum 0.150 0
## Trifolium.campestre 0.150 1
## Trifolium.dubium 0.050 0
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.125 0
## Trisetum.flavescens 0.075 1
## Tussilago.farfara 0.075 0
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.025 0
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.025 0
## Zygodon.stirtonii 0.025 0
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.0000000
## Agrostis.canina 1.00000000 0.0000000
## Alchemilla.mollis 1.00000000 0.0000000
## Alopercus.pratensis 1.00000000 0.0000000
## Angelica.sylvestris 1.00000000 0.0000000
## Anthoxanthum.odoratum 1.00000000 0.0000000
## Anthyllis.vulneraria 0.23353293 0.7664671
## Aphanes.arvensis 1.00000000 0.0000000
## Arrhenatherum.elatius 1.00000000 0.0000000
## Atrichum.undulatum 1.00000000 0.0000000
## Avenula.pratensis 1.00000000 0.0000000
## Bellis.perennis 0.21052632 0.7894737
## Betula.pubescens 1.00000000 0.0000000
## Blackstonia.perfoliata 1.00000000 0.0000000
## Brachythecium.albicans 1.00000000 0.0000000
## Brachythecium.glareosum 1.00000000 0.0000000
## Brachythecium.mildeanum 1.00000000 0.0000000
## Brachythecium.rutabulum 1.00000000 0.0000000
## Briza.media 0.31477516 0.6852248
## Bromus.hordeaceus 1.00000000 0.0000000
## Bryum.c.f..caespiticium 1.00000000 0.0000000
## Bryum.c.f..pallescens 1.00000000 0.0000000
## Bryum.capillare 1.00000000 0.0000000
## Bryum.spp. 1.00000000 0.0000000
## Calliergonella.cupsidata 1.00000000 0.0000000
## Calypogeia.arguta 1.00000000 0.0000000
## Campanula.rotundifolia 1.00000000 0.0000000
## Carex.distans 1.00000000 0.0000000
## Carex.flacca 1.00000000 0.0000000
## Carex.panicea 1.00000000 0.0000000
## Carlina.vulgaris 1.00000000 0.0000000
## Centaurea.nigra 1.00000000 0.0000000
## Centaurium.erythraea 1.00000000 0.0000000
## Centaurium.littorale 1.00000000 0.0000000
## Centaurium.pulchellum 1.00000000 0.0000000
## Cerastium.fontanum 0.23076923 0.7692308
## Chamaenerion.angustifolium 1.00000000 0.0000000
## Cirriphyllum.piliferum 1.00000000 0.0000000
## Cirsium.arvense 1.00000000 0.0000000
## Cirsium.palustre 1.00000000 0.0000000
## Crepis.capillaris 1.00000000 0.0000000
## Cynosurus.cristatus 1.00000000 0.0000000
## Dactylis.glomerata 1.00000000 0.0000000
## Dactylorhiza.fuchsii 1.00000000 0.0000000
## Danthonia.decumbens 1.00000000 0.0000000
## Daucus.carrota 0.01234568 0.9876543
## Dicranella.spp. 1.00000000 0.0000000
## Dicranum.scoparium 1.00000000 0.0000000
## Epilobium.montanum 1.00000000 0.0000000
## Equisetum.arvense 1.00000000 0.0000000
## Equisteum.variegatum 1.00000000 0.0000000
## Erigeron.acer 1.00000000 0.0000000
## Euphrasia.agg 1.00000000 0.0000000
## Festuca.ovina 0.70909091 0.2909091
## Festuca.rubra 0.82378855 0.1762115
## Festuca.rubra.agg. 1.00000000 0.0000000
## Filipendula.ulmaria 1.00000000 0.0000000
## Fissidens.adianthoides 1.00000000 0.0000000
## Fissidens.dubius 1.00000000 0.0000000
## Fissidens.exilis 1.00000000 0.0000000
## Fragaria.vesca 1.00000000 0.0000000
## Galium.aparine 1.00000000 0.0000000
## Galium.arvense 1.00000000 0.0000000
## Galium.saxatile 1.00000000 0.0000000
## Galium.verum 0.81566820 0.1843318
## Geum.urbanum 1.00000000 0.0000000
## Glechoma.hederacea 1.00000000 0.0000000
## Helicotrichon.spp. 1.00000000 0.0000000
## Heracleum.sphondylium 1.00000000 0.0000000
## Hieracium.spp. 0.00000000 1.0000000
## Holcus.spp. 0.87742594 0.1225741
## Holcus.lanatus 0.74921630 0.2507837
## Holcus.mollis 1.00000000 0.0000000
## Homalothecium.lutescens 1.00000000 0.0000000
## Hylocomium.splendens 1.00000000 0.0000000
## Hypericum.perforatum 1.00000000 0.0000000
## Hypnum.cupressiforme 1.00000000 0.0000000
## Hypnum.imponens 1.00000000 0.0000000
## Hypnum.jutlandicum 1.00000000 0.0000000
## Hypochaeris.radicata 1.00000000 0.0000000
## Kindbergia.praelonga 1.00000000 0.0000000
## Lathyrus.pratensis 1.00000000 0.0000000
## Leontodon.hispidus 0.06176701 0.9382330
## Leontodon.saxatilis 1.00000000 0.0000000
## Leucanthemum.vulgare 0.44186047 0.5581395
## Linum.catharticum 1.00000000 0.0000000
## Lolium.perenne 1.00000000 0.0000000
## Lophocolea.semiteres 1.00000000 0.0000000
## Lotus.corniculatus 0.67501693 0.3249831
## Luzula.multiflora 1.00000000 0.0000000
## Lysimachia.maritima 1.00000000 0.0000000
## Medicago.lupulina 1.00000000 0.0000000
## Myosotis.arvensis 1.00000000 0.0000000
## Ononis.repens 1.00000000 0.0000000
## Oxalis.acetosella 1.00000000 0.0000000
## Pastinaca.sativa 1.00000000 0.0000000
## Pentaglottis.sempervirens 1.00000000 0.0000000
## Pillosella.officinarum 0.77369165 0.2263083
## Plantago.coronopus 1.00000000 0.0000000
## Plantago.lanceolata 0.54198473 0.4580153
## Pleurozium.schreberi 1.00000000 0.0000000
## Poa.annua 1.00000000 0.0000000
## Poa.spp. 1.00000000 0.0000000
## Polytrichum.commune 1.00000000 0.0000000
## Polytrichum.commune.agg. 1.00000000 0.0000000
## Polytrichum.formosum 1.00000000 0.0000000
## Potentilla.reptans 1.00000000 0.0000000
## Prunella.vulgaris 1.00000000 0.0000000
## Pseudoscleropidum.purum 0.07111756 0.9288824
## Pteridium.aquilinum 1.00000000 0.0000000
## Ranunculus.acris 1.00000000 0.0000000
## Ranunculus.repens 1.00000000 0.0000000
## Reseda.lutea 1.00000000 0.0000000
## Rhinanthus.minor 1.00000000 0.0000000
## Rhizomnium.punctatum 1.00000000 0.0000000
## Rhytidadelphus.squarrosus 1.00000000 0.0000000
## Rhytidadelphus.triquetris 1.00000000 0.0000000
## Rubus.fruticosus 1.00000000 0.0000000
## Sanguisorba.minor.spp.minor 1.00000000 0.0000000
## Saniona.uncinata 1.00000000 0.0000000
## Sedum.anglicum 1.00000000 0.0000000
## Senecio.jacobaea 1.00000000 0.0000000
## Senecio.vulgaris 1.00000000 0.0000000
## Sonchus.arvensis 1.00000000 0.0000000
## Stachys.sylvatica 1.00000000 0.0000000
## Stellaria.apetala 1.00000000 0.0000000
## Taraxacum.agg. 1.00000000 0.0000000
## Thuidium.tamariscinum 1.00000000 0.0000000
## Thymus.polytrichus 1.00000000 0.0000000
## Trichostomum.crispulum 1.00000000 0.0000000
## Trifolium.campestre 0.58974359 0.4102564
## Trifolium.dubium 1.00000000 0.0000000
## Trifolium.pratense 1.00000000 0.0000000
## Trifolium.repens 1.00000000 0.0000000
## Trisetum.flavescens 0.51020408 0.4897959
## Tussilago.farfara 1.00000000 0.0000000
## Urtica.diocia 1.00000000 0.0000000
## Veronica.officinalis 1.00000000 0.0000000
## Vicia.sativa 1.00000000 0.0000000
## Viola.riviniana 1.00000000 0.0000000
## Weissia.controversa 1.00000000 0.0000000
## Zygodon.stirtonii 1.00000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.200000000 0.0000000
## Agrostis.canina 0.025000000 0.0000000
## Alchemilla.mollis 0.025000000 0.0000000
## Alopercus.pratensis 0.025000000 0.0000000
## Angelica.sylvestris 0.050000000 0.0000000
## Anthoxanthum.odoratum 0.150000000 0.0000000
## Anthyllis.vulneraria 0.023353293 0.7664671
## Aphanes.arvensis 0.075000000 0.0000000
## Arrhenatherum.elatius 0.200000000 0.0000000
## Atrichum.undulatum 0.050000000 0.0000000
## Avenula.pratensis 0.025000000 0.0000000
## Bellis.perennis 0.057894737 0.7894737
## Betula.pubescens 0.025000000 0.0000000
## Blackstonia.perfoliata 0.025000000 0.0000000
## Brachythecium.albicans 0.025000000 0.0000000
## Brachythecium.glareosum 0.025000000 0.0000000
## Brachythecium.mildeanum 0.100000000 0.0000000
## Brachythecium.rutabulum 0.150000000 0.0000000
## Briza.media 0.015738758 0.6852248
## Bromus.hordeaceus 0.025000000 0.0000000
## Bryum.c.f..caespiticium 0.025000000 0.0000000
## Bryum.c.f..pallescens 0.075000000 0.0000000
## Bryum.capillare 0.025000000 0.0000000
## Bryum.spp. 0.075000000 0.0000000
## Calliergonella.cupsidata 0.375000000 0.0000000
## Calypogeia.arguta 0.200000000 0.0000000
## Campanula.rotundifolia 0.025000000 0.0000000
## Carex.distans 0.050000000 0.0000000
## Carex.flacca 0.175000000 0.0000000
## Carex.panicea 0.025000000 0.0000000
## Carlina.vulgaris 0.250000000 0.0000000
## Centaurea.nigra 0.050000000 0.0000000
## Centaurium.erythraea 0.050000000 0.0000000
## Centaurium.littorale 0.100000000 0.0000000
## Centaurium.pulchellum 0.025000000 0.0000000
## Cerastium.fontanum 0.034615385 0.7692308
## Chamaenerion.angustifolium 0.025000000 0.0000000
## Cirriphyllum.piliferum 0.025000000 0.0000000
## Cirsium.arvense 0.075000000 0.0000000
## Cirsium.palustre 0.050000000 0.0000000
## Crepis.capillaris 0.050000000 0.0000000
## Cynosurus.cristatus 0.075000000 0.0000000
## Dactylis.glomerata 0.150000000 0.0000000
## Dactylorhiza.fuchsii 0.050000000 0.0000000
## Danthonia.decumbens 0.025000000 0.0000000
## Daucus.carrota 0.000308642 0.9876543
## Dicranella.spp. 0.025000000 0.0000000
## Dicranum.scoparium 0.125000000 0.0000000
## Epilobium.montanum 0.075000000 0.0000000
## Equisetum.arvense 0.075000000 0.0000000
## Equisteum.variegatum 0.025000000 0.0000000
## Erigeron.acer 0.050000000 0.0000000
## Euphrasia.agg 0.275000000 0.0000000
## Festuca.ovina 0.106363636 0.2909091
## Festuca.rubra 0.288325991 0.1762115
## Festuca.rubra.agg. 0.025000000 0.0000000
## Filipendula.ulmaria 0.075000000 0.0000000
## Fissidens.adianthoides 0.025000000 0.0000000
## Fissidens.dubius 0.050000000 0.0000000
## Fissidens.exilis 0.025000000 0.0000000
## Fragaria.vesca 0.150000000 0.0000000
## Galium.aparine 0.025000000 0.0000000
## Galium.arvense 0.025000000 0.0000000
## Galium.saxatile 0.025000000 0.0000000
## Galium.verum 0.061175115 0.1843318
## Geum.urbanum 0.025000000 0.0000000
## Glechoma.hederacea 0.025000000 0.0000000
## Helicotrichon.spp. 0.025000000 0.0000000
## Heracleum.sphondylium 0.075000000 0.0000000
## Hieracium.spp. 0.000000000 1.0000000
## Holcus.spp. 0.438712972 0.1225741
## Holcus.lanatus 0.206034483 0.2507837
## Holcus.mollis 0.150000000 0.0000000
## Homalothecium.lutescens 0.050000000 0.0000000
## Hylocomium.splendens 0.175000000 0.0000000
## Hypericum.perforatum 0.150000000 0.0000000
## Hypnum.cupressiforme 0.250000000 0.0000000
## Hypnum.imponens 0.025000000 0.0000000
## Hypnum.jutlandicum 0.075000000 0.0000000
## Hypochaeris.radicata 0.025000000 0.0000000
## Kindbergia.praelonga 0.150000000 0.0000000
## Lathyrus.pratensis 0.075000000 0.0000000
## Leontodon.hispidus 0.006176701 0.9382330
## Leontodon.saxatilis 0.025000000 0.0000000
## Leucanthemum.vulgare 0.143604651 0.5581395
## Linum.catharticum 0.125000000 0.0000000
## Lolium.perenne 0.100000000 0.0000000
## Lophocolea.semiteres 0.025000000 0.0000000
## Lotus.corniculatus 0.286882194 0.3249831
## Luzula.multiflora 0.025000000 0.0000000
## Lysimachia.maritima 0.050000000 0.0000000
## Medicago.lupulina 0.125000000 0.0000000
## Myosotis.arvensis 0.125000000 0.0000000
## Ononis.repens 0.200000000 0.0000000
## Oxalis.acetosella 0.025000000 0.0000000
## Pastinaca.sativa 0.025000000 0.0000000
## Pentaglottis.sempervirens 0.025000000 0.0000000
## Pillosella.officinarum 0.212765205 0.2263083
## Plantago.coronopus 0.100000000 0.0000000
## Plantago.lanceolata 0.162595420 0.4580153
## Pleurozium.schreberi 0.100000000 0.0000000
## Poa.annua 0.075000000 0.0000000
## Poa.spp. 0.025000000 0.0000000
## Polytrichum.commune 0.025000000 0.0000000
## Polytrichum.commune.agg. 0.025000000 0.0000000
## Polytrichum.formosum 0.025000000 0.0000000
## Potentilla.reptans 0.100000000 0.0000000
## Prunella.vulgaris 0.125000000 0.0000000
## Pseudoscleropidum.purum 0.012445573 0.9288824
## Pteridium.aquilinum 0.075000000 0.0000000
## Ranunculus.acris 0.025000000 0.0000000
## Ranunculus.repens 0.075000000 0.0000000
## Reseda.lutea 0.025000000 0.0000000
## Rhinanthus.minor 0.025000000 0.0000000
## Rhizomnium.punctatum 0.025000000 0.0000000
## Rhytidadelphus.squarrosus 0.325000000 0.0000000
## Rhytidadelphus.triquetris 0.050000000 0.0000000
## Rubus.fruticosus 0.050000000 0.0000000
## Sanguisorba.minor.spp.minor 0.050000000 0.0000000
## Saniona.uncinata 0.050000000 0.0000000
## Sedum.anglicum 0.025000000 0.0000000
## Senecio.jacobaea 0.050000000 0.0000000
## Senecio.vulgaris 0.025000000 0.0000000
## Sonchus.arvensis 0.025000000 0.0000000
## Stachys.sylvatica 0.050000000 0.0000000
## Stellaria.apetala 0.025000000 0.0000000
## Taraxacum.agg. 0.275000000 0.0000000
## Thuidium.tamariscinum 0.075000000 0.0000000
## Thymus.polytrichus 0.200000000 0.0000000
## Trichostomum.crispulum 0.150000000 0.0000000
## Trifolium.campestre 0.088461538 0.4102564
## Trifolium.dubium 0.050000000 0.0000000
## Trifolium.pratense 0.100000000 0.0000000
## Trifolium.repens 0.125000000 0.0000000
## Trisetum.flavescens 0.038265306 0.4897959
## Tussilago.farfara 0.075000000 0.0000000
## Urtica.diocia 0.100000000 0.0000000
## Veronica.officinalis 0.025000000 0.0000000
## Vicia.sativa 0.025000000 0.0000000
## Viola.riviniana 0.025000000 0.0000000
## Weissia.controversa 0.025000000 0.0000000
## Zygodon.stirtonii 0.025000000 0.0000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 2 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 2
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 2 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 2
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 2
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 2 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 2
## Holcus.spp. Holcus.lanatus
## 1 2
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 2 1
## Leucanthemum.vulgare Linum.catharticum
## 2 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 2 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 2
## Plantago.coronopus Plantago.lanceolata
## 1 2
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 2 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 2 1
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 2 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.2000000 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 0.0250000 0.0250000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.0500000 0.1500000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.7664671 0.0750000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.2000000 0.0500000
## Avenula.pratensis Bellis.perennis
## 0.0250000 0.7894737
## Betula.pubescens Blackstonia.perfoliata
## 0.0250000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.1000000 0.1500000
## Briza.media Bromus.hordeaceus
## 0.6852248 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.0250000 0.0750000
## Bryum.capillare Bryum.spp.
## 0.0250000 0.0750000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.3750000 0.2000000
## Campanula.rotundifolia Carex.distans
## 0.0250000 0.0500000
## Carex.flacca Carex.panicea
## 0.1750000 0.0250000
## Carlina.vulgaris Centaurea.nigra
## 0.2500000 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.1000000
## Centaurium.pulchellum Cerastium.fontanum
## 0.0250000 0.7692308
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 0.0250000
## Cirsium.arvense Cirsium.palustre
## 0.0750000 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.0500000 0.0750000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.9876543
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.1250000
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.0750000
## Equisteum.variegatum Erigeron.acer
## 0.0250000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.2750000 0.2909091
## Festuca.rubra Festuca.rubra.agg.
## 0.2883260 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.0750000 0.0250000
## Fissidens.dubius Fissidens.exilis
## 0.0500000 0.0250000
## Fragaria.vesca Galium.aparine
## 0.1500000 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.1843318 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 1.0000000
## Holcus.spp. Holcus.lanatus
## 0.4387130 0.2507837
## Holcus.mollis Homalothecium.lutescens
## 0.1500000 0.0500000
## Hylocomium.splendens Hypericum.perforatum
## 0.1750000 0.1500000
## Hypnum.cupressiforme Hypnum.imponens
## 0.2500000 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 0.0250000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.0750000
## Leontodon.hispidus Leontodon.saxatilis
## 0.9382330 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.5581395 0.1250000
## Lolium.perenne Lophocolea.semiteres
## 0.1000000 0.0250000
## Lotus.corniculatus Luzula.multiflora
## 0.3249831 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.0500000 0.1250000
## Myosotis.arvensis Ononis.repens
## 0.1250000 0.2000000
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.2263083
## Plantago.coronopus Plantago.lanceolata
## 0.1000000 0.4580153
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.0750000
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.1000000 0.1250000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.9288824 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.0750000
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.3250000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.0500000 0.0500000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.0500000 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.0500000
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.0500000 0.0250000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.2750000 0.0750000
## Thymus.polytrichus Trichostomum.crispulum
## 0.2000000 0.1500000
## Trifolium.campestre Trifolium.dubium
## 0.4102564 0.0500000
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.1250000
## Trisetum.flavescens Tussilago.farfara
## 0.4897959 0.0750000
## Urtica.diocia Veronica.officinalis
## 0.1000000 0.0250000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 0.0250000 0.0250000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1.000 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.105 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 1.000 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.170
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 0.065 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.897 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.974 1.000
## Carlina.vulgaris Centaurea.nigra
## 1.000 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.182
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 0.021
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.949 0.164
## Festuca.rubra Festuca.rubra.agg.
## 1.000 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 0.081 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 0.017
## Holcus.spp. Holcus.lanatus
## 0.869 0.980
## Holcus.mollis Homalothecium.lutescens
## 0.976 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.986 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 1.000 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 0.055 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.169 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 1.000 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.908
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.978
## Plantago.coronopus Plantago.lanceolata
## 1.000 0.253
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.032 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 1.000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 1.000 1.000
## Trifolium.campestre Trifolium.dubium
## 0.167 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 1.000
## Trisetum.flavescens Tussilago.farfara
## 0.055 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Hieracium spp. has a high indval score of 1 and a low p value of 0.026. This species is #the indicator species for Diaspore.
clustDickite <-cut(PlantChemistry1$Dickite, 5, labels=FALSE)
DickiteIndval <- indval(as.matrix(PlantSpecies1), clustDickite, type= "long")
gr <- DickiteIndval$maxcls[DickiteIndval$pval<=0.05]
iv <- DickiteIndval$indcls[DickiteIndval$pval<=0.05]
pv <- DickiteIndval$pval[DickiteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[DickiteIndval$pval<=0.05]
DickiteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
DickiteIndvalsummary <- DickiteIndvalsummary[order(DickiteIndvalsummary$group,
-DickiteIndvalsummary$indval),]
print(DickiteIndvalsummary)
## group indval pvalue freq
## Hypnum.jutlandicum 2 0.6586667 0.012 1
## Plantago.lanceolata 2 0.5643882 0.042 4
summary(indval(as.matrix(PlantSpecies1), clustDickite))
## cluster indicator_value probability
## Hypnum.jutlandicum 2 0.6587 0.011
## Plantago.lanceolata 2 0.5644 0.040
##
## Sum of probabilities = 112.097
##
## Sum of Indicator Values = 17.81
##
## Sum of Significant Indicator Values = 1.22
##
## Number of Significant Indicators = 2
##
## Significant Indicator Distribution
##
## 2
## 2
print(indval(as.matrix(PlantSpecies1), clustDickite))
## $relfrq
## 1 5
## Agrostis.spp. 0.18421053 0.3333333
## Agrostis.canina 0.02631579 0.0000000
## Alchemilla.mollis 0.02631579 0.0000000
## Alopercus.pratensis 0.02631579 0.0000000
## Angelica.sylvestris 0.05263158 0.0000000
## Anthoxanthum.odoratum 0.13157895 0.3333333
## Anthyllis.vulneraria 0.13157895 0.0000000
## Aphanes.arvensis 0.05263158 0.3333333
## Arrhenatherum.elatius 0.18421053 0.3333333
## Atrichum.undulatum 0.02631579 0.3333333
## Avenula.pratensis 0.02631579 0.0000000
## Bellis.perennis 0.31578947 0.0000000
## Betula.pubescens 0.02631579 0.0000000
## Blackstonia.perfoliata 0.02631579 0.0000000
## Brachythecium.albicans 0.02631579 0.0000000
## Brachythecium.glareosum 0.02631579 0.0000000
## Brachythecium.mildeanum 0.07894737 0.3333333
## Brachythecium.rutabulum 0.13157895 0.3333333
## Briza.media 0.07894737 0.0000000
## Bromus.hordeaceus 0.02631579 0.0000000
## Bryum.c.f..caespiticium 0.02631579 0.0000000
## Bryum.c.f..pallescens 0.07894737 0.0000000
## Bryum.capillare 0.02631579 0.0000000
## Bryum.spp. 0.07894737 0.0000000
## Calliergonella.cupsidata 0.36842105 0.3333333
## Calypogeia.arguta 0.15789474 0.6666667
## Campanula.rotundifolia 0.02631579 0.0000000
## Carex.distans 0.05263158 0.0000000
## Carex.flacca 0.15789474 0.3333333
## Carex.panicea 0.02631579 0.0000000
## Carlina.vulgaris 0.23684211 0.3333333
## Centaurea.nigra 0.05263158 0.0000000
## Centaurium.erythraea 0.05263158 0.0000000
## Centaurium.littorale 0.10526316 0.0000000
## Centaurium.pulchellum 0.02631579 0.0000000
## Cerastium.fontanum 0.18421053 0.0000000
## Chamaenerion.angustifolium 0.02631579 0.0000000
## Cirriphyllum.piliferum 0.02631579 0.0000000
## Cirsium.arvense 0.07894737 0.0000000
## Cirsium.palustre 0.05263158 0.0000000
## Crepis.capillaris 0.05263158 0.0000000
## Cynosurus.cristatus 0.05263158 0.3333333
## Dactylis.glomerata 0.13157895 0.3333333
## Dactylorhiza.fuchsii 0.02631579 0.3333333
## Danthonia.decumbens 0.00000000 0.3333333
## Daucus.carrota 0.05263158 0.0000000
## Dicranella.spp. 0.02631579 0.0000000
## Dicranum.scoparium 0.10526316 0.3333333
## Epilobium.montanum 0.07894737 0.0000000
## Equisetum.arvense 0.07894737 0.0000000
## Equisteum.variegatum 0.02631579 0.0000000
## Erigeron.acer 0.05263158 0.0000000
## Euphrasia.agg 0.26315789 0.3333333
## Festuca.ovina 0.18421053 0.0000000
## Festuca.rubra 0.39473684 0.0000000
## Festuca.rubra.agg. 0.02631579 0.0000000
## Filipendula.ulmaria 0.07894737 0.0000000
## Fissidens.adianthoides 0.02631579 0.0000000
## Fissidens.dubius 0.05263158 0.0000000
## Fissidens.exilis 0.02631579 0.0000000
## Fragaria.vesca 0.13157895 0.3333333
## Galium.aparine 0.02631579 0.0000000
## Galium.arvense 0.02631579 0.0000000
## Galium.saxatile 0.02631579 0.0000000
## Galium.verum 0.10526316 0.0000000
## Geum.urbanum 0.02631579 0.0000000
## Glechoma.hederacea 0.02631579 0.0000000
## Helicotrichon.spp. 0.02631579 0.0000000
## Heracleum.sphondylium 0.05263158 0.3333333
## Hieracium.spp. 0.02631579 0.0000000
## Holcus.spp. 0.52631579 0.3333333
## Holcus.lanatus 0.28947368 0.3333333
## Holcus.mollis 0.13157895 0.3333333
## Homalothecium.lutescens 0.05263158 0.0000000
## Hylocomium.splendens 0.15789474 0.3333333
## Hypericum.perforatum 0.13157895 0.3333333
## Hypnum.cupressiforme 0.21052632 0.6666667
## Hypnum.imponens 0.02631579 0.0000000
## Hypnum.jutlandicum 0.02631579 0.6666667
## Hypochaeris.radicata 0.02631579 0.0000000
## Kindbergia.praelonga 0.13157895 0.3333333
## Lathyrus.pratensis 0.05263158 0.3333333
## Leontodon.hispidus 0.10526316 0.3333333
## Leontodon.saxatilis 0.02631579 0.0000000
## Leucanthemum.vulgare 0.34210526 0.3333333
## Linum.catharticum 0.10526316 0.3333333
## Lolium.perenne 0.10526316 0.0000000
## Lophocolea.semiteres 0.02631579 0.0000000
## Lotus.corniculatus 0.47368421 0.0000000
## Luzula.multiflora 0.02631579 0.0000000
## Lysimachia.maritima 0.05263158 0.0000000
## Medicago.lupulina 0.13157895 0.0000000
## Myosotis.arvensis 0.13157895 0.0000000
## Ononis.repens 0.18421053 0.3333333
## Oxalis.acetosella 0.02631579 0.0000000
## Pastinaca.sativa 0.02631579 0.0000000
## Pentaglottis.sempervirens 0.02631579 0.0000000
## Pillosella.officinarum 0.31578947 0.0000000
## Plantago.coronopus 0.10526316 0.0000000
## Plantago.lanceolata 0.28947368 0.6666667
## Pleurozium.schreberi 0.07894737 0.3333333
## Poa.annua 0.07894737 0.0000000
## Poa.spp. 0.02631579 0.0000000
## Polytrichum.commune 0.02631579 0.0000000
## Polytrichum.commune.agg. 0.02631579 0.0000000
## Polytrichum.formosum 0.02631579 0.0000000
## Potentilla.reptans 0.07894737 0.3333333
## Prunella.vulgaris 0.13157895 0.0000000
## Pseudoscleropidum.purum 0.18421053 0.3333333
## Pteridium.aquilinum 0.07894737 0.0000000
## Ranunculus.acris 0.00000000 0.3333333
## Ranunculus.repens 0.07894737 0.0000000
## Reseda.lutea 0.02631579 0.0000000
## Rhinanthus.minor 0.00000000 0.3333333
## Rhizomnium.punctatum 0.02631579 0.0000000
## Rhytidadelphus.squarrosus 0.31578947 0.3333333
## Rhytidadelphus.triquetris 0.05263158 0.0000000
## Rubus.fruticosus 0.05263158 0.0000000
## Sanguisorba.minor.spp.minor 0.05263158 0.0000000
## Saniona.uncinata 0.05263158 0.0000000
## Sedum.anglicum 0.02631579 0.0000000
## Senecio.jacobaea 0.05263158 0.0000000
## Senecio.vulgaris 0.02631579 0.0000000
## Sonchus.arvensis 0.02631579 0.0000000
## Stachys.sylvatica 0.05263158 0.0000000
## Stellaria.apetala 0.02631579 0.0000000
## Taraxacum.agg. 0.26315789 0.3333333
## Thuidium.tamariscinum 0.07894737 0.0000000
## Thymus.polytrichus 0.18421053 0.3333333
## Trichostomum.crispulum 0.15789474 0.0000000
## Trifolium.campestre 0.18421053 0.0000000
## Trifolium.dubium 0.05263158 0.0000000
## Trifolium.pratense 0.07894737 0.3333333
## Trifolium.repens 0.13157895 0.0000000
## Trisetum.flavescens 0.10526316 0.0000000
## Tussilago.farfara 0.07894737 0.0000000
## Urtica.diocia 0.07894737 0.3333333
## Veronica.officinalis 0.02631579 0.0000000
## Vicia.sativa 0.02631579 0.0000000
## Viola.riviniana 0.02631579 0.0000000
## Weissia.controversa 0.02631579 0.0000000
## Zygodon.stirtonii 0.00000000 0.3333333
##
## $relabu
## 1 5
## Agrostis.spp. 0.33665835 0.66334165
## Agrostis.canina 1.00000000 0.00000000
## Alchemilla.mollis 1.00000000 0.00000000
## Alopercus.pratensis 1.00000000 0.00000000
## Angelica.sylvestris 1.00000000 0.00000000
## Anthoxanthum.odoratum 0.21956684 0.78043316
## Anthyllis.vulneraria 1.00000000 0.00000000
## Aphanes.arvensis 0.04128440 0.95871560
## Arrhenatherum.elatius 0.04316547 0.95683453
## Atrichum.undulatum 0.07317073 0.92682927
## Avenula.pratensis 1.00000000 0.00000000
## Bellis.perennis 1.00000000 0.00000000
## Betula.pubescens 1.00000000 0.00000000
## Blackstonia.perfoliata 1.00000000 0.00000000
## Brachythecium.albicans 1.00000000 0.00000000
## Brachythecium.glareosum 1.00000000 0.00000000
## Brachythecium.mildeanum 0.05472637 0.94527363
## Brachythecium.rutabulum 0.35593220 0.64406780
## Briza.media 1.00000000 0.00000000
## Bromus.hordeaceus 1.00000000 0.00000000
## Bryum.c.f..caespiticium 1.00000000 0.00000000
## Bryum.c.f..pallescens 1.00000000 0.00000000
## Bryum.capillare 1.00000000 0.00000000
## Bryum.spp. 1.00000000 0.00000000
## Calliergonella.cupsidata 0.69600000 0.30400000
## Calypogeia.arguta 0.45907473 0.54092527
## Campanula.rotundifolia 1.00000000 0.00000000
## Carex.distans 1.00000000 0.00000000
## Carex.flacca 0.62500000 0.37500000
## Carex.panicea 1.00000000 0.00000000
## Carlina.vulgaris 0.76829268 0.23170732
## Centaurea.nigra 1.00000000 0.00000000
## Centaurium.erythraea 1.00000000 0.00000000
## Centaurium.littorale 1.00000000 0.00000000
## Centaurium.pulchellum 1.00000000 0.00000000
## Cerastium.fontanum 1.00000000 0.00000000
## Chamaenerion.angustifolium 1.00000000 0.00000000
## Cirriphyllum.piliferum 1.00000000 0.00000000
## Cirsium.arvense 1.00000000 0.00000000
## Cirsium.palustre 1.00000000 0.00000000
## Crepis.capillaris 1.00000000 0.00000000
## Cynosurus.cristatus 0.25398773 0.74601227
## Dactylis.glomerata 0.31531532 0.68468468
## Dactylorhiza.fuchsii 0.63461538 0.36538462
## Danthonia.decumbens 0.00000000 1.00000000
## Daucus.carrota 1.00000000 0.00000000
## Dicranella.spp. 1.00000000 0.00000000
## Dicranum.scoparium 0.35181237 0.64818763
## Epilobium.montanum 1.00000000 0.00000000
## Equisetum.arvense 1.00000000 0.00000000
## Equisteum.variegatum 1.00000000 0.00000000
## Erigeron.acer 1.00000000 0.00000000
## Euphrasia.agg 0.90452261 0.09547739
## Festuca.ovina 1.00000000 0.00000000
## Festuca.rubra 1.00000000 0.00000000
## Festuca.rubra.agg. 1.00000000 0.00000000
## Filipendula.ulmaria 1.00000000 0.00000000
## Fissidens.adianthoides 1.00000000 0.00000000
## Fissidens.dubius 1.00000000 0.00000000
## Fissidens.exilis 1.00000000 0.00000000
## Fragaria.vesca 0.25704428 0.74295572
## Galium.aparine 1.00000000 0.00000000
## Galium.arvense 1.00000000 0.00000000
## Galium.saxatile 1.00000000 0.00000000
## Galium.verum 1.00000000 0.00000000
## Geum.urbanum 1.00000000 0.00000000
## Glechoma.hederacea 1.00000000 0.00000000
## Helicotrichon.spp. 1.00000000 0.00000000
## Heracleum.sphondylium 0.41538462 0.58461538
## Hieracium.spp. 1.00000000 0.00000000
## Holcus.spp. 0.44243792 0.55756208
## Holcus.lanatus 0.31013616 0.68986384
## Holcus.mollis 0.94780220 0.05219780
## Homalothecium.lutescens 1.00000000 0.00000000
## Hylocomium.splendens 0.30104231 0.69895769
## Hypericum.perforatum 0.83259912 0.16740088
## Hypnum.cupressiforme 0.37411765 0.62588235
## Hypnum.imponens 1.00000000 0.00000000
## Hypnum.jutlandicum 0.01200000 0.98800000
## Hypochaeris.radicata 1.00000000 0.00000000
## Kindbergia.praelonga 0.61224490 0.38775510
## Lathyrus.pratensis 0.24000000 0.76000000
## Leontodon.hispidus 0.80856423 0.19143577
## Leontodon.saxatilis 1.00000000 0.00000000
## Leucanthemum.vulgare 0.88449848 0.11550152
## Linum.catharticum 0.15555556 0.84444444
## Lolium.perenne 1.00000000 0.00000000
## Lophocolea.semiteres 1.00000000 0.00000000
## Lotus.corniculatus 1.00000000 0.00000000
## Luzula.multiflora 1.00000000 0.00000000
## Lysimachia.maritima 1.00000000 0.00000000
## Medicago.lupulina 1.00000000 0.00000000
## Myosotis.arvensis 1.00000000 0.00000000
## Ononis.repens 0.93008280 0.06991720
## Oxalis.acetosella 1.00000000 0.00000000
## Pastinaca.sativa 1.00000000 0.00000000
## Pentaglottis.sempervirens 1.00000000 0.00000000
## Pillosella.officinarum 1.00000000 0.00000000
## Plantago.coronopus 1.00000000 0.00000000
## Plantago.lanceolata 0.15341772 0.84658228
## Pleurozium.schreberi 0.10588235 0.89411765
## Poa.annua 1.00000000 0.00000000
## Poa.spp. 1.00000000 0.00000000
## Polytrichum.commune 1.00000000 0.00000000
## Polytrichum.commune.agg. 1.00000000 0.00000000
## Polytrichum.formosum 1.00000000 0.00000000
## Potentilla.reptans 0.44117647 0.55882353
## Prunella.vulgaris 1.00000000 0.00000000
## Pseudoscleropidum.purum 0.32941176 0.67058824
## Pteridium.aquilinum 1.00000000 0.00000000
## Ranunculus.acris 0.00000000 1.00000000
## Ranunculus.repens 1.00000000 0.00000000
## Reseda.lutea 1.00000000 0.00000000
## Rhinanthus.minor 0.00000000 1.00000000
## Rhizomnium.punctatum 1.00000000 0.00000000
## Rhytidadelphus.squarrosus 0.76397516 0.23602484
## Rhytidadelphus.triquetris 1.00000000 0.00000000
## Rubus.fruticosus 1.00000000 0.00000000
## Sanguisorba.minor.spp.minor 1.00000000 0.00000000
## Saniona.uncinata 1.00000000 0.00000000
## Sedum.anglicum 1.00000000 0.00000000
## Senecio.jacobaea 1.00000000 0.00000000
## Senecio.vulgaris 1.00000000 0.00000000
## Sonchus.arvensis 1.00000000 0.00000000
## Stachys.sylvatica 1.00000000 0.00000000
## Stellaria.apetala 1.00000000 0.00000000
## Taraxacum.agg. 0.46478873 0.53521127
## Thuidium.tamariscinum 1.00000000 0.00000000
## Thymus.polytrichus 0.91726283 0.08273717
## Trichostomum.crispulum 1.00000000 0.00000000
## Trifolium.campestre 1.00000000 0.00000000
## Trifolium.dubium 1.00000000 0.00000000
## Trifolium.pratense 0.68852459 0.31147541
## Trifolium.repens 1.00000000 0.00000000
## Trisetum.flavescens 1.00000000 0.00000000
## Tussilago.farfara 1.00000000 0.00000000
## Urtica.diocia 0.08729792 0.91270208
## Veronica.officinalis 1.00000000 0.00000000
## Vicia.sativa 1.00000000 0.00000000
## Viola.riviniana 1.00000000 0.00000000
## Weissia.controversa 1.00000000 0.00000000
## Zygodon.stirtonii 0.00000000 1.00000000
##
## $indval
## 1 5
## Agrostis.spp. 0.0620160126 0.22111388
## Agrostis.canina 0.0263157895 0.00000000
## Alchemilla.mollis 0.0263157895 0.00000000
## Alopercus.pratensis 0.0263157895 0.00000000
## Angelica.sylvestris 0.0526315789 0.00000000
## Anthoxanthum.odoratum 0.0288903738 0.26014439
## Anthyllis.vulneraria 0.1315789474 0.00000000
## Aphanes.arvensis 0.0021728634 0.31957187
## Arrhenatherum.elatius 0.0079515335 0.31894484
## Atrichum.undulatum 0.0019255456 0.30894309
## Avenula.pratensis 0.0263157895 0.00000000
## Bellis.perennis 0.3157894737 0.00000000
## Betula.pubescens 0.0263157895 0.00000000
## Blackstonia.perfoliata 0.0263157895 0.00000000
## Brachythecium.albicans 0.0263157895 0.00000000
## Brachythecium.glareosum 0.0263157895 0.00000000
## Brachythecium.mildeanum 0.0043205027 0.31509121
## Brachythecium.rutabulum 0.0468331847 0.21468927
## Briza.media 0.0789473684 0.00000000
## Bromus.hordeaceus 0.0263157895 0.00000000
## Bryum.c.f..caespiticium 0.0263157895 0.00000000
## Bryum.c.f..pallescens 0.0789473684 0.00000000
## Bryum.capillare 0.0263157895 0.00000000
## Bryum.spp. 0.0789473684 0.00000000
## Calliergonella.cupsidata 0.2564210526 0.10133333
## Calypogeia.arguta 0.0724854842 0.36061684
## Campanula.rotundifolia 0.0263157895 0.00000000
## Carex.distans 0.0526315789 0.00000000
## Carex.flacca 0.0986842105 0.12500000
## Carex.panicea 0.0263157895 0.00000000
## Carlina.vulgaris 0.1819640565 0.07723577
## Centaurea.nigra 0.0526315789 0.00000000
## Centaurium.erythraea 0.0526315789 0.00000000
## Centaurium.littorale 0.1052631579 0.00000000
## Centaurium.pulchellum 0.0263157895 0.00000000
## Cerastium.fontanum 0.1842105263 0.00000000
## Chamaenerion.angustifolium 0.0263157895 0.00000000
## Cirriphyllum.piliferum 0.0263157895 0.00000000
## Cirsium.arvense 0.0789473684 0.00000000
## Cirsium.palustre 0.0526315789 0.00000000
## Crepis.capillaris 0.0526315789 0.00000000
## Cynosurus.cristatus 0.0133677753 0.24867076
## Dactylis.glomerata 0.0414888573 0.22822823
## Dactylorhiza.fuchsii 0.0167004049 0.12179487
## Danthonia.decumbens 0.0000000000 0.33333333
## Daucus.carrota 0.0526315789 0.00000000
## Dicranella.spp. 0.0263157895 0.00000000
## Dicranum.scoparium 0.0370328807 0.21606254
## Epilobium.montanum 0.0789473684 0.00000000
## Equisetum.arvense 0.0789473684 0.00000000
## Equisteum.variegatum 0.0263157895 0.00000000
## Erigeron.acer 0.0526315789 0.00000000
## Euphrasia.agg 0.2380322666 0.03182580
## Festuca.ovina 0.1842105263 0.00000000
## Festuca.rubra 0.3947368421 0.00000000
## Festuca.rubra.agg. 0.0263157895 0.00000000
## Filipendula.ulmaria 0.0789473684 0.00000000
## Fissidens.adianthoides 0.0263157895 0.00000000
## Fissidens.dubius 0.0526315789 0.00000000
## Fissidens.exilis 0.0263157895 0.00000000
## Fragaria.vesca 0.0338216156 0.24765191
## Galium.aparine 0.0263157895 0.00000000
## Galium.arvense 0.0263157895 0.00000000
## Galium.saxatile 0.0263157895 0.00000000
## Galium.verum 0.1052631579 0.00000000
## Geum.urbanum 0.0263157895 0.00000000
## Glechoma.hederacea 0.0263157895 0.00000000
## Helicotrichon.spp. 0.0263157895 0.00000000
## Heracleum.sphondylium 0.0218623482 0.19487179
## Hieracium.spp. 0.0263157895 0.00000000
## Holcus.spp. 0.2328620649 0.18585403
## Holcus.lanatus 0.0897762561 0.22995461
## Holcus.mollis 0.1247108155 0.01739927
## Homalothecium.lutescens 0.0526315789 0.00000000
## Hylocomium.splendens 0.0475329956 0.23298590
## Hypericum.perforatum 0.1095525157 0.05580029
## Hypnum.cupressiforme 0.0787616099 0.41725490
## Hypnum.imponens 0.0263157895 0.00000000
## Hypnum.jutlandicum 0.0003157895 0.65866667
## Hypochaeris.radicata 0.0263157895 0.00000000
## Kindbergia.praelonga 0.0805585392 0.12925170
## Lathyrus.pratensis 0.0126315789 0.25333333
## Leontodon.hispidus 0.0851120244 0.06381192
## Leontodon.saxatilis 0.0263157895 0.00000000
## Leucanthemum.vulgare 0.3025915853 0.03850051
## Linum.catharticum 0.0163742690 0.28148148
## Lolium.perenne 0.1052631579 0.00000000
## Lophocolea.semiteres 0.0263157895 0.00000000
## Lotus.corniculatus 0.4736842105 0.00000000
## Luzula.multiflora 0.0263157895 0.00000000
## Lysimachia.maritima 0.0526315789 0.00000000
## Medicago.lupulina 0.1315789474 0.00000000
## Myosotis.arvensis 0.1315789474 0.00000000
## Ononis.repens 0.1713310415 0.02330573
## Oxalis.acetosella 0.0263157895 0.00000000
## Pastinaca.sativa 0.0263157895 0.00000000
## Pentaglottis.sempervirens 0.0263157895 0.00000000
## Pillosella.officinarum 0.3157894737 0.00000000
## Plantago.coronopus 0.1052631579 0.00000000
## Plantago.lanceolata 0.0444103931 0.56438819
## Pleurozium.schreberi 0.0083591331 0.29803922
## Poa.annua 0.0789473684 0.00000000
## Poa.spp. 0.0263157895 0.00000000
## Polytrichum.commune 0.0263157895 0.00000000
## Polytrichum.commune.agg. 0.0263157895 0.00000000
## Polytrichum.formosum 0.0263157895 0.00000000
## Potentilla.reptans 0.0348297214 0.18627451
## Prunella.vulgaris 0.1315789474 0.00000000
## Pseudoscleropidum.purum 0.0606811146 0.22352941
## Pteridium.aquilinum 0.0789473684 0.00000000
## Ranunculus.acris 0.0000000000 0.33333333
## Ranunculus.repens 0.0789473684 0.00000000
## Reseda.lutea 0.0263157895 0.00000000
## Rhinanthus.minor 0.0000000000 0.33333333
## Rhizomnium.punctatum 0.0263157895 0.00000000
## Rhytidadelphus.squarrosus 0.2412553122 0.07867495
## Rhytidadelphus.triquetris 0.0526315789 0.00000000
## Rubus.fruticosus 0.0526315789 0.00000000
## Sanguisorba.minor.spp.minor 0.0526315789 0.00000000
## Saniona.uncinata 0.0526315789 0.00000000
## Sedum.anglicum 0.0263157895 0.00000000
## Senecio.jacobaea 0.0526315789 0.00000000
## Senecio.vulgaris 0.0263157895 0.00000000
## Sonchus.arvensis 0.0263157895 0.00000000
## Stachys.sylvatica 0.0526315789 0.00000000
## Stellaria.apetala 0.0263157895 0.00000000
## Taraxacum.agg. 0.1223128243 0.17840376
## Thuidium.tamariscinum 0.0789473684 0.00000000
## Thymus.polytrichus 0.1689694688 0.02757906
## Trichostomum.crispulum 0.1578947368 0.00000000
## Trifolium.campestre 0.1842105263 0.00000000
## Trifolium.dubium 0.0526315789 0.00000000
## Trifolium.pratense 0.0543572045 0.10382514
## Trifolium.repens 0.1315789474 0.00000000
## Trisetum.flavescens 0.1052631579 0.00000000
## Tussilago.farfara 0.0789473684 0.00000000
## Urtica.diocia 0.0068919412 0.30423403
## Veronica.officinalis 0.0263157895 0.00000000
## Vicia.sativa 0.0263157895 0.00000000
## Viola.riviniana 0.0263157895 0.00000000
## Weissia.controversa 0.0263157895 0.00000000
## Zygodon.stirtonii 0.0000000000 0.33333333
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 2 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 2
## Anthyllis.vulneraria Aphanes.arvensis
## 1 2
## Arrhenatherum.elatius Atrichum.undulatum
## 2 2
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 2 2
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 2
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 2 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 2
## Dactylis.glomerata Dactylorhiza.fuchsii
## 2 2
## Danthonia.decumbens Daucus.carrota
## 2 1
## Dicranella.spp. Dicranum.scoparium
## 1 2
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 1
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 2 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 2 1
## Holcus.spp. Holcus.lanatus
## 1 2
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 2 1
## Hypnum.cupressiforme Hypnum.imponens
## 2 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 2 1
## Kindbergia.praelonga Lathyrus.pratensis
## 2 2
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 2
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 2
## Pleurozium.schreberi Poa.annua
## 2 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 2 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 2 1
## Ranunculus.acris Ranunculus.repens
## 2 1
## Reseda.lutea Rhinanthus.minor
## 1 2
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 2 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 1 1
## Trifolium.pratense Trifolium.repens
## 2 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 2 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 2
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.22111388 0.02631579
## Alchemilla.mollis Alopercus.pratensis
## 0.02631579 0.02631579
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.05263158 0.26014439
## Anthyllis.vulneraria Aphanes.arvensis
## 0.13157895 0.31957187
## Arrhenatherum.elatius Atrichum.undulatum
## 0.31894484 0.30894309
## Avenula.pratensis Bellis.perennis
## 0.02631579 0.31578947
## Betula.pubescens Blackstonia.perfoliata
## 0.02631579 0.02631579
## Brachythecium.albicans Brachythecium.glareosum
## 0.02631579 0.02631579
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.31509121 0.21468927
## Briza.media Bromus.hordeaceus
## 0.07894737 0.02631579
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.02631579 0.07894737
## Bryum.capillare Bryum.spp.
## 0.02631579 0.07894737
## Calliergonella.cupsidata Calypogeia.arguta
## 0.25642105 0.36061684
## Campanula.rotundifolia Carex.distans
## 0.02631579 0.05263158
## Carex.flacca Carex.panicea
## 0.12500000 0.02631579
## Carlina.vulgaris Centaurea.nigra
## 0.18196406 0.05263158
## Centaurium.erythraea Centaurium.littorale
## 0.05263158 0.10526316
## Centaurium.pulchellum Cerastium.fontanum
## 0.02631579 0.18421053
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.02631579 0.02631579
## Cirsium.arvense Cirsium.palustre
## 0.07894737 0.05263158
## Crepis.capillaris Cynosurus.cristatus
## 0.05263158 0.24867076
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.22822823 0.12179487
## Danthonia.decumbens Daucus.carrota
## 0.33333333 0.05263158
## Dicranella.spp. Dicranum.scoparium
## 0.02631579 0.21606254
## Epilobium.montanum Equisetum.arvense
## 0.07894737 0.07894737
## Equisteum.variegatum Erigeron.acer
## 0.02631579 0.05263158
## Euphrasia.agg Festuca.ovina
## 0.23803227 0.18421053
## Festuca.rubra Festuca.rubra.agg.
## 0.39473684 0.02631579
## Filipendula.ulmaria Fissidens.adianthoides
## 0.07894737 0.02631579
## Fissidens.dubius Fissidens.exilis
## 0.05263158 0.02631579
## Fragaria.vesca Galium.aparine
## 0.24765191 0.02631579
## Galium.arvense Galium.saxatile
## 0.02631579 0.02631579
## Galium.verum Geum.urbanum
## 0.10526316 0.02631579
## Glechoma.hederacea Helicotrichon.spp.
## 0.02631579 0.02631579
## Heracleum.sphondylium Hieracium.spp.
## 0.19487179 0.02631579
## Holcus.spp. Holcus.lanatus
## 0.23286206 0.22995461
## Holcus.mollis Homalothecium.lutescens
## 0.12471082 0.05263158
## Hylocomium.splendens Hypericum.perforatum
## 0.23298590 0.10955252
## Hypnum.cupressiforme Hypnum.imponens
## 0.41725490 0.02631579
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.65866667 0.02631579
## Kindbergia.praelonga Lathyrus.pratensis
## 0.12925170 0.25333333
## Leontodon.hispidus Leontodon.saxatilis
## 0.08511202 0.02631579
## Leucanthemum.vulgare Linum.catharticum
## 0.30259159 0.28148148
## Lolium.perenne Lophocolea.semiteres
## 0.10526316 0.02631579
## Lotus.corniculatus Luzula.multiflora
## 0.47368421 0.02631579
## Lysimachia.maritima Medicago.lupulina
## 0.05263158 0.13157895
## Myosotis.arvensis Ononis.repens
## 0.13157895 0.17133104
## Oxalis.acetosella Pastinaca.sativa
## 0.02631579 0.02631579
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.02631579 0.31578947
## Plantago.coronopus Plantago.lanceolata
## 0.10526316 0.56438819
## Pleurozium.schreberi Poa.annua
## 0.29803922 0.07894737
## Poa.spp. Polytrichum.commune
## 0.02631579 0.02631579
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.02631579 0.02631579
## Potentilla.reptans Prunella.vulgaris
## 0.18627451 0.13157895
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.22352941 0.07894737
## Ranunculus.acris Ranunculus.repens
## 0.33333333 0.07894737
## Reseda.lutea Rhinanthus.minor
## 0.02631579 0.33333333
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.02631579 0.24125531
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.05263158 0.05263158
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.05263158 0.05263158
## Sedum.anglicum Senecio.jacobaea
## 0.02631579 0.05263158
## Senecio.vulgaris Sonchus.arvensis
## 0.02631579 0.02631579
## Stachys.sylvatica Stellaria.apetala
## 0.05263158 0.02631579
## Taraxacum.agg. Thuidium.tamariscinum
## 0.17840376 0.07894737
## Thymus.polytrichus Trichostomum.crispulum
## 0.16896947 0.15789474
## Trifolium.campestre Trifolium.dubium
## 0.18421053 0.05263158
## Trifolium.pratense Trifolium.repens
## 0.10382514 0.13157895
## Trisetum.flavescens Tussilago.farfara
## 0.10526316 0.07894737
## Urtica.diocia Veronica.officinalis
## 0.30423403 0.02631579
## Vicia.sativa Viola.riviniana
## 0.02631579 0.02631579
## Weissia.controversa Zygodon.stirtonii
## 0.02631579 0.33333333
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.231 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 0.204
## Anthyllis.vulneraria Aphanes.arvensis
## 0.945 0.072
## Arrhenatherum.elatius Atrichum.undulatum
## 0.122 0.149
## Avenula.pratensis Bellis.perennis
## 1.000 0.536
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.088 0.379
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.756 0.099
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.999 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.815 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.756
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 0.151
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.163 0.141
## Danthonia.decumbens Daucus.carrota
## 0.079 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 0.276
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.702 0.852
## Festuca.rubra Festuca.rubra.agg.
## 0.438 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 0.166 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 0.861 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 0.223 1.000
## Holcus.spp. Holcus.lanatus
## 0.982 0.708
## Holcus.mollis Homalothecium.lutescens
## 0.892 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.276 0.957
## Hypnum.cupressiforme Hypnum.imponens
## 0.118 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.005 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 0.224
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.574 0.159
## Lolium.perenne Lophocolea.semiteres
## 0.891 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.284 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 0.752
## Myosotis.arvensis Ononis.repens
## 1.000 0.920
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.469
## Plantago.coronopus Plantago.lanceolata
## 0.935 0.040
## Pleurozium.schreberi Poa.annua
## 0.079 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 0.133 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.309 1.000
## Ranunculus.acris Ranunculus.repens
## 0.062 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 0.067
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.669
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.786 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.889 0.935
## Trifolium.campestre Trifolium.dubium
## 0.794 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 0.903
## Trisetum.flavescens Tussilago.farfara
## 0.812 1.000
## Urtica.diocia Veronica.officinalis
## 0.164 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 0.063
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Hypnum jutlandicum has an indval score of 0.659 and a low p value of 0.007. This species is #the indicator species for Dickite.
clustGoethite <-cut(PlantChemistry1$Goethite, 5, labels=FALSE)
GoethiteIndval <- indval(as.matrix(PlantSpecies1), clustGoethite, type= "long")
gr <- GoethiteIndval$maxcls[GoethiteIndval$pval<=0.05]
iv <- GoethiteIndval$indcls[GoethiteIndval$pval<=0.05]
pv <- GoethiteIndval$pval[GoethiteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[GoethiteIndval$pval<=0.05]
GoethiteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
GoethiteIndvalsummary <- GoethiteIndvalsummary[order(GoethiteIndvalsummary$group,
-GoethiteIndvalsummary$indval),]
print(GoethiteIndvalsummary)
## group indval pvalue freq
## Centaurium.pulchellum 2 1.0000000 0.017 7
## Lysimachia.maritima 2 0.9993754 0.018 5
## Carex.distans 2 0.9890632 0.020 7
## Plantago.coronopus 2 0.9848812 0.022 13
summary(indval(as.matrix(PlantSpecies1), clustGoethite))
## cluster indicator_value probability
## Centaurium.pulchellum 2 1.0000 0.023
## Lysimachia.maritima 2 0.9994 0.024
## Carex.distans 2 0.9891 0.032
## Plantago.coronopus 2 0.9849 0.030
##
## Sum of probabilities = 133.539
##
## Sum of Indicator Values = 19.52
##
## Sum of Significant Indicator Values = 3.97
##
## Number of Significant Indicators = 4
##
## Significant Indicator Distribution
##
## 2
## 4
print(indval(as.matrix(PlantSpecies1), clustGoethite))
## $relfrq
## 1 5
## Agrostis.spp. 0.200 0
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.025 0
## Alopercus.pratensis 0.025 0
## Angelica.sylvestris 0.050 0
## Anthoxanthum.odoratum 0.150 0
## Anthyllis.vulneraria 0.125 0
## Aphanes.arvensis 0.075 0
## Arrhenatherum.elatius 0.200 0
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.025 0
## Bellis.perennis 0.300 0
## Betula.pubescens 0.025 0
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.075 1
## Brachythecium.rutabulum 0.150 0
## Briza.media 0.075 0
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.025 0
## Bryum.c.f..pallescens 0.075 0
## Bryum.capillare 0.025 0
## Bryum.spp. 0.075 0
## Calliergonella.cupsidata 0.375 0
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.025 0
## Carex.distans 0.025 1
## Carex.flacca 0.175 0
## Carex.panicea 0.025 0
## Carlina.vulgaris 0.250 0
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.100 0
## Centaurium.pulchellum 0.000 1
## Cerastium.fontanum 0.175 0
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.025 0
## Cirsium.arvense 0.075 0
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.050 0
## Cynosurus.cristatus 0.075 0
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.050 0
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.125 0
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.075 0
## Equisteum.variegatum 0.025 0
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.275 0
## Festuca.ovina 0.150 1
## Festuca.rubra 0.375 0
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.075 0
## Fissidens.adianthoides 0.025 0
## Fissidens.dubius 0.050 0
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.150 0
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.100 0
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.025 0
## Holcus.spp. 0.500 1
## Holcus.lanatus 0.300 0
## Holcus.mollis 0.150 0
## Homalothecium.lutescens 0.050 0
## Hylocomium.splendens 0.175 0
## Hypericum.perforatum 0.150 0
## Hypnum.cupressiforme 0.250 0
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.025 0
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.075 0
## Leontodon.hispidus 0.125 0
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.350 0
## Linum.catharticum 0.125 0
## Lolium.perenne 0.100 0
## Lophocolea.semiteres 0.025 0
## Lotus.corniculatus 0.450 0
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.025 1
## Medicago.lupulina 0.125 0
## Myosotis.arvensis 0.125 0
## Ononis.repens 0.200 0
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.300 0
## Plantago.coronopus 0.075 1
## Plantago.lanceolata 0.325 0
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.075 0
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.100 0
## Prunella.vulgaris 0.125 0
## Pseudoscleropidum.purum 0.175 1
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.075 0
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.325 0
## Rhytidadelphus.triquetris 0.050 0
## Rubus.fruticosus 0.050 0
## Sanguisorba.minor.spp.minor 0.050 0
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.050 0
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.050 0
## Stellaria.apetala 0.025 0
## Taraxacum.agg. 0.275 0
## Thuidium.tamariscinum 0.075 0
## Thymus.polytrichus 0.200 0
## Trichostomum.crispulum 0.150 0
## Trifolium.campestre 0.150 1
## Trifolium.dubium 0.050 0
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.125 0
## Trisetum.flavescens 0.100 0
## Tussilago.farfara 0.075 0
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.025 0
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.025 0
## Zygodon.stirtonii 0.025 0
##
## $relabu
## 1 5
## Agrostis.spp. 1.0000000000 0.0000000
## Agrostis.canina 1.0000000000 0.0000000
## Alchemilla.mollis 1.0000000000 0.0000000
## Alopercus.pratensis 1.0000000000 0.0000000
## Angelica.sylvestris 1.0000000000 0.0000000
## Anthoxanthum.odoratum 1.0000000000 0.0000000
## Anthyllis.vulneraria 1.0000000000 0.0000000
## Aphanes.arvensis 1.0000000000 0.0000000
## Arrhenatherum.elatius 1.0000000000 0.0000000
## Atrichum.undulatum 1.0000000000 0.0000000
## Avenula.pratensis 1.0000000000 0.0000000
## Bellis.perennis 1.0000000000 0.0000000
## Betula.pubescens 1.0000000000 0.0000000
## Blackstonia.perfoliata 1.0000000000 0.0000000
## Brachythecium.albicans 1.0000000000 0.0000000
## Brachythecium.glareosum 1.0000000000 0.0000000
## Brachythecium.mildeanum 0.2307692308 0.7692308
## Brachythecium.rutabulum 1.0000000000 0.0000000
## Briza.media 1.0000000000 0.0000000
## Bromus.hordeaceus 1.0000000000 0.0000000
## Bryum.c.f..caespiticium 1.0000000000 0.0000000
## Bryum.c.f..pallescens 1.0000000000 0.0000000
## Bryum.capillare 1.0000000000 0.0000000
## Bryum.spp. 1.0000000000 0.0000000
## Calliergonella.cupsidata 1.0000000000 0.0000000
## Calypogeia.arguta 1.0000000000 0.0000000
## Campanula.rotundifolia 1.0000000000 0.0000000
## Carex.distans 0.0109367570 0.9890632
## Carex.flacca 1.0000000000 0.0000000
## Carex.panicea 1.0000000000 0.0000000
## Carlina.vulgaris 1.0000000000 0.0000000
## Centaurea.nigra 1.0000000000 0.0000000
## Centaurium.erythraea 1.0000000000 0.0000000
## Centaurium.littorale 1.0000000000 0.0000000
## Centaurium.pulchellum 0.0000000000 1.0000000
## Cerastium.fontanum 1.0000000000 0.0000000
## Chamaenerion.angustifolium 1.0000000000 0.0000000
## Cirriphyllum.piliferum 1.0000000000 0.0000000
## Cirsium.arvense 1.0000000000 0.0000000
## Cirsium.palustre 1.0000000000 0.0000000
## Crepis.capillaris 1.0000000000 0.0000000
## Cynosurus.cristatus 1.0000000000 0.0000000
## Dactylis.glomerata 1.0000000000 0.0000000
## Dactylorhiza.fuchsii 1.0000000000 0.0000000
## Danthonia.decumbens 1.0000000000 0.0000000
## Daucus.carrota 1.0000000000 0.0000000
## Dicranella.spp. 1.0000000000 0.0000000
## Dicranum.scoparium 1.0000000000 0.0000000
## Epilobium.montanum 1.0000000000 0.0000000
## Equisetum.arvense 1.0000000000 0.0000000
## Equisteum.variegatum 1.0000000000 0.0000000
## Erigeron.acer 1.0000000000 0.0000000
## Euphrasia.agg 1.0000000000 0.0000000
## Festuca.ovina 0.1467576792 0.8532423
## Festuca.rubra 1.0000000000 0.0000000
## Festuca.rubra.agg. 1.0000000000 0.0000000
## Filipendula.ulmaria 1.0000000000 0.0000000
## Fissidens.adianthoides 1.0000000000 0.0000000
## Fissidens.dubius 1.0000000000 0.0000000
## Fissidens.exilis 1.0000000000 0.0000000
## Fragaria.vesca 1.0000000000 0.0000000
## Galium.aparine 1.0000000000 0.0000000
## Galium.arvense 1.0000000000 0.0000000
## Galium.saxatile 1.0000000000 0.0000000
## Galium.verum 1.0000000000 0.0000000
## Geum.urbanum 1.0000000000 0.0000000
## Glechoma.hederacea 1.0000000000 0.0000000
## Helicotrichon.spp. 1.0000000000 0.0000000
## Heracleum.sphondylium 1.0000000000 0.0000000
## Hieracium.spp. 1.0000000000 0.0000000
## Holcus.spp. 0.6201607012 0.3798393
## Holcus.lanatus 1.0000000000 0.0000000
## Holcus.mollis 1.0000000000 0.0000000
## Homalothecium.lutescens 1.0000000000 0.0000000
## Hylocomium.splendens 1.0000000000 0.0000000
## Hypericum.perforatum 1.0000000000 0.0000000
## Hypnum.cupressiforme 1.0000000000 0.0000000
## Hypnum.imponens 1.0000000000 0.0000000
## Hypnum.jutlandicum 1.0000000000 0.0000000
## Hypochaeris.radicata 1.0000000000 0.0000000
## Kindbergia.praelonga 1.0000000000 0.0000000
## Lathyrus.pratensis 1.0000000000 0.0000000
## Leontodon.hispidus 1.0000000000 0.0000000
## Leontodon.saxatilis 1.0000000000 0.0000000
## Leucanthemum.vulgare 1.0000000000 0.0000000
## Linum.catharticum 1.0000000000 0.0000000
## Lolium.perenne 1.0000000000 0.0000000
## Lophocolea.semiteres 1.0000000000 0.0000000
## Lotus.corniculatus 1.0000000000 0.0000000
## Luzula.multiflora 1.0000000000 0.0000000
## Lysimachia.maritima 0.0006246096 0.9993754
## Medicago.lupulina 1.0000000000 0.0000000
## Myosotis.arvensis 1.0000000000 0.0000000
## Ononis.repens 1.0000000000 0.0000000
## Oxalis.acetosella 1.0000000000 0.0000000
## Pastinaca.sativa 1.0000000000 0.0000000
## Pentaglottis.sempervirens 1.0000000000 0.0000000
## Pillosella.officinarum 1.0000000000 0.0000000
## Plantago.coronopus 0.0151187905 0.9848812
## Plantago.lanceolata 1.0000000000 0.0000000
## Pleurozium.schreberi 1.0000000000 0.0000000
## Poa.annua 1.0000000000 0.0000000
## Poa.spp. 1.0000000000 0.0000000
## Polytrichum.commune 1.0000000000 0.0000000
## Polytrichum.commune.agg. 1.0000000000 0.0000000
## Polytrichum.formosum 1.0000000000 0.0000000
## Potentilla.reptans 1.0000000000 0.0000000
## Prunella.vulgaris 1.0000000000 0.0000000
## Pseudoscleropidum.purum 0.4405594406 0.5594406
## Pteridium.aquilinum 1.0000000000 0.0000000
## Ranunculus.acris 1.0000000000 0.0000000
## Ranunculus.repens 1.0000000000 0.0000000
## Reseda.lutea 1.0000000000 0.0000000
## Rhinanthus.minor 1.0000000000 0.0000000
## Rhizomnium.punctatum 1.0000000000 0.0000000
## Rhytidadelphus.squarrosus 1.0000000000 0.0000000
## Rhytidadelphus.triquetris 1.0000000000 0.0000000
## Rubus.fruticosus 1.0000000000 0.0000000
## Sanguisorba.minor.spp.minor 1.0000000000 0.0000000
## Saniona.uncinata 1.0000000000 0.0000000
## Sedum.anglicum 1.0000000000 0.0000000
## Senecio.jacobaea 1.0000000000 0.0000000
## Senecio.vulgaris 1.0000000000 0.0000000
## Sonchus.arvensis 1.0000000000 0.0000000
## Stachys.sylvatica 1.0000000000 0.0000000
## Stellaria.apetala 1.0000000000 0.0000000
## Taraxacum.agg. 1.0000000000 0.0000000
## Thuidium.tamariscinum 1.0000000000 0.0000000
## Thymus.polytrichus 1.0000000000 0.0000000
## Trichostomum.crispulum 1.0000000000 0.0000000
## Trifolium.campestre 0.1941391941 0.8058608
## Trifolium.dubium 1.0000000000 0.0000000
## Trifolium.pratense 1.0000000000 0.0000000
## Trifolium.repens 1.0000000000 0.0000000
## Trisetum.flavescens 1.0000000000 0.0000000
## Tussilago.farfara 1.0000000000 0.0000000
## Urtica.diocia 1.0000000000 0.0000000
## Veronica.officinalis 1.0000000000 0.0000000
## Vicia.sativa 1.0000000000 0.0000000
## Viola.riviniana 1.0000000000 0.0000000
## Weissia.controversa 1.0000000000 0.0000000
## Zygodon.stirtonii 1.0000000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 2.000000e-01 0.0000000
## Agrostis.canina 2.500000e-02 0.0000000
## Alchemilla.mollis 2.500000e-02 0.0000000
## Alopercus.pratensis 2.500000e-02 0.0000000
## Angelica.sylvestris 5.000000e-02 0.0000000
## Anthoxanthum.odoratum 1.500000e-01 0.0000000
## Anthyllis.vulneraria 1.250000e-01 0.0000000
## Aphanes.arvensis 7.500000e-02 0.0000000
## Arrhenatherum.elatius 2.000000e-01 0.0000000
## Atrichum.undulatum 5.000000e-02 0.0000000
## Avenula.pratensis 2.500000e-02 0.0000000
## Bellis.perennis 3.000000e-01 0.0000000
## Betula.pubescens 2.500000e-02 0.0000000
## Blackstonia.perfoliata 2.500000e-02 0.0000000
## Brachythecium.albicans 2.500000e-02 0.0000000
## Brachythecium.glareosum 2.500000e-02 0.0000000
## Brachythecium.mildeanum 1.730769e-02 0.7692308
## Brachythecium.rutabulum 1.500000e-01 0.0000000
## Briza.media 7.500000e-02 0.0000000
## Bromus.hordeaceus 2.500000e-02 0.0000000
## Bryum.c.f..caespiticium 2.500000e-02 0.0000000
## Bryum.c.f..pallescens 7.500000e-02 0.0000000
## Bryum.capillare 2.500000e-02 0.0000000
## Bryum.spp. 7.500000e-02 0.0000000
## Calliergonella.cupsidata 3.750000e-01 0.0000000
## Calypogeia.arguta 2.000000e-01 0.0000000
## Campanula.rotundifolia 2.500000e-02 0.0000000
## Carex.distans 2.734189e-04 0.9890632
## Carex.flacca 1.750000e-01 0.0000000
## Carex.panicea 2.500000e-02 0.0000000
## Carlina.vulgaris 2.500000e-01 0.0000000
## Centaurea.nigra 5.000000e-02 0.0000000
## Centaurium.erythraea 5.000000e-02 0.0000000
## Centaurium.littorale 1.000000e-01 0.0000000
## Centaurium.pulchellum 0.000000e+00 1.0000000
## Cerastium.fontanum 1.750000e-01 0.0000000
## Chamaenerion.angustifolium 2.500000e-02 0.0000000
## Cirriphyllum.piliferum 2.500000e-02 0.0000000
## Cirsium.arvense 7.500000e-02 0.0000000
## Cirsium.palustre 5.000000e-02 0.0000000
## Crepis.capillaris 5.000000e-02 0.0000000
## Cynosurus.cristatus 7.500000e-02 0.0000000
## Dactylis.glomerata 1.500000e-01 0.0000000
## Dactylorhiza.fuchsii 5.000000e-02 0.0000000
## Danthonia.decumbens 2.500000e-02 0.0000000
## Daucus.carrota 5.000000e-02 0.0000000
## Dicranella.spp. 2.500000e-02 0.0000000
## Dicranum.scoparium 1.250000e-01 0.0000000
## Epilobium.montanum 7.500000e-02 0.0000000
## Equisetum.arvense 7.500000e-02 0.0000000
## Equisteum.variegatum 2.500000e-02 0.0000000
## Erigeron.acer 5.000000e-02 0.0000000
## Euphrasia.agg 2.750000e-01 0.0000000
## Festuca.ovina 2.201365e-02 0.8532423
## Festuca.rubra 3.750000e-01 0.0000000
## Festuca.rubra.agg. 2.500000e-02 0.0000000
## Filipendula.ulmaria 7.500000e-02 0.0000000
## Fissidens.adianthoides 2.500000e-02 0.0000000
## Fissidens.dubius 5.000000e-02 0.0000000
## Fissidens.exilis 2.500000e-02 0.0000000
## Fragaria.vesca 1.500000e-01 0.0000000
## Galium.aparine 2.500000e-02 0.0000000
## Galium.arvense 2.500000e-02 0.0000000
## Galium.saxatile 2.500000e-02 0.0000000
## Galium.verum 1.000000e-01 0.0000000
## Geum.urbanum 2.500000e-02 0.0000000
## Glechoma.hederacea 2.500000e-02 0.0000000
## Helicotrichon.spp. 2.500000e-02 0.0000000
## Heracleum.sphondylium 7.500000e-02 0.0000000
## Hieracium.spp. 2.500000e-02 0.0000000
## Holcus.spp. 3.100804e-01 0.3798393
## Holcus.lanatus 3.000000e-01 0.0000000
## Holcus.mollis 1.500000e-01 0.0000000
## Homalothecium.lutescens 5.000000e-02 0.0000000
## Hylocomium.splendens 1.750000e-01 0.0000000
## Hypericum.perforatum 1.500000e-01 0.0000000
## Hypnum.cupressiforme 2.500000e-01 0.0000000
## Hypnum.imponens 2.500000e-02 0.0000000
## Hypnum.jutlandicum 7.500000e-02 0.0000000
## Hypochaeris.radicata 2.500000e-02 0.0000000
## Kindbergia.praelonga 1.500000e-01 0.0000000
## Lathyrus.pratensis 7.500000e-02 0.0000000
## Leontodon.hispidus 1.250000e-01 0.0000000
## Leontodon.saxatilis 2.500000e-02 0.0000000
## Leucanthemum.vulgare 3.500000e-01 0.0000000
## Linum.catharticum 1.250000e-01 0.0000000
## Lolium.perenne 1.000000e-01 0.0000000
## Lophocolea.semiteres 2.500000e-02 0.0000000
## Lotus.corniculatus 4.500000e-01 0.0000000
## Luzula.multiflora 2.500000e-02 0.0000000
## Lysimachia.maritima 1.561524e-05 0.9993754
## Medicago.lupulina 1.250000e-01 0.0000000
## Myosotis.arvensis 1.250000e-01 0.0000000
## Ononis.repens 2.000000e-01 0.0000000
## Oxalis.acetosella 2.500000e-02 0.0000000
## Pastinaca.sativa 2.500000e-02 0.0000000
## Pentaglottis.sempervirens 2.500000e-02 0.0000000
## Pillosella.officinarum 3.000000e-01 0.0000000
## Plantago.coronopus 1.133909e-03 0.9848812
## Plantago.lanceolata 3.250000e-01 0.0000000
## Pleurozium.schreberi 1.000000e-01 0.0000000
## Poa.annua 7.500000e-02 0.0000000
## Poa.spp. 2.500000e-02 0.0000000
## Polytrichum.commune 2.500000e-02 0.0000000
## Polytrichum.commune.agg. 2.500000e-02 0.0000000
## Polytrichum.formosum 2.500000e-02 0.0000000
## Potentilla.reptans 1.000000e-01 0.0000000
## Prunella.vulgaris 1.250000e-01 0.0000000
## Pseudoscleropidum.purum 7.709790e-02 0.5594406
## Pteridium.aquilinum 7.500000e-02 0.0000000
## Ranunculus.acris 2.500000e-02 0.0000000
## Ranunculus.repens 7.500000e-02 0.0000000
## Reseda.lutea 2.500000e-02 0.0000000
## Rhinanthus.minor 2.500000e-02 0.0000000
## Rhizomnium.punctatum 2.500000e-02 0.0000000
## Rhytidadelphus.squarrosus 3.250000e-01 0.0000000
## Rhytidadelphus.triquetris 5.000000e-02 0.0000000
## Rubus.fruticosus 5.000000e-02 0.0000000
## Sanguisorba.minor.spp.minor 5.000000e-02 0.0000000
## Saniona.uncinata 5.000000e-02 0.0000000
## Sedum.anglicum 2.500000e-02 0.0000000
## Senecio.jacobaea 5.000000e-02 0.0000000
## Senecio.vulgaris 2.500000e-02 0.0000000
## Sonchus.arvensis 2.500000e-02 0.0000000
## Stachys.sylvatica 5.000000e-02 0.0000000
## Stellaria.apetala 2.500000e-02 0.0000000
## Taraxacum.agg. 2.750000e-01 0.0000000
## Thuidium.tamariscinum 7.500000e-02 0.0000000
## Thymus.polytrichus 2.000000e-01 0.0000000
## Trichostomum.crispulum 1.500000e-01 0.0000000
## Trifolium.campestre 2.912088e-02 0.8058608
## Trifolium.dubium 5.000000e-02 0.0000000
## Trifolium.pratense 1.000000e-01 0.0000000
## Trifolium.repens 1.250000e-01 0.0000000
## Trisetum.flavescens 1.000000e-01 0.0000000
## Tussilago.farfara 7.500000e-02 0.0000000
## Urtica.diocia 1.000000e-01 0.0000000
## Veronica.officinalis 2.500000e-02 0.0000000
## Vicia.sativa 2.500000e-02 0.0000000
## Viola.riviniana 2.500000e-02 0.0000000
## Weissia.controversa 2.500000e-02 0.0000000
## Zygodon.stirtonii 2.500000e-02 0.0000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 2 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 2
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 2 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 2
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 2 1
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 2 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 2 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 2 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 2 1
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.2000000 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 0.0250000 0.0250000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.0500000 0.1500000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.1250000 0.0750000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.2000000 0.0500000
## Avenula.pratensis Bellis.perennis
## 0.0250000 0.3000000
## Betula.pubescens Blackstonia.perfoliata
## 0.0250000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.7692308 0.1500000
## Briza.media Bromus.hordeaceus
## 0.0750000 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.0250000 0.0750000
## Bryum.capillare Bryum.spp.
## 0.0250000 0.0750000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.3750000 0.2000000
## Campanula.rotundifolia Carex.distans
## 0.0250000 0.9890632
## Carex.flacca Carex.panicea
## 0.1750000 0.0250000
## Carlina.vulgaris Centaurea.nigra
## 0.2500000 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.1000000
## Centaurium.pulchellum Cerastium.fontanum
## 1.0000000 0.1750000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 0.0250000
## Cirsium.arvense Cirsium.palustre
## 0.0750000 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.0500000 0.0750000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.0500000
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.1250000
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.0750000
## Equisteum.variegatum Erigeron.acer
## 0.0250000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.2750000 0.8532423
## Festuca.rubra Festuca.rubra.agg.
## 0.3750000 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.0750000 0.0250000
## Fissidens.dubius Fissidens.exilis
## 0.0500000 0.0250000
## Fragaria.vesca Galium.aparine
## 0.1500000 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.1000000 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 0.0250000
## Holcus.spp. Holcus.lanatus
## 0.3798393 0.3000000
## Holcus.mollis Homalothecium.lutescens
## 0.1500000 0.0500000
## Hylocomium.splendens Hypericum.perforatum
## 0.1750000 0.1500000
## Hypnum.cupressiforme Hypnum.imponens
## 0.2500000 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 0.0250000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.0750000
## Leontodon.hispidus Leontodon.saxatilis
## 0.1250000 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.3500000 0.1250000
## Lolium.perenne Lophocolea.semiteres
## 0.1000000 0.0250000
## Lotus.corniculatus Luzula.multiflora
## 0.4500000 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.9993754 0.1250000
## Myosotis.arvensis Ononis.repens
## 0.1250000 0.2000000
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.3000000
## Plantago.coronopus Plantago.lanceolata
## 0.9848812 0.3250000
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.0750000
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.1000000 0.1250000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.5594406 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.0750000
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.3250000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.0500000 0.0500000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.0500000 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.0500000
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.0500000 0.0250000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.2750000 0.0750000
## Thymus.polytrichus Trichostomum.crispulum
## 0.2000000 0.1500000
## Trifolium.campestre Trifolium.dubium
## 0.8058608 0.0500000
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.1250000
## Trisetum.flavescens Tussilago.farfara
## 0.1000000 0.0750000
## Urtica.diocia Veronica.officinalis
## 0.1000000 0.0250000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 0.0250000 0.0250000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1.000 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 1.000 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 1.000 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 1.000
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.076 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.914 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 0.029
## Carex.flacca Carex.panicea
## 0.984 1.000
## Carlina.vulgaris Centaurea.nigra
## 1.000 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 0.031 1.000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.941 0.103
## Festuca.rubra Festuca.rubra.agg.
## 0.895 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 1.000 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.937 0.952
## Holcus.mollis Homalothecium.lutescens
## 0.978 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.982 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 1.000 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.929 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.780 1.000
## Lysimachia.maritima Medicago.lupulina
## 0.018 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.919
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.886
## Plantago.coronopus Plantago.lanceolata
## 0.026 0.934
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.165 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 1.000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 1.000 1.000
## Trifolium.campestre Trifolium.dubium
## 0.087 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 1.000
## Trisetum.flavescens Tussilago.farfara
## 1.000 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Centaurium pulchellum has a high indval score of 1 and a low p value of 0.024. This #species is the indicator species for Goethite
clustHaematite <-cut(PlantChemistry1$Haematite, 5, labels=FALSE)
HaematiteIndval <- indval(as.matrix(PlantSpecies1), clustHaematite, type= "long")
gr <- HaematiteIndval$maxcls[HaematiteIndval$pval<=0.05]
iv <- HaematiteIndval$indcls[HaematiteIndval$pval<=0.05]
pv <- HaematiteIndval$pval[HaematiteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[HaematiteIndval$pval<=0.05]
HaematiteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
HaematiteIndvalsummary <- HaematiteIndvalsummary[order(HaematiteIndvalsummary$group,
-HaematiteIndvalsummary$indval),]
print(HaematiteIndvalsummary)
## group indval pvalue freq
## Hypnum.jutlandicum 2 0.9921722 0.004 1
## Plantago.lanceolata 2 0.8946820 0.011 4
## Calypogeia.arguta 2 0.6446281 0.033 1
## Danthonia.decumbens 2 0.5000000 0.045 2
## Aphanes.arvensis 2 0.4863946 0.049 8
summary(indval(as.matrix(PlantSpecies1), clustHaematite))
## cluster indicator_value probability
## Hypnum.jutlandicum 2 0.9922 0.004
## Plantago.lanceolata 2 0.8947 0.012
## Hypnum.cupressiforme 2 0.7203 0.045
## Calypogeia.arguta 2 0.6446 0.029
## Rhinanthus.minor 2 0.5000 0.044
## Aphanes.arvensis 2 0.4864 0.037
## Pleurozium.schreberi 2 0.4643 0.049
##
## Sum of probabilities = 112.105
##
## Sum of Indicator Values = 22.85
##
## Sum of Significant Indicator Values = 4.7
##
## Number of Significant Indicators = 7
##
## Significant Indicator Distribution
##
## 2
## 7
print(indval(as.matrix(PlantSpecies1), clustHaematite))
## $relfrq
## 1 5
## Agrostis.spp. 0.17948718 0.5
## Agrostis.canina 0.02564103 0.0
## Alchemilla.mollis 0.02564103 0.0
## Alopercus.pratensis 0.02564103 0.0
## Angelica.sylvestris 0.05128205 0.0
## Anthoxanthum.odoratum 0.12820513 0.5
## Anthyllis.vulneraria 0.12820513 0.0
## Aphanes.arvensis 0.05128205 0.5
## Arrhenatherum.elatius 0.17948718 0.5
## Atrichum.undulatum 0.02564103 0.5
## Avenula.pratensis 0.02564103 0.0
## Bellis.perennis 0.30769231 0.0
## Betula.pubescens 0.02564103 0.0
## Blackstonia.perfoliata 0.02564103 0.0
## Brachythecium.albicans 0.02564103 0.0
## Brachythecium.glareosum 0.02564103 0.0
## Brachythecium.mildeanum 0.07692308 0.5
## Brachythecium.rutabulum 0.12820513 0.5
## Briza.media 0.07692308 0.0
## Bromus.hordeaceus 0.02564103 0.0
## Bryum.c.f..caespiticium 0.02564103 0.0
## Bryum.c.f..pallescens 0.07692308 0.0
## Bryum.capillare 0.02564103 0.0
## Bryum.spp. 0.07692308 0.0
## Calliergonella.cupsidata 0.35897436 0.5
## Calypogeia.arguta 0.15384615 1.0
## Campanula.rotundifolia 0.02564103 0.0
## Carex.distans 0.05128205 0.0
## Carex.flacca 0.15384615 0.5
## Carex.panicea 0.02564103 0.0
## Carlina.vulgaris 0.25641026 0.0
## Centaurea.nigra 0.05128205 0.0
## Centaurium.erythraea 0.05128205 0.0
## Centaurium.littorale 0.10256410 0.0
## Centaurium.pulchellum 0.02564103 0.0
## Cerastium.fontanum 0.17948718 0.0
## Chamaenerion.angustifolium 0.02564103 0.0
## Cirriphyllum.piliferum 0.02564103 0.0
## Cirsium.arvense 0.07692308 0.0
## Cirsium.palustre 0.05128205 0.0
## Crepis.capillaris 0.05128205 0.0
## Cynosurus.cristatus 0.05128205 0.5
## Dactylis.glomerata 0.12820513 0.5
## Dactylorhiza.fuchsii 0.02564103 0.5
## Danthonia.decumbens 0.00000000 0.5
## Daucus.carrota 0.05128205 0.0
## Dicranella.spp. 0.02564103 0.0
## Dicranum.scoparium 0.10256410 0.5
## Epilobium.montanum 0.07692308 0.0
## Equisetum.arvense 0.07692308 0.0
## Equisteum.variegatum 0.02564103 0.0
## Erigeron.acer 0.05128205 0.0
## Euphrasia.agg 0.25641026 0.5
## Festuca.ovina 0.17948718 0.0
## Festuca.rubra 0.38461538 0.0
## Festuca.rubra.agg. 0.02564103 0.0
## Filipendula.ulmaria 0.07692308 0.0
## Fissidens.adianthoides 0.02564103 0.0
## Fissidens.dubius 0.05128205 0.0
## Fissidens.exilis 0.02564103 0.0
## Fragaria.vesca 0.12820513 0.5
## Galium.aparine 0.02564103 0.0
## Galium.arvense 0.02564103 0.0
## Galium.saxatile 0.02564103 0.0
## Galium.verum 0.10256410 0.0
## Geum.urbanum 0.02564103 0.0
## Glechoma.hederacea 0.02564103 0.0
## Helicotrichon.spp. 0.02564103 0.0
## Heracleum.sphondylium 0.05128205 0.5
## Hieracium.spp. 0.02564103 0.0
## Holcus.spp. 0.53846154 0.0
## Holcus.lanatus 0.28205128 0.5
## Holcus.mollis 0.12820513 0.5
## Homalothecium.lutescens 0.05128205 0.0
## Hylocomium.splendens 0.15384615 0.5
## Hypericum.perforatum 0.12820513 0.5
## Hypnum.cupressiforme 0.20512821 1.0
## Hypnum.imponens 0.02564103 0.0
## Hypnum.jutlandicum 0.02564103 1.0
## Hypochaeris.radicata 0.02564103 0.0
## Kindbergia.praelonga 0.12820513 0.5
## Lathyrus.pratensis 0.05128205 0.5
## Leontodon.hispidus 0.12820513 0.0
## Leontodon.saxatilis 0.02564103 0.0
## Leucanthemum.vulgare 0.33333333 0.5
## Linum.catharticum 0.12820513 0.0
## Lolium.perenne 0.10256410 0.0
## Lophocolea.semiteres 0.02564103 0.0
## Lotus.corniculatus 0.46153846 0.0
## Luzula.multiflora 0.02564103 0.0
## Lysimachia.maritima 0.05128205 0.0
## Medicago.lupulina 0.12820513 0.0
## Myosotis.arvensis 0.12820513 0.0
## Ononis.repens 0.17948718 0.5
## Oxalis.acetosella 0.02564103 0.0
## Pastinaca.sativa 0.02564103 0.0
## Pentaglottis.sempervirens 0.02564103 0.0
## Pillosella.officinarum 0.30769231 0.0
## Plantago.coronopus 0.10256410 0.0
## Plantago.lanceolata 0.28205128 1.0
## Pleurozium.schreberi 0.07692308 0.5
## Poa.annua 0.07692308 0.0
## Poa.spp. 0.02564103 0.0
## Polytrichum.commune 0.02564103 0.0
## Polytrichum.commune.agg. 0.02564103 0.0
## Polytrichum.formosum 0.02564103 0.0
## Potentilla.reptans 0.07692308 0.5
## Prunella.vulgaris 0.12820513 0.0
## Pseudoscleropidum.purum 0.17948718 0.5
## Pteridium.aquilinum 0.07692308 0.0
## Ranunculus.acris 0.00000000 0.5
## Ranunculus.repens 0.07692308 0.0
## Reseda.lutea 0.02564103 0.0
## Rhinanthus.minor 0.00000000 0.5
## Rhizomnium.punctatum 0.02564103 0.0
## Rhytidadelphus.squarrosus 0.30769231 0.5
## Rhytidadelphus.triquetris 0.05128205 0.0
## Rubus.fruticosus 0.05128205 0.0
## Sanguisorba.minor.spp.minor 0.05128205 0.0
## Saniona.uncinata 0.05128205 0.0
## Sedum.anglicum 0.02564103 0.0
## Senecio.jacobaea 0.05128205 0.0
## Senecio.vulgaris 0.02564103 0.0
## Sonchus.arvensis 0.02564103 0.0
## Stachys.sylvatica 0.05128205 0.0
## Stellaria.apetala 0.02564103 0.0
## Taraxacum.agg. 0.28205128 0.0
## Thuidium.tamariscinum 0.07692308 0.0
## Thymus.polytrichus 0.20512821 0.0
## Trichostomum.crispulum 0.15384615 0.0
## Trifolium.campestre 0.17948718 0.0
## Trifolium.dubium 0.05128205 0.0
## Trifolium.pratense 0.07692308 0.5
## Trifolium.repens 0.12820513 0.0
## Trisetum.flavescens 0.10256410 0.0
## Tussilago.farfara 0.07692308 0.0
## Urtica.diocia 0.07692308 0.5
## Veronica.officinalis 0.02564103 0.0
## Vicia.sativa 0.02564103 0.0
## Viola.riviniana 0.02564103 0.0
## Weissia.controversa 0.02564103 0.0
## Zygodon.stirtonii 0.02564103 0.0
##
## $relabu
## 1 5
## Agrostis.spp. 0.247933884 0.75206612
## Agrostis.canina 1.000000000 0.00000000
## Alchemilla.mollis 1.000000000 0.00000000
## Alopercus.pratensis 1.000000000 0.00000000
## Angelica.sylvestris 1.000000000 0.00000000
## Anthoxanthum.odoratum 0.154513205 0.84548680
## Anthyllis.vulneraria 1.000000000 0.00000000
## Aphanes.arvensis 0.027210884 0.97278912
## Arrhenatherum.elatius 0.028469751 0.97153025
## Atrichum.undulatum 0.048780488 0.95121951
## Avenula.pratensis 1.000000000 0.00000000
## Bellis.perennis 1.000000000 0.00000000
## Betula.pubescens 1.000000000 0.00000000
## Blackstonia.perfoliata 1.000000000 0.00000000
## Brachythecium.albicans 1.000000000 0.00000000
## Brachythecium.glareosum 1.000000000 0.00000000
## Brachythecium.mildeanum 0.036243822 0.96375618
## Brachythecium.rutabulum 0.264150943 0.73584906
## Briza.media 1.000000000 0.00000000
## Bromus.hordeaceus 1.000000000 0.00000000
## Bryum.c.f..caespiticium 1.000000000 0.00000000
## Bryum.c.f..pallescens 1.000000000 0.00000000
## Bryum.capillare 1.000000000 0.00000000
## Bryum.spp. 1.000000000 0.00000000
## Calliergonella.cupsidata 0.597938144 0.40206186
## Calypogeia.arguta 0.355371901 0.64462810
## Campanula.rotundifolia 1.000000000 0.00000000
## Carex.distans 1.000000000 0.00000000
## Carex.flacca 0.519835841 0.48016416
## Carex.panicea 1.000000000 0.00000000
## Carlina.vulgaris 1.000000000 0.00000000
## Centaurea.nigra 1.000000000 0.00000000
## Centaurium.erythraea 1.000000000 0.00000000
## Centaurium.littorale 1.000000000 0.00000000
## Centaurium.pulchellum 1.000000000 0.00000000
## Cerastium.fontanum 1.000000000 0.00000000
## Chamaenerion.angustifolium 1.000000000 0.00000000
## Cirriphyllum.piliferum 1.000000000 0.00000000
## Cirsium.arvense 1.000000000 0.00000000
## Cirsium.palustre 1.000000000 0.00000000
## Crepis.capillaris 1.000000000 0.00000000
## Cynosurus.cristatus 0.181102362 0.81889764
## Dactylis.glomerata 0.230263158 0.76973684
## Dactylorhiza.fuchsii 0.530120482 0.46987952
## Danthonia.decumbens 0.000000000 1.00000000
## Daucus.carrota 1.000000000 0.00000000
## Dicranella.spp. 1.000000000 0.00000000
## Dicranum.scoparium 0.260663507 0.73933649
## Epilobium.montanum 1.000000000 0.00000000
## Equisetum.arvense 1.000000000 0.00000000
## Equisteum.variegatum 1.000000000 0.00000000
## Erigeron.acer 1.000000000 0.00000000
## Euphrasia.agg 0.860215054 0.13978495
## Festuca.ovina 1.000000000 0.00000000
## Festuca.rubra 1.000000000 0.00000000
## Festuca.rubra.agg. 1.000000000 0.00000000
## Filipendula.ulmaria 1.000000000 0.00000000
## Fissidens.adianthoides 1.000000000 0.00000000
## Fissidens.dubius 1.000000000 0.00000000
## Fissidens.exilis 1.000000000 0.00000000
## Fragaria.vesca 0.183497537 0.81650246
## Galium.aparine 1.000000000 0.00000000
## Galium.arvense 1.000000000 0.00000000
## Galium.saxatile 1.000000000 0.00000000
## Galium.verum 1.000000000 0.00000000
## Geum.urbanum 1.000000000 0.00000000
## Glechoma.hederacea 1.000000000 0.00000000
## Helicotrichon.spp. 1.000000000 0.00000000
## Heracleum.sphondylium 0.315789474 0.68421053
## Hieracium.spp. 1.000000000 0.00000000
## Holcus.spp. 1.000000000 0.00000000
## Holcus.lanatus 0.226019846 0.77398015
## Holcus.mollis 0.921843687 0.07815631
## Homalothecium.lutescens 1.000000000 0.00000000
## Hylocomium.splendens 0.218610864 0.78138914
## Hypericum.perforatum 0.763636364 0.23636364
## Hypnum.cupressiforme 0.279683377 0.72031662
## Hypnum.imponens 1.000000000 0.00000000
## Hypnum.jutlandicum 0.007827789 0.99217221
## Hypochaeris.radicata 1.000000000 0.00000000
## Kindbergia.praelonga 0.506329114 0.49367089
## Lathyrus.pratensis 0.170212766 0.82978723
## Leontodon.hispidus 1.000000000 0.00000000
## Leontodon.saxatilis 1.000000000 0.00000000
## Leucanthemum.vulgare 0.832618026 0.16738197
## Linum.catharticum 1.000000000 0.00000000
## Lolium.perenne 1.000000000 0.00000000
## Lophocolea.semiteres 1.000000000 0.00000000
## Lotus.corniculatus 1.000000000 0.00000000
## Luzula.multiflora 1.000000000 0.00000000
## Lysimachia.maritima 1.000000000 0.00000000
## Medicago.lupulina 1.000000000 0.00000000
## Myosotis.arvensis 1.000000000 0.00000000
## Ononis.repens 0.896276596 0.10372340
## Oxalis.acetosella 1.000000000 0.00000000
## Pastinaca.sativa 1.000000000 0.00000000
## Pentaglottis.sempervirens 1.000000000 0.00000000
## Pillosella.officinarum 1.000000000 0.00000000
## Plantago.coronopus 1.000000000 0.00000000
## Plantago.lanceolata 0.105318040 0.89468196
## Pleurozium.schreberi 0.071428571 0.92857143
## Poa.annua 1.000000000 0.00000000
## Poa.spp. 1.000000000 0.00000000
## Polytrichum.commune 1.000000000 0.00000000
## Polytrichum.commune.agg. 1.000000000 0.00000000
## Polytrichum.formosum 1.000000000 0.00000000
## Potentilla.reptans 0.338983051 0.66101695
## Prunella.vulgaris 1.000000000 0.00000000
## Pseudoscleropidum.purum 0.241900648 0.75809935
## Pteridium.aquilinum 1.000000000 0.00000000
## Ranunculus.acris 0.000000000 1.00000000
## Ranunculus.repens 1.000000000 0.00000000
## Reseda.lutea 1.000000000 0.00000000
## Rhinanthus.minor 0.000000000 1.00000000
## Rhizomnium.punctatum 1.000000000 0.00000000
## Rhytidadelphus.squarrosus 0.677685950 0.32231405
## Rhytidadelphus.triquetris 1.000000000 0.00000000
## Rubus.fruticosus 1.000000000 0.00000000
## Sanguisorba.minor.spp.minor 1.000000000 0.00000000
## Saniona.uncinata 1.000000000 0.00000000
## Sedum.anglicum 1.000000000 0.00000000
## Senecio.jacobaea 1.000000000 0.00000000
## Senecio.vulgaris 1.000000000 0.00000000
## Sonchus.arvensis 1.000000000 0.00000000
## Stachys.sylvatica 1.000000000 0.00000000
## Stellaria.apetala 1.000000000 0.00000000
## Taraxacum.agg. 1.000000000 0.00000000
## Thuidium.tamariscinum 1.000000000 0.00000000
## Thymus.polytrichus 1.000000000 0.00000000
## Trichostomum.crispulum 1.000000000 0.00000000
## Trifolium.campestre 1.000000000 0.00000000
## Trifolium.dubium 1.000000000 0.00000000
## Trifolium.pratense 0.589473684 0.41052632
## Trifolium.repens 1.000000000 0.00000000
## Trisetum.flavescens 1.000000000 0.00000000
## Tussilago.farfara 1.000000000 0.00000000
## Urtica.diocia 0.058495822 0.94150418
## Veronica.officinalis 1.000000000 0.00000000
## Vicia.sativa 1.000000000 0.00000000
## Viola.riviniana 1.000000000 0.00000000
## Weissia.controversa 1.000000000 0.00000000
## Zygodon.stirtonii 1.000000000 0.00000000
##
## $indval
## 1 5
## Agrostis.spp. 0.0445009536 0.37603306
## Agrostis.canina 0.0256410256 0.00000000
## Alchemilla.mollis 0.0256410256 0.00000000
## Alopercus.pratensis 0.0256410256 0.00000000
## Angelica.sylvestris 0.0512820513 0.00000000
## Anthoxanthum.odoratum 0.0198093852 0.42274340
## Anthyllis.vulneraria 0.1282051282 0.00000000
## Aphanes.arvensis 0.0013954300 0.48639456
## Arrhenatherum.elatius 0.0051099553 0.48576512
## Atrichum.undulatum 0.0012507817 0.47560976
## Avenula.pratensis 0.0256410256 0.00000000
## Bellis.perennis 0.3076923077 0.00000000
## Betula.pubescens 0.0256410256 0.00000000
## Blackstonia.perfoliata 0.0256410256 0.00000000
## Brachythecium.albicans 0.0256410256 0.00000000
## Brachythecium.glareosum 0.0256410256 0.00000000
## Brachythecium.mildeanum 0.0027879863 0.48187809
## Brachythecium.rutabulum 0.0338655056 0.36792453
## Briza.media 0.0769230769 0.00000000
## Bromus.hordeaceus 0.0256410256 0.00000000
## Bryum.c.f..caespiticium 0.0256410256 0.00000000
## Bryum.c.f..pallescens 0.0769230769 0.00000000
## Bryum.capillare 0.0256410256 0.00000000
## Bryum.spp. 0.0769230769 0.00000000
## Calliergonella.cupsidata 0.2146444621 0.20103093
## Calypogeia.arguta 0.0546726001 0.64462810
## Campanula.rotundifolia 0.0256410256 0.00000000
## Carex.distans 0.0512820513 0.00000000
## Carex.flacca 0.0799747448 0.24008208
## Carex.panicea 0.0256410256 0.00000000
## Carlina.vulgaris 0.2564102564 0.00000000
## Centaurea.nigra 0.0512820513 0.00000000
## Centaurium.erythraea 0.0512820513 0.00000000
## Centaurium.littorale 0.1025641026 0.00000000
## Centaurium.pulchellum 0.0256410256 0.00000000
## Cerastium.fontanum 0.1794871795 0.00000000
## Chamaenerion.angustifolium 0.0256410256 0.00000000
## Cirriphyllum.piliferum 0.0256410256 0.00000000
## Cirsium.arvense 0.0769230769 0.00000000
## Cirsium.palustre 0.0512820513 0.00000000
## Crepis.capillaris 0.0512820513 0.00000000
## Cynosurus.cristatus 0.0092873006 0.40944882
## Dactylis.glomerata 0.0295209177 0.38486842
## Dactylorhiza.fuchsii 0.0135928329 0.23493976
## Danthonia.decumbens 0.0000000000 0.50000000
## Daucus.carrota 0.0512820513 0.00000000
## Dicranella.spp. 0.0256410256 0.00000000
## Dicranum.scoparium 0.0267347187 0.36966825
## Epilobium.montanum 0.0769230769 0.00000000
## Equisetum.arvense 0.0769230769 0.00000000
## Equisteum.variegatum 0.0256410256 0.00000000
## Erigeron.acer 0.0512820513 0.00000000
## Euphrasia.agg 0.2205679625 0.06989247
## Festuca.ovina 0.1794871795 0.00000000
## Festuca.rubra 0.3846153846 0.00000000
## Festuca.rubra.agg. 0.0256410256 0.00000000
## Filipendula.ulmaria 0.0769230769 0.00000000
## Fissidens.adianthoides 0.0256410256 0.00000000
## Fissidens.dubius 0.0512820513 0.00000000
## Fissidens.exilis 0.0256410256 0.00000000
## Fragaria.vesca 0.0235253252 0.40825123
## Galium.aparine 0.0256410256 0.00000000
## Galium.arvense 0.0256410256 0.00000000
## Galium.saxatile 0.0256410256 0.00000000
## Galium.verum 0.1025641026 0.00000000
## Geum.urbanum 0.0256410256 0.00000000
## Glechoma.hederacea 0.0256410256 0.00000000
## Helicotrichon.spp. 0.0256410256 0.00000000
## Heracleum.sphondylium 0.0161943320 0.34210526
## Hieracium.spp. 0.0256410256 0.00000000
## Holcus.spp. 0.5384615385 0.00000000
## Holcus.lanatus 0.0637491872 0.38699008
## Holcus.mollis 0.1181850881 0.03907816
## Homalothecium.lutescens 0.0512820513 0.00000000
## Hylocomium.splendens 0.0336324406 0.39069457
## Hypericum.perforatum 0.0979020979 0.11818182
## Hypnum.cupressiforme 0.0573709492 0.72031662
## Hypnum.imponens 0.0256410256 0.00000000
## Hypnum.jutlandicum 0.0002007125 0.99217221
## Hypochaeris.radicata 0.0256410256 0.00000000
## Kindbergia.praelonga 0.0649139890 0.24683544
## Lathyrus.pratensis 0.0087288598 0.41489362
## Leontodon.hispidus 0.1282051282 0.00000000
## Leontodon.saxatilis 0.0256410256 0.00000000
## Leucanthemum.vulgare 0.2775393419 0.08369099
## Linum.catharticum 0.1282051282 0.00000000
## Lolium.perenne 0.1025641026 0.00000000
## Lophocolea.semiteres 0.0256410256 0.00000000
## Lotus.corniculatus 0.4615384615 0.00000000
## Luzula.multiflora 0.0256410256 0.00000000
## Lysimachia.maritima 0.0512820513 0.00000000
## Medicago.lupulina 0.1282051282 0.00000000
## Myosotis.arvensis 0.1282051282 0.00000000
## Ononis.repens 0.1608701582 0.05186170
## Oxalis.acetosella 0.0256410256 0.00000000
## Pastinaca.sativa 0.0256410256 0.00000000
## Pentaglottis.sempervirens 0.0256410256 0.00000000
## Pillosella.officinarum 0.3076923077 0.00000000
## Plantago.coronopus 0.1025641026 0.00000000
## Plantago.lanceolata 0.0297050881 0.89468196
## Pleurozium.schreberi 0.0054945055 0.46428571
## Poa.annua 0.0769230769 0.00000000
## Poa.spp. 0.0256410256 0.00000000
## Polytrichum.commune 0.0256410256 0.00000000
## Polytrichum.commune.agg. 0.0256410256 0.00000000
## Polytrichum.formosum 0.0256410256 0.00000000
## Potentilla.reptans 0.0260756193 0.33050847
## Prunella.vulgaris 0.1282051282 0.00000000
## Pseudoscleropidum.purum 0.0434180650 0.37904968
## Pteridium.aquilinum 0.0769230769 0.00000000
## Ranunculus.acris 0.0000000000 0.50000000
## Ranunculus.repens 0.0769230769 0.00000000
## Reseda.lutea 0.0256410256 0.00000000
## Rhinanthus.minor 0.0000000000 0.50000000
## Rhizomnium.punctatum 0.0256410256 0.00000000
## Rhytidadelphus.squarrosus 0.2085187540 0.16115702
## Rhytidadelphus.triquetris 0.0512820513 0.00000000
## Rubus.fruticosus 0.0512820513 0.00000000
## Sanguisorba.minor.spp.minor 0.0512820513 0.00000000
## Saniona.uncinata 0.0512820513 0.00000000
## Sedum.anglicum 0.0256410256 0.00000000
## Senecio.jacobaea 0.0512820513 0.00000000
## Senecio.vulgaris 0.0256410256 0.00000000
## Sonchus.arvensis 0.0256410256 0.00000000
## Stachys.sylvatica 0.0512820513 0.00000000
## Stellaria.apetala 0.0256410256 0.00000000
## Taraxacum.agg. 0.2820512821 0.00000000
## Thuidium.tamariscinum 0.0769230769 0.00000000
## Thymus.polytrichus 0.2051282051 0.00000000
## Trichostomum.crispulum 0.1538461538 0.00000000
## Trifolium.campestre 0.1794871795 0.00000000
## Trifolium.dubium 0.0512820513 0.00000000
## Trifolium.pratense 0.0453441296 0.20526316
## Trifolium.repens 0.1282051282 0.00000000
## Trisetum.flavescens 0.1025641026 0.00000000
## Tussilago.farfara 0.0769230769 0.00000000
## Urtica.diocia 0.0044996786 0.47075209
## Veronica.officinalis 0.0256410256 0.00000000
## Vicia.sativa 0.0256410256 0.00000000
## Viola.riviniana 0.0256410256 0.00000000
## Weissia.controversa 0.0256410256 0.00000000
## Zygodon.stirtonii 0.0256410256 0.00000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 2 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 2
## Anthyllis.vulneraria Aphanes.arvensis
## 1 2
## Arrhenatherum.elatius Atrichum.undulatum
## 2 2
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 2 2
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 2
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 2 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 2
## Dactylis.glomerata Dactylorhiza.fuchsii
## 2 2
## Danthonia.decumbens Daucus.carrota
## 2 1
## Dicranella.spp. Dicranum.scoparium
## 1 2
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 1
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 2 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 2 1
## Holcus.spp. Holcus.lanatus
## 1 2
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 2 2
## Hypnum.cupressiforme Hypnum.imponens
## 2 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 2 1
## Kindbergia.praelonga Lathyrus.pratensis
## 2 2
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 2
## Pleurozium.schreberi Poa.annua
## 2 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 2 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 2 1
## Ranunculus.acris Ranunculus.repens
## 2 1
## Reseda.lutea Rhinanthus.minor
## 1 2
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 1 1
## Trifolium.pratense Trifolium.repens
## 2 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 2 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.37603306 0.02564103
## Alchemilla.mollis Alopercus.pratensis
## 0.02564103 0.02564103
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.05128205 0.42274340
## Anthyllis.vulneraria Aphanes.arvensis
## 0.12820513 0.48639456
## Arrhenatherum.elatius Atrichum.undulatum
## 0.48576512 0.47560976
## Avenula.pratensis Bellis.perennis
## 0.02564103 0.30769231
## Betula.pubescens Blackstonia.perfoliata
## 0.02564103 0.02564103
## Brachythecium.albicans Brachythecium.glareosum
## 0.02564103 0.02564103
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.48187809 0.36792453
## Briza.media Bromus.hordeaceus
## 0.07692308 0.02564103
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.02564103 0.07692308
## Bryum.capillare Bryum.spp.
## 0.02564103 0.07692308
## Calliergonella.cupsidata Calypogeia.arguta
## 0.21464446 0.64462810
## Campanula.rotundifolia Carex.distans
## 0.02564103 0.05128205
## Carex.flacca Carex.panicea
## 0.24008208 0.02564103
## Carlina.vulgaris Centaurea.nigra
## 0.25641026 0.05128205
## Centaurium.erythraea Centaurium.littorale
## 0.05128205 0.10256410
## Centaurium.pulchellum Cerastium.fontanum
## 0.02564103 0.17948718
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.02564103 0.02564103
## Cirsium.arvense Cirsium.palustre
## 0.07692308 0.05128205
## Crepis.capillaris Cynosurus.cristatus
## 0.05128205 0.40944882
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.38486842 0.23493976
## Danthonia.decumbens Daucus.carrota
## 0.50000000 0.05128205
## Dicranella.spp. Dicranum.scoparium
## 0.02564103 0.36966825
## Epilobium.montanum Equisetum.arvense
## 0.07692308 0.07692308
## Equisteum.variegatum Erigeron.acer
## 0.02564103 0.05128205
## Euphrasia.agg Festuca.ovina
## 0.22056796 0.17948718
## Festuca.rubra Festuca.rubra.agg.
## 0.38461538 0.02564103
## Filipendula.ulmaria Fissidens.adianthoides
## 0.07692308 0.02564103
## Fissidens.dubius Fissidens.exilis
## 0.05128205 0.02564103
## Fragaria.vesca Galium.aparine
## 0.40825123 0.02564103
## Galium.arvense Galium.saxatile
## 0.02564103 0.02564103
## Galium.verum Geum.urbanum
## 0.10256410 0.02564103
## Glechoma.hederacea Helicotrichon.spp.
## 0.02564103 0.02564103
## Heracleum.sphondylium Hieracium.spp.
## 0.34210526 0.02564103
## Holcus.spp. Holcus.lanatus
## 0.53846154 0.38699008
## Holcus.mollis Homalothecium.lutescens
## 0.11818509 0.05128205
## Hylocomium.splendens Hypericum.perforatum
## 0.39069457 0.11818182
## Hypnum.cupressiforme Hypnum.imponens
## 0.72031662 0.02564103
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.99217221 0.02564103
## Kindbergia.praelonga Lathyrus.pratensis
## 0.24683544 0.41489362
## Leontodon.hispidus Leontodon.saxatilis
## 0.12820513 0.02564103
## Leucanthemum.vulgare Linum.catharticum
## 0.27753934 0.12820513
## Lolium.perenne Lophocolea.semiteres
## 0.10256410 0.02564103
## Lotus.corniculatus Luzula.multiflora
## 0.46153846 0.02564103
## Lysimachia.maritima Medicago.lupulina
## 0.05128205 0.12820513
## Myosotis.arvensis Ononis.repens
## 0.12820513 0.16087016
## Oxalis.acetosella Pastinaca.sativa
## 0.02564103 0.02564103
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.02564103 0.30769231
## Plantago.coronopus Plantago.lanceolata
## 0.10256410 0.89468196
## Pleurozium.schreberi Poa.annua
## 0.46428571 0.07692308
## Poa.spp. Polytrichum.commune
## 0.02564103 0.02564103
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.02564103 0.02564103
## Potentilla.reptans Prunella.vulgaris
## 0.33050847 0.12820513
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.37904968 0.07692308
## Ranunculus.acris Ranunculus.repens
## 0.50000000 0.07692308
## Reseda.lutea Rhinanthus.minor
## 0.02564103 0.50000000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.02564103 0.20851875
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.05128205 0.05128205
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.05128205 0.05128205
## Sedum.anglicum Senecio.jacobaea
## 0.02564103 0.05128205
## Senecio.vulgaris Sonchus.arvensis
## 0.02564103 0.02564103
## Stachys.sylvatica Stellaria.apetala
## 0.05128205 0.02564103
## Taraxacum.agg. Thuidium.tamariscinum
## 0.28205128 0.07692308
## Thymus.polytrichus Trichostomum.crispulum
## 0.20512821 0.15384615
## Trifolium.campestre Trifolium.dubium
## 0.17948718 0.05128205
## Trifolium.pratense Trifolium.repens
## 0.20526316 0.12820513
## Trisetum.flavescens Tussilago.farfara
## 0.10256410 0.07692308
## Urtica.diocia Veronica.officinalis
## 0.47075209 0.02564103
## Vicia.sativa Viola.riviniana
## 0.02564103 0.02564103
## Weissia.controversa Zygodon.stirtonii
## 0.02564103 0.02564103
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.138 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 0.149
## Anthyllis.vulneraria Aphanes.arvensis
## 0.958 0.048
## Arrhenatherum.elatius Atrichum.undulatum
## 0.066 0.094
## Avenula.pratensis Bellis.perennis
## 1.000 0.799
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.050 0.274
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 1.000 0.030
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.194 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.870 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 1.000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 0.101
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.106 0.090
## Danthonia.decumbens Daucus.carrota
## 0.057 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 0.194
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.884 0.914
## Festuca.rubra Festuca.rubra.agg.
## 0.503 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 0.112 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 0.909 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 0.140 1.000
## Holcus.spp. Holcus.lanatus
## 0.413 0.141
## Holcus.mollis Homalothecium.lutescens
## 1.000 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.213 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 0.049 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.004 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.262 0.137
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.832 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.466 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.952
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.669
## Plantago.coronopus Plantago.lanceolata
## 0.955 0.011
## Pleurozium.schreberi Poa.annua
## 0.055 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 0.094 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.189 1.000
## Ranunculus.acris Ranunculus.repens
## 0.057 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 0.037
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 1.000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.814 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.880 1.000
## Trifolium.campestre Trifolium.dubium
## 0.907 1.000
## Trifolium.pratense Trifolium.repens
## 0.175 1.000
## Trisetum.flavescens Tussilago.farfara
## 0.918 1.000
## Urtica.diocia Veronica.officinalis
## 0.102 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Hypnum jutlandicum has a high indval score of 0.992 and a low p value of 0.002. This #species is the indicator species for Haematite.
clustIllite <-cut(PlantChemistry1$Illite, 5, labels=FALSE)
IlliteIndval <- indval(as.matrix(PlantSpecies1), clustIllite, type= "long")
gr <- IlliteIndval$maxcls[IlliteIndval$pval<=0.05]
iv <- IlliteIndval$indcls[IlliteIndval$pval<=0.05]
pv <- IlliteIndval$pval[IlliteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[IlliteIndval$pval<=0.05]
IlliteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
IlliteIndvalsummary <- IlliteIndvalsummary[order(IlliteIndvalsummary$group,
-IlliteIndvalsummary$indval),]
print(IlliteIndvalsummary)
## group indval pvalue freq
## Hypnum.imponens 2 0.5000000 0.045 3
## Galium.verum 2 0.4750831 0.045 1
summary(indval(as.matrix(PlantSpecies1), clustIllite))
## cluster indicator_value probability
## Hypnum.imponens 2 0.5000 0.045
## Polytrichum.commune 2 0.5000 0.046
## Polytrichum.commune.agg. 2 0.5000 0.040
## Briza.media 2 0.4969 0.040
## Galium.verum 2 0.4751 0.039
##
## Sum of probabilities = 119.842
##
## Sum of Indicator Values = 19.81
##
## Sum of Significant Indicator Values = 2.47
##
## Number of Significant Indicators = 5
##
## Significant Indicator Distribution
##
## 2
## 5
print(indval(as.matrix(PlantSpecies1), clustIllite))
## $relfrq
## 1 5
## Agrostis.spp. 0.20512821 0.0
## Agrostis.canina 0.02564103 0.0
## Alchemilla.mollis 0.02564103 0.0
## Alopercus.pratensis 0.02564103 0.0
## Angelica.sylvestris 0.05128205 0.0
## Anthoxanthum.odoratum 0.15384615 0.0
## Anthyllis.vulneraria 0.10256410 0.5
## Aphanes.arvensis 0.07692308 0.0
## Arrhenatherum.elatius 0.17948718 0.5
## Atrichum.undulatum 0.05128205 0.0
## Avenula.pratensis 0.02564103 0.0
## Bellis.perennis 0.28205128 0.5
## Betula.pubescens 0.02564103 0.0
## Blackstonia.perfoliata 0.02564103 0.0
## Brachythecium.albicans 0.02564103 0.0
## Brachythecium.glareosum 0.02564103 0.0
## Brachythecium.mildeanum 0.10256410 0.0
## Brachythecium.rutabulum 0.12820513 0.5
## Briza.media 0.05128205 0.5
## Bromus.hordeaceus 0.02564103 0.0
## Bryum.c.f..caespiticium 0.02564103 0.0
## Bryum.c.f..pallescens 0.07692308 0.0
## Bryum.capillare 0.02564103 0.0
## Bryum.spp. 0.07692308 0.0
## Calliergonella.cupsidata 0.33333333 1.0
## Calypogeia.arguta 0.17948718 0.5
## Campanula.rotundifolia 0.02564103 0.0
## Carex.distans 0.05128205 0.0
## Carex.flacca 0.17948718 0.0
## Carex.panicea 0.02564103 0.0
## Carlina.vulgaris 0.25641026 0.0
## Centaurea.nigra 0.05128205 0.0
## Centaurium.erythraea 0.05128205 0.0
## Centaurium.littorale 0.10256410 0.0
## Centaurium.pulchellum 0.02564103 0.0
## Cerastium.fontanum 0.15384615 0.5
## Chamaenerion.angustifolium 0.02564103 0.0
## Cirriphyllum.piliferum 0.02564103 0.0
## Cirsium.arvense 0.07692308 0.0
## Cirsium.palustre 0.05128205 0.0
## Crepis.capillaris 0.05128205 0.0
## Cynosurus.cristatus 0.07692308 0.0
## Dactylis.glomerata 0.15384615 0.0
## Dactylorhiza.fuchsii 0.05128205 0.0
## Danthonia.decumbens 0.02564103 0.0
## Daucus.carrota 0.05128205 0.0
## Dicranella.spp. 0.02564103 0.0
## Dicranum.scoparium 0.10256410 0.5
## Epilobium.montanum 0.07692308 0.0
## Equisetum.arvense 0.07692308 0.0
## Equisteum.variegatum 0.02564103 0.0
## Erigeron.acer 0.05128205 0.0
## Euphrasia.agg 0.25641026 0.5
## Festuca.ovina 0.17948718 0.0
## Festuca.rubra 0.35897436 0.5
## Festuca.rubra.agg. 0.02564103 0.0
## Filipendula.ulmaria 0.07692308 0.0
## Fissidens.adianthoides 0.02564103 0.0
## Fissidens.dubius 0.05128205 0.0
## Fissidens.exilis 0.02564103 0.0
## Fragaria.vesca 0.15384615 0.0
## Galium.aparine 0.02564103 0.0
## Galium.arvense 0.02564103 0.0
## Galium.saxatile 0.02564103 0.0
## Galium.verum 0.07692308 0.5
## Geum.urbanum 0.02564103 0.0
## Glechoma.hederacea 0.02564103 0.0
## Helicotrichon.spp. 0.02564103 0.0
## Heracleum.sphondylium 0.07692308 0.0
## Hieracium.spp. 0.02564103 0.0
## Holcus.spp. 0.53846154 0.0
## Holcus.lanatus 0.28205128 0.5
## Holcus.mollis 0.12820513 0.5
## Homalothecium.lutescens 0.05128205 0.0
## Hylocomium.splendens 0.15384615 0.5
## Hypericum.perforatum 0.15384615 0.0
## Hypnum.cupressiforme 0.23076923 0.5
## Hypnum.imponens 0.00000000 0.5
## Hypnum.jutlandicum 0.07692308 0.0
## Hypochaeris.radicata 0.02564103 0.0
## Kindbergia.praelonga 0.12820513 0.5
## Lathyrus.pratensis 0.07692308 0.0
## Leontodon.hispidus 0.12820513 0.0
## Leontodon.saxatilis 0.02564103 0.0
## Leucanthemum.vulgare 0.35897436 0.0
## Linum.catharticum 0.12820513 0.0
## Lolium.perenne 0.10256410 0.0
## Lophocolea.semiteres 0.02564103 0.0
## Lotus.corniculatus 0.43589744 0.5
## Luzula.multiflora 0.02564103 0.0
## Lysimachia.maritima 0.05128205 0.0
## Medicago.lupulina 0.12820513 0.0
## Myosotis.arvensis 0.12820513 0.0
## Ononis.repens 0.20512821 0.0
## Oxalis.acetosella 0.02564103 0.0
## Pastinaca.sativa 0.02564103 0.0
## Pentaglottis.sempervirens 0.02564103 0.0
## Pillosella.officinarum 0.30769231 0.0
## Plantago.coronopus 0.10256410 0.0
## Plantago.lanceolata 0.33333333 0.0
## Pleurozium.schreberi 0.07692308 0.5
## Poa.annua 0.07692308 0.0
## Poa.spp. 0.02564103 0.0
## Polytrichum.commune 0.00000000 0.5
## Polytrichum.commune.agg. 0.00000000 0.5
## Polytrichum.formosum 0.02564103 0.0
## Potentilla.reptans 0.10256410 0.0
## Prunella.vulgaris 0.12820513 0.0
## Pseudoscleropidum.purum 0.17948718 0.5
## Pteridium.aquilinum 0.07692308 0.0
## Ranunculus.acris 0.02564103 0.0
## Ranunculus.repens 0.07692308 0.0
## Reseda.lutea 0.02564103 0.0
## Rhinanthus.minor 0.02564103 0.0
## Rhizomnium.punctatum 0.02564103 0.0
## Rhytidadelphus.squarrosus 0.30769231 0.5
## Rhytidadelphus.triquetris 0.05128205 0.0
## Rubus.fruticosus 0.05128205 0.0
## Sanguisorba.minor.spp.minor 0.02564103 0.5
## Saniona.uncinata 0.02564103 0.5
## Sedum.anglicum 0.02564103 0.0
## Senecio.jacobaea 0.05128205 0.0
## Senecio.vulgaris 0.02564103 0.0
## Sonchus.arvensis 0.02564103 0.0
## Stachys.sylvatica 0.05128205 0.0
## Stellaria.apetala 0.02564103 0.0
## Taraxacum.agg. 0.25641026 0.5
## Thuidium.tamariscinum 0.05128205 0.5
## Thymus.polytrichus 0.20512821 0.0
## Trichostomum.crispulum 0.15384615 0.0
## Trifolium.campestre 0.15384615 0.5
## Trifolium.dubium 0.05128205 0.0
## Trifolium.pratense 0.10256410 0.0
## Trifolium.repens 0.10256410 0.5
## Trisetum.flavescens 0.10256410 0.0
## Tussilago.farfara 0.07692308 0.0
## Urtica.diocia 0.10256410 0.0
## Veronica.officinalis 0.02564103 0.0
## Vicia.sativa 0.02564103 0.0
## Viola.riviniana 0.02564103 0.0
## Weissia.controversa 0.02564103 0.0
## Zygodon.stirtonii 0.02564103 0.0
##
## $relabu
## 1 5
## Agrostis.spp. 1.000000000 0.00000000
## Agrostis.canina 1.000000000 0.00000000
## Alchemilla.mollis 1.000000000 0.00000000
## Alopercus.pratensis 1.000000000 0.00000000
## Angelica.sylvestris 1.000000000 0.00000000
## Anthoxanthum.odoratum 1.000000000 0.00000000
## Anthyllis.vulneraria 0.106440556 0.89355944
## Aphanes.arvensis 1.000000000 0.00000000
## Arrhenatherum.elatius 0.769230769 0.23076923
## Atrichum.undulatum 1.000000000 0.00000000
## Avenula.pratensis 1.000000000 0.00000000
## Bellis.perennis 0.779661017 0.22033898
## Betula.pubescens 1.000000000 0.00000000
## Blackstonia.perfoliata 1.000000000 0.00000000
## Brachythecium.albicans 1.000000000 0.00000000
## Brachythecium.glareosum 1.000000000 0.00000000
## Brachythecium.mildeanum 1.000000000 0.00000000
## Brachythecium.rutabulum 0.264150943 0.73584906
## Briza.media 0.006277696 0.99372230
## Bromus.hordeaceus 1.000000000 0.00000000
## Bryum.c.f..caespiticium 1.000000000 0.00000000
## Bryum.c.f..pallescens 1.000000000 0.00000000
## Bryum.capillare 1.000000000 0.00000000
## Bryum.spp. 1.000000000 0.00000000
## Calliergonella.cupsidata 0.269165247 0.73083475
## Calypogeia.arguta 0.143712575 0.85628743
## Campanula.rotundifolia 1.000000000 0.00000000
## Carex.distans 1.000000000 0.00000000
## Carex.flacca 1.000000000 0.00000000
## Carex.panicea 1.000000000 0.00000000
## Carlina.vulgaris 1.000000000 0.00000000
## Centaurea.nigra 1.000000000 0.00000000
## Centaurium.erythraea 1.000000000 0.00000000
## Centaurium.littorale 1.000000000 0.00000000
## Centaurium.pulchellum 1.000000000 0.00000000
## Cerastium.fontanum 0.380952381 0.61904762
## Chamaenerion.angustifolium 1.000000000 0.00000000
## Cirriphyllum.piliferum 1.000000000 0.00000000
## Cirsium.arvense 1.000000000 0.00000000
## Cirsium.palustre 1.000000000 0.00000000
## Crepis.capillaris 1.000000000 0.00000000
## Cynosurus.cristatus 1.000000000 0.00000000
## Dactylis.glomerata 1.000000000 0.00000000
## Dactylorhiza.fuchsii 1.000000000 0.00000000
## Danthonia.decumbens 1.000000000 0.00000000
## Daucus.carrota 1.000000000 0.00000000
## Dicranella.spp. 1.000000000 0.00000000
## Dicranum.scoparium 0.072312084 0.92768792
## Epilobium.montanum 1.000000000 0.00000000
## Equisetum.arvense 1.000000000 0.00000000
## Equisteum.variegatum 1.000000000 0.00000000
## Erigeron.acer 1.000000000 0.00000000
## Euphrasia.agg 0.281578947 0.71842105
## Festuca.ovina 1.000000000 0.00000000
## Festuca.rubra 0.950570342 0.04942966
## Festuca.rubra.agg. 1.000000000 0.00000000
## Filipendula.ulmaria 1.000000000 0.00000000
## Fissidens.adianthoides 1.000000000 0.00000000
## Fissidens.dubius 1.000000000 0.00000000
## Fissidens.exilis 1.000000000 0.00000000
## Fragaria.vesca 1.000000000 0.00000000
## Galium.aparine 1.000000000 0.00000000
## Galium.arvense 1.000000000 0.00000000
## Galium.saxatile 1.000000000 0.00000000
## Galium.verum 0.049833887 0.95016611
## Geum.urbanum 1.000000000 0.00000000
## Glechoma.hederacea 1.000000000 0.00000000
## Helicotrichon.spp. 1.000000000 0.00000000
## Heracleum.sphondylium 1.000000000 0.00000000
## Hieracium.spp. 1.000000000 0.00000000
## Holcus.spp. 1.000000000 0.00000000
## Holcus.lanatus 0.924855491 0.07514451
## Holcus.mollis 0.030592734 0.96940727
## Homalothecium.lutescens 1.000000000 0.00000000
## Hylocomium.splendens 0.218610864 0.78138914
## Hypericum.perforatum 1.000000000 0.00000000
## Hypnum.cupressiforme 0.597938144 0.40206186
## Hypnum.imponens 0.000000000 1.00000000
## Hypnum.jutlandicum 1.000000000 0.00000000
## Hypochaeris.radicata 1.000000000 0.00000000
## Kindbergia.praelonga 0.235294118 0.76470588
## Lathyrus.pratensis 1.000000000 0.00000000
## Leontodon.hispidus 1.000000000 0.00000000
## Leontodon.saxatilis 1.000000000 0.00000000
## Leucanthemum.vulgare 1.000000000 0.00000000
## Linum.catharticum 1.000000000 0.00000000
## Lolium.perenne 1.000000000 0.00000000
## Lophocolea.semiteres 1.000000000 0.00000000
## Lotus.corniculatus 0.738450075 0.26154993
## Luzula.multiflora 1.000000000 0.00000000
## Lysimachia.maritima 1.000000000 0.00000000
## Medicago.lupulina 1.000000000 0.00000000
## Myosotis.arvensis 1.000000000 0.00000000
## Ononis.repens 1.000000000 0.00000000
## Oxalis.acetosella 1.000000000 0.00000000
## Pastinaca.sativa 1.000000000 0.00000000
## Pentaglottis.sempervirens 1.000000000 0.00000000
## Pillosella.officinarum 1.000000000 0.00000000
## Plantago.coronopus 1.000000000 0.00000000
## Plantago.lanceolata 1.000000000 0.00000000
## Pleurozium.schreberi 0.170212766 0.82978723
## Poa.annua 1.000000000 0.00000000
## Poa.spp. 1.000000000 0.00000000
## Polytrichum.commune 0.000000000 1.00000000
## Polytrichum.commune.agg. 0.000000000 1.00000000
## Polytrichum.formosum 1.000000000 0.00000000
## Potentilla.reptans 1.000000000 0.00000000
## Prunella.vulgaris 1.000000000 0.00000000
## Pseudoscleropidum.purum 0.766467066 0.23353293
## Pteridium.aquilinum 1.000000000 0.00000000
## Ranunculus.acris 1.000000000 0.00000000
## Ranunculus.repens 1.000000000 0.00000000
## Reseda.lutea 1.000000000 0.00000000
## Rhinanthus.minor 1.000000000 0.00000000
## Rhizomnium.punctatum 1.000000000 0.00000000
## Rhytidadelphus.squarrosus 0.349013657 0.65098634
## Rhytidadelphus.triquetris 1.000000000 0.00000000
## Rubus.fruticosus 1.000000000 0.00000000
## Sanguisorba.minor.spp.minor 0.148471616 0.85152838
## Saniona.uncinata 0.048780488 0.95121951
## Sedum.anglicum 1.000000000 0.00000000
## Senecio.jacobaea 1.000000000 0.00000000
## Senecio.vulgaris 1.000000000 0.00000000
## Sonchus.arvensis 1.000000000 0.00000000
## Stachys.sylvatica 1.000000000 0.00000000
## Stellaria.apetala 1.000000000 0.00000000
## Taraxacum.agg. 0.541176471 0.45882353
## Thuidium.tamariscinum 0.204081633 0.79591837
## Thymus.polytrichus 1.000000000 0.00000000
## Trichostomum.crispulum 1.000000000 0.00000000
## Trifolium.campestre 0.181297710 0.81870229
## Trifolium.dubium 1.000000000 0.00000000
## Trifolium.pratense 1.000000000 0.00000000
## Trifolium.repens 0.417910448 0.58208955
## Trisetum.flavescens 1.000000000 0.00000000
## Tussilago.farfara 1.000000000 0.00000000
## Urtica.diocia 1.000000000 0.00000000
## Veronica.officinalis 1.000000000 0.00000000
## Vicia.sativa 1.000000000 0.00000000
## Viola.riviniana 1.000000000 0.00000000
## Weissia.controversa 1.000000000 0.00000000
## Zygodon.stirtonii 1.000000000 0.00000000
##
## $indval
## 1 5
## Agrostis.spp. 0.2051282051 0.00000000
## Agrostis.canina 0.0256410256 0.00000000
## Alchemilla.mollis 0.0256410256 0.00000000
## Alopercus.pratensis 0.0256410256 0.00000000
## Angelica.sylvestris 0.0512820513 0.00000000
## Anthoxanthum.odoratum 0.1538461538 0.00000000
## Anthyllis.vulneraria 0.0109169801 0.44677972
## Aphanes.arvensis 0.0769230769 0.00000000
## Arrhenatherum.elatius 0.1380670611 0.11538462
## Atrichum.undulatum 0.0512820513 0.00000000
## Avenula.pratensis 0.0256410256 0.00000000
## Bellis.perennis 0.2199043894 0.11016949
## Betula.pubescens 0.0256410256 0.00000000
## Blackstonia.perfoliata 0.0256410256 0.00000000
## Brachythecium.albicans 0.0256410256 0.00000000
## Brachythecium.glareosum 0.0256410256 0.00000000
## Brachythecium.mildeanum 0.1025641026 0.00000000
## Brachythecium.rutabulum 0.0338655056 0.36792453
## Briza.media 0.0003219331 0.49686115
## Bromus.hordeaceus 0.0256410256 0.00000000
## Bryum.c.f..caespiticium 0.0256410256 0.00000000
## Bryum.c.f..pallescens 0.0769230769 0.00000000
## Bryum.capillare 0.0256410256 0.00000000
## Bryum.spp. 0.0769230769 0.00000000
## Calliergonella.cupsidata 0.0897217490 0.73083475
## Calypogeia.arguta 0.0257945647 0.42814371
## Campanula.rotundifolia 0.0256410256 0.00000000
## Carex.distans 0.0512820513 0.00000000
## Carex.flacca 0.1794871795 0.00000000
## Carex.panicea 0.0256410256 0.00000000
## Carlina.vulgaris 0.2564102564 0.00000000
## Centaurea.nigra 0.0512820513 0.00000000
## Centaurium.erythraea 0.0512820513 0.00000000
## Centaurium.littorale 0.1025641026 0.00000000
## Centaurium.pulchellum 0.0256410256 0.00000000
## Cerastium.fontanum 0.0586080586 0.30952381
## Chamaenerion.angustifolium 0.0256410256 0.00000000
## Cirriphyllum.piliferum 0.0256410256 0.00000000
## Cirsium.arvense 0.0769230769 0.00000000
## Cirsium.palustre 0.0512820513 0.00000000
## Crepis.capillaris 0.0512820513 0.00000000
## Cynosurus.cristatus 0.0769230769 0.00000000
## Dactylis.glomerata 0.1538461538 0.00000000
## Dactylorhiza.fuchsii 0.0512820513 0.00000000
## Danthonia.decumbens 0.0256410256 0.00000000
## Daucus.carrota 0.0512820513 0.00000000
## Dicranella.spp. 0.0256410256 0.00000000
## Dicranum.scoparium 0.0074166240 0.46384396
## Epilobium.montanum 0.0769230769 0.00000000
## Equisetum.arvense 0.0769230769 0.00000000
## Equisteum.variegatum 0.0256410256 0.00000000
## Erigeron.acer 0.0512820513 0.00000000
## Euphrasia.agg 0.0721997301 0.35921053
## Festuca.ovina 0.1794871795 0.00000000
## Festuca.rubra 0.3412303793 0.02471483
## Festuca.rubra.agg. 0.0256410256 0.00000000
## Filipendula.ulmaria 0.0769230769 0.00000000
## Fissidens.adianthoides 0.0256410256 0.00000000
## Fissidens.dubius 0.0512820513 0.00000000
## Fissidens.exilis 0.0256410256 0.00000000
## Fragaria.vesca 0.1538461538 0.00000000
## Galium.aparine 0.0256410256 0.00000000
## Galium.arvense 0.0256410256 0.00000000
## Galium.saxatile 0.0256410256 0.00000000
## Galium.verum 0.0038333759 0.47508306
## Geum.urbanum 0.0256410256 0.00000000
## Glechoma.hederacea 0.0256410256 0.00000000
## Helicotrichon.spp. 0.0256410256 0.00000000
## Heracleum.sphondylium 0.0769230769 0.00000000
## Hieracium.spp. 0.0256410256 0.00000000
## Holcus.spp. 0.5384615385 0.00000000
## Holcus.lanatus 0.2608566770 0.03757225
## Holcus.mollis 0.0039221454 0.48470363
## Homalothecium.lutescens 0.0512820513 0.00000000
## Hylocomium.splendens 0.0336324406 0.39069457
## Hypericum.perforatum 0.1538461538 0.00000000
## Hypnum.cupressiforme 0.1379857256 0.20103093
## Hypnum.imponens 0.0000000000 0.50000000
## Hypnum.jutlandicum 0.0769230769 0.00000000
## Hypochaeris.radicata 0.0256410256 0.00000000
## Kindbergia.praelonga 0.0301659125 0.38235294
## Lathyrus.pratensis 0.0769230769 0.00000000
## Leontodon.hispidus 0.1282051282 0.00000000
## Leontodon.saxatilis 0.0256410256 0.00000000
## Leucanthemum.vulgare 0.3589743590 0.00000000
## Linum.catharticum 0.1282051282 0.00000000
## Lolium.perenne 0.1025641026 0.00000000
## Lophocolea.semiteres 0.0256410256 0.00000000
## Lotus.corniculatus 0.3218884940 0.13077496
## Luzula.multiflora 0.0256410256 0.00000000
## Lysimachia.maritima 0.0512820513 0.00000000
## Medicago.lupulina 0.1282051282 0.00000000
## Myosotis.arvensis 0.1282051282 0.00000000
## Ononis.repens 0.2051282051 0.00000000
## Oxalis.acetosella 0.0256410256 0.00000000
## Pastinaca.sativa 0.0256410256 0.00000000
## Pentaglottis.sempervirens 0.0256410256 0.00000000
## Pillosella.officinarum 0.3076923077 0.00000000
## Plantago.coronopus 0.1025641026 0.00000000
## Plantago.lanceolata 0.3333333333 0.00000000
## Pleurozium.schreberi 0.0130932897 0.41489362
## Poa.annua 0.0769230769 0.00000000
## Poa.spp. 0.0256410256 0.00000000
## Polytrichum.commune 0.0000000000 0.50000000
## Polytrichum.commune.agg. 0.0000000000 0.50000000
## Polytrichum.formosum 0.0256410256 0.00000000
## Potentilla.reptans 0.1025641026 0.00000000
## Prunella.vulgaris 0.1282051282 0.00000000
## Pseudoscleropidum.purum 0.1375710118 0.11676647
## Pteridium.aquilinum 0.0769230769 0.00000000
## Ranunculus.acris 0.0256410256 0.00000000
## Ranunculus.repens 0.0769230769 0.00000000
## Reseda.lutea 0.0256410256 0.00000000
## Rhinanthus.minor 0.0256410256 0.00000000
## Rhizomnium.punctatum 0.0256410256 0.00000000
## Rhytidadelphus.squarrosus 0.1073888176 0.32549317
## Rhytidadelphus.triquetris 0.0512820513 0.00000000
## Rubus.fruticosus 0.0512820513 0.00000000
## Sanguisorba.minor.spp.minor 0.0038069645 0.42576419
## Saniona.uncinata 0.0012507817 0.47560976
## Sedum.anglicum 0.0256410256 0.00000000
## Senecio.jacobaea 0.0512820513 0.00000000
## Senecio.vulgaris 0.0256410256 0.00000000
## Sonchus.arvensis 0.0256410256 0.00000000
## Stachys.sylvatica 0.0512820513 0.00000000
## Stellaria.apetala 0.0256410256 0.00000000
## Taraxacum.agg. 0.1387631976 0.22941176
## Thuidium.tamariscinum 0.0104657248 0.39795918
## Thymus.polytrichus 0.2051282051 0.00000000
## Trichostomum.crispulum 0.1538461538 0.00000000
## Trifolium.campestre 0.0278919554 0.40935115
## Trifolium.dubium 0.0512820513 0.00000000
## Trifolium.pratense 0.1025641026 0.00000000
## Trifolium.repens 0.0428626100 0.29104478
## Trisetum.flavescens 0.1025641026 0.00000000
## Tussilago.farfara 0.0769230769 0.00000000
## Urtica.diocia 0.1025641026 0.00000000
## Veronica.officinalis 0.0256410256 0.00000000
## Vicia.sativa 0.0256410256 0.00000000
## Viola.riviniana 0.0256410256 0.00000000
## Weissia.controversa 0.0256410256 0.00000000
## Zygodon.stirtonii 0.0256410256 0.00000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 2 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 2
## Briza.media Bromus.hordeaceus
## 2 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 2 2
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 2
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 2 1
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 2 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 1
## Holcus.mollis Homalothecium.lutescens
## 2 1
## Hylocomium.splendens Hypericum.perforatum
## 2 1
## Hypnum.cupressiforme Hypnum.imponens
## 2 2
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 2 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 2 1
## Poa.spp. Polytrichum.commune
## 1 2
## Polytrichum.commune.agg. Polytrichum.formosum
## 2 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 2
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 2 2
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 2 2
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 2 1
## Trifolium.pratense Trifolium.repens
## 1 2
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.20512821 0.02564103
## Alchemilla.mollis Alopercus.pratensis
## 0.02564103 0.02564103
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.05128205 0.15384615
## Anthyllis.vulneraria Aphanes.arvensis
## 0.44677972 0.07692308
## Arrhenatherum.elatius Atrichum.undulatum
## 0.13806706 0.05128205
## Avenula.pratensis Bellis.perennis
## 0.02564103 0.21990439
## Betula.pubescens Blackstonia.perfoliata
## 0.02564103 0.02564103
## Brachythecium.albicans Brachythecium.glareosum
## 0.02564103 0.02564103
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.10256410 0.36792453
## Briza.media Bromus.hordeaceus
## 0.49686115 0.02564103
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.02564103 0.07692308
## Bryum.capillare Bryum.spp.
## 0.02564103 0.07692308
## Calliergonella.cupsidata Calypogeia.arguta
## 0.73083475 0.42814371
## Campanula.rotundifolia Carex.distans
## 0.02564103 0.05128205
## Carex.flacca Carex.panicea
## 0.17948718 0.02564103
## Carlina.vulgaris Centaurea.nigra
## 0.25641026 0.05128205
## Centaurium.erythraea Centaurium.littorale
## 0.05128205 0.10256410
## Centaurium.pulchellum Cerastium.fontanum
## 0.02564103 0.30952381
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.02564103 0.02564103
## Cirsium.arvense Cirsium.palustre
## 0.07692308 0.05128205
## Crepis.capillaris Cynosurus.cristatus
## 0.05128205 0.07692308
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.15384615 0.05128205
## Danthonia.decumbens Daucus.carrota
## 0.02564103 0.05128205
## Dicranella.spp. Dicranum.scoparium
## 0.02564103 0.46384396
## Epilobium.montanum Equisetum.arvense
## 0.07692308 0.07692308
## Equisteum.variegatum Erigeron.acer
## 0.02564103 0.05128205
## Euphrasia.agg Festuca.ovina
## 0.35921053 0.17948718
## Festuca.rubra Festuca.rubra.agg.
## 0.34123038 0.02564103
## Filipendula.ulmaria Fissidens.adianthoides
## 0.07692308 0.02564103
## Fissidens.dubius Fissidens.exilis
## 0.05128205 0.02564103
## Fragaria.vesca Galium.aparine
## 0.15384615 0.02564103
## Galium.arvense Galium.saxatile
## 0.02564103 0.02564103
## Galium.verum Geum.urbanum
## 0.47508306 0.02564103
## Glechoma.hederacea Helicotrichon.spp.
## 0.02564103 0.02564103
## Heracleum.sphondylium Hieracium.spp.
## 0.07692308 0.02564103
## Holcus.spp. Holcus.lanatus
## 0.53846154 0.26085668
## Holcus.mollis Homalothecium.lutescens
## 0.48470363 0.05128205
## Hylocomium.splendens Hypericum.perforatum
## 0.39069457 0.15384615
## Hypnum.cupressiforme Hypnum.imponens
## 0.20103093 0.50000000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.07692308 0.02564103
## Kindbergia.praelonga Lathyrus.pratensis
## 0.38235294 0.07692308
## Leontodon.hispidus Leontodon.saxatilis
## 0.12820513 0.02564103
## Leucanthemum.vulgare Linum.catharticum
## 0.35897436 0.12820513
## Lolium.perenne Lophocolea.semiteres
## 0.10256410 0.02564103
## Lotus.corniculatus Luzula.multiflora
## 0.32188849 0.02564103
## Lysimachia.maritima Medicago.lupulina
## 0.05128205 0.12820513
## Myosotis.arvensis Ononis.repens
## 0.12820513 0.20512821
## Oxalis.acetosella Pastinaca.sativa
## 0.02564103 0.02564103
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.02564103 0.30769231
## Plantago.coronopus Plantago.lanceolata
## 0.10256410 0.33333333
## Pleurozium.schreberi Poa.annua
## 0.41489362 0.07692308
## Poa.spp. Polytrichum.commune
## 0.02564103 0.50000000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.50000000 0.02564103
## Potentilla.reptans Prunella.vulgaris
## 0.10256410 0.12820513
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.13757101 0.07692308
## Ranunculus.acris Ranunculus.repens
## 0.02564103 0.07692308
## Reseda.lutea Rhinanthus.minor
## 0.02564103 0.02564103
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.02564103 0.32549317
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.05128205 0.05128205
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.42576419 0.47560976
## Sedum.anglicum Senecio.jacobaea
## 0.02564103 0.05128205
## Senecio.vulgaris Sonchus.arvensis
## 0.02564103 0.02564103
## Stachys.sylvatica Stellaria.apetala
## 0.05128205 0.02564103
## Taraxacum.agg. Thuidium.tamariscinum
## 0.22941176 0.39795918
## Thymus.polytrichus Trichostomum.crispulum
## 0.20512821 0.15384615
## Trifolium.campestre Trifolium.dubium
## 0.40935115 0.05128205
## Trifolium.pratense Trifolium.repens
## 0.10256410 0.29104478
## Trisetum.flavescens Tussilago.farfara
## 0.10256410 0.07692308
## Urtica.diocia Veronica.officinalis
## 0.10256410 0.02564103
## Vicia.sativa Viola.riviniana
## 0.02564103 0.02564103
## Weissia.controversa Zygodon.stirtonii
## 0.02564103 0.02564103
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.892 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.093 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 1.000 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.965
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 0.292
## Briza.media Bromus.hordeaceus
## 0.042 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.093 0.116
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.874 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.871 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.333
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.911 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 0.066
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.223 0.901
## Festuca.rubra Festuca.rubra.agg.
## 0.766 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 0.052 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.411 0.815
## Holcus.mollis Homalothecium.lutescens
## 0.067 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.179 0.975
## Hypnum.cupressiforme Hypnum.imponens
## 0.921 0.061
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.186 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.655 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.802 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.799
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.682
## Plantago.coronopus Plantago.lanceolata
## 0.942 0.712
## Pleurozium.schreberi Poa.annua
## 0.150 1.000
## Poa.spp. Polytrichum.commune
## 1.000 0.040
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.044 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1.000 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.811
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.090 0.101
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 0.165
## Thymus.polytrichus Trichostomum.crispulum
## 0.900 1.000
## Trifolium.campestre Trifolium.dubium
## 0.108 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 0.161
## Trisetum.flavescens Tussilago.farfara
## 0.923 1.000
## Urtica.diocia Veronica.officinalis
## 0.952 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Polytrichum commune has an indval score of 0.500 and a p value of 0.048. This species is #the indicator species for Illite
clustLangite <-cut(PlantChemistry1$Langite, 5, labels=FALSE)
LangiteIndval <- indval(as.matrix(PlantSpecies1), clustLangite, type= "long")
gr <- LangiteIndval$maxcls[LangiteIndval$pval<=0.05]
iv <- LangiteIndval$indcls[LangiteIndval$pval<=0.05]
pv <- LangiteIndval$pval[LangiteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[LangiteIndval$pval<=0.05]
LangiteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
LangiteIndvalsummary <- LangiteIndvalsummary[order(LangiteIndvalsummary$group,
-LangiteIndvalsummary$indval),]
print(LangiteIndvalsummary)
## group indval pvalue freq
## Thuidium.tamariscinum 2 0.9756098 0.027 8
## Anthoxanthum.odoratum 2 0.9510003 0.028 5
## Fragaria.vesca 2 0.9494827 0.031 1
## Hylocomium.splendens 2 0.9382788 0.027 6
## Bellis.perennis 2 0.9221902 0.027 1
## Crepis.capillaris 2 0.9090909 0.048 3
summary(indval(as.matrix(PlantSpecies1), clustLangite))
## cluster indicator_value probability
## Rhytidadelphus.triquetris 2 0.9756 0.050
## Thuidium.tamariscinum 2 0.9756 0.026
## Anthoxanthum.odoratum 2 0.9510 0.031
## Fragaria.vesca 2 0.9495 0.018
## Hylocomium.splendens 2 0.9383 0.024
## Bellis.perennis 2 0.9222 0.029
## Crepis.capillaris 2 0.9091 0.048
##
## Sum of probabilities = 126.529
##
## Sum of Indicator Values = 23.62
##
## Sum of Significant Indicator Values = 6.62
##
## Number of Significant Indicators = 7
##
## Significant Indicator Distribution
##
## 2
## 7
print(indval(as.matrix(PlantSpecies1), clustLangite))
## $relfrq
## 1 5
## Agrostis.spp. 0.200 0
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.025 0
## Alopercus.pratensis 0.025 0
## Angelica.sylvestris 0.050 0
## Anthoxanthum.odoratum 0.125 1
## Anthyllis.vulneraria 0.125 0
## Aphanes.arvensis 0.075 0
## Arrhenatherum.elatius 0.175 1
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.025 0
## Bellis.perennis 0.275 1
## Betula.pubescens 0.025 0
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.100 0
## Brachythecium.rutabulum 0.150 0
## Briza.media 0.075 0
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.025 0
## Bryum.c.f..pallescens 0.075 0
## Bryum.capillare 0.025 0
## Bryum.spp. 0.075 0
## Calliergonella.cupsidata 0.350 1
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.025 0
## Carex.distans 0.050 0
## Carex.flacca 0.175 0
## Carex.panicea 0.025 0
## Carlina.vulgaris 0.250 0
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.100 0
## Centaurium.pulchellum 0.025 0
## Cerastium.fontanum 0.175 0
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.025 0
## Cirsium.arvense 0.075 0
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.025 1
## Cynosurus.cristatus 0.075 0
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.050 0
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.100 1
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.075 0
## Equisteum.variegatum 0.025 0
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.275 0
## Festuca.ovina 0.175 0
## Festuca.rubra 0.375 0
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.075 0
## Fissidens.adianthoides 0.025 0
## Fissidens.dubius 0.050 0
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.125 1
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.100 0
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.025 0
## Holcus.spp. 0.525 0
## Holcus.lanatus 0.275 1
## Holcus.mollis 0.150 0
## Homalothecium.lutescens 0.050 0
## Hylocomium.splendens 0.150 1
## Hypericum.perforatum 0.125 1
## Hypnum.cupressiforme 0.225 1
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.025 0
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.075 0
## Leontodon.hispidus 0.125 0
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.325 1
## Linum.catharticum 0.125 0
## Lolium.perenne 0.100 0
## Lophocolea.semiteres 0.025 0
## Lotus.corniculatus 0.425 1
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.050 0
## Medicago.lupulina 0.125 0
## Myosotis.arvensis 0.125 0
## Ononis.repens 0.200 0
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.300 0
## Plantago.coronopus 0.100 0
## Plantago.lanceolata 0.300 1
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.075 0
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.100 0
## Prunella.vulgaris 0.125 0
## Pseudoscleropidum.purum 0.175 1
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.075 0
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.300 1
## Rhytidadelphus.triquetris 0.025 1
## Rubus.fruticosus 0.050 0
## Sanguisorba.minor.spp.minor 0.050 0
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.050 0
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.050 0
## Stellaria.apetala 0.025 0
## Taraxacum.agg. 0.275 0
## Thuidium.tamariscinum 0.050 1
## Thymus.polytrichus 0.200 0
## Trichostomum.crispulum 0.150 0
## Trifolium.campestre 0.175 0
## Trifolium.dubium 0.050 0
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.125 0
## Trisetum.flavescens 0.100 0
## Tussilago.farfara 0.075 0
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.025 0
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.025 0
## Zygodon.stirtonii 0.025 0
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.00000000
## Agrostis.canina 1.00000000 0.00000000
## Alchemilla.mollis 1.00000000 0.00000000
## Alopercus.pratensis 1.00000000 0.00000000
## Angelica.sylvestris 1.00000000 0.00000000
## Anthoxanthum.odoratum 0.04899971 0.95100029
## Anthyllis.vulneraria 1.00000000 0.00000000
## Aphanes.arvensis 1.00000000 0.00000000
## Arrhenatherum.elatius 0.44444444 0.55555556
## Atrichum.undulatum 1.00000000 0.00000000
## Avenula.pratensis 1.00000000 0.00000000
## Bellis.perennis 0.07780980 0.92219020
## Betula.pubescens 1.00000000 0.00000000
## Blackstonia.perfoliata 1.00000000 0.00000000
## Brachythecium.albicans 1.00000000 0.00000000
## Brachythecium.glareosum 1.00000000 0.00000000
## Brachythecium.mildeanum 1.00000000 0.00000000
## Brachythecium.rutabulum 1.00000000 0.00000000
## Briza.media 1.00000000 0.00000000
## Bromus.hordeaceus 1.00000000 0.00000000
## Bryum.c.f..caespiticium 1.00000000 0.00000000
## Bryum.c.f..pallescens 1.00000000 0.00000000
## Bryum.capillare 1.00000000 0.00000000
## Bryum.spp. 1.00000000 0.00000000
## Calliergonella.cupsidata 0.68992248 0.31007752
## Calypogeia.arguta 1.00000000 0.00000000
## Campanula.rotundifolia 1.00000000 0.00000000
## Carex.distans 1.00000000 0.00000000
## Carex.flacca 1.00000000 0.00000000
## Carex.panicea 1.00000000 0.00000000
## Carlina.vulgaris 1.00000000 0.00000000
## Centaurea.nigra 1.00000000 0.00000000
## Centaurium.erythraea 1.00000000 0.00000000
## Centaurium.littorale 1.00000000 0.00000000
## Centaurium.pulchellum 1.00000000 0.00000000
## Cerastium.fontanum 1.00000000 0.00000000
## Chamaenerion.angustifolium 1.00000000 0.00000000
## Cirriphyllum.piliferum 1.00000000 0.00000000
## Cirsium.arvense 1.00000000 0.00000000
## Cirsium.palustre 1.00000000 0.00000000
## Crepis.capillaris 0.09090909 0.90909091
## Cynosurus.cristatus 1.00000000 0.00000000
## Dactylis.glomerata 1.00000000 0.00000000
## Dactylorhiza.fuchsii 1.00000000 0.00000000
## Danthonia.decumbens 1.00000000 0.00000000
## Daucus.carrota 1.00000000 0.00000000
## Dicranella.spp. 1.00000000 0.00000000
## Dicranum.scoparium 0.22480620 0.77519380
## Epilobium.montanum 1.00000000 0.00000000
## Equisetum.arvense 1.00000000 0.00000000
## Equisteum.variegatum 1.00000000 0.00000000
## Erigeron.acer 1.00000000 0.00000000
## Euphrasia.agg 1.00000000 0.00000000
## Festuca.ovina 1.00000000 0.00000000
## Festuca.rubra 1.00000000 0.00000000
## Festuca.rubra.agg. 1.00000000 0.00000000
## Filipendula.ulmaria 1.00000000 0.00000000
## Fissidens.adianthoides 1.00000000 0.00000000
## Fissidens.dubius 1.00000000 0.00000000
## Fissidens.exilis 1.00000000 0.00000000
## Fragaria.vesca 0.05051735 0.94948265
## Galium.aparine 1.00000000 0.00000000
## Galium.arvense 1.00000000 0.00000000
## Galium.saxatile 1.00000000 0.00000000
## Galium.verum 1.00000000 0.00000000
## Geum.urbanum 1.00000000 0.00000000
## Glechoma.hederacea 1.00000000 0.00000000
## Helicotrichon.spp. 1.00000000 0.00000000
## Heracleum.sphondylium 1.00000000 0.00000000
## Hieracium.spp. 1.00000000 0.00000000
## Holcus.spp. 1.00000000 0.00000000
## Holcus.lanatus 0.15978995 0.84021005
## Holcus.mollis 1.00000000 0.00000000
## Homalothecium.lutescens 1.00000000 0.00000000
## Hylocomium.splendens 0.06172116 0.93827884
## Hypericum.perforatum 0.27272727 0.72727273
## Hypnum.cupressiforme 0.59595960 0.40404040
## Hypnum.imponens 1.00000000 0.00000000
## Hypnum.jutlandicum 1.00000000 0.00000000
## Hypochaeris.radicata 1.00000000 0.00000000
## Kindbergia.praelonga 1.00000000 0.00000000
## Lathyrus.pratensis 1.00000000 0.00000000
## Leontodon.hispidus 1.00000000 0.00000000
## Leontodon.saxatilis 1.00000000 0.00000000
## Leucanthemum.vulgare 0.24528302 0.75471698
## Linum.catharticum 1.00000000 0.00000000
## Lolium.perenne 1.00000000 0.00000000
## Lophocolea.semiteres 1.00000000 0.00000000
## Lotus.corniculatus 0.96183206 0.03816794
## Luzula.multiflora 1.00000000 0.00000000
## Lysimachia.maritima 1.00000000 0.00000000
## Medicago.lupulina 1.00000000 0.00000000
## Myosotis.arvensis 1.00000000 0.00000000
## Ononis.repens 1.00000000 0.00000000
## Oxalis.acetosella 1.00000000 0.00000000
## Pastinaca.sativa 1.00000000 0.00000000
## Pentaglottis.sempervirens 1.00000000 0.00000000
## Pillosella.officinarum 1.00000000 0.00000000
## Plantago.coronopus 1.00000000 0.00000000
## Plantago.lanceolata 0.12263210 0.87736790
## Pleurozium.schreberi 1.00000000 0.00000000
## Poa.annua 1.00000000 0.00000000
## Poa.spp. 1.00000000 0.00000000
## Polytrichum.commune 1.00000000 0.00000000
## Polytrichum.commune.agg. 1.00000000 0.00000000
## Polytrichum.formosum 1.00000000 0.00000000
## Potentilla.reptans 1.00000000 0.00000000
## Prunella.vulgaris 1.00000000 0.00000000
## Pseudoscleropidum.purum 0.07692308 0.92307692
## Pteridium.aquilinum 1.00000000 0.00000000
## Ranunculus.acris 1.00000000 0.00000000
## Ranunculus.repens 1.00000000 0.00000000
## Reseda.lutea 1.00000000 0.00000000
## Rhinanthus.minor 1.00000000 0.00000000
## Rhizomnium.punctatum 1.00000000 0.00000000
## Rhytidadelphus.squarrosus 0.15611814 0.84388186
## Rhytidadelphus.triquetris 0.02439024 0.97560976
## Rubus.fruticosus 1.00000000 0.00000000
## Sanguisorba.minor.spp.minor 1.00000000 0.00000000
## Saniona.uncinata 1.00000000 0.00000000
## Sedum.anglicum 1.00000000 0.00000000
## Senecio.jacobaea 1.00000000 0.00000000
## Senecio.vulgaris 1.00000000 0.00000000
## Sonchus.arvensis 1.00000000 0.00000000
## Stachys.sylvatica 1.00000000 0.00000000
## Stellaria.apetala 1.00000000 0.00000000
## Taraxacum.agg. 1.00000000 0.00000000
## Thuidium.tamariscinum 0.02439024 0.97560976
## Thymus.polytrichus 1.00000000 0.00000000
## Trichostomum.crispulum 1.00000000 0.00000000
## Trifolium.campestre 1.00000000 0.00000000
## Trifolium.dubium 1.00000000 0.00000000
## Trifolium.pratense 1.00000000 0.00000000
## Trifolium.repens 1.00000000 0.00000000
## Trisetum.flavescens 1.00000000 0.00000000
## Tussilago.farfara 1.00000000 0.00000000
## Urtica.diocia 1.00000000 0.00000000
## Veronica.officinalis 1.00000000 0.00000000
## Vicia.sativa 1.00000000 0.00000000
## Viola.riviniana 1.00000000 0.00000000
## Weissia.controversa 1.00000000 0.00000000
## Zygodon.stirtonii 1.00000000 0.00000000
##
## $indval
## 1 5
## Agrostis.spp. 0.2000000000 0.00000000
## Agrostis.canina 0.0250000000 0.00000000
## Alchemilla.mollis 0.0250000000 0.00000000
## Alopercus.pratensis 0.0250000000 0.00000000
## Angelica.sylvestris 0.0500000000 0.00000000
## Anthoxanthum.odoratum 0.0061249638 0.95100029
## Anthyllis.vulneraria 0.1250000000 0.00000000
## Aphanes.arvensis 0.0750000000 0.00000000
## Arrhenatherum.elatius 0.0777777778 0.55555556
## Atrichum.undulatum 0.0500000000 0.00000000
## Avenula.pratensis 0.0250000000 0.00000000
## Bellis.perennis 0.0213976945 0.92219020
## Betula.pubescens 0.0250000000 0.00000000
## Blackstonia.perfoliata 0.0250000000 0.00000000
## Brachythecium.albicans 0.0250000000 0.00000000
## Brachythecium.glareosum 0.0250000000 0.00000000
## Brachythecium.mildeanum 0.1000000000 0.00000000
## Brachythecium.rutabulum 0.1500000000 0.00000000
## Briza.media 0.0750000000 0.00000000
## Bromus.hordeaceus 0.0250000000 0.00000000
## Bryum.c.f..caespiticium 0.0250000000 0.00000000
## Bryum.c.f..pallescens 0.0750000000 0.00000000
## Bryum.capillare 0.0250000000 0.00000000
## Bryum.spp. 0.0750000000 0.00000000
## Calliergonella.cupsidata 0.2414728682 0.31007752
## Calypogeia.arguta 0.2000000000 0.00000000
## Campanula.rotundifolia 0.0250000000 0.00000000
## Carex.distans 0.0500000000 0.00000000
## Carex.flacca 0.1750000000 0.00000000
## Carex.panicea 0.0250000000 0.00000000
## Carlina.vulgaris 0.2500000000 0.00000000
## Centaurea.nigra 0.0500000000 0.00000000
## Centaurium.erythraea 0.0500000000 0.00000000
## Centaurium.littorale 0.1000000000 0.00000000
## Centaurium.pulchellum 0.0250000000 0.00000000
## Cerastium.fontanum 0.1750000000 0.00000000
## Chamaenerion.angustifolium 0.0250000000 0.00000000
## Cirriphyllum.piliferum 0.0250000000 0.00000000
## Cirsium.arvense 0.0750000000 0.00000000
## Cirsium.palustre 0.0500000000 0.00000000
## Crepis.capillaris 0.0022727273 0.90909091
## Cynosurus.cristatus 0.0750000000 0.00000000
## Dactylis.glomerata 0.1500000000 0.00000000
## Dactylorhiza.fuchsii 0.0500000000 0.00000000
## Danthonia.decumbens 0.0250000000 0.00000000
## Daucus.carrota 0.0500000000 0.00000000
## Dicranella.spp. 0.0250000000 0.00000000
## Dicranum.scoparium 0.0224806202 0.77519380
## Epilobium.montanum 0.0750000000 0.00000000
## Equisetum.arvense 0.0750000000 0.00000000
## Equisteum.variegatum 0.0250000000 0.00000000
## Erigeron.acer 0.0500000000 0.00000000
## Euphrasia.agg 0.2750000000 0.00000000
## Festuca.ovina 0.1750000000 0.00000000
## Festuca.rubra 0.3750000000 0.00000000
## Festuca.rubra.agg. 0.0250000000 0.00000000
## Filipendula.ulmaria 0.0750000000 0.00000000
## Fissidens.adianthoides 0.0250000000 0.00000000
## Fissidens.dubius 0.0500000000 0.00000000
## Fissidens.exilis 0.0250000000 0.00000000
## Fragaria.vesca 0.0063146683 0.94948265
## Galium.aparine 0.0250000000 0.00000000
## Galium.arvense 0.0250000000 0.00000000
## Galium.saxatile 0.0250000000 0.00000000
## Galium.verum 0.1000000000 0.00000000
## Geum.urbanum 0.0250000000 0.00000000
## Glechoma.hederacea 0.0250000000 0.00000000
## Helicotrichon.spp. 0.0250000000 0.00000000
## Heracleum.sphondylium 0.0750000000 0.00000000
## Hieracium.spp. 0.0250000000 0.00000000
## Holcus.spp. 0.5250000000 0.00000000
## Holcus.lanatus 0.0439422356 0.84021005
## Holcus.mollis 0.1500000000 0.00000000
## Homalothecium.lutescens 0.0500000000 0.00000000
## Hylocomium.splendens 0.0092581733 0.93827884
## Hypericum.perforatum 0.0340909091 0.72727273
## Hypnum.cupressiforme 0.1340909091 0.40404040
## Hypnum.imponens 0.0250000000 0.00000000
## Hypnum.jutlandicum 0.0750000000 0.00000000
## Hypochaeris.radicata 0.0250000000 0.00000000
## Kindbergia.praelonga 0.1500000000 0.00000000
## Lathyrus.pratensis 0.0750000000 0.00000000
## Leontodon.hispidus 0.1250000000 0.00000000
## Leontodon.saxatilis 0.0250000000 0.00000000
## Leucanthemum.vulgare 0.0797169811 0.75471698
## Linum.catharticum 0.1250000000 0.00000000
## Lolium.perenne 0.1000000000 0.00000000
## Lophocolea.semiteres 0.0250000000 0.00000000
## Lotus.corniculatus 0.4087786260 0.03816794
## Luzula.multiflora 0.0250000000 0.00000000
## Lysimachia.maritima 0.0500000000 0.00000000
## Medicago.lupulina 0.1250000000 0.00000000
## Myosotis.arvensis 0.1250000000 0.00000000
## Ononis.repens 0.2000000000 0.00000000
## Oxalis.acetosella 0.0250000000 0.00000000
## Pastinaca.sativa 0.0250000000 0.00000000
## Pentaglottis.sempervirens 0.0250000000 0.00000000
## Pillosella.officinarum 0.3000000000 0.00000000
## Plantago.coronopus 0.1000000000 0.00000000
## Plantago.lanceolata 0.0367896311 0.87736790
## Pleurozium.schreberi 0.1000000000 0.00000000
## Poa.annua 0.0750000000 0.00000000
## Poa.spp. 0.0250000000 0.00000000
## Polytrichum.commune 0.0250000000 0.00000000
## Polytrichum.commune.agg. 0.0250000000 0.00000000
## Polytrichum.formosum 0.0250000000 0.00000000
## Potentilla.reptans 0.1000000000 0.00000000
## Prunella.vulgaris 0.1250000000 0.00000000
## Pseudoscleropidum.purum 0.0134615385 0.92307692
## Pteridium.aquilinum 0.0750000000 0.00000000
## Ranunculus.acris 0.0250000000 0.00000000
## Ranunculus.repens 0.0750000000 0.00000000
## Reseda.lutea 0.0250000000 0.00000000
## Rhinanthus.minor 0.0250000000 0.00000000
## Rhizomnium.punctatum 0.0250000000 0.00000000
## Rhytidadelphus.squarrosus 0.0468354430 0.84388186
## Rhytidadelphus.triquetris 0.0006097561 0.97560976
## Rubus.fruticosus 0.0500000000 0.00000000
## Sanguisorba.minor.spp.minor 0.0500000000 0.00000000
## Saniona.uncinata 0.0500000000 0.00000000
## Sedum.anglicum 0.0250000000 0.00000000
## Senecio.jacobaea 0.0500000000 0.00000000
## Senecio.vulgaris 0.0250000000 0.00000000
## Sonchus.arvensis 0.0250000000 0.00000000
## Stachys.sylvatica 0.0500000000 0.00000000
## Stellaria.apetala 0.0250000000 0.00000000
## Taraxacum.agg. 0.2750000000 0.00000000
## Thuidium.tamariscinum 0.0012195122 0.97560976
## Thymus.polytrichus 0.2000000000 0.00000000
## Trichostomum.crispulum 0.1500000000 0.00000000
## Trifolium.campestre 0.1750000000 0.00000000
## Trifolium.dubium 0.0500000000 0.00000000
## Trifolium.pratense 0.1000000000 0.00000000
## Trifolium.repens 0.1250000000 0.00000000
## Trisetum.flavescens 0.1000000000 0.00000000
## Tussilago.farfara 0.0750000000 0.00000000
## Urtica.diocia 0.1000000000 0.00000000
## Veronica.officinalis 0.0250000000 0.00000000
## Vicia.sativa 0.0250000000 0.00000000
## Viola.riviniana 0.0250000000 0.00000000
## Weissia.controversa 0.0250000000 0.00000000
## Zygodon.stirtonii 0.0250000000 0.00000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 2
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 2 1
## Avenula.pratensis Bellis.perennis
## 1 2
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 2 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 2 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 2
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 1
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 2 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 2
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 2 2
## Hypnum.cupressiforme Hypnum.imponens
## 2 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 2 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 2
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 2 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 2
## Rhytidadelphus.triquetris Rubus.fruticosus
## 2 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 2
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 1 1
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.2000000 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 0.0250000 0.0250000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.0500000 0.9510003
## Anthyllis.vulneraria Aphanes.arvensis
## 0.1250000 0.0750000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.5555556 0.0500000
## Avenula.pratensis Bellis.perennis
## 0.0250000 0.9221902
## Betula.pubescens Blackstonia.perfoliata
## 0.0250000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.1000000 0.1500000
## Briza.media Bromus.hordeaceus
## 0.0750000 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.0250000 0.0750000
## Bryum.capillare Bryum.spp.
## 0.0250000 0.0750000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.3100775 0.2000000
## Campanula.rotundifolia Carex.distans
## 0.0250000 0.0500000
## Carex.flacca Carex.panicea
## 0.1750000 0.0250000
## Carlina.vulgaris Centaurea.nigra
## 0.2500000 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.1000000
## Centaurium.pulchellum Cerastium.fontanum
## 0.0250000 0.1750000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 0.0250000
## Cirsium.arvense Cirsium.palustre
## 0.0750000 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.9090909 0.0750000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.0500000
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.7751938
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.0750000
## Equisteum.variegatum Erigeron.acer
## 0.0250000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.2750000 0.1750000
## Festuca.rubra Festuca.rubra.agg.
## 0.3750000 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.0750000 0.0250000
## Fissidens.dubius Fissidens.exilis
## 0.0500000 0.0250000
## Fragaria.vesca Galium.aparine
## 0.9494827 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.1000000 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 0.0250000
## Holcus.spp. Holcus.lanatus
## 0.5250000 0.8402101
## Holcus.mollis Homalothecium.lutescens
## 0.1500000 0.0500000
## Hylocomium.splendens Hypericum.perforatum
## 0.9382788 0.7272727
## Hypnum.cupressiforme Hypnum.imponens
## 0.4040404 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 0.0250000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.0750000
## Leontodon.hispidus Leontodon.saxatilis
## 0.1250000 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.7547170 0.1250000
## Lolium.perenne Lophocolea.semiteres
## 0.1000000 0.0250000
## Lotus.corniculatus Luzula.multiflora
## 0.4087786 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.0500000 0.1250000
## Myosotis.arvensis Ononis.repens
## 0.1250000 0.2000000
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.3000000
## Plantago.coronopus Plantago.lanceolata
## 0.1000000 0.8773679
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.0750000
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.1000000 0.1250000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.9230769 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.0750000
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.8438819
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.9756098 0.0500000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.0500000 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.0500000
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.0500000 0.0250000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.2750000 0.9756098
## Thymus.polytrichus Trichostomum.crispulum
## 0.2000000 0.1500000
## Trifolium.campestre Trifolium.dubium
## 0.1750000 0.0500000
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.1250000
## Trisetum.flavescens Tussilago.farfara
## 0.1000000 0.0750000
## Urtica.diocia Veronica.officinalis
## 0.1000000 0.0250000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 0.0250000 0.0250000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1.000 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 0.023
## Anthyllis.vulneraria Aphanes.arvensis
## 1.000 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.149 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.014
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 1.000 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.976 1.000
## Carlina.vulgaris Centaurea.nigra
## 1.000 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 1.000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 0.043 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 0.126
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.949 1.000
## Festuca.rubra Festuca.rubra.agg.
## 0.905 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 0.028 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 1.000 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.793 0.095
## Holcus.mollis Homalothecium.lutescens
## 0.983 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.018 0.089
## Hypnum.cupressiforme Hypnum.imponens
## 0.225 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.144 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.881 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.915
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.871
## Plantago.coronopus Plantago.lanceolata
## 1.000 0.069
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.078 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.061
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.052 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 0.027
## Thymus.polytrichus Trichostomum.crispulum
## 1.000 1.000
## Trifolium.campestre Trifolium.dubium
## 1.000 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 1.000
## Trisetum.flavescens Tussilago.farfara
## 1.000 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Thuidium tamarascinum has a high indval score of 0.976 and a p value of 0.032. This species #is the indicator species for Langite.
clustLinnaeite <-cut(PlantChemistry1$Linnaeite, 5, labels=FALSE)
LinnaeiteIndval <- indval(as.matrix(PlantSpecies1), clustLinnaeite, type= "long")
gr <- LinnaeiteIndval$maxcls[LinnaeiteIndval$pval<=0.05]
iv <- LinnaeiteIndval$indcls[LinnaeiteIndval$pval<=0.05]
pv <- LinnaeiteIndval$pval[LinnaeiteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[LinnaeiteIndval$pval<=0.05]
LinnaeiteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
LinnaeiteIndvalsummary <- LinnaeiteIndvalsummary[order(LinnaeiteIndvalsummary$group,
-LinnaeiteIndvalsummary$indval),]
print(LinnaeiteIndvalsummary)
## group indval pvalue freq
## Zygodon.stirtonii 2 1 0.027 NA
summary(indval(as.matrix(PlantSpecies1), clustLinnaeite))
## cluster indicator_value probability
## Zygodon.stirtonii 2 1 0.021
##
## Sum of probabilities = 134.93
##
## Sum of Indicator Values = 16.72
##
## Sum of Significant Indicator Values = 1
##
## Number of Significant Indicators = 1
##
## Significant Indicator Distribution
##
## 2
## 1
print(indval(as.matrix(PlantSpecies1), clustLinnaeite))
## $relfrq
## 1 5
## Agrostis.spp. 0.200 0
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.025 0
## Alopercus.pratensis 0.025 0
## Angelica.sylvestris 0.050 0
## Anthoxanthum.odoratum 0.150 0
## Anthyllis.vulneraria 0.125 0
## Aphanes.arvensis 0.075 0
## Arrhenatherum.elatius 0.200 0
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.025 0
## Bellis.perennis 0.300 0
## Betula.pubescens 0.025 0
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.100 0
## Brachythecium.rutabulum 0.150 0
## Briza.media 0.075 0
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.025 0
## Bryum.c.f..pallescens 0.075 0
## Bryum.capillare 0.025 0
## Bryum.spp. 0.075 0
## Calliergonella.cupsidata 0.375 0
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.025 0
## Carex.distans 0.050 0
## Carex.flacca 0.175 0
## Carex.panicea 0.025 0
## Carlina.vulgaris 0.225 1
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.100 0
## Centaurium.pulchellum 0.025 0
## Cerastium.fontanum 0.175 0
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.025 0
## Cirsium.arvense 0.075 0
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.050 0
## Cynosurus.cristatus 0.075 0
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.050 0
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.125 0
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.075 0
## Equisteum.variegatum 0.025 0
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.275 0
## Festuca.ovina 0.175 0
## Festuca.rubra 0.375 0
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.075 0
## Fissidens.adianthoides 0.025 0
## Fissidens.dubius 0.050 0
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.150 0
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.100 0
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.025 0
## Holcus.spp. 0.500 1
## Holcus.lanatus 0.300 0
## Holcus.mollis 0.150 0
## Homalothecium.lutescens 0.050 0
## Hylocomium.splendens 0.175 0
## Hypericum.perforatum 0.150 0
## Hypnum.cupressiforme 0.250 0
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.025 0
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.075 0
## Leontodon.hispidus 0.100 1
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.350 0
## Linum.catharticum 0.100 1
## Lolium.perenne 0.100 0
## Lophocolea.semiteres 0.025 0
## Lotus.corniculatus 0.450 0
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.050 0
## Medicago.lupulina 0.125 0
## Myosotis.arvensis 0.125 0
## Ononis.repens 0.200 0
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.300 0
## Plantago.coronopus 0.100 0
## Plantago.lanceolata 0.325 0
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.075 0
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.100 0
## Prunella.vulgaris 0.125 0
## Pseudoscleropidum.purum 0.200 0
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.075 0
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.325 0
## Rhytidadelphus.triquetris 0.050 0
## Rubus.fruticosus 0.050 0
## Sanguisorba.minor.spp.minor 0.050 0
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.050 0
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.050 0
## Stellaria.apetala 0.025 0
## Taraxacum.agg. 0.250 1
## Thuidium.tamariscinum 0.075 0
## Thymus.polytrichus 0.175 1
## Trichostomum.crispulum 0.150 0
## Trifolium.campestre 0.175 0
## Trifolium.dubium 0.050 0
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.125 0
## Trisetum.flavescens 0.100 0
## Tussilago.farfara 0.075 0
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.025 0
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.025 0
## Zygodon.stirtonii 0.000 1
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.0000000
## Agrostis.canina 1.00000000 0.0000000
## Alchemilla.mollis 1.00000000 0.0000000
## Alopercus.pratensis 1.00000000 0.0000000
## Angelica.sylvestris 1.00000000 0.0000000
## Anthoxanthum.odoratum 1.00000000 0.0000000
## Anthyllis.vulneraria 1.00000000 0.0000000
## Aphanes.arvensis 1.00000000 0.0000000
## Arrhenatherum.elatius 1.00000000 0.0000000
## Atrichum.undulatum 1.00000000 0.0000000
## Avenula.pratensis 1.00000000 0.0000000
## Bellis.perennis 1.00000000 0.0000000
## Betula.pubescens 1.00000000 0.0000000
## Blackstonia.perfoliata 1.00000000 0.0000000
## Brachythecium.albicans 1.00000000 0.0000000
## Brachythecium.glareosum 1.00000000 0.0000000
## Brachythecium.mildeanum 1.00000000 0.0000000
## Brachythecium.rutabulum 1.00000000 0.0000000
## Briza.media 1.00000000 0.0000000
## Bromus.hordeaceus 1.00000000 0.0000000
## Bryum.c.f..caespiticium 1.00000000 0.0000000
## Bryum.c.f..pallescens 1.00000000 0.0000000
## Bryum.capillare 1.00000000 0.0000000
## Bryum.spp. 1.00000000 0.0000000
## Calliergonella.cupsidata 1.00000000 0.0000000
## Calypogeia.arguta 1.00000000 0.0000000
## Campanula.rotundifolia 1.00000000 0.0000000
## Carex.distans 1.00000000 0.0000000
## Carex.flacca 1.00000000 0.0000000
## Carex.panicea 1.00000000 0.0000000
## Carlina.vulgaris 0.51219512 0.4878049
## Centaurea.nigra 1.00000000 0.0000000
## Centaurium.erythraea 1.00000000 0.0000000
## Centaurium.littorale 1.00000000 0.0000000
## Centaurium.pulchellum 1.00000000 0.0000000
## Cerastium.fontanum 1.00000000 0.0000000
## Chamaenerion.angustifolium 1.00000000 0.0000000
## Cirriphyllum.piliferum 1.00000000 0.0000000
## Cirsium.arvense 1.00000000 0.0000000
## Cirsium.palustre 1.00000000 0.0000000
## Crepis.capillaris 1.00000000 0.0000000
## Cynosurus.cristatus 1.00000000 0.0000000
## Dactylis.glomerata 1.00000000 0.0000000
## Dactylorhiza.fuchsii 1.00000000 0.0000000
## Danthonia.decumbens 1.00000000 0.0000000
## Daucus.carrota 1.00000000 0.0000000
## Dicranella.spp. 1.00000000 0.0000000
## Dicranum.scoparium 1.00000000 0.0000000
## Epilobium.montanum 1.00000000 0.0000000
## Equisetum.arvense 1.00000000 0.0000000
## Equisteum.variegatum 1.00000000 0.0000000
## Erigeron.acer 1.00000000 0.0000000
## Euphrasia.agg 1.00000000 0.0000000
## Festuca.ovina 1.00000000 0.0000000
## Festuca.rubra 1.00000000 0.0000000
## Festuca.rubra.agg. 1.00000000 0.0000000
## Filipendula.ulmaria 1.00000000 0.0000000
## Fissidens.adianthoides 1.00000000 0.0000000
## Fissidens.dubius 1.00000000 0.0000000
## Fissidens.exilis 1.00000000 0.0000000
## Fragaria.vesca 1.00000000 0.0000000
## Galium.aparine 1.00000000 0.0000000
## Galium.arvense 1.00000000 0.0000000
## Galium.saxatile 1.00000000 0.0000000
## Galium.verum 1.00000000 0.0000000
## Geum.urbanum 1.00000000 0.0000000
## Glechoma.hederacea 1.00000000 0.0000000
## Helicotrichon.spp. 1.00000000 0.0000000
## Heracleum.sphondylium 1.00000000 0.0000000
## Hieracium.spp. 1.00000000 0.0000000
## Holcus.spp. 0.20081967 0.7991803
## Holcus.lanatus 1.00000000 0.0000000
## Holcus.mollis 1.00000000 0.0000000
## Homalothecium.lutescens 1.00000000 0.0000000
## Hylocomium.splendens 1.00000000 0.0000000
## Hypericum.perforatum 1.00000000 0.0000000
## Hypnum.cupressiforme 1.00000000 0.0000000
## Hypnum.imponens 1.00000000 0.0000000
## Hypnum.jutlandicum 1.00000000 0.0000000
## Hypochaeris.radicata 1.00000000 0.0000000
## Kindbergia.praelonga 1.00000000 0.0000000
## Lathyrus.pratensis 1.00000000 0.0000000
## Leontodon.hispidus 0.57219251 0.4278075
## Leontodon.saxatilis 1.00000000 0.0000000
## Leucanthemum.vulgare 1.00000000 0.0000000
## Linum.catharticum 0.05511811 0.9448819
## Lolium.perenne 1.00000000 0.0000000
## Lophocolea.semiteres 1.00000000 0.0000000
## Lotus.corniculatus 1.00000000 0.0000000
## Luzula.multiflora 1.00000000 0.0000000
## Lysimachia.maritima 1.00000000 0.0000000
## Medicago.lupulina 1.00000000 0.0000000
## Myosotis.arvensis 1.00000000 0.0000000
## Ononis.repens 1.00000000 0.0000000
## Oxalis.acetosella 1.00000000 0.0000000
## Pastinaca.sativa 1.00000000 0.0000000
## Pentaglottis.sempervirens 1.00000000 0.0000000
## Pillosella.officinarum 1.00000000 0.0000000
## Plantago.coronopus 1.00000000 0.0000000
## Plantago.lanceolata 1.00000000 0.0000000
## Pleurozium.schreberi 1.00000000 0.0000000
## Poa.annua 1.00000000 0.0000000
## Poa.spp. 1.00000000 0.0000000
## Polytrichum.commune 1.00000000 0.0000000
## Polytrichum.commune.agg. 1.00000000 0.0000000
## Polytrichum.formosum 1.00000000 0.0000000
## Potentilla.reptans 1.00000000 0.0000000
## Prunella.vulgaris 1.00000000 0.0000000
## Pseudoscleropidum.purum 1.00000000 0.0000000
## Pteridium.aquilinum 1.00000000 0.0000000
## Ranunculus.acris 1.00000000 0.0000000
## Ranunculus.repens 1.00000000 0.0000000
## Reseda.lutea 1.00000000 0.0000000
## Rhinanthus.minor 1.00000000 0.0000000
## Rhizomnium.punctatum 1.00000000 0.0000000
## Rhytidadelphus.squarrosus 1.00000000 0.0000000
## Rhytidadelphus.triquetris 1.00000000 0.0000000
## Rubus.fruticosus 1.00000000 0.0000000
## Sanguisorba.minor.spp.minor 1.00000000 0.0000000
## Saniona.uncinata 1.00000000 0.0000000
## Sedum.anglicum 1.00000000 0.0000000
## Senecio.jacobaea 1.00000000 0.0000000
## Senecio.vulgaris 1.00000000 0.0000000
## Sonchus.arvensis 1.00000000 0.0000000
## Stachys.sylvatica 1.00000000 0.0000000
## Stellaria.apetala 1.00000000 0.0000000
## Taraxacum.agg. 0.21568627 0.7843137
## Thuidium.tamariscinum 1.00000000 0.0000000
## Thymus.polytrichus 0.77830562 0.2216944
## Trichostomum.crispulum 1.00000000 0.0000000
## Trifolium.campestre 1.00000000 0.0000000
## Trifolium.dubium 1.00000000 0.0000000
## Trifolium.pratense 1.00000000 0.0000000
## Trifolium.repens 1.00000000 0.0000000
## Trisetum.flavescens 1.00000000 0.0000000
## Tussilago.farfara 1.00000000 0.0000000
## Urtica.diocia 1.00000000 0.0000000
## Veronica.officinalis 1.00000000 0.0000000
## Vicia.sativa 1.00000000 0.0000000
## Viola.riviniana 1.00000000 0.0000000
## Weissia.controversa 1.00000000 0.0000000
## Zygodon.stirtonii 0.00000000 1.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.200000000 0.0000000
## Agrostis.canina 0.025000000 0.0000000
## Alchemilla.mollis 0.025000000 0.0000000
## Alopercus.pratensis 0.025000000 0.0000000
## Angelica.sylvestris 0.050000000 0.0000000
## Anthoxanthum.odoratum 0.150000000 0.0000000
## Anthyllis.vulneraria 0.125000000 0.0000000
## Aphanes.arvensis 0.075000000 0.0000000
## Arrhenatherum.elatius 0.200000000 0.0000000
## Atrichum.undulatum 0.050000000 0.0000000
## Avenula.pratensis 0.025000000 0.0000000
## Bellis.perennis 0.300000000 0.0000000
## Betula.pubescens 0.025000000 0.0000000
## Blackstonia.perfoliata 0.025000000 0.0000000
## Brachythecium.albicans 0.025000000 0.0000000
## Brachythecium.glareosum 0.025000000 0.0000000
## Brachythecium.mildeanum 0.100000000 0.0000000
## Brachythecium.rutabulum 0.150000000 0.0000000
## Briza.media 0.075000000 0.0000000
## Bromus.hordeaceus 0.025000000 0.0000000
## Bryum.c.f..caespiticium 0.025000000 0.0000000
## Bryum.c.f..pallescens 0.075000000 0.0000000
## Bryum.capillare 0.025000000 0.0000000
## Bryum.spp. 0.075000000 0.0000000
## Calliergonella.cupsidata 0.375000000 0.0000000
## Calypogeia.arguta 0.200000000 0.0000000
## Campanula.rotundifolia 0.025000000 0.0000000
## Carex.distans 0.050000000 0.0000000
## Carex.flacca 0.175000000 0.0000000
## Carex.panicea 0.025000000 0.0000000
## Carlina.vulgaris 0.115243902 0.4878049
## Centaurea.nigra 0.050000000 0.0000000
## Centaurium.erythraea 0.050000000 0.0000000
## Centaurium.littorale 0.100000000 0.0000000
## Centaurium.pulchellum 0.025000000 0.0000000
## Cerastium.fontanum 0.175000000 0.0000000
## Chamaenerion.angustifolium 0.025000000 0.0000000
## Cirriphyllum.piliferum 0.025000000 0.0000000
## Cirsium.arvense 0.075000000 0.0000000
## Cirsium.palustre 0.050000000 0.0000000
## Crepis.capillaris 0.050000000 0.0000000
## Cynosurus.cristatus 0.075000000 0.0000000
## Dactylis.glomerata 0.150000000 0.0000000
## Dactylorhiza.fuchsii 0.050000000 0.0000000
## Danthonia.decumbens 0.025000000 0.0000000
## Daucus.carrota 0.050000000 0.0000000
## Dicranella.spp. 0.025000000 0.0000000
## Dicranum.scoparium 0.125000000 0.0000000
## Epilobium.montanum 0.075000000 0.0000000
## Equisetum.arvense 0.075000000 0.0000000
## Equisteum.variegatum 0.025000000 0.0000000
## Erigeron.acer 0.050000000 0.0000000
## Euphrasia.agg 0.275000000 0.0000000
## Festuca.ovina 0.175000000 0.0000000
## Festuca.rubra 0.375000000 0.0000000
## Festuca.rubra.agg. 0.025000000 0.0000000
## Filipendula.ulmaria 0.075000000 0.0000000
## Fissidens.adianthoides 0.025000000 0.0000000
## Fissidens.dubius 0.050000000 0.0000000
## Fissidens.exilis 0.025000000 0.0000000
## Fragaria.vesca 0.150000000 0.0000000
## Galium.aparine 0.025000000 0.0000000
## Galium.arvense 0.025000000 0.0000000
## Galium.saxatile 0.025000000 0.0000000
## Galium.verum 0.100000000 0.0000000
## Geum.urbanum 0.025000000 0.0000000
## Glechoma.hederacea 0.025000000 0.0000000
## Helicotrichon.spp. 0.025000000 0.0000000
## Heracleum.sphondylium 0.075000000 0.0000000
## Hieracium.spp. 0.025000000 0.0000000
## Holcus.spp. 0.100409836 0.7991803
## Holcus.lanatus 0.300000000 0.0000000
## Holcus.mollis 0.150000000 0.0000000
## Homalothecium.lutescens 0.050000000 0.0000000
## Hylocomium.splendens 0.175000000 0.0000000
## Hypericum.perforatum 0.150000000 0.0000000
## Hypnum.cupressiforme 0.250000000 0.0000000
## Hypnum.imponens 0.025000000 0.0000000
## Hypnum.jutlandicum 0.075000000 0.0000000
## Hypochaeris.radicata 0.025000000 0.0000000
## Kindbergia.praelonga 0.150000000 0.0000000
## Lathyrus.pratensis 0.075000000 0.0000000
## Leontodon.hispidus 0.057219251 0.4278075
## Leontodon.saxatilis 0.025000000 0.0000000
## Leucanthemum.vulgare 0.350000000 0.0000000
## Linum.catharticum 0.005511811 0.9448819
## Lolium.perenne 0.100000000 0.0000000
## Lophocolea.semiteres 0.025000000 0.0000000
## Lotus.corniculatus 0.450000000 0.0000000
## Luzula.multiflora 0.025000000 0.0000000
## Lysimachia.maritima 0.050000000 0.0000000
## Medicago.lupulina 0.125000000 0.0000000
## Myosotis.arvensis 0.125000000 0.0000000
## Ononis.repens 0.200000000 0.0000000
## Oxalis.acetosella 0.025000000 0.0000000
## Pastinaca.sativa 0.025000000 0.0000000
## Pentaglottis.sempervirens 0.025000000 0.0000000
## Pillosella.officinarum 0.300000000 0.0000000
## Plantago.coronopus 0.100000000 0.0000000
## Plantago.lanceolata 0.325000000 0.0000000
## Pleurozium.schreberi 0.100000000 0.0000000
## Poa.annua 0.075000000 0.0000000
## Poa.spp. 0.025000000 0.0000000
## Polytrichum.commune 0.025000000 0.0000000
## Polytrichum.commune.agg. 0.025000000 0.0000000
## Polytrichum.formosum 0.025000000 0.0000000
## Potentilla.reptans 0.100000000 0.0000000
## Prunella.vulgaris 0.125000000 0.0000000
## Pseudoscleropidum.purum 0.200000000 0.0000000
## Pteridium.aquilinum 0.075000000 0.0000000
## Ranunculus.acris 0.025000000 0.0000000
## Ranunculus.repens 0.075000000 0.0000000
## Reseda.lutea 0.025000000 0.0000000
## Rhinanthus.minor 0.025000000 0.0000000
## Rhizomnium.punctatum 0.025000000 0.0000000
## Rhytidadelphus.squarrosus 0.325000000 0.0000000
## Rhytidadelphus.triquetris 0.050000000 0.0000000
## Rubus.fruticosus 0.050000000 0.0000000
## Sanguisorba.minor.spp.minor 0.050000000 0.0000000
## Saniona.uncinata 0.050000000 0.0000000
## Sedum.anglicum 0.025000000 0.0000000
## Senecio.jacobaea 0.050000000 0.0000000
## Senecio.vulgaris 0.025000000 0.0000000
## Sonchus.arvensis 0.025000000 0.0000000
## Stachys.sylvatica 0.050000000 0.0000000
## Stellaria.apetala 0.025000000 0.0000000
## Taraxacum.agg. 0.053921569 0.7843137
## Thuidium.tamariscinum 0.075000000 0.0000000
## Thymus.polytrichus 0.136203484 0.2216944
## Trichostomum.crispulum 0.150000000 0.0000000
## Trifolium.campestre 0.175000000 0.0000000
## Trifolium.dubium 0.050000000 0.0000000
## Trifolium.pratense 0.100000000 0.0000000
## Trifolium.repens 0.125000000 0.0000000
## Trisetum.flavescens 0.100000000 0.0000000
## Tussilago.farfara 0.075000000 0.0000000
## Urtica.diocia 0.100000000 0.0000000
## Veronica.officinalis 0.025000000 0.0000000
## Vicia.sativa 0.025000000 0.0000000
## Viola.riviniana 0.025000000 0.0000000
## Weissia.controversa 0.025000000 0.0000000
## Zygodon.stirtonii 0.000000000 1.0000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 2 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 1
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 2 1
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 2 1
## Leucanthemum.vulgare Linum.catharticum
## 1 2
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 2 1
## Thymus.polytrichus Trichostomum.crispulum
## 2 1
## Trifolium.campestre Trifolium.dubium
## 1 1
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 2
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.2000000 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 0.0250000 0.0250000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.0500000 0.1500000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.1250000 0.0750000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.2000000 0.0500000
## Avenula.pratensis Bellis.perennis
## 0.0250000 0.3000000
## Betula.pubescens Blackstonia.perfoliata
## 0.0250000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.1000000 0.1500000
## Briza.media Bromus.hordeaceus
## 0.0750000 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.0250000 0.0750000
## Bryum.capillare Bryum.spp.
## 0.0250000 0.0750000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.3750000 0.2000000
## Campanula.rotundifolia Carex.distans
## 0.0250000 0.0500000
## Carex.flacca Carex.panicea
## 0.1750000 0.0250000
## Carlina.vulgaris Centaurea.nigra
## 0.4878049 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.1000000
## Centaurium.pulchellum Cerastium.fontanum
## 0.0250000 0.1750000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 0.0250000
## Cirsium.arvense Cirsium.palustre
## 0.0750000 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.0500000 0.0750000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.0500000
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.1250000
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.0750000
## Equisteum.variegatum Erigeron.acer
## 0.0250000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.2750000 0.1750000
## Festuca.rubra Festuca.rubra.agg.
## 0.3750000 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.0750000 0.0250000
## Fissidens.dubius Fissidens.exilis
## 0.0500000 0.0250000
## Fragaria.vesca Galium.aparine
## 0.1500000 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.1000000 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 0.0250000
## Holcus.spp. Holcus.lanatus
## 0.7991803 0.3000000
## Holcus.mollis Homalothecium.lutescens
## 0.1500000 0.0500000
## Hylocomium.splendens Hypericum.perforatum
## 0.1750000 0.1500000
## Hypnum.cupressiforme Hypnum.imponens
## 0.2500000 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 0.0250000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.0750000
## Leontodon.hispidus Leontodon.saxatilis
## 0.4278075 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.3500000 0.9448819
## Lolium.perenne Lophocolea.semiteres
## 0.1000000 0.0250000
## Lotus.corniculatus Luzula.multiflora
## 0.4500000 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.0500000 0.1250000
## Myosotis.arvensis Ononis.repens
## 0.1250000 0.2000000
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.3000000
## Plantago.coronopus Plantago.lanceolata
## 0.1000000 0.3250000
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.0750000
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.1000000 0.1250000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.2000000 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.0750000
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.3250000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.0500000 0.0500000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.0500000 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.0500000
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.0500000 0.0250000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.7843137 0.0750000
## Thymus.polytrichus Trichostomum.crispulum
## 0.2216944 0.1500000
## Trifolium.campestre Trifolium.dubium
## 0.1750000 0.0500000
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.1250000
## Trisetum.flavescens Tussilago.farfara
## 0.1000000 0.0750000
## Urtica.diocia Veronica.officinalis
## 0.1000000 0.0250000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 0.0250000 1.0000000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1.000 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 1.000 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 1.000 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 1.000
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.902 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.984 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.247 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 1.000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.947 1.000
## Festuca.rubra Festuca.rubra.agg.
## 0.902 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 1.000 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.066 0.965
## Holcus.mollis Homalothecium.lutescens
## 0.973 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.970 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 1.000 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 0.131 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.936 0.056
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.795 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.880
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.894
## Plantago.coronopus Plantago.lanceolata
## 1.000 0.912
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1.000 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 1.000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.150 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.221 1.000
## Trifolium.campestre Trifolium.dubium
## 1.000 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 1.000
## Trisetum.flavescens Tussilago.farfara
## 1.000 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 0.021
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Zygodon stirtonii has an indval score of 1, the former has and a low p value of 0.029. #This is the indicator species for Linnaeite.
clustMagnesioferrite <-cut(PlantChemistry1$Magnesioferrite, 5, labels=FALSE)
MagnesioferriteIndval <- indval(as.matrix(PlantSpecies1), clustMagnesioferrite, type= "long")
gr <- MagnesioferriteIndval$maxcls[MagnesioferriteIndval$pval<=0.05]
iv <- MagnesioferriteIndval$indcls[MagnesioferriteIndval$pval<=0.05]
pv <- MagnesioferriteIndval$pval[MagnesioferriteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[MagnesioferriteIndval$pval<=0.05]
MagnesioferriteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
MagnesioferriteIndvalsummary <- MagnesioferriteIndvalsummary [order
(MagnesioferriteIndvalsummary$group, -MagnesioferriteIndvalsummary$indval),]
print(MagnesioferriteIndvalsummary)
## group indval pvalue freq
## Avenula.pratensis 2 0.5000 0.048 12
## Sonchus.arvensis 2 0.5000 0.050 2
## Centaurea.nigra 2 0.4875 0.042 2
summary(indval(as.matrix(PlantSpecies1), clustMagnesioferrite))
## cluster indicator_value probability
## Avenula.pratensis 2 0.5000 0.036
## Sonchus.arvensis 2 0.5000 0.042
## Centaurea.nigra 2 0.4875 0.048
##
## Sum of probabilities = 122.412
##
## Sum of Indicator Values = 19.06
##
## Sum of Significant Indicator Values = 1.49
##
## Number of Significant Indicators = 3
##
## Significant Indicator Distribution
##
## 2
## 3
print(indval(as.matrix(PlantSpecies1), clustMagnesioferrite))
## $relfrq
## 1 5
## Agrostis.spp. 0.20512821 0.0
## Agrostis.canina 0.02564103 0.0
## Alchemilla.mollis 0.02564103 0.0
## Alopercus.pratensis 0.00000000 0.5
## Angelica.sylvestris 0.05128205 0.0
## Anthoxanthum.odoratum 0.15384615 0.0
## Anthyllis.vulneraria 0.12820513 0.0
## Aphanes.arvensis 0.07692308 0.0
## Arrhenatherum.elatius 0.20512821 0.0
## Atrichum.undulatum 0.05128205 0.0
## Avenula.pratensis 0.00000000 0.5
## Bellis.perennis 0.28205128 0.5
## Betula.pubescens 0.02564103 0.0
## Blackstonia.perfoliata 0.02564103 0.0
## Brachythecium.albicans 0.02564103 0.0
## Brachythecium.glareosum 0.02564103 0.0
## Brachythecium.mildeanum 0.07692308 0.5
## Brachythecium.rutabulum 0.15384615 0.0
## Briza.media 0.07692308 0.0
## Bromus.hordeaceus 0.02564103 0.0
## Bryum.c.f..caespiticium 0.02564103 0.0
## Bryum.c.f..pallescens 0.07692308 0.0
## Bryum.capillare 0.02564103 0.0
## Bryum.spp. 0.07692308 0.0
## Calliergonella.cupsidata 0.33333333 1.0
## Calypogeia.arguta 0.17948718 0.5
## Campanula.rotundifolia 0.02564103 0.0
## Carex.distans 0.05128205 0.0
## Carex.flacca 0.17948718 0.0
## Carex.panicea 0.02564103 0.0
## Carlina.vulgaris 0.25641026 0.0
## Centaurea.nigra 0.02564103 0.5
## Centaurium.erythraea 0.05128205 0.0
## Centaurium.littorale 0.10256410 0.0
## Centaurium.pulchellum 0.02564103 0.0
## Cerastium.fontanum 0.17948718 0.0
## Chamaenerion.angustifolium 0.02564103 0.0
## Cirriphyllum.piliferum 0.02564103 0.0
## Cirsium.arvense 0.07692308 0.0
## Cirsium.palustre 0.05128205 0.0
## Crepis.capillaris 0.05128205 0.0
## Cynosurus.cristatus 0.07692308 0.0
## Dactylis.glomerata 0.15384615 0.0
## Dactylorhiza.fuchsii 0.05128205 0.0
## Danthonia.decumbens 0.02564103 0.0
## Daucus.carrota 0.05128205 0.0
## Dicranella.spp. 0.02564103 0.0
## Dicranum.scoparium 0.12820513 0.0
## Epilobium.montanum 0.05128205 0.5
## Equisetum.arvense 0.07692308 0.0
## Equisteum.variegatum 0.02564103 0.0
## Erigeron.acer 0.05128205 0.0
## Euphrasia.agg 0.28205128 0.0
## Festuca.ovina 0.15384615 0.5
## Festuca.rubra 0.38461538 0.0
## Festuca.rubra.agg. 0.02564103 0.0
## Filipendula.ulmaria 0.07692308 0.0
## Fissidens.adianthoides 0.02564103 0.0
## Fissidens.dubius 0.05128205 0.0
## Fissidens.exilis 0.02564103 0.0
## Fragaria.vesca 0.15384615 0.0
## Galium.aparine 0.02564103 0.0
## Galium.arvense 0.02564103 0.0
## Galium.saxatile 0.02564103 0.0
## Galium.verum 0.10256410 0.0
## Geum.urbanum 0.02564103 0.0
## Glechoma.hederacea 0.02564103 0.0
## Helicotrichon.spp. 0.02564103 0.0
## Heracleum.sphondylium 0.05128205 0.5
## Hieracium.spp. 0.02564103 0.0
## Holcus.spp. 0.48717949 1.0
## Holcus.lanatus 0.30769231 0.0
## Holcus.mollis 0.15384615 0.0
## Homalothecium.lutescens 0.02564103 0.5
## Hylocomium.splendens 0.17948718 0.0
## Hypericum.perforatum 0.15384615 0.0
## Hypnum.cupressiforme 0.25641026 0.0
## Hypnum.imponens 0.02564103 0.0
## Hypnum.jutlandicum 0.07692308 0.0
## Hypochaeris.radicata 0.02564103 0.0
## Kindbergia.praelonga 0.12820513 0.5
## Lathyrus.pratensis 0.07692308 0.0
## Leontodon.hispidus 0.12820513 0.0
## Leontodon.saxatilis 0.02564103 0.0
## Leucanthemum.vulgare 0.35897436 0.0
## Linum.catharticum 0.12820513 0.0
## Lolium.perenne 0.10256410 0.0
## Lophocolea.semiteres 0.02564103 0.0
## Lotus.corniculatus 0.46153846 0.0
## Luzula.multiflora 0.02564103 0.0
## Lysimachia.maritima 0.05128205 0.0
## Medicago.lupulina 0.12820513 0.0
## Myosotis.arvensis 0.10256410 0.5
## Ononis.repens 0.17948718 0.5
## Oxalis.acetosella 0.02564103 0.0
## Pastinaca.sativa 0.02564103 0.0
## Pentaglottis.sempervirens 0.02564103 0.0
## Pillosella.officinarum 0.30769231 0.0
## Plantago.coronopus 0.10256410 0.0
## Plantago.lanceolata 0.30769231 0.5
## Pleurozium.schreberi 0.10256410 0.0
## Poa.annua 0.07692308 0.0
## Poa.spp. 0.02564103 0.0
## Polytrichum.commune 0.02564103 0.0
## Polytrichum.commune.agg. 0.02564103 0.0
## Polytrichum.formosum 0.02564103 0.0
## Potentilla.reptans 0.10256410 0.0
## Prunella.vulgaris 0.12820513 0.0
## Pseudoscleropidum.purum 0.20512821 0.0
## Pteridium.aquilinum 0.05128205 0.5
## Ranunculus.acris 0.02564103 0.0
## Ranunculus.repens 0.07692308 0.0
## Reseda.lutea 0.02564103 0.0
## Rhinanthus.minor 0.02564103 0.0
## Rhizomnium.punctatum 0.02564103 0.0
## Rhytidadelphus.squarrosus 0.28205128 1.0
## Rhytidadelphus.triquetris 0.05128205 0.0
## Rubus.fruticosus 0.05128205 0.0
## Sanguisorba.minor.spp.minor 0.05128205 0.0
## Saniona.uncinata 0.05128205 0.0
## Sedum.anglicum 0.02564103 0.0
## Senecio.jacobaea 0.05128205 0.0
## Senecio.vulgaris 0.02564103 0.0
## Sonchus.arvensis 0.00000000 0.5
## Stachys.sylvatica 0.05128205 0.0
## Stellaria.apetala 0.02564103 0.0
## Taraxacum.agg. 0.25641026 0.5
## Thuidium.tamariscinum 0.07692308 0.0
## Thymus.polytrichus 0.17948718 0.5
## Trichostomum.crispulum 0.15384615 0.0
## Trifolium.campestre 0.17948718 0.0
## Trifolium.dubium 0.05128205 0.0
## Trifolium.pratense 0.10256410 0.0
## Trifolium.repens 0.10256410 0.5
## Trisetum.flavescens 0.10256410 0.0
## Tussilago.farfara 0.07692308 0.0
## Urtica.diocia 0.10256410 0.0
## Veronica.officinalis 0.02564103 0.0
## Vicia.sativa 0.02564103 0.0
## Viola.riviniana 0.02564103 0.0
## Weissia.controversa 0.02564103 0.0
## Zygodon.stirtonii 0.02564103 0.0
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.0000000
## Agrostis.canina 1.00000000 0.0000000
## Alchemilla.mollis 1.00000000 0.0000000
## Alopercus.pratensis 0.00000000 1.0000000
## Angelica.sylvestris 1.00000000 0.0000000
## Anthoxanthum.odoratum 1.00000000 0.0000000
## Anthyllis.vulneraria 1.00000000 0.0000000
## Aphanes.arvensis 1.00000000 0.0000000
## Arrhenatherum.elatius 1.00000000 0.0000000
## Atrichum.undulatum 1.00000000 0.0000000
## Avenula.pratensis 0.00000000 1.0000000
## Bellis.perennis 0.23529412 0.7647059
## Betula.pubescens 1.00000000 0.0000000
## Blackstonia.perfoliata 1.00000000 0.0000000
## Brachythecium.albicans 1.00000000 0.0000000
## Brachythecium.glareosum 1.00000000 0.0000000
## Brachythecium.mildeanum 0.10344828 0.8965517
## Brachythecium.rutabulum 1.00000000 0.0000000
## Briza.media 1.00000000 0.0000000
## Bromus.hordeaceus 1.00000000 0.0000000
## Bryum.c.f..caespiticium 1.00000000 0.0000000
## Bryum.c.f..pallescens 1.00000000 0.0000000
## Bryum.capillare 1.00000000 0.0000000
## Bryum.spp. 1.00000000 0.0000000
## Calliergonella.cupsidata 0.23298033 0.7670197
## Calypogeia.arguta 0.20000000 0.8000000
## Campanula.rotundifolia 1.00000000 0.0000000
## Carex.distans 1.00000000 0.0000000
## Carex.flacca 1.00000000 0.0000000
## Carex.panicea 1.00000000 0.0000000
## Carlina.vulgaris 1.00000000 0.0000000
## Centaurea.nigra 0.02500000 0.9750000
## Centaurium.erythraea 1.00000000 0.0000000
## Centaurium.littorale 1.00000000 0.0000000
## Centaurium.pulchellum 1.00000000 0.0000000
## Cerastium.fontanum 1.00000000 0.0000000
## Chamaenerion.angustifolium 1.00000000 0.0000000
## Cirriphyllum.piliferum 1.00000000 0.0000000
## Cirsium.arvense 1.00000000 0.0000000
## Cirsium.palustre 1.00000000 0.0000000
## Crepis.capillaris 1.00000000 0.0000000
## Cynosurus.cristatus 1.00000000 0.0000000
## Dactylis.glomerata 1.00000000 0.0000000
## Dactylorhiza.fuchsii 1.00000000 0.0000000
## Danthonia.decumbens 1.00000000 0.0000000
## Daucus.carrota 1.00000000 0.0000000
## Dicranella.spp. 1.00000000 0.0000000
## Dicranum.scoparium 1.00000000 0.0000000
## Epilobium.montanum 0.36065574 0.6393443
## Equisetum.arvense 1.00000000 0.0000000
## Equisteum.variegatum 1.00000000 0.0000000
## Erigeron.acer 1.00000000 0.0000000
## Euphrasia.agg 1.00000000 0.0000000
## Festuca.ovina 0.66321244 0.3367876
## Festuca.rubra 1.00000000 0.0000000
## Festuca.rubra.agg. 1.00000000 0.0000000
## Filipendula.ulmaria 1.00000000 0.0000000
## Fissidens.adianthoides 1.00000000 0.0000000
## Fissidens.dubius 1.00000000 0.0000000
## Fissidens.exilis 1.00000000 0.0000000
## Fragaria.vesca 1.00000000 0.0000000
## Galium.aparine 1.00000000 0.0000000
## Galium.arvense 1.00000000 0.0000000
## Galium.saxatile 1.00000000 0.0000000
## Galium.verum 1.00000000 0.0000000
## Geum.urbanum 1.00000000 0.0000000
## Glechoma.hederacea 1.00000000 0.0000000
## Helicotrichon.spp. 1.00000000 0.0000000
## Heracleum.sphondylium 0.01265823 0.9873418
## Hieracium.spp. 1.00000000 0.0000000
## Holcus.spp. 0.53346266 0.4665373
## Holcus.lanatus 1.00000000 0.0000000
## Holcus.mollis 1.00000000 0.0000000
## Homalothecium.lutescens 0.45070423 0.5492958
## Hylocomium.splendens 1.00000000 0.0000000
## Hypericum.perforatum 1.00000000 0.0000000
## Hypnum.cupressiforme 1.00000000 0.0000000
## Hypnum.imponens 1.00000000 0.0000000
## Hypnum.jutlandicum 1.00000000 0.0000000
## Hypochaeris.radicata 1.00000000 0.0000000
## Kindbergia.praelonga 0.11363636 0.8863636
## Lathyrus.pratensis 1.00000000 0.0000000
## Leontodon.hispidus 1.00000000 0.0000000
## Leontodon.saxatilis 1.00000000 0.0000000
## Leucanthemum.vulgare 1.00000000 0.0000000
## Linum.catharticum 1.00000000 0.0000000
## Lolium.perenne 1.00000000 0.0000000
## Lophocolea.semiteres 1.00000000 0.0000000
## Lotus.corniculatus 1.00000000 0.0000000
## Luzula.multiflora 1.00000000 0.0000000
## Lysimachia.maritima 1.00000000 0.0000000
## Medicago.lupulina 1.00000000 0.0000000
## Myosotis.arvensis 0.13333333 0.8666667
## Ononis.repens 0.18344965 0.8165503
## Oxalis.acetosella 1.00000000 0.0000000
## Pastinaca.sativa 1.00000000 0.0000000
## Pentaglottis.sempervirens 1.00000000 0.0000000
## Pillosella.officinarum 1.00000000 0.0000000
## Plantago.coronopus 1.00000000 0.0000000
## Plantago.lanceolata 0.88073394 0.1192661
## Pleurozium.schreberi 1.00000000 0.0000000
## Poa.annua 1.00000000 0.0000000
## Poa.spp. 1.00000000 0.0000000
## Polytrichum.commune 1.00000000 0.0000000
## Polytrichum.commune.agg. 1.00000000 0.0000000
## Polytrichum.formosum 1.00000000 0.0000000
## Potentilla.reptans 1.00000000 0.0000000
## Prunella.vulgaris 1.00000000 0.0000000
## Pseudoscleropidum.purum 1.00000000 0.0000000
## Pteridium.aquilinum 0.13333333 0.8666667
## Ranunculus.acris 1.00000000 0.0000000
## Ranunculus.repens 1.00000000 0.0000000
## Reseda.lutea 1.00000000 0.0000000
## Rhinanthus.minor 1.00000000 0.0000000
## Rhizomnium.punctatum 1.00000000 0.0000000
## Rhytidadelphus.squarrosus 0.23529412 0.7647059
## Rhytidadelphus.triquetris 1.00000000 0.0000000
## Rubus.fruticosus 1.00000000 0.0000000
## Sanguisorba.minor.spp.minor 1.00000000 0.0000000
## Saniona.uncinata 1.00000000 0.0000000
## Sedum.anglicum 1.00000000 0.0000000
## Senecio.jacobaea 1.00000000 0.0000000
## Senecio.vulgaris 1.00000000 0.0000000
## Sonchus.arvensis 0.00000000 1.0000000
## Stachys.sylvatica 1.00000000 0.0000000
## Stellaria.apetala 1.00000000 0.0000000
## Taraxacum.agg. 0.54117647 0.4588235
## Thuidium.tamariscinum 1.00000000 0.0000000
## Thymus.polytrichus 0.71323529 0.2867647
## Trichostomum.crispulum 1.00000000 0.0000000
## Trifolium.campestre 1.00000000 0.0000000
## Trifolium.dubium 1.00000000 0.0000000
## Trifolium.pratense 1.00000000 0.0000000
## Trifolium.repens 0.59793814 0.4020619
## Trisetum.flavescens 1.00000000 0.0000000
## Tussilago.farfara 1.00000000 0.0000000
## Urtica.diocia 1.00000000 0.0000000
## Veronica.officinalis 1.00000000 0.0000000
## Vicia.sativa 1.00000000 0.0000000
## Viola.riviniana 1.00000000 0.0000000
## Weissia.controversa 1.00000000 0.0000000
## Zygodon.stirtonii 1.00000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.2051282051 0.00000000
## Agrostis.canina 0.0256410256 0.00000000
## Alchemilla.mollis 0.0256410256 0.00000000
## Alopercus.pratensis 0.0000000000 0.50000000
## Angelica.sylvestris 0.0512820513 0.00000000
## Anthoxanthum.odoratum 0.1538461538 0.00000000
## Anthyllis.vulneraria 0.1282051282 0.00000000
## Aphanes.arvensis 0.0769230769 0.00000000
## Arrhenatherum.elatius 0.2051282051 0.00000000
## Atrichum.undulatum 0.0512820513 0.00000000
## Avenula.pratensis 0.0000000000 0.50000000
## Bellis.perennis 0.0663650075 0.38235294
## Betula.pubescens 0.0256410256 0.00000000
## Blackstonia.perfoliata 0.0256410256 0.00000000
## Brachythecium.albicans 0.0256410256 0.00000000
## Brachythecium.glareosum 0.0256410256 0.00000000
## Brachythecium.mildeanum 0.0079575597 0.44827586
## Brachythecium.rutabulum 0.1538461538 0.00000000
## Briza.media 0.0769230769 0.00000000
## Bromus.hordeaceus 0.0256410256 0.00000000
## Bryum.c.f..caespiticium 0.0256410256 0.00000000
## Bryum.c.f..pallescens 0.0769230769 0.00000000
## Bryum.capillare 0.0256410256 0.00000000
## Bryum.spp. 0.0769230769 0.00000000
## Calliergonella.cupsidata 0.0776601109 0.76701967
## Calypogeia.arguta 0.0358974359 0.40000000
## Campanula.rotundifolia 0.0256410256 0.00000000
## Carex.distans 0.0512820513 0.00000000
## Carex.flacca 0.1794871795 0.00000000
## Carex.panicea 0.0256410256 0.00000000
## Carlina.vulgaris 0.2564102564 0.00000000
## Centaurea.nigra 0.0006410256 0.48750000
## Centaurium.erythraea 0.0512820513 0.00000000
## Centaurium.littorale 0.1025641026 0.00000000
## Centaurium.pulchellum 0.0256410256 0.00000000
## Cerastium.fontanum 0.1794871795 0.00000000
## Chamaenerion.angustifolium 0.0256410256 0.00000000
## Cirriphyllum.piliferum 0.0256410256 0.00000000
## Cirsium.arvense 0.0769230769 0.00000000
## Cirsium.palustre 0.0512820513 0.00000000
## Crepis.capillaris 0.0512820513 0.00000000
## Cynosurus.cristatus 0.0769230769 0.00000000
## Dactylis.glomerata 0.1538461538 0.00000000
## Dactylorhiza.fuchsii 0.0512820513 0.00000000
## Danthonia.decumbens 0.0256410256 0.00000000
## Daucus.carrota 0.0512820513 0.00000000
## Dicranella.spp. 0.0256410256 0.00000000
## Dicranum.scoparium 0.1282051282 0.00000000
## Epilobium.montanum 0.0184951660 0.31967213
## Equisetum.arvense 0.0769230769 0.00000000
## Equisteum.variegatum 0.0256410256 0.00000000
## Erigeron.acer 0.0512820513 0.00000000
## Euphrasia.agg 0.2820512821 0.00000000
## Festuca.ovina 0.1020326823 0.16839378
## Festuca.rubra 0.3846153846 0.00000000
## Festuca.rubra.agg. 0.0256410256 0.00000000
## Filipendula.ulmaria 0.0769230769 0.00000000
## Fissidens.adianthoides 0.0256410256 0.00000000
## Fissidens.dubius 0.0512820513 0.00000000
## Fissidens.exilis 0.0256410256 0.00000000
## Fragaria.vesca 0.1538461538 0.00000000
## Galium.aparine 0.0256410256 0.00000000
## Galium.arvense 0.0256410256 0.00000000
## Galium.saxatile 0.0256410256 0.00000000
## Galium.verum 0.1025641026 0.00000000
## Geum.urbanum 0.0256410256 0.00000000
## Glechoma.hederacea 0.0256410256 0.00000000
## Helicotrichon.spp. 0.0256410256 0.00000000
## Heracleum.sphondylium 0.0006491399 0.49367089
## Hieracium.spp. 0.0256410256 0.00000000
## Holcus.spp. 0.2598920640 0.46653734
## Holcus.lanatus 0.3076923077 0.00000000
## Holcus.mollis 0.1538461538 0.00000000
## Homalothecium.lutescens 0.0115565186 0.27464789
## Hylocomium.splendens 0.1794871795 0.00000000
## Hypericum.perforatum 0.1538461538 0.00000000
## Hypnum.cupressiforme 0.2564102564 0.00000000
## Hypnum.imponens 0.0256410256 0.00000000
## Hypnum.jutlandicum 0.0769230769 0.00000000
## Hypochaeris.radicata 0.0256410256 0.00000000
## Kindbergia.praelonga 0.0145687646 0.44318182
## Lathyrus.pratensis 0.0769230769 0.00000000
## Leontodon.hispidus 0.1282051282 0.00000000
## Leontodon.saxatilis 0.0256410256 0.00000000
## Leucanthemum.vulgare 0.3589743590 0.00000000
## Linum.catharticum 0.1282051282 0.00000000
## Lolium.perenne 0.1025641026 0.00000000
## Lophocolea.semiteres 0.0256410256 0.00000000
## Lotus.corniculatus 0.4615384615 0.00000000
## Luzula.multiflora 0.0256410256 0.00000000
## Lysimachia.maritima 0.0512820513 0.00000000
## Medicago.lupulina 0.1282051282 0.00000000
## Myosotis.arvensis 0.0136752137 0.43333333
## Ononis.repens 0.0329268604 0.40827517
## Oxalis.acetosella 0.0256410256 0.00000000
## Pastinaca.sativa 0.0256410256 0.00000000
## Pentaglottis.sempervirens 0.0256410256 0.00000000
## Pillosella.officinarum 0.3076923077 0.00000000
## Plantago.coronopus 0.1025641026 0.00000000
## Plantago.lanceolata 0.2709950600 0.05963303
## Pleurozium.schreberi 0.1025641026 0.00000000
## Poa.annua 0.0769230769 0.00000000
## Poa.spp. 0.0256410256 0.00000000
## Polytrichum.commune 0.0256410256 0.00000000
## Polytrichum.commune.agg. 0.0256410256 0.00000000
## Polytrichum.formosum 0.0256410256 0.00000000
## Potentilla.reptans 0.1025641026 0.00000000
## Prunella.vulgaris 0.1282051282 0.00000000
## Pseudoscleropidum.purum 0.2051282051 0.00000000
## Pteridium.aquilinum 0.0068376068 0.43333333
## Ranunculus.acris 0.0256410256 0.00000000
## Ranunculus.repens 0.0769230769 0.00000000
## Reseda.lutea 0.0256410256 0.00000000
## Rhinanthus.minor 0.0256410256 0.00000000
## Rhizomnium.punctatum 0.0256410256 0.00000000
## Rhytidadelphus.squarrosus 0.0663650075 0.76470588
## Rhytidadelphus.triquetris 0.0512820513 0.00000000
## Rubus.fruticosus 0.0512820513 0.00000000
## Sanguisorba.minor.spp.minor 0.0512820513 0.00000000
## Saniona.uncinata 0.0512820513 0.00000000
## Sedum.anglicum 0.0256410256 0.00000000
## Senecio.jacobaea 0.0512820513 0.00000000
## Senecio.vulgaris 0.0256410256 0.00000000
## Sonchus.arvensis 0.0000000000 0.50000000
## Stachys.sylvatica 0.0512820513 0.00000000
## Stellaria.apetala 0.0256410256 0.00000000
## Taraxacum.agg. 0.1387631976 0.22941176
## Thuidium.tamariscinum 0.0769230769 0.00000000
## Thymus.polytrichus 0.1280165913 0.14338235
## Trichostomum.crispulum 0.1538461538 0.00000000
## Trifolium.campestre 0.1794871795 0.00000000
## Trifolium.dubium 0.0512820513 0.00000000
## Trifolium.pratense 0.1025641026 0.00000000
## Trifolium.repens 0.0613269892 0.20103093
## Trisetum.flavescens 0.1025641026 0.00000000
## Tussilago.farfara 0.0769230769 0.00000000
## Urtica.diocia 0.1025641026 0.00000000
## Veronica.officinalis 0.0256410256 0.00000000
## Vicia.sativa 0.0256410256 0.00000000
## Viola.riviniana 0.0256410256 0.00000000
## Weissia.controversa 0.0256410256 0.00000000
## Zygodon.stirtonii 0.0256410256 0.00000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 2
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 2 2
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 2 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 2 2
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 1 2
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 2 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 2
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 2 1
## Holcus.spp. Holcus.lanatus
## 2 1
## Holcus.mollis Homalothecium.lutescens
## 1 2
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 2 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 2 2
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 2
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 2
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 2
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 2 1
## Thymus.polytrichus Trichostomum.crispulum
## 2 1
## Trifolium.campestre Trifolium.dubium
## 1 1
## Trifolium.pratense Trifolium.repens
## 1 2
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.20512821 0.02564103
## Alchemilla.mollis Alopercus.pratensis
## 0.02564103 0.50000000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.05128205 0.15384615
## Anthyllis.vulneraria Aphanes.arvensis
## 0.12820513 0.07692308
## Arrhenatherum.elatius Atrichum.undulatum
## 0.20512821 0.05128205
## Avenula.pratensis Bellis.perennis
## 0.50000000 0.38235294
## Betula.pubescens Blackstonia.perfoliata
## 0.02564103 0.02564103
## Brachythecium.albicans Brachythecium.glareosum
## 0.02564103 0.02564103
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.44827586 0.15384615
## Briza.media Bromus.hordeaceus
## 0.07692308 0.02564103
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.02564103 0.07692308
## Bryum.capillare Bryum.spp.
## 0.02564103 0.07692308
## Calliergonella.cupsidata Calypogeia.arguta
## 0.76701967 0.40000000
## Campanula.rotundifolia Carex.distans
## 0.02564103 0.05128205
## Carex.flacca Carex.panicea
## 0.17948718 0.02564103
## Carlina.vulgaris Centaurea.nigra
## 0.25641026 0.48750000
## Centaurium.erythraea Centaurium.littorale
## 0.05128205 0.10256410
## Centaurium.pulchellum Cerastium.fontanum
## 0.02564103 0.17948718
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.02564103 0.02564103
## Cirsium.arvense Cirsium.palustre
## 0.07692308 0.05128205
## Crepis.capillaris Cynosurus.cristatus
## 0.05128205 0.07692308
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.15384615 0.05128205
## Danthonia.decumbens Daucus.carrota
## 0.02564103 0.05128205
## Dicranella.spp. Dicranum.scoparium
## 0.02564103 0.12820513
## Epilobium.montanum Equisetum.arvense
## 0.31967213 0.07692308
## Equisteum.variegatum Erigeron.acer
## 0.02564103 0.05128205
## Euphrasia.agg Festuca.ovina
## 0.28205128 0.16839378
## Festuca.rubra Festuca.rubra.agg.
## 0.38461538 0.02564103
## Filipendula.ulmaria Fissidens.adianthoides
## 0.07692308 0.02564103
## Fissidens.dubius Fissidens.exilis
## 0.05128205 0.02564103
## Fragaria.vesca Galium.aparine
## 0.15384615 0.02564103
## Galium.arvense Galium.saxatile
## 0.02564103 0.02564103
## Galium.verum Geum.urbanum
## 0.10256410 0.02564103
## Glechoma.hederacea Helicotrichon.spp.
## 0.02564103 0.02564103
## Heracleum.sphondylium Hieracium.spp.
## 0.49367089 0.02564103
## Holcus.spp. Holcus.lanatus
## 0.46653734 0.30769231
## Holcus.mollis Homalothecium.lutescens
## 0.15384615 0.27464789
## Hylocomium.splendens Hypericum.perforatum
## 0.17948718 0.15384615
## Hypnum.cupressiforme Hypnum.imponens
## 0.25641026 0.02564103
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.07692308 0.02564103
## Kindbergia.praelonga Lathyrus.pratensis
## 0.44318182 0.07692308
## Leontodon.hispidus Leontodon.saxatilis
## 0.12820513 0.02564103
## Leucanthemum.vulgare Linum.catharticum
## 0.35897436 0.12820513
## Lolium.perenne Lophocolea.semiteres
## 0.10256410 0.02564103
## Lotus.corniculatus Luzula.multiflora
## 0.46153846 0.02564103
## Lysimachia.maritima Medicago.lupulina
## 0.05128205 0.12820513
## Myosotis.arvensis Ononis.repens
## 0.43333333 0.40827517
## Oxalis.acetosella Pastinaca.sativa
## 0.02564103 0.02564103
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.02564103 0.30769231
## Plantago.coronopus Plantago.lanceolata
## 0.10256410 0.27099506
## Pleurozium.schreberi Poa.annua
## 0.10256410 0.07692308
## Poa.spp. Polytrichum.commune
## 0.02564103 0.02564103
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.02564103 0.02564103
## Potentilla.reptans Prunella.vulgaris
## 0.10256410 0.12820513
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.20512821 0.43333333
## Ranunculus.acris Ranunculus.repens
## 0.02564103 0.07692308
## Reseda.lutea Rhinanthus.minor
## 0.02564103 0.02564103
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.02564103 0.76470588
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.05128205 0.05128205
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.05128205 0.05128205
## Sedum.anglicum Senecio.jacobaea
## 0.02564103 0.05128205
## Senecio.vulgaris Sonchus.arvensis
## 0.02564103 0.50000000
## Stachys.sylvatica Stellaria.apetala
## 0.05128205 0.02564103
## Taraxacum.agg. Thuidium.tamariscinum
## 0.22941176 0.07692308
## Thymus.polytrichus Trichostomum.crispulum
## 0.14338235 0.15384615
## Trifolium.campestre Trifolium.dubium
## 0.17948718 0.05128205
## Trifolium.pratense Trifolium.repens
## 0.10256410 0.20103093
## Trisetum.flavescens Tussilago.farfara
## 0.10256410 0.07692308
## Urtica.diocia Veronica.officinalis
## 0.10256410 0.02564103
## Vicia.sativa Viola.riviniana
## 0.02564103 0.02564103
## Weissia.controversa Zygodon.stirtonii
## 0.02564103 0.02564103
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.885 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 0.052
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.947 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.878 1.000
## Avenula.pratensis Bellis.perennis
## 0.051 0.190
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.096 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.065 0.143
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.895 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.884 0.054
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 1.000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.921 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 0.133 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.737 0.962
## Festuca.rubra Festuca.rubra.agg.
## 0.532 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 0.919 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 0.047 1.000
## Holcus.spp. Holcus.lanatus
## 0.502 0.750
## Holcus.mollis Homalothecium.lutescens
## 0.917 0.094
## Hylocomium.splendens Hypericum.perforatum
## 0.951 0.961
## Hypnum.cupressiforme Hypnum.imponens
## 0.856 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.063 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.662 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.462 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 0.103 0.135
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.683
## Plantago.coronopus Plantago.lanceolata
## 0.964 0.837
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.916 0.138
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.050
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 0.048
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 1.000 1.000
## Trifolium.campestre Trifolium.dubium
## 0.921 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 0.239
## Trisetum.flavescens Tussilago.farfara
## 0.921 1.000
## Urtica.diocia Veronica.officinalis
## 0.960 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Rhytidiadelphus squarrosus has an indicator score of 0.765 and a p value of 0.041. This is #the indicator species for Magnesioferrite.
clustMelilite <-cut(PlantChemistry1$Melilite, 5, labels=FALSE)
MeliliteIndval <- indval(as.matrix(PlantSpecies1), clustMelilite, type= "long")
gr <- MeliliteIndval$maxcls[MeliliteIndval$pval<=0.05]
iv <- MeliliteIndval$indcls[MeliliteIndval$pval<=0.05]
pv <- MeliliteIndval$pval[MeliliteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[MeliliteIndval$pval<=0.05]
MeliliteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
MeliliteIndvalsummary <- MeliliteIndvalsummary [order
(MeliliteIndvalsummary$group, -MeliliteIndvalsummary$indval),]
print(MeliliteIndvalsummary)
## group indval pvalue freq
## Taraxacum.agg. 2 0.9069767 0.011 3
## Pillosella.officinarum 2 0.5768283 0.049 4
## Senecio.vulgaris 2 0.5000000 0.049 1
## Festuca.ovina 2 0.4538082 0.046 15
summary(indval(as.matrix(PlantSpecies1), clustMelilite))
## cluster indicator_value probability
## Taraxacum.agg. 2 0.9070 0.003
## Pillosella.officinarum 2 0.5768 0.046
## Senecio.vulgaris 2 0.5000 0.042
##
## Sum of probabilities = 126.012
##
## Sum of Indicator Values = 17.4
##
## Sum of Significant Indicator Values = 1.98
##
## Number of Significant Indicators = 3
##
## Significant Indicator Distribution
##
## 2
## 3
print(indval(as.matrix(PlantSpecies1), clustMelilite))
## $relfrq
## 1 5
## Agrostis.spp. 0.20512821 0.0
## Agrostis.canina 0.02564103 0.0
## Alchemilla.mollis 0.02564103 0.0
## Alopercus.pratensis 0.02564103 0.0
## Angelica.sylvestris 0.05128205 0.0
## Anthoxanthum.odoratum 0.15384615 0.0
## Anthyllis.vulneraria 0.10256410 0.5
## Aphanes.arvensis 0.07692308 0.0
## Arrhenatherum.elatius 0.20512821 0.0
## Atrichum.undulatum 0.05128205 0.0
## Avenula.pratensis 0.02564103 0.0
## Bellis.perennis 0.25641026 1.0
## Betula.pubescens 0.02564103 0.0
## Blackstonia.perfoliata 0.02564103 0.0
## Brachythecium.albicans 0.02564103 0.0
## Brachythecium.glareosum 0.02564103 0.0
## Brachythecium.mildeanum 0.10256410 0.0
## Brachythecium.rutabulum 0.15384615 0.0
## Briza.media 0.07692308 0.0
## Bromus.hordeaceus 0.02564103 0.0
## Bryum.c.f..caespiticium 0.02564103 0.0
## Bryum.c.f..pallescens 0.07692308 0.0
## Bryum.capillare 0.02564103 0.0
## Bryum.spp. 0.07692308 0.0
## Calliergonella.cupsidata 0.38461538 0.0
## Calypogeia.arguta 0.20512821 0.0
## Campanula.rotundifolia 0.02564103 0.0
## Carex.distans 0.05128205 0.0
## Carex.flacca 0.17948718 0.0
## Carex.panicea 0.02564103 0.0
## Carlina.vulgaris 0.23076923 0.5
## Centaurea.nigra 0.05128205 0.0
## Centaurium.erythraea 0.05128205 0.0
## Centaurium.littorale 0.10256410 0.0
## Centaurium.pulchellum 0.02564103 0.0
## Cerastium.fontanum 0.17948718 0.0
## Chamaenerion.angustifolium 0.02564103 0.0
## Cirriphyllum.piliferum 0.02564103 0.0
## Cirsium.arvense 0.07692308 0.0
## Cirsium.palustre 0.05128205 0.0
## Crepis.capillaris 0.05128205 0.0
## Cynosurus.cristatus 0.07692308 0.0
## Dactylis.glomerata 0.15384615 0.0
## Dactylorhiza.fuchsii 0.05128205 0.0
## Danthonia.decumbens 0.02564103 0.0
## Daucus.carrota 0.05128205 0.0
## Dicranella.spp. 0.02564103 0.0
## Dicranum.scoparium 0.12820513 0.0
## Epilobium.montanum 0.07692308 0.0
## Equisetum.arvense 0.07692308 0.0
## Equisteum.variegatum 0.02564103 0.0
## Erigeron.acer 0.02564103 0.5
## Euphrasia.agg 0.25641026 0.5
## Festuca.ovina 0.15384615 0.5
## Festuca.rubra 0.35897436 0.5
## Festuca.rubra.agg. 0.02564103 0.0
## Filipendula.ulmaria 0.07692308 0.0
## Fissidens.adianthoides 0.02564103 0.0
## Fissidens.dubius 0.05128205 0.0
## Fissidens.exilis 0.02564103 0.0
## Fragaria.vesca 0.15384615 0.0
## Galium.aparine 0.02564103 0.0
## Galium.arvense 0.02564103 0.0
## Galium.saxatile 0.02564103 0.0
## Galium.verum 0.10256410 0.0
## Geum.urbanum 0.02564103 0.0
## Glechoma.hederacea 0.02564103 0.0
## Helicotrichon.spp. 0.02564103 0.0
## Heracleum.sphondylium 0.07692308 0.0
## Hieracium.spp. 0.02564103 0.0
## Holcus.spp. 0.51282051 0.5
## Holcus.lanatus 0.30769231 0.0
## Holcus.mollis 0.15384615 0.0
## Homalothecium.lutescens 0.05128205 0.0
## Hylocomium.splendens 0.17948718 0.0
## Hypericum.perforatum 0.12820513 0.5
## Hypnum.cupressiforme 0.25641026 0.0
## Hypnum.imponens 0.02564103 0.0
## Hypnum.jutlandicum 0.07692308 0.0
## Hypochaeris.radicata 0.02564103 0.0
## Kindbergia.praelonga 0.15384615 0.0
## Lathyrus.pratensis 0.07692308 0.0
## Leontodon.hispidus 0.10256410 0.5
## Leontodon.saxatilis 0.00000000 0.5
## Leucanthemum.vulgare 0.33333333 0.5
## Linum.catharticum 0.12820513 0.0
## Lolium.perenne 0.10256410 0.0
## Lophocolea.semiteres 0.02564103 0.0
## Lotus.corniculatus 0.43589744 0.5
## Luzula.multiflora 0.02564103 0.0
## Lysimachia.maritima 0.05128205 0.0
## Medicago.lupulina 0.10256410 0.5
## Myosotis.arvensis 0.12820513 0.0
## Ononis.repens 0.20512821 0.0
## Oxalis.acetosella 0.02564103 0.0
## Pastinaca.sativa 0.02564103 0.0
## Pentaglottis.sempervirens 0.02564103 0.0
## Pillosella.officinarum 0.25641026 1.0
## Plantago.coronopus 0.10256410 0.0
## Plantago.lanceolata 0.30769231 0.5
## Pleurozium.schreberi 0.10256410 0.0
## Poa.annua 0.07692308 0.0
## Poa.spp. 0.02564103 0.0
## Polytrichum.commune 0.02564103 0.0
## Polytrichum.commune.agg. 0.02564103 0.0
## Polytrichum.formosum 0.02564103 0.0
## Potentilla.reptans 0.07692308 0.5
## Prunella.vulgaris 0.12820513 0.0
## Pseudoscleropidum.purum 0.20512821 0.0
## Pteridium.aquilinum 0.07692308 0.0
## Ranunculus.acris 0.02564103 0.0
## Ranunculus.repens 0.07692308 0.0
## Reseda.lutea 0.02564103 0.0
## Rhinanthus.minor 0.02564103 0.0
## Rhizomnium.punctatum 0.02564103 0.0
## Rhytidadelphus.squarrosus 0.33333333 0.0
## Rhytidadelphus.triquetris 0.05128205 0.0
## Rubus.fruticosus 0.05128205 0.0
## Sanguisorba.minor.spp.minor 0.05128205 0.0
## Saniona.uncinata 0.05128205 0.0
## Sedum.anglicum 0.02564103 0.0
## Senecio.jacobaea 0.05128205 0.0
## Senecio.vulgaris 0.00000000 0.5
## Sonchus.arvensis 0.02564103 0.0
## Stachys.sylvatica 0.05128205 0.0
## Stellaria.apetala 0.02564103 0.0
## Taraxacum.agg. 0.23076923 1.0
## Thuidium.tamariscinum 0.07692308 0.0
## Thymus.polytrichus 0.20512821 0.0
## Trichostomum.crispulum 0.15384615 0.0
## Trifolium.campestre 0.15384615 0.5
## Trifolium.dubium 0.05128205 0.0
## Trifolium.pratense 0.10256410 0.0
## Trifolium.repens 0.12820513 0.0
## Trisetum.flavescens 0.10256410 0.0
## Tussilago.farfara 0.07692308 0.0
## Urtica.diocia 0.10256410 0.0
## Veronica.officinalis 0.02564103 0.0
## Vicia.sativa 0.02564103 0.0
## Viola.riviniana 0.02564103 0.0
## Weissia.controversa 0.02564103 0.0
## Zygodon.stirtonii 0.02564103 0.0
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.00000000
## Agrostis.canina 1.00000000 0.00000000
## Alchemilla.mollis 1.00000000 0.00000000
## Alopercus.pratensis 1.00000000 0.00000000
## Angelica.sylvestris 1.00000000 0.00000000
## Anthoxanthum.odoratum 1.00000000 0.00000000
## Anthyllis.vulneraria 0.84274194 0.15725806
## Aphanes.arvensis 1.00000000 0.00000000
## Arrhenatherum.elatius 1.00000000 0.00000000
## Atrichum.undulatum 1.00000000 0.00000000
## Avenula.pratensis 1.00000000 0.00000000
## Bellis.perennis 0.28440367 0.71559633
## Betula.pubescens 1.00000000 0.00000000
## Blackstonia.perfoliata 1.00000000 0.00000000
## Brachythecium.albicans 1.00000000 0.00000000
## Brachythecium.glareosum 1.00000000 0.00000000
## Brachythecium.mildeanum 1.00000000 0.00000000
## Brachythecium.rutabulum 1.00000000 0.00000000
## Briza.media 1.00000000 0.00000000
## Bromus.hordeaceus 1.00000000 0.00000000
## Bryum.c.f..caespiticium 1.00000000 0.00000000
## Bryum.c.f..pallescens 1.00000000 0.00000000
## Bryum.capillare 1.00000000 0.00000000
## Bryum.spp. 1.00000000 0.00000000
## Calliergonella.cupsidata 1.00000000 0.00000000
## Calypogeia.arguta 1.00000000 0.00000000
## Campanula.rotundifolia 1.00000000 0.00000000
## Carex.distans 1.00000000 0.00000000
## Carex.flacca 1.00000000 0.00000000
## Carex.panicea 1.00000000 0.00000000
## Carlina.vulgaris 0.28044280 0.71955720
## Centaurea.nigra 1.00000000 0.00000000
## Centaurium.erythraea 1.00000000 0.00000000
## Centaurium.littorale 1.00000000 0.00000000
## Centaurium.pulchellum 1.00000000 0.00000000
## Cerastium.fontanum 1.00000000 0.00000000
## Chamaenerion.angustifolium 1.00000000 0.00000000
## Cirriphyllum.piliferum 1.00000000 0.00000000
## Cirsium.arvense 1.00000000 0.00000000
## Cirsium.palustre 1.00000000 0.00000000
## Crepis.capillaris 1.00000000 0.00000000
## Cynosurus.cristatus 1.00000000 0.00000000
## Dactylis.glomerata 1.00000000 0.00000000
## Dactylorhiza.fuchsii 1.00000000 0.00000000
## Danthonia.decumbens 1.00000000 0.00000000
## Daucus.carrota 1.00000000 0.00000000
## Dicranella.spp. 1.00000000 0.00000000
## Dicranum.scoparium 1.00000000 0.00000000
## Epilobium.montanum 1.00000000 0.00000000
## Equisetum.arvense 1.00000000 0.00000000
## Equisteum.variegatum 1.00000000 0.00000000
## Erigeron.acer 0.17605634 0.82394366
## Euphrasia.agg 0.60000000 0.40000000
## Festuca.ovina 0.09238364 0.90761636
## Festuca.rubra 0.27899160 0.72100840
## Festuca.rubra.agg. 1.00000000 0.00000000
## Filipendula.ulmaria 1.00000000 0.00000000
## Fissidens.adianthoides 1.00000000 0.00000000
## Fissidens.dubius 1.00000000 0.00000000
## Fissidens.exilis 1.00000000 0.00000000
## Fragaria.vesca 1.00000000 0.00000000
## Galium.aparine 1.00000000 0.00000000
## Galium.arvense 1.00000000 0.00000000
## Galium.saxatile 1.00000000 0.00000000
## Galium.verum 1.00000000 0.00000000
## Geum.urbanum 1.00000000 0.00000000
## Glechoma.hederacea 1.00000000 0.00000000
## Helicotrichon.spp. 1.00000000 0.00000000
## Heracleum.sphondylium 1.00000000 0.00000000
## Hieracium.spp. 1.00000000 0.00000000
## Holcus.spp. 0.91666667 0.08333333
## Holcus.lanatus 1.00000000 0.00000000
## Holcus.mollis 1.00000000 0.00000000
## Homalothecium.lutescens 1.00000000 0.00000000
## Hylocomium.splendens 1.00000000 0.00000000
## Hypericum.perforatum 0.08917197 0.91082803
## Hypnum.cupressiforme 1.00000000 0.00000000
## Hypnum.imponens 1.00000000 0.00000000
## Hypnum.jutlandicum 1.00000000 0.00000000
## Hypochaeris.radicata 1.00000000 0.00000000
## Kindbergia.praelonga 1.00000000 0.00000000
## Lathyrus.pratensis 1.00000000 0.00000000
## Leontodon.hispidus 0.20588235 0.79411765
## Leontodon.saxatilis 0.00000000 1.00000000
## Leucanthemum.vulgare 0.13653137 0.86346863
## Linum.catharticum 1.00000000 0.00000000
## Lolium.perenne 1.00000000 0.00000000
## Lophocolea.semiteres 1.00000000 0.00000000
## Lotus.corniculatus 0.74952777 0.25047223
## Luzula.multiflora 1.00000000 0.00000000
## Lysimachia.maritima 1.00000000 0.00000000
## Medicago.lupulina 0.63551402 0.36448598
## Myosotis.arvensis 1.00000000 0.00000000
## Ononis.repens 1.00000000 0.00000000
## Oxalis.acetosella 1.00000000 0.00000000
## Pastinaca.sativa 1.00000000 0.00000000
## Pentaglottis.sempervirens 1.00000000 0.00000000
## Pillosella.officinarum 0.42317173 0.57682827
## Plantago.coronopus 1.00000000 0.00000000
## Plantago.lanceolata 0.70822943 0.29177057
## Pleurozium.schreberi 1.00000000 0.00000000
## Poa.annua 1.00000000 0.00000000
## Poa.spp. 1.00000000 0.00000000
## Polytrichum.commune 1.00000000 0.00000000
## Polytrichum.commune.agg. 1.00000000 0.00000000
## Polytrichum.formosum 1.00000000 0.00000000
## Potentilla.reptans 0.51851852 0.48148148
## Prunella.vulgaris 1.00000000 0.00000000
## Pseudoscleropidum.purum 1.00000000 0.00000000
## Pteridium.aquilinum 1.00000000 0.00000000
## Ranunculus.acris 1.00000000 0.00000000
## Ranunculus.repens 1.00000000 0.00000000
## Reseda.lutea 1.00000000 0.00000000
## Rhinanthus.minor 1.00000000 0.00000000
## Rhizomnium.punctatum 1.00000000 0.00000000
## Rhytidadelphus.squarrosus 1.00000000 0.00000000
## Rhytidadelphus.triquetris 1.00000000 0.00000000
## Rubus.fruticosus 1.00000000 0.00000000
## Sanguisorba.minor.spp.minor 1.00000000 0.00000000
## Saniona.uncinata 1.00000000 0.00000000
## Sedum.anglicum 1.00000000 0.00000000
## Senecio.jacobaea 1.00000000 0.00000000
## Senecio.vulgaris 0.00000000 1.00000000
## Sonchus.arvensis 1.00000000 0.00000000
## Stachys.sylvatica 1.00000000 0.00000000
## Stellaria.apetala 1.00000000 0.00000000
## Taraxacum.agg. 0.09302326 0.90697674
## Thuidium.tamariscinum 1.00000000 0.00000000
## Thymus.polytrichus 1.00000000 0.00000000
## Trichostomum.crispulum 1.00000000 0.00000000
## Trifolium.campestre 0.41132075 0.58867925
## Trifolium.dubium 1.00000000 0.00000000
## Trifolium.pratense 1.00000000 0.00000000
## Trifolium.repens 1.00000000 0.00000000
## Trisetum.flavescens 1.00000000 0.00000000
## Tussilago.farfara 1.00000000 0.00000000
## Urtica.diocia 1.00000000 0.00000000
## Veronica.officinalis 1.00000000 0.00000000
## Vicia.sativa 1.00000000 0.00000000
## Viola.riviniana 1.00000000 0.00000000
## Weissia.controversa 1.00000000 0.00000000
## Zygodon.stirtonii 1.00000000 0.00000000
##
## $indval
## 1 5
## Agrostis.spp. 0.205128205 0.00000000
## Agrostis.canina 0.025641026 0.00000000
## Alchemilla.mollis 0.025641026 0.00000000
## Alopercus.pratensis 0.025641026 0.00000000
## Angelica.sylvestris 0.051282051 0.00000000
## Anthoxanthum.odoratum 0.153846154 0.00000000
## Anthyllis.vulneraria 0.086435070 0.07862903
## Aphanes.arvensis 0.076923077 0.00000000
## Arrhenatherum.elatius 0.205128205 0.00000000
## Atrichum.undulatum 0.051282051 0.00000000
## Avenula.pratensis 0.025641026 0.00000000
## Bellis.perennis 0.072924018 0.71559633
## Betula.pubescens 0.025641026 0.00000000
## Blackstonia.perfoliata 0.025641026 0.00000000
## Brachythecium.albicans 0.025641026 0.00000000
## Brachythecium.glareosum 0.025641026 0.00000000
## Brachythecium.mildeanum 0.102564103 0.00000000
## Brachythecium.rutabulum 0.153846154 0.00000000
## Briza.media 0.076923077 0.00000000
## Bromus.hordeaceus 0.025641026 0.00000000
## Bryum.c.f..caespiticium 0.025641026 0.00000000
## Bryum.c.f..pallescens 0.076923077 0.00000000
## Bryum.capillare 0.025641026 0.00000000
## Bryum.spp. 0.076923077 0.00000000
## Calliergonella.cupsidata 0.384615385 0.00000000
## Calypogeia.arguta 0.205128205 0.00000000
## Campanula.rotundifolia 0.025641026 0.00000000
## Carex.distans 0.051282051 0.00000000
## Carex.flacca 0.179487179 0.00000000
## Carex.panicea 0.025641026 0.00000000
## Carlina.vulgaris 0.064717570 0.35977860
## Centaurea.nigra 0.051282051 0.00000000
## Centaurium.erythraea 0.051282051 0.00000000
## Centaurium.littorale 0.102564103 0.00000000
## Centaurium.pulchellum 0.025641026 0.00000000
## Cerastium.fontanum 0.179487179 0.00000000
## Chamaenerion.angustifolium 0.025641026 0.00000000
## Cirriphyllum.piliferum 0.025641026 0.00000000
## Cirsium.arvense 0.076923077 0.00000000
## Cirsium.palustre 0.051282051 0.00000000
## Crepis.capillaris 0.051282051 0.00000000
## Cynosurus.cristatus 0.076923077 0.00000000
## Dactylis.glomerata 0.153846154 0.00000000
## Dactylorhiza.fuchsii 0.051282051 0.00000000
## Danthonia.decumbens 0.025641026 0.00000000
## Daucus.carrota 0.051282051 0.00000000
## Dicranella.spp. 0.025641026 0.00000000
## Dicranum.scoparium 0.128205128 0.00000000
## Epilobium.montanum 0.076923077 0.00000000
## Equisetum.arvense 0.076923077 0.00000000
## Equisteum.variegatum 0.025641026 0.00000000
## Erigeron.acer 0.004514265 0.41197183
## Euphrasia.agg 0.153846154 0.20000000
## Festuca.ovina 0.014212868 0.45380818
## Festuca.rubra 0.100150830 0.36050420
## Festuca.rubra.agg. 0.025641026 0.00000000
## Filipendula.ulmaria 0.076923077 0.00000000
## Fissidens.adianthoides 0.025641026 0.00000000
## Fissidens.dubius 0.051282051 0.00000000
## Fissidens.exilis 0.025641026 0.00000000
## Fragaria.vesca 0.153846154 0.00000000
## Galium.aparine 0.025641026 0.00000000
## Galium.arvense 0.025641026 0.00000000
## Galium.saxatile 0.025641026 0.00000000
## Galium.verum 0.102564103 0.00000000
## Geum.urbanum 0.025641026 0.00000000
## Glechoma.hederacea 0.025641026 0.00000000
## Helicotrichon.spp. 0.025641026 0.00000000
## Heracleum.sphondylium 0.076923077 0.00000000
## Hieracium.spp. 0.025641026 0.00000000
## Holcus.spp. 0.470085470 0.04166667
## Holcus.lanatus 0.307692308 0.00000000
## Holcus.mollis 0.153846154 0.00000000
## Homalothecium.lutescens 0.051282051 0.00000000
## Hylocomium.splendens 0.179487179 0.00000000
## Hypericum.perforatum 0.011432304 0.45541401
## Hypnum.cupressiforme 0.256410256 0.00000000
## Hypnum.imponens 0.025641026 0.00000000
## Hypnum.jutlandicum 0.076923077 0.00000000
## Hypochaeris.radicata 0.025641026 0.00000000
## Kindbergia.praelonga 0.153846154 0.00000000
## Lathyrus.pratensis 0.076923077 0.00000000
## Leontodon.hispidus 0.021116139 0.39705882
## Leontodon.saxatilis 0.000000000 0.50000000
## Leucanthemum.vulgare 0.045510455 0.43173432
## Linum.catharticum 0.128205128 0.00000000
## Lolium.perenne 0.102564103 0.00000000
## Lophocolea.semiteres 0.025641026 0.00000000
## Lotus.corniculatus 0.326717232 0.12523612
## Luzula.multiflora 0.025641026 0.00000000
## Lysimachia.maritima 0.051282051 0.00000000
## Medicago.lupulina 0.065180925 0.18224299
## Myosotis.arvensis 0.128205128 0.00000000
## Ononis.repens 0.205128205 0.00000000
## Oxalis.acetosella 0.025641026 0.00000000
## Pastinaca.sativa 0.025641026 0.00000000
## Pentaglottis.sempervirens 0.025641026 0.00000000
## Pillosella.officinarum 0.108505573 0.57682827
## Plantago.coronopus 0.102564103 0.00000000
## Plantago.lanceolata 0.217916747 0.14588529
## Pleurozium.schreberi 0.102564103 0.00000000
## Poa.annua 0.076923077 0.00000000
## Poa.spp. 0.025641026 0.00000000
## Polytrichum.commune 0.025641026 0.00000000
## Polytrichum.commune.agg. 0.025641026 0.00000000
## Polytrichum.formosum 0.025641026 0.00000000
## Potentilla.reptans 0.039886040 0.24074074
## Prunella.vulgaris 0.128205128 0.00000000
## Pseudoscleropidum.purum 0.205128205 0.00000000
## Pteridium.aquilinum 0.076923077 0.00000000
## Ranunculus.acris 0.025641026 0.00000000
## Ranunculus.repens 0.076923077 0.00000000
## Reseda.lutea 0.025641026 0.00000000
## Rhinanthus.minor 0.025641026 0.00000000
## Rhizomnium.punctatum 0.025641026 0.00000000
## Rhytidadelphus.squarrosus 0.333333333 0.00000000
## Rhytidadelphus.triquetris 0.051282051 0.00000000
## Rubus.fruticosus 0.051282051 0.00000000
## Sanguisorba.minor.spp.minor 0.051282051 0.00000000
## Saniona.uncinata 0.051282051 0.00000000
## Sedum.anglicum 0.025641026 0.00000000
## Senecio.jacobaea 0.051282051 0.00000000
## Senecio.vulgaris 0.000000000 0.50000000
## Sonchus.arvensis 0.025641026 0.00000000
## Stachys.sylvatica 0.051282051 0.00000000
## Stellaria.apetala 0.025641026 0.00000000
## Taraxacum.agg. 0.021466905 0.90697674
## Thuidium.tamariscinum 0.076923077 0.00000000
## Thymus.polytrichus 0.205128205 0.00000000
## Trichostomum.crispulum 0.153846154 0.00000000
## Trifolium.campestre 0.063280116 0.29433962
## Trifolium.dubium 0.051282051 0.00000000
## Trifolium.pratense 0.102564103 0.00000000
## Trifolium.repens 0.128205128 0.00000000
## Trisetum.flavescens 0.102564103 0.00000000
## Tussilago.farfara 0.076923077 0.00000000
## Urtica.diocia 0.102564103 0.00000000
## Veronica.officinalis 0.025641026 0.00000000
## Vicia.sativa 0.025641026 0.00000000
## Viola.riviniana 0.025641026 0.00000000
## Weissia.controversa 0.025641026 0.00000000
## Zygodon.stirtonii 0.025641026 0.00000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 2
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 2 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 2
## Euphrasia.agg Festuca.ovina
## 2 2
## Festuca.rubra Festuca.rubra.agg.
## 2 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 1
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 2
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 2 2
## Leucanthemum.vulgare Linum.catharticum
## 2 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 2
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 2
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 2 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 2 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 2 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 2 1
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.20512821 0.02564103
## Alchemilla.mollis Alopercus.pratensis
## 0.02564103 0.02564103
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.05128205 0.15384615
## Anthyllis.vulneraria Aphanes.arvensis
## 0.08643507 0.07692308
## Arrhenatherum.elatius Atrichum.undulatum
## 0.20512821 0.05128205
## Avenula.pratensis Bellis.perennis
## 0.02564103 0.71559633
## Betula.pubescens Blackstonia.perfoliata
## 0.02564103 0.02564103
## Brachythecium.albicans Brachythecium.glareosum
## 0.02564103 0.02564103
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.10256410 0.15384615
## Briza.media Bromus.hordeaceus
## 0.07692308 0.02564103
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.02564103 0.07692308
## Bryum.capillare Bryum.spp.
## 0.02564103 0.07692308
## Calliergonella.cupsidata Calypogeia.arguta
## 0.38461538 0.20512821
## Campanula.rotundifolia Carex.distans
## 0.02564103 0.05128205
## Carex.flacca Carex.panicea
## 0.17948718 0.02564103
## Carlina.vulgaris Centaurea.nigra
## 0.35977860 0.05128205
## Centaurium.erythraea Centaurium.littorale
## 0.05128205 0.10256410
## Centaurium.pulchellum Cerastium.fontanum
## 0.02564103 0.17948718
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.02564103 0.02564103
## Cirsium.arvense Cirsium.palustre
## 0.07692308 0.05128205
## Crepis.capillaris Cynosurus.cristatus
## 0.05128205 0.07692308
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.15384615 0.05128205
## Danthonia.decumbens Daucus.carrota
## 0.02564103 0.05128205
## Dicranella.spp. Dicranum.scoparium
## 0.02564103 0.12820513
## Epilobium.montanum Equisetum.arvense
## 0.07692308 0.07692308
## Equisteum.variegatum Erigeron.acer
## 0.02564103 0.41197183
## Euphrasia.agg Festuca.ovina
## 0.20000000 0.45380818
## Festuca.rubra Festuca.rubra.agg.
## 0.36050420 0.02564103
## Filipendula.ulmaria Fissidens.adianthoides
## 0.07692308 0.02564103
## Fissidens.dubius Fissidens.exilis
## 0.05128205 0.02564103
## Fragaria.vesca Galium.aparine
## 0.15384615 0.02564103
## Galium.arvense Galium.saxatile
## 0.02564103 0.02564103
## Galium.verum Geum.urbanum
## 0.10256410 0.02564103
## Glechoma.hederacea Helicotrichon.spp.
## 0.02564103 0.02564103
## Heracleum.sphondylium Hieracium.spp.
## 0.07692308 0.02564103
## Holcus.spp. Holcus.lanatus
## 0.47008547 0.30769231
## Holcus.mollis Homalothecium.lutescens
## 0.15384615 0.05128205
## Hylocomium.splendens Hypericum.perforatum
## 0.17948718 0.45541401
## Hypnum.cupressiforme Hypnum.imponens
## 0.25641026 0.02564103
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.07692308 0.02564103
## Kindbergia.praelonga Lathyrus.pratensis
## 0.15384615 0.07692308
## Leontodon.hispidus Leontodon.saxatilis
## 0.39705882 0.50000000
## Leucanthemum.vulgare Linum.catharticum
## 0.43173432 0.12820513
## Lolium.perenne Lophocolea.semiteres
## 0.10256410 0.02564103
## Lotus.corniculatus Luzula.multiflora
## 0.32671723 0.02564103
## Lysimachia.maritima Medicago.lupulina
## 0.05128205 0.18224299
## Myosotis.arvensis Ononis.repens
## 0.12820513 0.20512821
## Oxalis.acetosella Pastinaca.sativa
## 0.02564103 0.02564103
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.02564103 0.57682827
## Plantago.coronopus Plantago.lanceolata
## 0.10256410 0.21791675
## Pleurozium.schreberi Poa.annua
## 0.10256410 0.07692308
## Poa.spp. Polytrichum.commune
## 0.02564103 0.02564103
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.02564103 0.02564103
## Potentilla.reptans Prunella.vulgaris
## 0.24074074 0.12820513
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.20512821 0.07692308
## Ranunculus.acris Ranunculus.repens
## 0.02564103 0.07692308
## Reseda.lutea Rhinanthus.minor
## 0.02564103 0.02564103
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.02564103 0.33333333
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.05128205 0.05128205
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.05128205 0.05128205
## Sedum.anglicum Senecio.jacobaea
## 0.02564103 0.05128205
## Senecio.vulgaris Sonchus.arvensis
## 0.50000000 0.02564103
## Stachys.sylvatica Stellaria.apetala
## 0.05128205 0.02564103
## Taraxacum.agg. Thuidium.tamariscinum
## 0.90697674 0.07692308
## Thymus.polytrichus Trichostomum.crispulum
## 0.20512821 0.15384615
## Trifolium.campestre Trifolium.dubium
## 0.29433962 0.05128205
## Trifolium.pratense Trifolium.repens
## 0.10256410 0.12820513
## Trisetum.flavescens Tussilago.farfara
## 0.10256410 0.07692308
## Urtica.diocia Veronica.officinalis
## 0.10256410 0.02564103
## Vicia.sativa Viola.riviniana
## 0.02564103 0.02564103
## Weissia.controversa Zygodon.stirtonii
## 0.02564103 0.02564103
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.858 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 1.000 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.877 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.063
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.552 0.956
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.871 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.227 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 1.000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.904 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 0.095
## Euphrasia.agg Festuca.ovina
## 0.928 0.065
## Festuca.rubra Festuca.rubra.agg.
## 0.628 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 0.909 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.493 0.737
## Holcus.mollis Homalothecium.lutescens
## 0.912 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.966 0.116
## Hypnum.cupressiforme Hypnum.imponens
## 0.862 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 0.147 0.039
## Leucanthemum.vulgare Linum.catharticum
## 0.110 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.805 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 0.232
## Myosotis.arvensis Ononis.repens
## 1.000 0.812
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.061
## Plantago.coronopus Plantago.lanceolata
## 0.960 0.958
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 0.137 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.924 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.775
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 0.047 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.010 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.857 1.000
## Trifolium.campestre Trifolium.dubium
## 0.241 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 1.000
## Trisetum.flavescens Tussilago.farfara
## 0.918 1.000
## Urtica.diocia Veronica.officinalis
## 0.946 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Taraxacum agg. has a high indval score of 0.907 and a low p value of 0.008. Taraxacum #agg. is the indicator species for Melilite.
clustMerwinite <-cut(PlantChemistry1$Merwinite, 5, labels=FALSE)
MerwiniteIndval <- indval(as.matrix(PlantSpecies1), clustMerwinite, type= "long")
gr <- MerwiniteIndval$maxcls[MerwiniteIndval$pval<=0.05]
iv <- MerwiniteIndval$indcls[MerwiniteIndval$pval<=0.05]
pv <- MerwiniteIndval$pval[MerwiniteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[MerwiniteIndval$pval<=0.05]
MerwiniteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
MerwiniteIndvalsummary <- MerwiniteIndvalsummary [order
(MerwiniteIndvalsummary$group, -MerwiniteIndvalsummary$indval),]
print(MerwiniteIndvalsummary)
## group indval pvalue freq
## Alopercus.pratensis 2 1.0000000 0.029 2
## Avenula.pratensis 2 1.0000000 0.036 12
## Homalothecium.lutescens 2 0.7142857 0.039 7
summary(indval(as.matrix(PlantSpecies1), clustMerwinite))
## cluster indicator_value probability
## Alopercus.pratensis 2 1.0000 0.023
## Avenula.pratensis 2 1.0000 0.026
## Homalothecium.lutescens 2 0.7143 0.044
##
## Sum of probabilities = 132.203
##
## Sum of Indicator Values = 19.22
##
## Sum of Significant Indicator Values = 2.71
##
## Number of Significant Indicators = 3
##
## Significant Indicator Distribution
##
## 2
## 3
print(indval(as.matrix(PlantSpecies1), clustMerwinite))
## $relfrq
## 1 5
## Agrostis.spp. 0.200 0
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.025 0
## Alopercus.pratensis 0.000 1
## Angelica.sylvestris 0.050 0
## Anthoxanthum.odoratum 0.150 0
## Anthyllis.vulneraria 0.125 0
## Aphanes.arvensis 0.075 0
## Arrhenatherum.elatius 0.200 0
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.000 1
## Bellis.perennis 0.275 1
## Betula.pubescens 0.025 0
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.100 0
## Brachythecium.rutabulum 0.150 0
## Briza.media 0.075 0
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.025 0
## Bryum.c.f..pallescens 0.075 0
## Bryum.capillare 0.025 0
## Bryum.spp. 0.075 0
## Calliergonella.cupsidata 0.350 1
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.025 0
## Carex.distans 0.050 0
## Carex.flacca 0.175 0
## Carex.panicea 0.025 0
## Carlina.vulgaris 0.250 0
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.100 0
## Centaurium.pulchellum 0.025 0
## Cerastium.fontanum 0.175 0
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.025 0
## Cirsium.arvense 0.075 0
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.050 0
## Cynosurus.cristatus 0.075 0
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.050 0
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.125 0
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.075 0
## Equisteum.variegatum 0.025 0
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.275 0
## Festuca.ovina 0.150 1
## Festuca.rubra 0.375 0
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.075 0
## Fissidens.adianthoides 0.025 0
## Fissidens.dubius 0.050 0
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.150 0
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.100 0
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.025 0
## Holcus.spp. 0.500 1
## Holcus.lanatus 0.300 0
## Holcus.mollis 0.150 0
## Homalothecium.lutescens 0.025 1
## Hylocomium.splendens 0.175 0
## Hypericum.perforatum 0.150 0
## Hypnum.cupressiforme 0.250 0
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.025 0
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.075 0
## Leontodon.hispidus 0.125 0
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.350 0
## Linum.catharticum 0.125 0
## Lolium.perenne 0.100 0
## Lophocolea.semiteres 0.025 0
## Lotus.corniculatus 0.450 0
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.050 0
## Medicago.lupulina 0.125 0
## Myosotis.arvensis 0.100 1
## Ononis.repens 0.175 1
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.300 0
## Plantago.coronopus 0.100 0
## Plantago.lanceolata 0.300 1
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.075 0
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.100 0
## Prunella.vulgaris 0.125 0
## Pseudoscleropidum.purum 0.200 0
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.075 0
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.300 1
## Rhytidadelphus.triquetris 0.050 0
## Rubus.fruticosus 0.050 0
## Sanguisorba.minor.spp.minor 0.050 0
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.050 0
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.050 0
## Stellaria.apetala 0.025 0
## Taraxacum.agg. 0.275 0
## Thuidium.tamariscinum 0.075 0
## Thymus.polytrichus 0.175 1
## Trichostomum.crispulum 0.150 0
## Trifolium.campestre 0.175 0
## Trifolium.dubium 0.050 0
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.100 1
## Trisetum.flavescens 0.100 0
## Tussilago.farfara 0.075 0
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.025 0
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.025 0
## Zygodon.stirtonii 0.025 0
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.0000000
## Agrostis.canina 1.00000000 0.0000000
## Alchemilla.mollis 1.00000000 0.0000000
## Alopercus.pratensis 0.00000000 1.0000000
## Angelica.sylvestris 1.00000000 0.0000000
## Anthoxanthum.odoratum 1.00000000 0.0000000
## Anthyllis.vulneraria 1.00000000 0.0000000
## Aphanes.arvensis 1.00000000 0.0000000
## Arrhenatherum.elatius 1.00000000 0.0000000
## Atrichum.undulatum 1.00000000 0.0000000
## Avenula.pratensis 0.00000000 1.0000000
## Bellis.perennis 0.13043478 0.8695652
## Betula.pubescens 1.00000000 0.0000000
## Blackstonia.perfoliata 1.00000000 0.0000000
## Brachythecium.albicans 1.00000000 0.0000000
## Brachythecium.glareosum 1.00000000 0.0000000
## Brachythecium.mildeanum 1.00000000 0.0000000
## Brachythecium.rutabulum 1.00000000 0.0000000
## Briza.media 1.00000000 0.0000000
## Bromus.hordeaceus 1.00000000 0.0000000
## Bryum.c.f..caespiticium 1.00000000 0.0000000
## Bryum.c.f..pallescens 1.00000000 0.0000000
## Bryum.capillare 1.00000000 0.0000000
## Bryum.spp. 1.00000000 0.0000000
## Calliergonella.cupsidata 0.68992248 0.3100775
## Calypogeia.arguta 1.00000000 0.0000000
## Campanula.rotundifolia 1.00000000 0.0000000
## Carex.distans 1.00000000 0.0000000
## Carex.flacca 1.00000000 0.0000000
## Carex.panicea 1.00000000 0.0000000
## Carlina.vulgaris 1.00000000 0.0000000
## Centaurea.nigra 1.00000000 0.0000000
## Centaurium.erythraea 1.00000000 0.0000000
## Centaurium.littorale 1.00000000 0.0000000
## Centaurium.pulchellum 1.00000000 0.0000000
## Cerastium.fontanum 1.00000000 0.0000000
## Chamaenerion.angustifolium 1.00000000 0.0000000
## Cirriphyllum.piliferum 1.00000000 0.0000000
## Cirsium.arvense 1.00000000 0.0000000
## Cirsium.palustre 1.00000000 0.0000000
## Crepis.capillaris 1.00000000 0.0000000
## Cynosurus.cristatus 1.00000000 0.0000000
## Dactylis.glomerata 1.00000000 0.0000000
## Dactylorhiza.fuchsii 1.00000000 0.0000000
## Danthonia.decumbens 1.00000000 0.0000000
## Daucus.carrota 1.00000000 0.0000000
## Dicranella.spp. 1.00000000 0.0000000
## Dicranum.scoparium 1.00000000 0.0000000
## Epilobium.montanum 1.00000000 0.0000000
## Equisetum.arvense 1.00000000 0.0000000
## Equisteum.variegatum 1.00000000 0.0000000
## Erigeron.acer 1.00000000 0.0000000
## Euphrasia.agg 1.00000000 0.0000000
## Festuca.ovina 0.48979592 0.5102041
## Festuca.rubra 1.00000000 0.0000000
## Festuca.rubra.agg. 1.00000000 0.0000000
## Filipendula.ulmaria 1.00000000 0.0000000
## Fissidens.adianthoides 1.00000000 0.0000000
## Fissidens.dubius 1.00000000 0.0000000
## Fissidens.exilis 1.00000000 0.0000000
## Fragaria.vesca 1.00000000 0.0000000
## Galium.aparine 1.00000000 0.0000000
## Galium.arvense 1.00000000 0.0000000
## Galium.saxatile 1.00000000 0.0000000
## Galium.verum 1.00000000 0.0000000
## Geum.urbanum 1.00000000 0.0000000
## Glechoma.hederacea 1.00000000 0.0000000
## Helicotrichon.spp. 1.00000000 0.0000000
## Heracleum.sphondylium 1.00000000 0.0000000
## Hieracium.spp. 1.00000000 0.0000000
## Holcus.spp. 0.47697555 0.5230244
## Holcus.lanatus 1.00000000 0.0000000
## Holcus.mollis 1.00000000 0.0000000
## Homalothecium.lutescens 0.28571429 0.7142857
## Hylocomium.splendens 1.00000000 0.0000000
## Hypericum.perforatum 1.00000000 0.0000000
## Hypnum.cupressiforme 1.00000000 0.0000000
## Hypnum.imponens 1.00000000 0.0000000
## Hypnum.jutlandicum 1.00000000 0.0000000
## Hypochaeris.radicata 1.00000000 0.0000000
## Kindbergia.praelonga 1.00000000 0.0000000
## Lathyrus.pratensis 1.00000000 0.0000000
## Leontodon.hispidus 1.00000000 0.0000000
## Leontodon.saxatilis 1.00000000 0.0000000
## Leucanthemum.vulgare 1.00000000 0.0000000
## Linum.catharticum 1.00000000 0.0000000
## Lolium.perenne 1.00000000 0.0000000
## Lophocolea.semiteres 1.00000000 0.0000000
## Lotus.corniculatus 1.00000000 0.0000000
## Luzula.multiflora 1.00000000 0.0000000
## Lysimachia.maritima 1.00000000 0.0000000
## Medicago.lupulina 1.00000000 0.0000000
## Myosotis.arvensis 0.06976744 0.9302326
## Ononis.repens 0.09871245 0.9012876
## Oxalis.acetosella 1.00000000 0.0000000
## Pastinaca.sativa 1.00000000 0.0000000
## Pentaglottis.sempervirens 1.00000000 0.0000000
## Pillosella.officinarum 1.00000000 0.0000000
## Plantago.coronopus 1.00000000 0.0000000
## Plantago.lanceolata 0.78260870 0.2173913
## Pleurozium.schreberi 1.00000000 0.0000000
## Poa.annua 1.00000000 0.0000000
## Poa.spp. 1.00000000 0.0000000
## Polytrichum.commune 1.00000000 0.0000000
## Polytrichum.commune.agg. 1.00000000 0.0000000
## Polytrichum.formosum 1.00000000 0.0000000
## Potentilla.reptans 1.00000000 0.0000000
## Prunella.vulgaris 1.00000000 0.0000000
## Pseudoscleropidum.purum 1.00000000 0.0000000
## Pteridium.aquilinum 1.00000000 0.0000000
## Ranunculus.acris 1.00000000 0.0000000
## Ranunculus.repens 1.00000000 0.0000000
## Reseda.lutea 1.00000000 0.0000000
## Rhinanthus.minor 1.00000000 0.0000000
## Rhizomnium.punctatum 1.00000000 0.0000000
## Rhytidadelphus.squarrosus 0.60784314 0.3921569
## Rhytidadelphus.triquetris 1.00000000 0.0000000
## Rubus.fruticosus 1.00000000 0.0000000
## Sanguisorba.minor.spp.minor 1.00000000 0.0000000
## Saniona.uncinata 1.00000000 0.0000000
## Sedum.anglicum 1.00000000 0.0000000
## Senecio.jacobaea 1.00000000 0.0000000
## Senecio.vulgaris 1.00000000 0.0000000
## Sonchus.arvensis 1.00000000 0.0000000
## Stachys.sylvatica 1.00000000 0.0000000
## Stellaria.apetala 1.00000000 0.0000000
## Taraxacum.agg. 1.00000000 0.0000000
## Thuidium.tamariscinum 1.00000000 0.0000000
## Thymus.polytrichus 0.54802260 0.4519774
## Trichostomum.crispulum 1.00000000 0.0000000
## Trifolium.campestre 1.00000000 0.0000000
## Trifolium.dubium 1.00000000 0.0000000
## Trifolium.pratense 1.00000000 0.0000000
## Trifolium.repens 0.42028986 0.5797101
## Trisetum.flavescens 1.00000000 0.0000000
## Tussilago.farfara 1.00000000 0.0000000
## Urtica.diocia 1.00000000 0.0000000
## Veronica.officinalis 1.00000000 0.0000000
## Vicia.sativa 1.00000000 0.0000000
## Viola.riviniana 1.00000000 0.0000000
## Weissia.controversa 1.00000000 0.0000000
## Zygodon.stirtonii 1.00000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.200000000 0.0000000
## Agrostis.canina 0.025000000 0.0000000
## Alchemilla.mollis 0.025000000 0.0000000
## Alopercus.pratensis 0.000000000 1.0000000
## Angelica.sylvestris 0.050000000 0.0000000
## Anthoxanthum.odoratum 0.150000000 0.0000000
## Anthyllis.vulneraria 0.125000000 0.0000000
## Aphanes.arvensis 0.075000000 0.0000000
## Arrhenatherum.elatius 0.200000000 0.0000000
## Atrichum.undulatum 0.050000000 0.0000000
## Avenula.pratensis 0.000000000 1.0000000
## Bellis.perennis 0.035869565 0.8695652
## Betula.pubescens 0.025000000 0.0000000
## Blackstonia.perfoliata 0.025000000 0.0000000
## Brachythecium.albicans 0.025000000 0.0000000
## Brachythecium.glareosum 0.025000000 0.0000000
## Brachythecium.mildeanum 0.100000000 0.0000000
## Brachythecium.rutabulum 0.150000000 0.0000000
## Briza.media 0.075000000 0.0000000
## Bromus.hordeaceus 0.025000000 0.0000000
## Bryum.c.f..caespiticium 0.025000000 0.0000000
## Bryum.c.f..pallescens 0.075000000 0.0000000
## Bryum.capillare 0.025000000 0.0000000
## Bryum.spp. 0.075000000 0.0000000
## Calliergonella.cupsidata 0.241472868 0.3100775
## Calypogeia.arguta 0.200000000 0.0000000
## Campanula.rotundifolia 0.025000000 0.0000000
## Carex.distans 0.050000000 0.0000000
## Carex.flacca 0.175000000 0.0000000
## Carex.panicea 0.025000000 0.0000000
## Carlina.vulgaris 0.250000000 0.0000000
## Centaurea.nigra 0.050000000 0.0000000
## Centaurium.erythraea 0.050000000 0.0000000
## Centaurium.littorale 0.100000000 0.0000000
## Centaurium.pulchellum 0.025000000 0.0000000
## Cerastium.fontanum 0.175000000 0.0000000
## Chamaenerion.angustifolium 0.025000000 0.0000000
## Cirriphyllum.piliferum 0.025000000 0.0000000
## Cirsium.arvense 0.075000000 0.0000000
## Cirsium.palustre 0.050000000 0.0000000
## Crepis.capillaris 0.050000000 0.0000000
## Cynosurus.cristatus 0.075000000 0.0000000
## Dactylis.glomerata 0.150000000 0.0000000
## Dactylorhiza.fuchsii 0.050000000 0.0000000
## Danthonia.decumbens 0.025000000 0.0000000
## Daucus.carrota 0.050000000 0.0000000
## Dicranella.spp. 0.025000000 0.0000000
## Dicranum.scoparium 0.125000000 0.0000000
## Epilobium.montanum 0.075000000 0.0000000
## Equisetum.arvense 0.075000000 0.0000000
## Equisteum.variegatum 0.025000000 0.0000000
## Erigeron.acer 0.050000000 0.0000000
## Euphrasia.agg 0.275000000 0.0000000
## Festuca.ovina 0.073469388 0.5102041
## Festuca.rubra 0.375000000 0.0000000
## Festuca.rubra.agg. 0.025000000 0.0000000
## Filipendula.ulmaria 0.075000000 0.0000000
## Fissidens.adianthoides 0.025000000 0.0000000
## Fissidens.dubius 0.050000000 0.0000000
## Fissidens.exilis 0.025000000 0.0000000
## Fragaria.vesca 0.150000000 0.0000000
## Galium.aparine 0.025000000 0.0000000
## Galium.arvense 0.025000000 0.0000000
## Galium.saxatile 0.025000000 0.0000000
## Galium.verum 0.100000000 0.0000000
## Geum.urbanum 0.025000000 0.0000000
## Glechoma.hederacea 0.025000000 0.0000000
## Helicotrichon.spp. 0.025000000 0.0000000
## Heracleum.sphondylium 0.075000000 0.0000000
## Hieracium.spp. 0.025000000 0.0000000
## Holcus.spp. 0.238487777 0.5230244
## Holcus.lanatus 0.300000000 0.0000000
## Holcus.mollis 0.150000000 0.0000000
## Homalothecium.lutescens 0.007142857 0.7142857
## Hylocomium.splendens 0.175000000 0.0000000
## Hypericum.perforatum 0.150000000 0.0000000
## Hypnum.cupressiforme 0.250000000 0.0000000
## Hypnum.imponens 0.025000000 0.0000000
## Hypnum.jutlandicum 0.075000000 0.0000000
## Hypochaeris.radicata 0.025000000 0.0000000
## Kindbergia.praelonga 0.150000000 0.0000000
## Lathyrus.pratensis 0.075000000 0.0000000
## Leontodon.hispidus 0.125000000 0.0000000
## Leontodon.saxatilis 0.025000000 0.0000000
## Leucanthemum.vulgare 0.350000000 0.0000000
## Linum.catharticum 0.125000000 0.0000000
## Lolium.perenne 0.100000000 0.0000000
## Lophocolea.semiteres 0.025000000 0.0000000
## Lotus.corniculatus 0.450000000 0.0000000
## Luzula.multiflora 0.025000000 0.0000000
## Lysimachia.maritima 0.050000000 0.0000000
## Medicago.lupulina 0.125000000 0.0000000
## Myosotis.arvensis 0.006976744 0.9302326
## Ononis.repens 0.017274678 0.9012876
## Oxalis.acetosella 0.025000000 0.0000000
## Pastinaca.sativa 0.025000000 0.0000000
## Pentaglottis.sempervirens 0.025000000 0.0000000
## Pillosella.officinarum 0.300000000 0.0000000
## Plantago.coronopus 0.100000000 0.0000000
## Plantago.lanceolata 0.234782609 0.2173913
## Pleurozium.schreberi 0.100000000 0.0000000
## Poa.annua 0.075000000 0.0000000
## Poa.spp. 0.025000000 0.0000000
## Polytrichum.commune 0.025000000 0.0000000
## Polytrichum.commune.agg. 0.025000000 0.0000000
## Polytrichum.formosum 0.025000000 0.0000000
## Potentilla.reptans 0.100000000 0.0000000
## Prunella.vulgaris 0.125000000 0.0000000
## Pseudoscleropidum.purum 0.200000000 0.0000000
## Pteridium.aquilinum 0.075000000 0.0000000
## Ranunculus.acris 0.025000000 0.0000000
## Ranunculus.repens 0.075000000 0.0000000
## Reseda.lutea 0.025000000 0.0000000
## Rhinanthus.minor 0.025000000 0.0000000
## Rhizomnium.punctatum 0.025000000 0.0000000
## Rhytidadelphus.squarrosus 0.182352941 0.3921569
## Rhytidadelphus.triquetris 0.050000000 0.0000000
## Rubus.fruticosus 0.050000000 0.0000000
## Sanguisorba.minor.spp.minor 0.050000000 0.0000000
## Saniona.uncinata 0.050000000 0.0000000
## Sedum.anglicum 0.025000000 0.0000000
## Senecio.jacobaea 0.050000000 0.0000000
## Senecio.vulgaris 0.025000000 0.0000000
## Sonchus.arvensis 0.025000000 0.0000000
## Stachys.sylvatica 0.050000000 0.0000000
## Stellaria.apetala 0.025000000 0.0000000
## Taraxacum.agg. 0.275000000 0.0000000
## Thuidium.tamariscinum 0.075000000 0.0000000
## Thymus.polytrichus 0.095903955 0.4519774
## Trichostomum.crispulum 0.150000000 0.0000000
## Trifolium.campestre 0.175000000 0.0000000
## Trifolium.dubium 0.050000000 0.0000000
## Trifolium.pratense 0.100000000 0.0000000
## Trifolium.repens 0.042028986 0.5797101
## Trisetum.flavescens 0.100000000 0.0000000
## Tussilago.farfara 0.075000000 0.0000000
## Urtica.diocia 0.100000000 0.0000000
## Veronica.officinalis 0.025000000 0.0000000
## Vicia.sativa 0.025000000 0.0000000
## Viola.riviniana 0.025000000 0.0000000
## Weissia.controversa 0.025000000 0.0000000
## Zygodon.stirtonii 0.025000000 0.0000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 2
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 2 2
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 2 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 2
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 2 1
## Holcus.mollis Homalothecium.lutescens
## 1 2
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 2 2
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 2
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 2 1
## Trifolium.campestre Trifolium.dubium
## 1 1
## Trifolium.pratense Trifolium.repens
## 1 2
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.2000000 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 0.0250000 1.0000000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.0500000 0.1500000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.1250000 0.0750000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.2000000 0.0500000
## Avenula.pratensis Bellis.perennis
## 1.0000000 0.8695652
## Betula.pubescens Blackstonia.perfoliata
## 0.0250000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.1000000 0.1500000
## Briza.media Bromus.hordeaceus
## 0.0750000 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.0250000 0.0750000
## Bryum.capillare Bryum.spp.
## 0.0250000 0.0750000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.3100775 0.2000000
## Campanula.rotundifolia Carex.distans
## 0.0250000 0.0500000
## Carex.flacca Carex.panicea
## 0.1750000 0.0250000
## Carlina.vulgaris Centaurea.nigra
## 0.2500000 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.1000000
## Centaurium.pulchellum Cerastium.fontanum
## 0.0250000 0.1750000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 0.0250000
## Cirsium.arvense Cirsium.palustre
## 0.0750000 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.0500000 0.0750000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.0500000
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.1250000
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.0750000
## Equisteum.variegatum Erigeron.acer
## 0.0250000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.2750000 0.5102041
## Festuca.rubra Festuca.rubra.agg.
## 0.3750000 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.0750000 0.0250000
## Fissidens.dubius Fissidens.exilis
## 0.0500000 0.0250000
## Fragaria.vesca Galium.aparine
## 0.1500000 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.1000000 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 0.0250000
## Holcus.spp. Holcus.lanatus
## 0.5230244 0.3000000
## Holcus.mollis Homalothecium.lutescens
## 0.1500000 0.7142857
## Hylocomium.splendens Hypericum.perforatum
## 0.1750000 0.1500000
## Hypnum.cupressiforme Hypnum.imponens
## 0.2500000 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 0.0250000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.0750000
## Leontodon.hispidus Leontodon.saxatilis
## 0.1250000 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.3500000 0.1250000
## Lolium.perenne Lophocolea.semiteres
## 0.1000000 0.0250000
## Lotus.corniculatus Luzula.multiflora
## 0.4500000 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.0500000 0.1250000
## Myosotis.arvensis Ononis.repens
## 0.9302326 0.9012876
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.3000000
## Plantago.coronopus Plantago.lanceolata
## 0.1000000 0.2347826
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.0750000
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.1000000 0.1250000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.2000000 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.0750000
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.3921569
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.0500000 0.0500000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.0500000 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.0500000
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.0500000 0.0250000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.2750000 0.0750000
## Thymus.polytrichus Trichostomum.crispulum
## 0.4519774 0.1500000
## Trifolium.campestre Trifolium.dubium
## 0.1750000 0.0500000
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.5797101
## Trisetum.flavescens Tussilago.farfara
## 0.1000000 0.0750000
## Urtica.diocia Veronica.officinalis
## 0.1000000 0.0250000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 0.0250000 0.0250000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1.000 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 0.022
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 1.000 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 1.000 1.000
## Avenula.pratensis Bellis.perennis
## 0.035 0.075
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 1.000 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.969 1.000
## Carlina.vulgaris Centaurea.nigra
## 1.000 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 1.000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.950 0.149
## Festuca.rubra Festuca.rubra.agg.
## 0.914 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 1.000 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.840 0.947
## Holcus.mollis Homalothecium.lutescens
## 0.972 0.050
## Hylocomium.splendens Hypericum.perforatum
## 0.985 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 1.000 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.931 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.781 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 0.049 0.076
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.869
## Plantago.coronopus Plantago.lanceolata
## 1.000 1.000
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1.000 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.309
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.160 1.000
## Trifolium.campestre Trifolium.dubium
## 1.000 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 0.120
## Trisetum.flavescens Tussilago.farfara
## 1.000 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Both Alopercus pratensis and Avenula pratensis have high indval scores of 1, the former has #a p value of 0.022 and the latter has a p value of 0.028. Both species are reported as #indicator species for Merwinite.
clustMicrocline <-cut(PlantChemistry1$Microcline, 5, labels=FALSE)
MicroclineIndval <- indval(as.matrix(PlantSpecies1), clustMicrocline, type= "long")
gr <- MicroclineIndval$maxcls[MicroclineIndval$pval<=0.05]
iv <- MicroclineIndval$indcls[MicroclineIndval$pval<=0.05]
pv <- MicroclineIndval$pval[MicroclineIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[MicroclineIndval$pval<=0.05]
MicroclineIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
MicroclineIndvalsummary <- MicroclineIndvalsummary [order
(MicroclineIndvalsummary$group, -MicroclineIndvalsummary$indval),]
print(MicroclineIndvalsummary)
## group indval pvalue freq
## Stellaria.apetala 2 1.0000000 0.030 11
## Potentilla.reptans 2 0.9952925 0.022 5
## Cynosurus.cristatus 2 0.9858512 0.023 6
## Carex.flacca 2 0.9838082 0.027 1
## Lathyrus.pratensis 2 0.9722222 0.026 5
summary(indval(as.matrix(PlantSpecies1), clustMicrocline))
## cluster indicator_value probability
## Stellaria.apetala 2 1.0000 0.029
## Potentilla.reptans 2 0.9953 0.035
## Cynosurus.cristatus 2 0.9859 0.023
## Carex.flacca 2 0.9838 0.029
## Lathyrus.pratensis 2 0.9722 0.024
##
## Sum of probabilities = 130.376
##
## Sum of Indicator Values = 21.23
##
## Sum of Significant Indicator Values = 4.94
##
## Number of Significant Indicators = 5
##
## Significant Indicator Distribution
##
## 2
## 5
print(indval(as.matrix(PlantSpecies1), clustMicrocline))
## $relfrq
## 1 5
## Agrostis.spp. 0.200 0
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.025 0
## Alopercus.pratensis 0.025 0
## Angelica.sylvestris 0.050 0
## Anthoxanthum.odoratum 0.150 0
## Anthyllis.vulneraria 0.125 0
## Aphanes.arvensis 0.050 1
## Arrhenatherum.elatius 0.200 0
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.025 0
## Bellis.perennis 0.300 0
## Betula.pubescens 0.025 0
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.100 0
## Brachythecium.rutabulum 0.150 0
## Briza.media 0.075 0
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.025 0
## Bryum.c.f..pallescens 0.075 0
## Bryum.capillare 0.025 0
## Bryum.spp. 0.075 0
## Calliergonella.cupsidata 0.350 1
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.025 0
## Carex.distans 0.050 0
## Carex.flacca 0.150 1
## Carex.panicea 0.025 0
## Carlina.vulgaris 0.250 0
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.100 0
## Centaurium.pulchellum 0.025 0
## Cerastium.fontanum 0.150 1
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.025 0
## Cirsium.arvense 0.075 0
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.050 0
## Cynosurus.cristatus 0.050 1
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.050 0
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.125 0
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.075 0
## Equisteum.variegatum 0.025 0
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.275 0
## Festuca.ovina 0.175 0
## Festuca.rubra 0.350 1
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.075 0
## Fissidens.adianthoides 0.025 0
## Fissidens.dubius 0.050 0
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.150 0
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.100 0
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.025 0
## Holcus.spp. 0.500 1
## Holcus.lanatus 0.300 0
## Holcus.mollis 0.150 0
## Homalothecium.lutescens 0.050 0
## Hylocomium.splendens 0.175 0
## Hypericum.perforatum 0.150 0
## Hypnum.cupressiforme 0.250 0
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.025 0
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.050 1
## Leontodon.hispidus 0.125 0
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.350 0
## Linum.catharticum 0.125 0
## Lolium.perenne 0.075 1
## Lophocolea.semiteres 0.025 0
## Lotus.corniculatus 0.450 0
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.050 0
## Medicago.lupulina 0.125 0
## Myosotis.arvensis 0.125 0
## Ononis.repens 0.200 0
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.300 0
## Plantago.coronopus 0.100 0
## Plantago.lanceolata 0.300 1
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.075 0
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.075 1
## Prunella.vulgaris 0.100 1
## Pseudoscleropidum.purum 0.200 0
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.075 0
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.325 0
## Rhytidadelphus.triquetris 0.050 0
## Rubus.fruticosus 0.050 0
## Sanguisorba.minor.spp.minor 0.050 0
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.050 0
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.050 0
## Stellaria.apetala 0.000 1
## Taraxacum.agg. 0.275 0
## Thuidium.tamariscinum 0.075 0
## Thymus.polytrichus 0.200 0
## Trichostomum.crispulum 0.150 0
## Trifolium.campestre 0.150 1
## Trifolium.dubium 0.050 0
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.100 1
## Trisetum.flavescens 0.100 0
## Tussilago.farfara 0.075 0
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.025 0
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.025 0
## Zygodon.stirtonii 0.025 0
##
## $relabu
## 1 5
## Agrostis.spp. 1.000000000 0.0000000
## Agrostis.canina 1.000000000 0.0000000
## Alchemilla.mollis 1.000000000 0.0000000
## Alopercus.pratensis 1.000000000 0.0000000
## Angelica.sylvestris 1.000000000 0.0000000
## Anthoxanthum.odoratum 1.000000000 0.0000000
## Anthyllis.vulneraria 1.000000000 0.0000000
## Aphanes.arvensis 0.285714286 0.7142857
## Arrhenatherum.elatius 1.000000000 0.0000000
## Atrichum.undulatum 1.000000000 0.0000000
## Avenula.pratensis 1.000000000 0.0000000
## Bellis.perennis 1.000000000 0.0000000
## Betula.pubescens 1.000000000 0.0000000
## Blackstonia.perfoliata 1.000000000 0.0000000
## Brachythecium.albicans 1.000000000 0.0000000
## Brachythecium.glareosum 1.000000000 0.0000000
## Brachythecium.mildeanum 1.000000000 0.0000000
## Brachythecium.rutabulum 1.000000000 0.0000000
## Briza.media 1.000000000 0.0000000
## Bromus.hordeaceus 1.000000000 0.0000000
## Bryum.c.f..caespiticium 1.000000000 0.0000000
## Bryum.c.f..pallescens 1.000000000 0.0000000
## Bryum.capillare 1.000000000 0.0000000
## Bryum.spp. 1.000000000 0.0000000
## Calliergonella.cupsidata 0.689922481 0.3100775
## Calypogeia.arguta 1.000000000 0.0000000
## Campanula.rotundifolia 1.000000000 0.0000000
## Carex.distans 1.000000000 0.0000000
## Carex.flacca 0.016191843 0.9838082
## Carex.panicea 1.000000000 0.0000000
## Carlina.vulgaris 1.000000000 0.0000000
## Centaurea.nigra 1.000000000 0.0000000
## Centaurium.erythraea 1.000000000 0.0000000
## Centaurium.littorale 1.000000000 0.0000000
## Centaurium.pulchellum 1.000000000 0.0000000
## Cerastium.fontanum 0.230769231 0.7692308
## Chamaenerion.angustifolium 1.000000000 0.0000000
## Cirriphyllum.piliferum 1.000000000 0.0000000
## Cirsium.arvense 1.000000000 0.0000000
## Cirsium.palustre 1.000000000 0.0000000
## Crepis.capillaris 1.000000000 0.0000000
## Cynosurus.cristatus 0.014148791 0.9858512
## Dactylis.glomerata 1.000000000 0.0000000
## Dactylorhiza.fuchsii 1.000000000 0.0000000
## Danthonia.decumbens 1.000000000 0.0000000
## Daucus.carrota 1.000000000 0.0000000
## Dicranella.spp. 1.000000000 0.0000000
## Dicranum.scoparium 1.000000000 0.0000000
## Epilobium.montanum 1.000000000 0.0000000
## Equisetum.arvense 1.000000000 0.0000000
## Equisteum.variegatum 1.000000000 0.0000000
## Erigeron.acer 1.000000000 0.0000000
## Euphrasia.agg 1.000000000 0.0000000
## Festuca.ovina 1.000000000 0.0000000
## Festuca.rubra 0.165839126 0.8341609
## Festuca.rubra.agg. 1.000000000 0.0000000
## Filipendula.ulmaria 1.000000000 0.0000000
## Fissidens.adianthoides 1.000000000 0.0000000
## Fissidens.dubius 1.000000000 0.0000000
## Fissidens.exilis 1.000000000 0.0000000
## Fragaria.vesca 1.000000000 0.0000000
## Galium.aparine 1.000000000 0.0000000
## Galium.arvense 1.000000000 0.0000000
## Galium.saxatile 1.000000000 0.0000000
## Galium.verum 1.000000000 0.0000000
## Geum.urbanum 1.000000000 0.0000000
## Glechoma.hederacea 1.000000000 0.0000000
## Helicotrichon.spp. 1.000000000 0.0000000
## Heracleum.sphondylium 1.000000000 0.0000000
## Hieracium.spp. 1.000000000 0.0000000
## Holcus.spp. 0.680511182 0.3194888
## Holcus.lanatus 1.000000000 0.0000000
## Holcus.mollis 1.000000000 0.0000000
## Homalothecium.lutescens 1.000000000 0.0000000
## Hylocomium.splendens 1.000000000 0.0000000
## Hypericum.perforatum 1.000000000 0.0000000
## Hypnum.cupressiforme 1.000000000 0.0000000
## Hypnum.imponens 1.000000000 0.0000000
## Hypnum.jutlandicum 1.000000000 0.0000000
## Hypochaeris.radicata 1.000000000 0.0000000
## Kindbergia.praelonga 1.000000000 0.0000000
## Lathyrus.pratensis 0.027777778 0.9722222
## Leontodon.hispidus 1.000000000 0.0000000
## Leontodon.saxatilis 1.000000000 0.0000000
## Leucanthemum.vulgare 1.000000000 0.0000000
## Linum.catharticum 1.000000000 0.0000000
## Lolium.perenne 0.534883721 0.4651163
## Lophocolea.semiteres 1.000000000 0.0000000
## Lotus.corniculatus 1.000000000 0.0000000
## Luzula.multiflora 1.000000000 0.0000000
## Lysimachia.maritima 1.000000000 0.0000000
## Medicago.lupulina 1.000000000 0.0000000
## Myosotis.arvensis 1.000000000 0.0000000
## Ononis.repens 1.000000000 0.0000000
## Oxalis.acetosella 1.000000000 0.0000000
## Pastinaca.sativa 1.000000000 0.0000000
## Pentaglottis.sempervirens 1.000000000 0.0000000
## Pillosella.officinarum 1.000000000 0.0000000
## Plantago.coronopus 1.000000000 0.0000000
## Plantago.lanceolata 0.782608696 0.2173913
## Pleurozium.schreberi 1.000000000 0.0000000
## Poa.annua 1.000000000 0.0000000
## Poa.spp. 1.000000000 0.0000000
## Polytrichum.commune 1.000000000 0.0000000
## Polytrichum.commune.agg. 1.000000000 0.0000000
## Polytrichum.formosum 1.000000000 0.0000000
## Potentilla.reptans 0.004707465 0.9952925
## Prunella.vulgaris 0.111111111 0.8888889
## Pseudoscleropidum.purum 1.000000000 0.0000000
## Pteridium.aquilinum 1.000000000 0.0000000
## Ranunculus.acris 1.000000000 0.0000000
## Ranunculus.repens 1.000000000 0.0000000
## Reseda.lutea 1.000000000 0.0000000
## Rhinanthus.minor 1.000000000 0.0000000
## Rhizomnium.punctatum 1.000000000 0.0000000
## Rhytidadelphus.squarrosus 1.000000000 0.0000000
## Rhytidadelphus.triquetris 1.000000000 0.0000000
## Rubus.fruticosus 1.000000000 0.0000000
## Sanguisorba.minor.spp.minor 1.000000000 0.0000000
## Saniona.uncinata 1.000000000 0.0000000
## Sedum.anglicum 1.000000000 0.0000000
## Senecio.jacobaea 1.000000000 0.0000000
## Senecio.vulgaris 1.000000000 0.0000000
## Sonchus.arvensis 1.000000000 0.0000000
## Stachys.sylvatica 1.000000000 0.0000000
## Stellaria.apetala 0.000000000 1.0000000
## Taraxacum.agg. 1.000000000 0.0000000
## Thuidium.tamariscinum 1.000000000 0.0000000
## Thymus.polytrichus 1.000000000 0.0000000
## Trichostomum.crispulum 1.000000000 0.0000000
## Trifolium.campestre 0.589743590 0.4102564
## Trifolium.dubium 1.000000000 0.0000000
## Trifolium.pratense 1.000000000 0.0000000
## Trifolium.repens 0.420289855 0.5797101
## Trisetum.flavescens 1.000000000 0.0000000
## Tussilago.farfara 1.000000000 0.0000000
## Urtica.diocia 1.000000000 0.0000000
## Veronica.officinalis 1.000000000 0.0000000
## Vicia.sativa 1.000000000 0.0000000
## Viola.riviniana 1.000000000 0.0000000
## Weissia.controversa 1.000000000 0.0000000
## Zygodon.stirtonii 1.000000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.2000000000 0.0000000
## Agrostis.canina 0.0250000000 0.0000000
## Alchemilla.mollis 0.0250000000 0.0000000
## Alopercus.pratensis 0.0250000000 0.0000000
## Angelica.sylvestris 0.0500000000 0.0000000
## Anthoxanthum.odoratum 0.1500000000 0.0000000
## Anthyllis.vulneraria 0.1250000000 0.0000000
## Aphanes.arvensis 0.0142857143 0.7142857
## Arrhenatherum.elatius 0.2000000000 0.0000000
## Atrichum.undulatum 0.0500000000 0.0000000
## Avenula.pratensis 0.0250000000 0.0000000
## Bellis.perennis 0.3000000000 0.0000000
## Betula.pubescens 0.0250000000 0.0000000
## Blackstonia.perfoliata 0.0250000000 0.0000000
## Brachythecium.albicans 0.0250000000 0.0000000
## Brachythecium.glareosum 0.0250000000 0.0000000
## Brachythecium.mildeanum 0.1000000000 0.0000000
## Brachythecium.rutabulum 0.1500000000 0.0000000
## Briza.media 0.0750000000 0.0000000
## Bromus.hordeaceus 0.0250000000 0.0000000
## Bryum.c.f..caespiticium 0.0250000000 0.0000000
## Bryum.c.f..pallescens 0.0750000000 0.0000000
## Bryum.capillare 0.0250000000 0.0000000
## Bryum.spp. 0.0750000000 0.0000000
## Calliergonella.cupsidata 0.2414728682 0.3100775
## Calypogeia.arguta 0.2000000000 0.0000000
## Campanula.rotundifolia 0.0250000000 0.0000000
## Carex.distans 0.0500000000 0.0000000
## Carex.flacca 0.0024287764 0.9838082
## Carex.panicea 0.0250000000 0.0000000
## Carlina.vulgaris 0.2500000000 0.0000000
## Centaurea.nigra 0.0500000000 0.0000000
## Centaurium.erythraea 0.0500000000 0.0000000
## Centaurium.littorale 0.1000000000 0.0000000
## Centaurium.pulchellum 0.0250000000 0.0000000
## Cerastium.fontanum 0.0346153846 0.7692308
## Chamaenerion.angustifolium 0.0250000000 0.0000000
## Cirriphyllum.piliferum 0.0250000000 0.0000000
## Cirsium.arvense 0.0750000000 0.0000000
## Cirsium.palustre 0.0500000000 0.0000000
## Crepis.capillaris 0.0500000000 0.0000000
## Cynosurus.cristatus 0.0007074395 0.9858512
## Dactylis.glomerata 0.1500000000 0.0000000
## Dactylorhiza.fuchsii 0.0500000000 0.0000000
## Danthonia.decumbens 0.0250000000 0.0000000
## Daucus.carrota 0.0500000000 0.0000000
## Dicranella.spp. 0.0250000000 0.0000000
## Dicranum.scoparium 0.1250000000 0.0000000
## Epilobium.montanum 0.0750000000 0.0000000
## Equisetum.arvense 0.0750000000 0.0000000
## Equisteum.variegatum 0.0250000000 0.0000000
## Erigeron.acer 0.0500000000 0.0000000
## Euphrasia.agg 0.2750000000 0.0000000
## Festuca.ovina 0.1750000000 0.0000000
## Festuca.rubra 0.0580436941 0.8341609
## Festuca.rubra.agg. 0.0250000000 0.0000000
## Filipendula.ulmaria 0.0750000000 0.0000000
## Fissidens.adianthoides 0.0250000000 0.0000000
## Fissidens.dubius 0.0500000000 0.0000000
## Fissidens.exilis 0.0250000000 0.0000000
## Fragaria.vesca 0.1500000000 0.0000000
## Galium.aparine 0.0250000000 0.0000000
## Galium.arvense 0.0250000000 0.0000000
## Galium.saxatile 0.0250000000 0.0000000
## Galium.verum 0.1000000000 0.0000000
## Geum.urbanum 0.0250000000 0.0000000
## Glechoma.hederacea 0.0250000000 0.0000000
## Helicotrichon.spp. 0.0250000000 0.0000000
## Heracleum.sphondylium 0.0750000000 0.0000000
## Hieracium.spp. 0.0250000000 0.0000000
## Holcus.spp. 0.3402555911 0.3194888
## Holcus.lanatus 0.3000000000 0.0000000
## Holcus.mollis 0.1500000000 0.0000000
## Homalothecium.lutescens 0.0500000000 0.0000000
## Hylocomium.splendens 0.1750000000 0.0000000
## Hypericum.perforatum 0.1500000000 0.0000000
## Hypnum.cupressiforme 0.2500000000 0.0000000
## Hypnum.imponens 0.0250000000 0.0000000
## Hypnum.jutlandicum 0.0750000000 0.0000000
## Hypochaeris.radicata 0.0250000000 0.0000000
## Kindbergia.praelonga 0.1500000000 0.0000000
## Lathyrus.pratensis 0.0013888889 0.9722222
## Leontodon.hispidus 0.1250000000 0.0000000
## Leontodon.saxatilis 0.0250000000 0.0000000
## Leucanthemum.vulgare 0.3500000000 0.0000000
## Linum.catharticum 0.1250000000 0.0000000
## Lolium.perenne 0.0401162791 0.4651163
## Lophocolea.semiteres 0.0250000000 0.0000000
## Lotus.corniculatus 0.4500000000 0.0000000
## Luzula.multiflora 0.0250000000 0.0000000
## Lysimachia.maritima 0.0500000000 0.0000000
## Medicago.lupulina 0.1250000000 0.0000000
## Myosotis.arvensis 0.1250000000 0.0000000
## Ononis.repens 0.2000000000 0.0000000
## Oxalis.acetosella 0.0250000000 0.0000000
## Pastinaca.sativa 0.0250000000 0.0000000
## Pentaglottis.sempervirens 0.0250000000 0.0000000
## Pillosella.officinarum 0.3000000000 0.0000000
## Plantago.coronopus 0.1000000000 0.0000000
## Plantago.lanceolata 0.2347826087 0.2173913
## Pleurozium.schreberi 0.1000000000 0.0000000
## Poa.annua 0.0750000000 0.0000000
## Poa.spp. 0.0250000000 0.0000000
## Polytrichum.commune 0.0250000000 0.0000000
## Polytrichum.commune.agg. 0.0250000000 0.0000000
## Polytrichum.formosum 0.0250000000 0.0000000
## Potentilla.reptans 0.0003530599 0.9952925
## Prunella.vulgaris 0.0111111111 0.8888889
## Pseudoscleropidum.purum 0.2000000000 0.0000000
## Pteridium.aquilinum 0.0750000000 0.0000000
## Ranunculus.acris 0.0250000000 0.0000000
## Ranunculus.repens 0.0750000000 0.0000000
## Reseda.lutea 0.0250000000 0.0000000
## Rhinanthus.minor 0.0250000000 0.0000000
## Rhizomnium.punctatum 0.0250000000 0.0000000
## Rhytidadelphus.squarrosus 0.3250000000 0.0000000
## Rhytidadelphus.triquetris 0.0500000000 0.0000000
## Rubus.fruticosus 0.0500000000 0.0000000
## Sanguisorba.minor.spp.minor 0.0500000000 0.0000000
## Saniona.uncinata 0.0500000000 0.0000000
## Sedum.anglicum 0.0250000000 0.0000000
## Senecio.jacobaea 0.0500000000 0.0000000
## Senecio.vulgaris 0.0250000000 0.0000000
## Sonchus.arvensis 0.0250000000 0.0000000
## Stachys.sylvatica 0.0500000000 0.0000000
## Stellaria.apetala 0.0000000000 1.0000000
## Taraxacum.agg. 0.2750000000 0.0000000
## Thuidium.tamariscinum 0.0750000000 0.0000000
## Thymus.polytrichus 0.2000000000 0.0000000
## Trichostomum.crispulum 0.1500000000 0.0000000
## Trifolium.campestre 0.0884615385 0.4102564
## Trifolium.dubium 0.0500000000 0.0000000
## Trifolium.pratense 0.1000000000 0.0000000
## Trifolium.repens 0.0420289855 0.5797101
## Trisetum.flavescens 0.1000000000 0.0000000
## Tussilago.farfara 0.0750000000 0.0000000
## Urtica.diocia 0.1000000000 0.0000000
## Veronica.officinalis 0.0250000000 0.0000000
## Vicia.sativa 0.0250000000 0.0000000
## Viola.riviniana 0.0250000000 0.0000000
## Weissia.controversa 0.0250000000 0.0000000
## Zygodon.stirtonii 0.0250000000 0.0000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 2
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 2 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 2 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 2
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 1
## Festuca.rubra Festuca.rubra.agg.
## 2 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 1
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 2
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 2 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 2 2
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 2
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 2 1
## Trifolium.pratense Trifolium.repens
## 1 2
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.2000000 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 0.0250000 0.0250000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.0500000 0.1500000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.1250000 0.7142857
## Arrhenatherum.elatius Atrichum.undulatum
## 0.2000000 0.0500000
## Avenula.pratensis Bellis.perennis
## 0.0250000 0.3000000
## Betula.pubescens Blackstonia.perfoliata
## 0.0250000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.1000000 0.1500000
## Briza.media Bromus.hordeaceus
## 0.0750000 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.0250000 0.0750000
## Bryum.capillare Bryum.spp.
## 0.0250000 0.0750000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.3100775 0.2000000
## Campanula.rotundifolia Carex.distans
## 0.0250000 0.0500000
## Carex.flacca Carex.panicea
## 0.9838082 0.0250000
## Carlina.vulgaris Centaurea.nigra
## 0.2500000 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.1000000
## Centaurium.pulchellum Cerastium.fontanum
## 0.0250000 0.7692308
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 0.0250000
## Cirsium.arvense Cirsium.palustre
## 0.0750000 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.0500000 0.9858512
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.0500000
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.1250000
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.0750000
## Equisteum.variegatum Erigeron.acer
## 0.0250000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.2750000 0.1750000
## Festuca.rubra Festuca.rubra.agg.
## 0.8341609 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.0750000 0.0250000
## Fissidens.dubius Fissidens.exilis
## 0.0500000 0.0250000
## Fragaria.vesca Galium.aparine
## 0.1500000 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.1000000 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 0.0250000
## Holcus.spp. Holcus.lanatus
## 0.3402556 0.3000000
## Holcus.mollis Homalothecium.lutescens
## 0.1500000 0.0500000
## Hylocomium.splendens Hypericum.perforatum
## 0.1750000 0.1500000
## Hypnum.cupressiforme Hypnum.imponens
## 0.2500000 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 0.0250000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.9722222
## Leontodon.hispidus Leontodon.saxatilis
## 0.1250000 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.3500000 0.1250000
## Lolium.perenne Lophocolea.semiteres
## 0.4651163 0.0250000
## Lotus.corniculatus Luzula.multiflora
## 0.4500000 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.0500000 0.1250000
## Myosotis.arvensis Ononis.repens
## 0.1250000 0.2000000
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.3000000
## Plantago.coronopus Plantago.lanceolata
## 0.1000000 0.2347826
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.0750000
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.9952925 0.8888889
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.2000000 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.0750000
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.3250000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.0500000 0.0500000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.0500000 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.0500000
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.0500000 1.0000000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.2750000 0.0750000
## Thymus.polytrichus Trichostomum.crispulum
## 0.2000000 0.1500000
## Trifolium.campestre Trifolium.dubium
## 0.4102564 0.0500000
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.5797101
## Trisetum.flavescens Tussilago.farfara
## 0.1000000 0.0750000
## Urtica.diocia Veronica.officinalis
## 0.1000000 0.0250000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 0.0250000 0.0250000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1.000 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 1.000 0.070
## Arrhenatherum.elatius Atrichum.undulatum
## 1.000 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 1.000
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 1.000 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.027 1.000
## Carlina.vulgaris Centaurea.nigra
## 1.000 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.166
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 0.017
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.953 1.000
## Festuca.rubra Festuca.rubra.agg.
## 0.086 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 1.000 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 1.000 0.955
## Holcus.mollis Homalothecium.lutescens
## 0.977 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.977 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 1.000 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 0.026
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.924 1.000
## Lolium.perenne Lophocolea.semiteres
## 0.101 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.777 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.898
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.877
## Plantago.coronopus Plantago.lanceolata
## 1.000 1.000
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 0.032 0.098
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1.000 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 1.000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 0.027
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 1.000 1.000
## Trifolium.campestre Trifolium.dubium
## 0.182 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 0.120
## Trisetum.flavescens Tussilago.farfara
## 1.000 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Stellaria apetala has a high indval score of 1, with a low p value of 0.026. Stellaria #apetala is the indicator species for Microcline.
clustMullite <-cut(PlantChemistry1$Mullite, 5, labels=FALSE)
MulliteIndval <- indval(as.matrix(PlantSpecies1), clustMullite, type= "long")
gr <- MulliteIndval$maxcls[MulliteIndval$pval<=0.05]
iv <- MulliteIndval$indcls[MulliteIndval$pval<=0.05]
pv <- MulliteIndval$pval[MulliteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[MulliteIndval$pval<=0.05]
MulliteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
MulliteIndvalsummary <- MulliteIndvalsummary [order
(MulliteIndvalsummary$group, -MulliteIndvalsummary$indval),]
print(MulliteIndvalsummary)
## group indval pvalue freq
## Hieracium.spp. 2 1.0000000 0.027 21
## Daucus.carrota 2 0.9876543 0.028 1
## Leontodon.hispidus 2 0.9382330 0.046 1
## Pseudoscleropidum.purum 2 0.9288824 0.029 3
summary(indval(as.matrix(PlantSpecies1), clustMullite))
## cluster indicator_value probability
## Hieracium.spp. 2 1.0000 0.022
## Daucus.carrota 2 0.9877 0.027
## Leontodon.hispidus 2 0.9382 0.046
## Pseudoscleropidum.purum 2 0.9289 0.035
##
## Sum of probabilities = 129.008
##
## Sum of Indicator Values = 20.11
##
## Sum of Significant Indicator Values = 3.85
##
## Number of Significant Indicators = 4
##
## Significant Indicator Distribution
##
## 2
## 4
print(indval(as.matrix(PlantSpecies1), clustMullite))
## $relfrq
## 1 5
## Agrostis.spp. 0.200 0
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.025 0
## Alopercus.pratensis 0.025 0
## Angelica.sylvestris 0.050 0
## Anthoxanthum.odoratum 0.150 0
## Anthyllis.vulneraria 0.100 1
## Aphanes.arvensis 0.075 0
## Arrhenatherum.elatius 0.200 0
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.025 0
## Bellis.perennis 0.275 1
## Betula.pubescens 0.025 0
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.100 0
## Brachythecium.rutabulum 0.150 0
## Briza.media 0.050 1
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.025 0
## Bryum.c.f..pallescens 0.075 0
## Bryum.capillare 0.025 0
## Bryum.spp. 0.075 0
## Calliergonella.cupsidata 0.375 0
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.025 0
## Carex.distans 0.050 0
## Carex.flacca 0.175 0
## Carex.panicea 0.025 0
## Carlina.vulgaris 0.250 0
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.100 0
## Centaurium.pulchellum 0.025 0
## Cerastium.fontanum 0.150 1
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.025 0
## Cirsium.arvense 0.075 0
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.050 0
## Cynosurus.cristatus 0.075 0
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.025 1
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.125 0
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.075 0
## Equisteum.variegatum 0.025 0
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.275 0
## Festuca.ovina 0.150 1
## Festuca.rubra 0.350 1
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.075 0
## Fissidens.adianthoides 0.025 0
## Fissidens.dubius 0.050 0
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.150 0
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.075 1
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.000 1
## Holcus.spp. 0.500 1
## Holcus.lanatus 0.275 1
## Holcus.mollis 0.150 0
## Homalothecium.lutescens 0.050 0
## Hylocomium.splendens 0.175 0
## Hypericum.perforatum 0.150 0
## Hypnum.cupressiforme 0.250 0
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.025 0
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.075 0
## Leontodon.hispidus 0.100 1
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.325 1
## Linum.catharticum 0.125 0
## Lolium.perenne 0.100 0
## Lophocolea.semiteres 0.025 0
## Lotus.corniculatus 0.425 1
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.050 0
## Medicago.lupulina 0.125 0
## Myosotis.arvensis 0.125 0
## Ononis.repens 0.200 0
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.275 1
## Plantago.coronopus 0.100 0
## Plantago.lanceolata 0.300 1
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.075 0
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.100 0
## Prunella.vulgaris 0.125 0
## Pseudoscleropidum.purum 0.175 1
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.075 0
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.325 0
## Rhytidadelphus.triquetris 0.050 0
## Rubus.fruticosus 0.050 0
## Sanguisorba.minor.spp.minor 0.050 0
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.050 0
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.050 0
## Stellaria.apetala 0.025 0
## Taraxacum.agg. 0.275 0
## Thuidium.tamariscinum 0.075 0
## Thymus.polytrichus 0.200 0
## Trichostomum.crispulum 0.150 0
## Trifolium.campestre 0.150 1
## Trifolium.dubium 0.050 0
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.125 0
## Trisetum.flavescens 0.075 1
## Tussilago.farfara 0.075 0
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.025 0
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.025 0
## Zygodon.stirtonii 0.025 0
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.0000000
## Agrostis.canina 1.00000000 0.0000000
## Alchemilla.mollis 1.00000000 0.0000000
## Alopercus.pratensis 1.00000000 0.0000000
## Angelica.sylvestris 1.00000000 0.0000000
## Anthoxanthum.odoratum 1.00000000 0.0000000
## Anthyllis.vulneraria 0.23353293 0.7664671
## Aphanes.arvensis 1.00000000 0.0000000
## Arrhenatherum.elatius 1.00000000 0.0000000
## Atrichum.undulatum 1.00000000 0.0000000
## Avenula.pratensis 1.00000000 0.0000000
## Bellis.perennis 0.21052632 0.7894737
## Betula.pubescens 1.00000000 0.0000000
## Blackstonia.perfoliata 1.00000000 0.0000000
## Brachythecium.albicans 1.00000000 0.0000000
## Brachythecium.glareosum 1.00000000 0.0000000
## Brachythecium.mildeanum 1.00000000 0.0000000
## Brachythecium.rutabulum 1.00000000 0.0000000
## Briza.media 0.31477516 0.6852248
## Bromus.hordeaceus 1.00000000 0.0000000
## Bryum.c.f..caespiticium 1.00000000 0.0000000
## Bryum.c.f..pallescens 1.00000000 0.0000000
## Bryum.capillare 1.00000000 0.0000000
## Bryum.spp. 1.00000000 0.0000000
## Calliergonella.cupsidata 1.00000000 0.0000000
## Calypogeia.arguta 1.00000000 0.0000000
## Campanula.rotundifolia 1.00000000 0.0000000
## Carex.distans 1.00000000 0.0000000
## Carex.flacca 1.00000000 0.0000000
## Carex.panicea 1.00000000 0.0000000
## Carlina.vulgaris 1.00000000 0.0000000
## Centaurea.nigra 1.00000000 0.0000000
## Centaurium.erythraea 1.00000000 0.0000000
## Centaurium.littorale 1.00000000 0.0000000
## Centaurium.pulchellum 1.00000000 0.0000000
## Cerastium.fontanum 0.23076923 0.7692308
## Chamaenerion.angustifolium 1.00000000 0.0000000
## Cirriphyllum.piliferum 1.00000000 0.0000000
## Cirsium.arvense 1.00000000 0.0000000
## Cirsium.palustre 1.00000000 0.0000000
## Crepis.capillaris 1.00000000 0.0000000
## Cynosurus.cristatus 1.00000000 0.0000000
## Dactylis.glomerata 1.00000000 0.0000000
## Dactylorhiza.fuchsii 1.00000000 0.0000000
## Danthonia.decumbens 1.00000000 0.0000000
## Daucus.carrota 0.01234568 0.9876543
## Dicranella.spp. 1.00000000 0.0000000
## Dicranum.scoparium 1.00000000 0.0000000
## Epilobium.montanum 1.00000000 0.0000000
## Equisetum.arvense 1.00000000 0.0000000
## Equisteum.variegatum 1.00000000 0.0000000
## Erigeron.acer 1.00000000 0.0000000
## Euphrasia.agg 1.00000000 0.0000000
## Festuca.ovina 0.70909091 0.2909091
## Festuca.rubra 0.82378855 0.1762115
## Festuca.rubra.agg. 1.00000000 0.0000000
## Filipendula.ulmaria 1.00000000 0.0000000
## Fissidens.adianthoides 1.00000000 0.0000000
## Fissidens.dubius 1.00000000 0.0000000
## Fissidens.exilis 1.00000000 0.0000000
## Fragaria.vesca 1.00000000 0.0000000
## Galium.aparine 1.00000000 0.0000000
## Galium.arvense 1.00000000 0.0000000
## Galium.saxatile 1.00000000 0.0000000
## Galium.verum 0.81566820 0.1843318
## Geum.urbanum 1.00000000 0.0000000
## Glechoma.hederacea 1.00000000 0.0000000
## Helicotrichon.spp. 1.00000000 0.0000000
## Heracleum.sphondylium 1.00000000 0.0000000
## Hieracium.spp. 0.00000000 1.0000000
## Holcus.spp. 0.87742594 0.1225741
## Holcus.lanatus 0.74921630 0.2507837
## Holcus.mollis 1.00000000 0.0000000
## Homalothecium.lutescens 1.00000000 0.0000000
## Hylocomium.splendens 1.00000000 0.0000000
## Hypericum.perforatum 1.00000000 0.0000000
## Hypnum.cupressiforme 1.00000000 0.0000000
## Hypnum.imponens 1.00000000 0.0000000
## Hypnum.jutlandicum 1.00000000 0.0000000
## Hypochaeris.radicata 1.00000000 0.0000000
## Kindbergia.praelonga 1.00000000 0.0000000
## Lathyrus.pratensis 1.00000000 0.0000000
## Leontodon.hispidus 0.06176701 0.9382330
## Leontodon.saxatilis 1.00000000 0.0000000
## Leucanthemum.vulgare 0.44186047 0.5581395
## Linum.catharticum 1.00000000 0.0000000
## Lolium.perenne 1.00000000 0.0000000
## Lophocolea.semiteres 1.00000000 0.0000000
## Lotus.corniculatus 0.67501693 0.3249831
## Luzula.multiflora 1.00000000 0.0000000
## Lysimachia.maritima 1.00000000 0.0000000
## Medicago.lupulina 1.00000000 0.0000000
## Myosotis.arvensis 1.00000000 0.0000000
## Ononis.repens 1.00000000 0.0000000
## Oxalis.acetosella 1.00000000 0.0000000
## Pastinaca.sativa 1.00000000 0.0000000
## Pentaglottis.sempervirens 1.00000000 0.0000000
## Pillosella.officinarum 0.77369165 0.2263083
## Plantago.coronopus 1.00000000 0.0000000
## Plantago.lanceolata 0.54198473 0.4580153
## Pleurozium.schreberi 1.00000000 0.0000000
## Poa.annua 1.00000000 0.0000000
## Poa.spp. 1.00000000 0.0000000
## Polytrichum.commune 1.00000000 0.0000000
## Polytrichum.commune.agg. 1.00000000 0.0000000
## Polytrichum.formosum 1.00000000 0.0000000
## Potentilla.reptans 1.00000000 0.0000000
## Prunella.vulgaris 1.00000000 0.0000000
## Pseudoscleropidum.purum 0.07111756 0.9288824
## Pteridium.aquilinum 1.00000000 0.0000000
## Ranunculus.acris 1.00000000 0.0000000
## Ranunculus.repens 1.00000000 0.0000000
## Reseda.lutea 1.00000000 0.0000000
## Rhinanthus.minor 1.00000000 0.0000000
## Rhizomnium.punctatum 1.00000000 0.0000000
## Rhytidadelphus.squarrosus 1.00000000 0.0000000
## Rhytidadelphus.triquetris 1.00000000 0.0000000
## Rubus.fruticosus 1.00000000 0.0000000
## Sanguisorba.minor.spp.minor 1.00000000 0.0000000
## Saniona.uncinata 1.00000000 0.0000000
## Sedum.anglicum 1.00000000 0.0000000
## Senecio.jacobaea 1.00000000 0.0000000
## Senecio.vulgaris 1.00000000 0.0000000
## Sonchus.arvensis 1.00000000 0.0000000
## Stachys.sylvatica 1.00000000 0.0000000
## Stellaria.apetala 1.00000000 0.0000000
## Taraxacum.agg. 1.00000000 0.0000000
## Thuidium.tamariscinum 1.00000000 0.0000000
## Thymus.polytrichus 1.00000000 0.0000000
## Trichostomum.crispulum 1.00000000 0.0000000
## Trifolium.campestre 0.58974359 0.4102564
## Trifolium.dubium 1.00000000 0.0000000
## Trifolium.pratense 1.00000000 0.0000000
## Trifolium.repens 1.00000000 0.0000000
## Trisetum.flavescens 0.51020408 0.4897959
## Tussilago.farfara 1.00000000 0.0000000
## Urtica.diocia 1.00000000 0.0000000
## Veronica.officinalis 1.00000000 0.0000000
## Vicia.sativa 1.00000000 0.0000000
## Viola.riviniana 1.00000000 0.0000000
## Weissia.controversa 1.00000000 0.0000000
## Zygodon.stirtonii 1.00000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.200000000 0.0000000
## Agrostis.canina 0.025000000 0.0000000
## Alchemilla.mollis 0.025000000 0.0000000
## Alopercus.pratensis 0.025000000 0.0000000
## Angelica.sylvestris 0.050000000 0.0000000
## Anthoxanthum.odoratum 0.150000000 0.0000000
## Anthyllis.vulneraria 0.023353293 0.7664671
## Aphanes.arvensis 0.075000000 0.0000000
## Arrhenatherum.elatius 0.200000000 0.0000000
## Atrichum.undulatum 0.050000000 0.0000000
## Avenula.pratensis 0.025000000 0.0000000
## Bellis.perennis 0.057894737 0.7894737
## Betula.pubescens 0.025000000 0.0000000
## Blackstonia.perfoliata 0.025000000 0.0000000
## Brachythecium.albicans 0.025000000 0.0000000
## Brachythecium.glareosum 0.025000000 0.0000000
## Brachythecium.mildeanum 0.100000000 0.0000000
## Brachythecium.rutabulum 0.150000000 0.0000000
## Briza.media 0.015738758 0.6852248
## Bromus.hordeaceus 0.025000000 0.0000000
## Bryum.c.f..caespiticium 0.025000000 0.0000000
## Bryum.c.f..pallescens 0.075000000 0.0000000
## Bryum.capillare 0.025000000 0.0000000
## Bryum.spp. 0.075000000 0.0000000
## Calliergonella.cupsidata 0.375000000 0.0000000
## Calypogeia.arguta 0.200000000 0.0000000
## Campanula.rotundifolia 0.025000000 0.0000000
## Carex.distans 0.050000000 0.0000000
## Carex.flacca 0.175000000 0.0000000
## Carex.panicea 0.025000000 0.0000000
## Carlina.vulgaris 0.250000000 0.0000000
## Centaurea.nigra 0.050000000 0.0000000
## Centaurium.erythraea 0.050000000 0.0000000
## Centaurium.littorale 0.100000000 0.0000000
## Centaurium.pulchellum 0.025000000 0.0000000
## Cerastium.fontanum 0.034615385 0.7692308
## Chamaenerion.angustifolium 0.025000000 0.0000000
## Cirriphyllum.piliferum 0.025000000 0.0000000
## Cirsium.arvense 0.075000000 0.0000000
## Cirsium.palustre 0.050000000 0.0000000
## Crepis.capillaris 0.050000000 0.0000000
## Cynosurus.cristatus 0.075000000 0.0000000
## Dactylis.glomerata 0.150000000 0.0000000
## Dactylorhiza.fuchsii 0.050000000 0.0000000
## Danthonia.decumbens 0.025000000 0.0000000
## Daucus.carrota 0.000308642 0.9876543
## Dicranella.spp. 0.025000000 0.0000000
## Dicranum.scoparium 0.125000000 0.0000000
## Epilobium.montanum 0.075000000 0.0000000
## Equisetum.arvense 0.075000000 0.0000000
## Equisteum.variegatum 0.025000000 0.0000000
## Erigeron.acer 0.050000000 0.0000000
## Euphrasia.agg 0.275000000 0.0000000
## Festuca.ovina 0.106363636 0.2909091
## Festuca.rubra 0.288325991 0.1762115
## Festuca.rubra.agg. 0.025000000 0.0000000
## Filipendula.ulmaria 0.075000000 0.0000000
## Fissidens.adianthoides 0.025000000 0.0000000
## Fissidens.dubius 0.050000000 0.0000000
## Fissidens.exilis 0.025000000 0.0000000
## Fragaria.vesca 0.150000000 0.0000000
## Galium.aparine 0.025000000 0.0000000
## Galium.arvense 0.025000000 0.0000000
## Galium.saxatile 0.025000000 0.0000000
## Galium.verum 0.061175115 0.1843318
## Geum.urbanum 0.025000000 0.0000000
## Glechoma.hederacea 0.025000000 0.0000000
## Helicotrichon.spp. 0.025000000 0.0000000
## Heracleum.sphondylium 0.075000000 0.0000000
## Hieracium.spp. 0.000000000 1.0000000
## Holcus.spp. 0.438712972 0.1225741
## Holcus.lanatus 0.206034483 0.2507837
## Holcus.mollis 0.150000000 0.0000000
## Homalothecium.lutescens 0.050000000 0.0000000
## Hylocomium.splendens 0.175000000 0.0000000
## Hypericum.perforatum 0.150000000 0.0000000
## Hypnum.cupressiforme 0.250000000 0.0000000
## Hypnum.imponens 0.025000000 0.0000000
## Hypnum.jutlandicum 0.075000000 0.0000000
## Hypochaeris.radicata 0.025000000 0.0000000
## Kindbergia.praelonga 0.150000000 0.0000000
## Lathyrus.pratensis 0.075000000 0.0000000
## Leontodon.hispidus 0.006176701 0.9382330
## Leontodon.saxatilis 0.025000000 0.0000000
## Leucanthemum.vulgare 0.143604651 0.5581395
## Linum.catharticum 0.125000000 0.0000000
## Lolium.perenne 0.100000000 0.0000000
## Lophocolea.semiteres 0.025000000 0.0000000
## Lotus.corniculatus 0.286882194 0.3249831
## Luzula.multiflora 0.025000000 0.0000000
## Lysimachia.maritima 0.050000000 0.0000000
## Medicago.lupulina 0.125000000 0.0000000
## Myosotis.arvensis 0.125000000 0.0000000
## Ononis.repens 0.200000000 0.0000000
## Oxalis.acetosella 0.025000000 0.0000000
## Pastinaca.sativa 0.025000000 0.0000000
## Pentaglottis.sempervirens 0.025000000 0.0000000
## Pillosella.officinarum 0.212765205 0.2263083
## Plantago.coronopus 0.100000000 0.0000000
## Plantago.lanceolata 0.162595420 0.4580153
## Pleurozium.schreberi 0.100000000 0.0000000
## Poa.annua 0.075000000 0.0000000
## Poa.spp. 0.025000000 0.0000000
## Polytrichum.commune 0.025000000 0.0000000
## Polytrichum.commune.agg. 0.025000000 0.0000000
## Polytrichum.formosum 0.025000000 0.0000000
## Potentilla.reptans 0.100000000 0.0000000
## Prunella.vulgaris 0.125000000 0.0000000
## Pseudoscleropidum.purum 0.012445573 0.9288824
## Pteridium.aquilinum 0.075000000 0.0000000
## Ranunculus.acris 0.025000000 0.0000000
## Ranunculus.repens 0.075000000 0.0000000
## Reseda.lutea 0.025000000 0.0000000
## Rhinanthus.minor 0.025000000 0.0000000
## Rhizomnium.punctatum 0.025000000 0.0000000
## Rhytidadelphus.squarrosus 0.325000000 0.0000000
## Rhytidadelphus.triquetris 0.050000000 0.0000000
## Rubus.fruticosus 0.050000000 0.0000000
## Sanguisorba.minor.spp.minor 0.050000000 0.0000000
## Saniona.uncinata 0.050000000 0.0000000
## Sedum.anglicum 0.025000000 0.0000000
## Senecio.jacobaea 0.050000000 0.0000000
## Senecio.vulgaris 0.025000000 0.0000000
## Sonchus.arvensis 0.025000000 0.0000000
## Stachys.sylvatica 0.050000000 0.0000000
## Stellaria.apetala 0.025000000 0.0000000
## Taraxacum.agg. 0.275000000 0.0000000
## Thuidium.tamariscinum 0.075000000 0.0000000
## Thymus.polytrichus 0.200000000 0.0000000
## Trichostomum.crispulum 0.150000000 0.0000000
## Trifolium.campestre 0.088461538 0.4102564
## Trifolium.dubium 0.050000000 0.0000000
## Trifolium.pratense 0.100000000 0.0000000
## Trifolium.repens 0.125000000 0.0000000
## Trisetum.flavescens 0.038265306 0.4897959
## Tussilago.farfara 0.075000000 0.0000000
## Urtica.diocia 0.100000000 0.0000000
## Veronica.officinalis 0.025000000 0.0000000
## Vicia.sativa 0.025000000 0.0000000
## Viola.riviniana 0.025000000 0.0000000
## Weissia.controversa 0.025000000 0.0000000
## Zygodon.stirtonii 0.025000000 0.0000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 2 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 2
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 2 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 2
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 2
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 2 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 2
## Holcus.spp. Holcus.lanatus
## 1 2
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 2 1
## Leucanthemum.vulgare Linum.catharticum
## 2 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 2 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 2
## Plantago.coronopus Plantago.lanceolata
## 1 2
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 2 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 2 1
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 2 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.2000000 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 0.0250000 0.0250000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.0500000 0.1500000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.7664671 0.0750000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.2000000 0.0500000
## Avenula.pratensis Bellis.perennis
## 0.0250000 0.7894737
## Betula.pubescens Blackstonia.perfoliata
## 0.0250000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.1000000 0.1500000
## Briza.media Bromus.hordeaceus
## 0.6852248 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.0250000 0.0750000
## Bryum.capillare Bryum.spp.
## 0.0250000 0.0750000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.3750000 0.2000000
## Campanula.rotundifolia Carex.distans
## 0.0250000 0.0500000
## Carex.flacca Carex.panicea
## 0.1750000 0.0250000
## Carlina.vulgaris Centaurea.nigra
## 0.2500000 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.1000000
## Centaurium.pulchellum Cerastium.fontanum
## 0.0250000 0.7692308
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 0.0250000
## Cirsium.arvense Cirsium.palustre
## 0.0750000 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.0500000 0.0750000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.9876543
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.1250000
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.0750000
## Equisteum.variegatum Erigeron.acer
## 0.0250000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.2750000 0.2909091
## Festuca.rubra Festuca.rubra.agg.
## 0.2883260 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.0750000 0.0250000
## Fissidens.dubius Fissidens.exilis
## 0.0500000 0.0250000
## Fragaria.vesca Galium.aparine
## 0.1500000 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.1843318 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 1.0000000
## Holcus.spp. Holcus.lanatus
## 0.4387130 0.2507837
## Holcus.mollis Homalothecium.lutescens
## 0.1500000 0.0500000
## Hylocomium.splendens Hypericum.perforatum
## 0.1750000 0.1500000
## Hypnum.cupressiforme Hypnum.imponens
## 0.2500000 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 0.0250000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.0750000
## Leontodon.hispidus Leontodon.saxatilis
## 0.9382330 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.5581395 0.1250000
## Lolium.perenne Lophocolea.semiteres
## 0.1000000 0.0250000
## Lotus.corniculatus Luzula.multiflora
## 0.3249831 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.0500000 0.1250000
## Myosotis.arvensis Ononis.repens
## 0.1250000 0.2000000
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.2263083
## Plantago.coronopus Plantago.lanceolata
## 0.1000000 0.4580153
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.0750000
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.1000000 0.1250000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.9288824 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.0750000
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.3250000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.0500000 0.0500000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.0500000 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.0500000
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.0500000 0.0250000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.2750000 0.0750000
## Thymus.polytrichus Trichostomum.crispulum
## 0.2000000 0.1500000
## Trifolium.campestre Trifolium.dubium
## 0.4102564 0.0500000
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.1250000
## Trisetum.flavescens Tussilago.farfara
## 0.4897959 0.0750000
## Urtica.diocia Veronica.officinalis
## 0.1000000 0.0250000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 0.0250000 0.0250000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1.000 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.108 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 1.000 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.147
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 0.078 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.912 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.978 1.000
## Carlina.vulgaris Centaurea.nigra
## 1.000 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.168
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 0.016
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.951 0.163
## Festuca.rubra Festuca.rubra.agg.
## 1.000 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 0.096 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 0.027
## Holcus.spp. Holcus.lanatus
## 0.844 0.972
## Holcus.mollis Homalothecium.lutescens
## 0.971 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.976 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 1.000 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 0.045 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.200 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 1.000 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.905
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.982
## Plantago.coronopus Plantago.lanceolata
## 1.000 0.242
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.015 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 1.000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 1.000 1.000
## Trifolium.campestre Trifolium.dubium
## 0.140 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 1.000
## Trisetum.flavescens Tussilago.farfara
## 0.060 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Hieracium spp. has a high indval score of 1, with a low p value of 0.025. Hieracium spp. #is the indicator species for Mullite.
clustNitratine <-cut(PlantChemistry1$Nitratine, 5, labels=FALSE)
NitratineIndval <- indval(as.matrix(PlantSpecies1), clustNitratine, type= "long")
gr <- NitratineIndval$maxcls[NitratineIndval$pval<=0.05]
iv <- NitratineIndval$indcls[NitratineIndval$pval<=0.05]
pv <- NitratineIndval$pval[NitratineIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[NitratineIndval$pval<=0.05]
NitratineIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
NitratineIndvalsummary <- NitratineIndvalsummary [order
(NitratineIndvalsummary$group, -NitratineIndvalsummary$indval),]
print(NitratineIndvalsummary)
## group indval pvalue freq
## Holcus.spp. 2 0.6593943 0.004 12
## Pillosella.officinarum 2 0.5649271 0.009 4
## Festuca.rubra 2 0.4618213 0.034 1
summary(indval(as.matrix(PlantSpecies1), clustNitratine))
## cluster indicator_value probability
## Holcus.spp. 2 0.6594 0.006
## Pillosella.officinarum 2 0.5649 0.011
## Festuca.rubra 2 0.4618 0.045
##
## Sum of probabilities = 107.644
##
## Sum of Indicator Values = 14.38
##
## Sum of Significant Indicator Values = 1.69
##
## Number of Significant Indicators = 3
##
## Significant Indicator Distribution
##
## 2
## 3
print(indval(as.matrix(PlantSpecies1), clustNitratine))
## $relfrq
## 1 5
## Agrostis.spp. 0.24242424 0.000
## Agrostis.canina 0.03030303 0.000
## Alchemilla.mollis 0.03030303 0.000
## Alopercus.pratensis 0.03030303 0.000
## Angelica.sylvestris 0.06060606 0.000
## Anthoxanthum.odoratum 0.18181818 0.000
## Anthyllis.vulneraria 0.15151515 0.000
## Aphanes.arvensis 0.09090909 0.000
## Arrhenatherum.elatius 0.21212121 0.125
## Atrichum.undulatum 0.06060606 0.000
## Avenula.pratensis 0.03030303 0.000
## Bellis.perennis 0.30303030 0.250
## Betula.pubescens 0.03030303 0.000
## Blackstonia.perfoliata 0.03030303 0.000
## Brachythecium.albicans 0.00000000 0.125
## Brachythecium.glareosum 0.03030303 0.000
## Brachythecium.mildeanum 0.12121212 0.000
## Brachythecium.rutabulum 0.15151515 0.125
## Briza.media 0.06060606 0.125
## Bromus.hordeaceus 0.03030303 0.000
## Bryum.c.f..caespiticium 0.03030303 0.000
## Bryum.c.f..pallescens 0.09090909 0.000
## Bryum.capillare 0.03030303 0.000
## Bryum.spp. 0.09090909 0.000
## Calliergonella.cupsidata 0.39393939 0.250
## Calypogeia.arguta 0.24242424 0.000
## Campanula.rotundifolia 0.03030303 0.000
## Carex.distans 0.03030303 0.125
## Carex.flacca 0.18181818 0.125
## Carex.panicea 0.03030303 0.000
## Carlina.vulgaris 0.21212121 0.375
## Centaurea.nigra 0.03030303 0.125
## Centaurium.erythraea 0.06060606 0.000
## Centaurium.littorale 0.09090909 0.125
## Centaurium.pulchellum 0.03030303 0.000
## Cerastium.fontanum 0.18181818 0.125
## Chamaenerion.angustifolium 0.03030303 0.000
## Cirriphyllum.piliferum 0.03030303 0.000
## Cirsium.arvense 0.09090909 0.000
## Cirsium.palustre 0.06060606 0.000
## Crepis.capillaris 0.06060606 0.000
## Cynosurus.cristatus 0.09090909 0.000
## Dactylis.glomerata 0.18181818 0.000
## Dactylorhiza.fuchsii 0.06060606 0.000
## Danthonia.decumbens 0.03030303 0.000
## Daucus.carrota 0.03030303 0.125
## Dicranella.spp. 0.03030303 0.000
## Dicranum.scoparium 0.15151515 0.000
## Epilobium.montanum 0.09090909 0.000
## Equisetum.arvense 0.09090909 0.000
## Equisteum.variegatum 0.03030303 0.000
## Erigeron.acer 0.06060606 0.000
## Euphrasia.agg 0.27272727 0.250
## Festuca.ovina 0.15151515 0.250
## Festuca.rubra 0.30303030 0.625
## Festuca.rubra.agg. 0.03030303 0.000
## Filipendula.ulmaria 0.09090909 0.000
## Fissidens.adianthoides 0.03030303 0.000
## Fissidens.dubius 0.06060606 0.000
## Fissidens.exilis 0.03030303 0.000
## Fragaria.vesca 0.18181818 0.000
## Galium.aparine 0.03030303 0.000
## Galium.arvense 0.03030303 0.000
## Galium.saxatile 0.00000000 0.125
## Galium.verum 0.06060606 0.250
## Geum.urbanum 0.03030303 0.000
## Glechoma.hederacea 0.03030303 0.000
## Helicotrichon.spp. 0.03030303 0.000
## Heracleum.sphondylium 0.09090909 0.000
## Hieracium.spp. 0.03030303 0.000
## Holcus.spp. 0.42424242 0.875
## Holcus.lanatus 0.24242424 0.500
## Holcus.mollis 0.15151515 0.125
## Homalothecium.lutescens 0.03030303 0.125
## Hylocomium.splendens 0.21212121 0.000
## Hypericum.perforatum 0.18181818 0.000
## Hypnum.cupressiforme 0.24242424 0.250
## Hypnum.imponens 0.03030303 0.000
## Hypnum.jutlandicum 0.09090909 0.000
## Hypochaeris.radicata 0.00000000 0.125
## Kindbergia.praelonga 0.18181818 0.000
## Lathyrus.pratensis 0.09090909 0.000
## Leontodon.hispidus 0.12121212 0.125
## Leontodon.saxatilis 0.03030303 0.000
## Leucanthemum.vulgare 0.30303030 0.500
## Linum.catharticum 0.12121212 0.125
## Lolium.perenne 0.09090909 0.125
## Lophocolea.semiteres 0.03030303 0.000
## Lotus.corniculatus 0.39393939 0.625
## Luzula.multiflora 0.03030303 0.000
## Lysimachia.maritima 0.03030303 0.125
## Medicago.lupulina 0.09090909 0.250
## Myosotis.arvensis 0.09090909 0.250
## Ononis.repens 0.18181818 0.250
## Oxalis.acetosella 0.03030303 0.000
## Pastinaca.sativa 0.03030303 0.000
## Pentaglottis.sempervirens 0.03030303 0.000
## Pillosella.officinarum 0.21212121 0.625
## Plantago.coronopus 0.06060606 0.250
## Plantago.lanceolata 0.36363636 0.125
## Pleurozium.schreberi 0.12121212 0.000
## Poa.annua 0.06060606 0.125
## Poa.spp. 0.03030303 0.000
## Polytrichum.commune 0.03030303 0.000
## Polytrichum.commune.agg. 0.03030303 0.000
## Polytrichum.formosum 0.03030303 0.000
## Potentilla.reptans 0.12121212 0.000
## Prunella.vulgaris 0.15151515 0.000
## Pseudoscleropidum.purum 0.21212121 0.125
## Pteridium.aquilinum 0.09090909 0.000
## Ranunculus.acris 0.03030303 0.000
## Ranunculus.repens 0.06060606 0.125
## Reseda.lutea 0.03030303 0.000
## Rhinanthus.minor 0.03030303 0.000
## Rhizomnium.punctatum 0.03030303 0.000
## Rhytidadelphus.squarrosus 0.36363636 0.125
## Rhytidadelphus.triquetris 0.06060606 0.000
## Rubus.fruticosus 0.06060606 0.000
## Sanguisorba.minor.spp.minor 0.03030303 0.125
## Saniona.uncinata 0.06060606 0.000
## Sedum.anglicum 0.03030303 0.000
## Senecio.jacobaea 0.06060606 0.000
## Senecio.vulgaris 0.03030303 0.000
## Sonchus.arvensis 0.03030303 0.000
## Stachys.sylvatica 0.06060606 0.000
## Stellaria.apetala 0.03030303 0.000
## Taraxacum.agg. 0.24242424 0.375
## Thuidium.tamariscinum 0.09090909 0.000
## Thymus.polytrichus 0.18181818 0.250
## Trichostomum.crispulum 0.12121212 0.250
## Trifolium.campestre 0.15151515 0.250
## Trifolium.dubium 0.03030303 0.125
## Trifolium.pratense 0.09090909 0.125
## Trifolium.repens 0.12121212 0.125
## Trisetum.flavescens 0.12121212 0.000
## Tussilago.farfara 0.06060606 0.125
## Urtica.diocia 0.09090909 0.125
## Veronica.officinalis 0.03030303 0.000
## Vicia.sativa 0.03030303 0.000
## Viola.riviniana 0.03030303 0.000
## Weissia.controversa 0.03030303 0.000
## Zygodon.stirtonii 0.03030303 0.000
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.00000000
## Agrostis.canina 1.00000000 0.00000000
## Alchemilla.mollis 1.00000000 0.00000000
## Alopercus.pratensis 1.00000000 0.00000000
## Angelica.sylvestris 1.00000000 0.00000000
## Anthoxanthum.odoratum 1.00000000 0.00000000
## Anthyllis.vulneraria 1.00000000 0.00000000
## Aphanes.arvensis 1.00000000 0.00000000
## Arrhenatherum.elatius 0.74732006 0.25267994
## Atrichum.undulatum 1.00000000 0.00000000
## Avenula.pratensis 1.00000000 0.00000000
## Bellis.perennis 0.43045685 0.56954315
## Betula.pubescens 1.00000000 0.00000000
## Blackstonia.perfoliata 1.00000000 0.00000000
## Brachythecium.albicans 0.00000000 1.00000000
## Brachythecium.glareosum 1.00000000 0.00000000
## Brachythecium.mildeanum 1.00000000 0.00000000
## Brachythecium.rutabulum 0.28776978 0.71223022
## Briza.media 0.79726962 0.20273038
## Bromus.hordeaceus 1.00000000 0.00000000
## Bryum.c.f..caespiticium 1.00000000 0.00000000
## Bryum.c.f..pallescens 1.00000000 0.00000000
## Bryum.capillare 1.00000000 0.00000000
## Bryum.spp. 1.00000000 0.00000000
## Calliergonella.cupsidata 0.56822430 0.43177570
## Calypogeia.arguta 1.00000000 0.00000000
## Campanula.rotundifolia 1.00000000 0.00000000
## Carex.distans 0.35404255 0.64595745
## Carex.flacca 0.94061188 0.05938812
## Carex.panicea 1.00000000 0.00000000
## Carlina.vulgaris 0.41357027 0.58642973
## Centaurea.nigra 0.32653061 0.67346939
## Centaurium.erythraea 1.00000000 0.00000000
## Centaurium.littorale 0.30379747 0.69620253
## Centaurium.pulchellum 1.00000000 0.00000000
## Cerastium.fontanum 0.57142857 0.42857143
## Chamaenerion.angustifolium 1.00000000 0.00000000
## Cirriphyllum.piliferum 1.00000000 0.00000000
## Cirsium.arvense 1.00000000 0.00000000
## Cirsium.palustre 1.00000000 0.00000000
## Crepis.capillaris 1.00000000 0.00000000
## Cynosurus.cristatus 1.00000000 0.00000000
## Dactylis.glomerata 1.00000000 0.00000000
## Dactylorhiza.fuchsii 1.00000000 0.00000000
## Danthonia.decumbens 1.00000000 0.00000000
## Daucus.carrota 0.32653061 0.67346939
## Dicranella.spp. 1.00000000 0.00000000
## Dicranum.scoparium 1.00000000 0.00000000
## Epilobium.montanum 1.00000000 0.00000000
## Equisetum.arvense 1.00000000 0.00000000
## Equisteum.variegatum 1.00000000 0.00000000
## Erigeron.acer 1.00000000 0.00000000
## Euphrasia.agg 0.35499208 0.64500792
## Festuca.ovina 0.45739910 0.54260090
## Festuca.rubra 0.26108591 0.73891409
## Festuca.rubra.agg. 1.00000000 0.00000000
## Filipendula.ulmaria 1.00000000 0.00000000
## Fissidens.adianthoides 1.00000000 0.00000000
## Fissidens.dubius 1.00000000 0.00000000
## Fissidens.exilis 1.00000000 0.00000000
## Fragaria.vesca 1.00000000 0.00000000
## Galium.aparine 1.00000000 0.00000000
## Galium.arvense 1.00000000 0.00000000
## Galium.saxatile 0.00000000 1.00000000
## Galium.verum 0.19512195 0.80487805
## Geum.urbanum 1.00000000 0.00000000
## Glechoma.hederacea 1.00000000 0.00000000
## Helicotrichon.spp. 1.00000000 0.00000000
## Heracleum.sphondylium 1.00000000 0.00000000
## Hieracium.spp. 1.00000000 0.00000000
## Holcus.spp. 0.24640657 0.75359343
## Holcus.lanatus 0.52747253 0.47252747
## Holcus.mollis 0.84270734 0.15729266
## Homalothecium.lutescens 0.01492537 0.98507463
## Hylocomium.splendens 1.00000000 0.00000000
## Hypericum.perforatum 1.00000000 0.00000000
## Hypnum.cupressiforme 0.31044776 0.68955224
## Hypnum.imponens 1.00000000 0.00000000
## Hypnum.jutlandicum 1.00000000 0.00000000
## Hypochaeris.radicata 0.00000000 1.00000000
## Kindbergia.praelonga 1.00000000 0.00000000
## Lathyrus.pratensis 1.00000000 0.00000000
## Leontodon.hispidus 0.58490566 0.41509434
## Leontodon.saxatilis 1.00000000 0.00000000
## Leucanthemum.vulgare 0.47058824 0.52941176
## Linum.catharticum 0.82162162 0.17837838
## Lolium.perenne 0.81185861 0.18814139
## Lophocolea.semiteres 1.00000000 0.00000000
## Lotus.corniculatus 0.21550988 0.78449012
## Luzula.multiflora 1.00000000 0.00000000
## Lysimachia.maritima 0.90651558 0.09348442
## Medicago.lupulina 0.74615385 0.25384615
## Myosotis.arvensis 0.23762376 0.76237624
## Ononis.repens 0.95305832 0.04694168
## Oxalis.acetosella 1.00000000 0.00000000
## Pastinaca.sativa 1.00000000 0.00000000
## Pentaglottis.sempervirens 1.00000000 0.00000000
## Pillosella.officinarum 0.09611671 0.90388329
## Plantago.coronopus 0.28776978 0.71223022
## Plantago.lanceolata 0.60240964 0.39759036
## Pleurozium.schreberi 1.00000000 0.00000000
## Poa.annua 0.33638026 0.66361974
## Poa.spp. 1.00000000 0.00000000
## Polytrichum.commune 1.00000000 0.00000000
## Polytrichum.commune.agg. 1.00000000 0.00000000
## Polytrichum.formosum 1.00000000 0.00000000
## Potentilla.reptans 1.00000000 0.00000000
## Prunella.vulgaris 1.00000000 0.00000000
## Pseudoscleropidum.purum 0.83361345 0.16638655
## Pteridium.aquilinum 1.00000000 0.00000000
## Ranunculus.acris 1.00000000 0.00000000
## Ranunculus.repens 0.87159533 0.12840467
## Reseda.lutea 1.00000000 0.00000000
## Rhinanthus.minor 1.00000000 0.00000000
## Rhizomnium.punctatum 1.00000000 0.00000000
## Rhytidadelphus.squarrosus 0.65979381 0.34020619
## Rhytidadelphus.triquetris 1.00000000 0.00000000
## Rubus.fruticosus 1.00000000 0.00000000
## Sanguisorba.minor.spp.minor 0.06655574 0.93344426
## Saniona.uncinata 1.00000000 0.00000000
## Sedum.anglicum 1.00000000 0.00000000
## Senecio.jacobaea 1.00000000 0.00000000
## Senecio.vulgaris 1.00000000 0.00000000
## Sonchus.arvensis 1.00000000 0.00000000
## Stachys.sylvatica 1.00000000 0.00000000
## Stellaria.apetala 1.00000000 0.00000000
## Taraxacum.agg. 0.47949527 0.52050473
## Thuidium.tamariscinum 1.00000000 0.00000000
## Thymus.polytrichus 0.54614747 0.45385253
## Trichostomum.crispulum 0.22269807 0.77730193
## Trifolium.campestre 0.13157895 0.86842105
## Trifolium.dubium 0.24971098 0.75028902
## Trifolium.pratense 0.76595745 0.23404255
## Trifolium.repens 0.38011050 0.61988950
## Trisetum.flavescens 1.00000000 0.00000000
## Tussilago.farfara 0.60557769 0.39442231
## Urtica.diocia 0.78904110 0.21095890
## Veronica.officinalis 1.00000000 0.00000000
## Vicia.sativa 1.00000000 0.00000000
## Viola.riviniana 1.00000000 0.00000000
## Weissia.controversa 1.00000000 0.00000000
## Zygodon.stirtonii 1.00000000 0.00000000
##
## $indval
## 1 5
## Agrostis.spp. 0.242424242 0.000000000
## Agrostis.canina 0.030303030 0.000000000
## Alchemilla.mollis 0.030303030 0.000000000
## Alopercus.pratensis 0.030303030 0.000000000
## Angelica.sylvestris 0.060606061 0.000000000
## Anthoxanthum.odoratum 0.181818182 0.000000000
## Anthyllis.vulneraria 0.151515152 0.000000000
## Aphanes.arvensis 0.090909091 0.000000000
## Arrhenatherum.elatius 0.158522437 0.031584992
## Atrichum.undulatum 0.060606061 0.000000000
## Avenula.pratensis 0.030303030 0.000000000
## Bellis.perennis 0.130441471 0.142385787
## Betula.pubescens 0.030303030 0.000000000
## Blackstonia.perfoliata 0.030303030 0.000000000
## Brachythecium.albicans 0.000000000 0.125000000
## Brachythecium.glareosum 0.030303030 0.000000000
## Brachythecium.mildeanum 0.121212121 0.000000000
## Brachythecium.rutabulum 0.043601482 0.089028777
## Briza.media 0.048319371 0.025341297
## Bromus.hordeaceus 0.030303030 0.000000000
## Bryum.c.f..caespiticium 0.030303030 0.000000000
## Bryum.c.f..pallescens 0.090909091 0.000000000
## Bryum.capillare 0.030303030 0.000000000
## Bryum.spp. 0.090909091 0.000000000
## Calliergonella.cupsidata 0.223845936 0.107943925
## Calypogeia.arguta 0.242424242 0.000000000
## Campanula.rotundifolia 0.030303030 0.000000000
## Carex.distans 0.010728562 0.080744681
## Carex.flacca 0.171020341 0.007423515
## Carex.panicea 0.030303030 0.000000000
## Carlina.vulgaris 0.087727028 0.219911147
## Centaurea.nigra 0.009894867 0.084183673
## Centaurium.erythraea 0.060606061 0.000000000
## Centaurium.littorale 0.027617952 0.087025316
## Centaurium.pulchellum 0.030303030 0.000000000
## Cerastium.fontanum 0.103896104 0.053571429
## Chamaenerion.angustifolium 0.030303030 0.000000000
## Cirriphyllum.piliferum 0.030303030 0.000000000
## Cirsium.arvense 0.090909091 0.000000000
## Cirsium.palustre 0.060606061 0.000000000
## Crepis.capillaris 0.060606061 0.000000000
## Cynosurus.cristatus 0.090909091 0.000000000
## Dactylis.glomerata 0.181818182 0.000000000
## Dactylorhiza.fuchsii 0.060606061 0.000000000
## Danthonia.decumbens 0.030303030 0.000000000
## Daucus.carrota 0.009894867 0.084183673
## Dicranella.spp. 0.030303030 0.000000000
## Dicranum.scoparium 0.151515152 0.000000000
## Epilobium.montanum 0.090909091 0.000000000
## Equisetum.arvense 0.090909091 0.000000000
## Equisteum.variegatum 0.030303030 0.000000000
## Erigeron.acer 0.060606061 0.000000000
## Euphrasia.agg 0.096816021 0.161251981
## Festuca.ovina 0.069302894 0.135650224
## Festuca.rubra 0.079116941 0.461821308
## Festuca.rubra.agg. 0.030303030 0.000000000
## Filipendula.ulmaria 0.090909091 0.000000000
## Fissidens.adianthoides 0.030303030 0.000000000
## Fissidens.dubius 0.060606061 0.000000000
## Fissidens.exilis 0.030303030 0.000000000
## Fragaria.vesca 0.181818182 0.000000000
## Galium.aparine 0.030303030 0.000000000
## Galium.arvense 0.030303030 0.000000000
## Galium.saxatile 0.000000000 0.125000000
## Galium.verum 0.011825573 0.201219512
## Geum.urbanum 0.030303030 0.000000000
## Glechoma.hederacea 0.030303030 0.000000000
## Helicotrichon.spp. 0.030303030 0.000000000
## Heracleum.sphondylium 0.090909091 0.000000000
## Hieracium.spp. 0.030303030 0.000000000
## Holcus.spp. 0.104536121 0.659394251
## Holcus.lanatus 0.127872128 0.236263736
## Holcus.mollis 0.127682930 0.019661582
## Homalothecium.lutescens 0.000452284 0.123134328
## Hylocomium.splendens 0.212121212 0.000000000
## Hypericum.perforatum 0.181818182 0.000000000
## Hypnum.cupressiforme 0.075260063 0.172388060
## Hypnum.imponens 0.030303030 0.000000000
## Hypnum.jutlandicum 0.090909091 0.000000000
## Hypochaeris.radicata 0.000000000 0.125000000
## Kindbergia.praelonga 0.181818182 0.000000000
## Lathyrus.pratensis 0.090909091 0.000000000
## Leontodon.hispidus 0.070897656 0.051886792
## Leontodon.saxatilis 0.030303030 0.000000000
## Leucanthemum.vulgare 0.142602496 0.264705882
## Linum.catharticum 0.099590500 0.022297297
## Lolium.perenne 0.073805328 0.023517674
## Lophocolea.semiteres 0.030303030 0.000000000
## Lotus.corniculatus 0.084897830 0.490306328
## Luzula.multiflora 0.030303030 0.000000000
## Lysimachia.maritima 0.027470169 0.011685552
## Medicago.lupulina 0.067832168 0.063461538
## Myosotis.arvensis 0.021602160 0.190594059
## Ononis.repens 0.173283331 0.011735420
## Oxalis.acetosella 0.030303030 0.000000000
## Pastinaca.sativa 0.030303030 0.000000000
## Pentaglottis.sempervirens 0.030303030 0.000000000
## Pillosella.officinarum 0.020388394 0.564927054
## Plantago.coronopus 0.017440593 0.178057554
## Plantago.lanceolata 0.219058050 0.049698795
## Pleurozium.schreberi 0.121212121 0.000000000
## Poa.annua 0.020386682 0.082952468
## Poa.spp. 0.030303030 0.000000000
## Polytrichum.commune 0.030303030 0.000000000
## Polytrichum.commune.agg. 0.030303030 0.000000000
## Polytrichum.formosum 0.030303030 0.000000000
## Potentilla.reptans 0.121212121 0.000000000
## Prunella.vulgaris 0.151515152 0.000000000
## Pseudoscleropidum.purum 0.176827094 0.020798319
## Pteridium.aquilinum 0.090909091 0.000000000
## Ranunculus.acris 0.030303030 0.000000000
## Ranunculus.repens 0.052823959 0.016050584
## Reseda.lutea 0.030303030 0.000000000
## Rhinanthus.minor 0.030303030 0.000000000
## Rhizomnium.punctatum 0.030303030 0.000000000
## Rhytidadelphus.squarrosus 0.239925023 0.042525773
## Rhytidadelphus.triquetris 0.060606061 0.000000000
## Rubus.fruticosus 0.060606061 0.000000000
## Sanguisorba.minor.spp.minor 0.002016841 0.116680532
## Saniona.uncinata 0.060606061 0.000000000
## Sedum.anglicum 0.030303030 0.000000000
## Senecio.jacobaea 0.060606061 0.000000000
## Senecio.vulgaris 0.030303030 0.000000000
## Sonchus.arvensis 0.030303030 0.000000000
## Stachys.sylvatica 0.060606061 0.000000000
## Stellaria.apetala 0.030303030 0.000000000
## Taraxacum.agg. 0.116241277 0.195189274
## Thuidium.tamariscinum 0.090909091 0.000000000
## Thymus.polytrichus 0.099299541 0.113463132
## Trichostomum.crispulum 0.026993706 0.194325482
## Trifolium.campestre 0.019936204 0.217105263
## Trifolium.dubium 0.007566999 0.093786127
## Trifolium.pratense 0.069632495 0.029255319
## Trifolium.repens 0.046074000 0.077486188
## Trisetum.flavescens 0.121212121 0.000000000
## Tussilago.farfara 0.036701678 0.049302789
## Urtica.diocia 0.071731009 0.026369863
## Veronica.officinalis 0.030303030 0.000000000
## Vicia.sativa 0.030303030 0.000000000
## Viola.riviniana 0.030303030 0.000000000
## Weissia.controversa 0.030303030 0.000000000
## Zygodon.stirtonii 0.030303030 0.000000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 2
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 2 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 2
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 2
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 2 2
## Centaurium.erythraea Centaurium.littorale
## 1 2
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 2
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 2 2
## Festuca.rubra Festuca.rubra.agg.
## 2 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 2
## Galium.verum Geum.urbanum
## 2 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 2 2
## Holcus.mollis Homalothecium.lutescens
## 1 2
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 2 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 2
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 2 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 2 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 2 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 2
## Plantago.coronopus Plantago.lanceolata
## 2 1
## Pleurozium.schreberi Poa.annua
## 1 2
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 2 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 2 1
## Thymus.polytrichus Trichostomum.crispulum
## 2 2
## Trifolium.campestre Trifolium.dubium
## 2 2
## Trifolium.pratense Trifolium.repens
## 1 2
## Trisetum.flavescens Tussilago.farfara
## 1 2
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.24242424 0.03030303
## Alchemilla.mollis Alopercus.pratensis
## 0.03030303 0.03030303
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.06060606 0.18181818
## Anthyllis.vulneraria Aphanes.arvensis
## 0.15151515 0.09090909
## Arrhenatherum.elatius Atrichum.undulatum
## 0.15852244 0.06060606
## Avenula.pratensis Bellis.perennis
## 0.03030303 0.14238579
## Betula.pubescens Blackstonia.perfoliata
## 0.03030303 0.03030303
## Brachythecium.albicans Brachythecium.glareosum
## 0.12500000 0.03030303
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.12121212 0.08902878
## Briza.media Bromus.hordeaceus
## 0.04831937 0.03030303
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.03030303 0.09090909
## Bryum.capillare Bryum.spp.
## 0.03030303 0.09090909
## Calliergonella.cupsidata Calypogeia.arguta
## 0.22384594 0.24242424
## Campanula.rotundifolia Carex.distans
## 0.03030303 0.08074468
## Carex.flacca Carex.panicea
## 0.17102034 0.03030303
## Carlina.vulgaris Centaurea.nigra
## 0.21991115 0.08418367
## Centaurium.erythraea Centaurium.littorale
## 0.06060606 0.08702532
## Centaurium.pulchellum Cerastium.fontanum
## 0.03030303 0.10389610
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.03030303 0.03030303
## Cirsium.arvense Cirsium.palustre
## 0.09090909 0.06060606
## Crepis.capillaris Cynosurus.cristatus
## 0.06060606 0.09090909
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.18181818 0.06060606
## Danthonia.decumbens Daucus.carrota
## 0.03030303 0.08418367
## Dicranella.spp. Dicranum.scoparium
## 0.03030303 0.15151515
## Epilobium.montanum Equisetum.arvense
## 0.09090909 0.09090909
## Equisteum.variegatum Erigeron.acer
## 0.03030303 0.06060606
## Euphrasia.agg Festuca.ovina
## 0.16125198 0.13565022
## Festuca.rubra Festuca.rubra.agg.
## 0.46182131 0.03030303
## Filipendula.ulmaria Fissidens.adianthoides
## 0.09090909 0.03030303
## Fissidens.dubius Fissidens.exilis
## 0.06060606 0.03030303
## Fragaria.vesca Galium.aparine
## 0.18181818 0.03030303
## Galium.arvense Galium.saxatile
## 0.03030303 0.12500000
## Galium.verum Geum.urbanum
## 0.20121951 0.03030303
## Glechoma.hederacea Helicotrichon.spp.
## 0.03030303 0.03030303
## Heracleum.sphondylium Hieracium.spp.
## 0.09090909 0.03030303
## Holcus.spp. Holcus.lanatus
## 0.65939425 0.23626374
## Holcus.mollis Homalothecium.lutescens
## 0.12768293 0.12313433
## Hylocomium.splendens Hypericum.perforatum
## 0.21212121 0.18181818
## Hypnum.cupressiforme Hypnum.imponens
## 0.17238806 0.03030303
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.09090909 0.12500000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.18181818 0.09090909
## Leontodon.hispidus Leontodon.saxatilis
## 0.07089766 0.03030303
## Leucanthemum.vulgare Linum.catharticum
## 0.26470588 0.09959050
## Lolium.perenne Lophocolea.semiteres
## 0.07380533 0.03030303
## Lotus.corniculatus Luzula.multiflora
## 0.49030633 0.03030303
## Lysimachia.maritima Medicago.lupulina
## 0.02747017 0.06783217
## Myosotis.arvensis Ononis.repens
## 0.19059406 0.17328333
## Oxalis.acetosella Pastinaca.sativa
## 0.03030303 0.03030303
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.03030303 0.56492705
## Plantago.coronopus Plantago.lanceolata
## 0.17805755 0.21905805
## Pleurozium.schreberi Poa.annua
## 0.12121212 0.08295247
## Poa.spp. Polytrichum.commune
## 0.03030303 0.03030303
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.03030303 0.03030303
## Potentilla.reptans Prunella.vulgaris
## 0.12121212 0.15151515
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.17682709 0.09090909
## Ranunculus.acris Ranunculus.repens
## 0.03030303 0.05282396
## Reseda.lutea Rhinanthus.minor
## 0.03030303 0.03030303
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.03030303 0.23992502
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.06060606 0.06060606
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.11668053 0.06060606
## Sedum.anglicum Senecio.jacobaea
## 0.03030303 0.06060606
## Senecio.vulgaris Sonchus.arvensis
## 0.03030303 0.03030303
## Stachys.sylvatica Stellaria.apetala
## 0.06060606 0.03030303
## Taraxacum.agg. Thuidium.tamariscinum
## 0.19518927 0.09090909
## Thymus.polytrichus Trichostomum.crispulum
## 0.11346313 0.19432548
## Trifolium.campestre Trifolium.dubium
## 0.21710526 0.09378613
## Trifolium.pratense Trifolium.repens
## 0.06963250 0.07748619
## Trisetum.flavescens Tussilago.farfara
## 0.12121212 0.04930279
## Urtica.diocia Veronica.officinalis
## 0.07173101 0.03030303
## Vicia.sativa Viola.riviniana
## 0.03030303 0.03030303
## Weissia.controversa Zygodon.stirtonii
## 0.03030303 0.03030303
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.247 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 0.399
## Anthyllis.vulneraria Aphanes.arvensis
## 0.505 0.741
## Arrhenatherum.elatius Atrichum.undulatum
## 0.642 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.989
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 0.180 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.546 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 0.873
## Bryum.capillare Bryum.spp.
## 1.000 0.762
## Calliergonella.cupsidata Calypogeia.arguta
## 0.745 0.265
## Campanula.rotundifolia Carex.distans
## 1.000 0.360
## Carex.flacca Carex.panicea
## 0.542 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.371 0.382
## Centaurium.erythraea Centaurium.littorale
## 0.833 0.690
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.937
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 0.726 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 0.751
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.375 0.806
## Danthonia.decumbens Daucus.carrota
## 1.000 0.341
## Dicranella.spp. Dicranum.scoparium
## 1.000 0.530
## Epilobium.montanum Equisetum.arvense
## 0.737 0.732
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.865 0.607
## Festuca.rubra Festuca.rubra.agg.
## 0.035 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.724 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 0.410 1.000
## Galium.arvense Galium.saxatile
## 1.000 0.205
## Galium.verum Geum.urbanum
## 0.133 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 0.733 1.000
## Holcus.spp. Holcus.lanatus
## 0.008 0.452
## Holcus.mollis Homalothecium.lutescens
## 0.689 0.213
## Hylocomium.splendens Hypericum.perforatum
## 0.313 0.460
## Hypnum.cupressiforme Hypnum.imponens
## 0.649 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.743 0.188
## Kindbergia.praelonga Lathyrus.pratensis
## 0.440 0.732
## Leontodon.hispidus Leontodon.saxatilis
## 0.910 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.468 0.624
## Lolium.perenne Lophocolea.semiteres
## 0.932 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.059 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 0.140 0.669
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.012
## Plantago.coronopus Plantago.lanceolata
## 0.117 0.662
## Pleurozium.schreberi Poa.annua
## 0.571 0.871
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 0.501 0.509
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.505 0.728
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.442
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.209 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.595 0.734
## Thymus.polytrichus Trichostomum.crispulum
## 0.865 0.116
## Trifolium.campestre Trifolium.dubium
## 0.143 0.356
## Trifolium.pratense Trifolium.repens
## 0.875 0.975
## Trisetum.flavescens Tussilago.farfara
## 0.591 1.000
## Urtica.diocia Veronica.officinalis
## 0.968 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Holcus spp. has an indval score of 0.659 and a low p value of 0.008. This is the indicator #species for Nitratine.
clustOrthoclase <-cut(PlantChemistry1$Orthoclase, 5, labels=FALSE)
OrthoclaseIndval <- indval(as.matrix(PlantSpecies1), clustOrthoclase, type= "long")
gr <- OrthoclaseIndval$maxcls[OrthoclaseIndval$pval<=0.05]
iv <- OrthoclaseIndval$indcls[OrthoclaseIndval$pval<=0.05]
pv <- OrthoclaseIndval$pval[OrthoclaseIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[OrthoclaseIndval$pval<=0.05]
OrthoclaseIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
OrthoclaseIndvalsummary <- OrthoclaseIndvalsummary [order
(OrthoclaseIndvalsummary$group, -OrthoclaseIndvalsummary$indval),]
print(OrthoclaseIndvalsummary)
## group indval pvalue freq
## Campanula.rotundifolia 2 1.0000000 0.028 2
## Equisteum.variegatum 2 1.0000000 0.026 2
## Medicago.lupulina 2 0.9961686 0.016 5
## Ononis.repens 2 0.9511568 0.045 1
## Hypnum.cupressiforme 2 0.9356725 0.024 1
## Pillosella.officinarum 2 0.8878049 0.048 4
summary(indval(as.matrix(PlantSpecies1), clustOrthoclase))
## cluster indicator_value probability
## Campanula.rotundifolia 2 1.0000 0.025
## Equisteum.variegatum 2 1.0000 0.022
## Medicago.lupulina 2 0.9962 0.023
## Ononis.repens 2 0.9512 0.047
## Hypnum.cupressiforme 2 0.9357 0.021
## Pillosella.officinarum 2 0.8878 0.046
## Equisetum.arvense 2 0.8830 0.045
##
## Sum of probabilities = 129.491
##
## Sum of Indicator Values = 22.13
##
## Sum of Significant Indicator Values = 6.65
##
## Number of Significant Indicators = 7
##
## Significant Indicator Distribution
##
## 2
## 7
print(indval(as.matrix(PlantSpecies1), clustOrthoclase))
## $relfrq
## 1 5
## Agrostis.spp. 0.200 0
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.025 0
## Alopercus.pratensis 0.025 0
## Angelica.sylvestris 0.050 0
## Anthoxanthum.odoratum 0.125 1
## Anthyllis.vulneraria 0.125 0
## Aphanes.arvensis 0.075 0
## Arrhenatherum.elatius 0.200 0
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.025 0
## Bellis.perennis 0.300 0
## Betula.pubescens 0.025 0
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.100 0
## Brachythecium.rutabulum 0.150 0
## Briza.media 0.075 0
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.025 0
## Bryum.c.f..pallescens 0.075 0
## Bryum.capillare 0.025 0
## Bryum.spp. 0.075 0
## Calliergonella.cupsidata 0.375 0
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.000 1
## Carex.distans 0.050 0
## Carex.flacca 0.175 0
## Carex.panicea 0.025 0
## Carlina.vulgaris 0.225 1
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.075 1
## Centaurium.pulchellum 0.025 0
## Cerastium.fontanum 0.150 1
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.025 0
## Cirsium.arvense 0.075 0
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.050 0
## Cynosurus.cristatus 0.075 0
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.050 0
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.125 0
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.050 1
## Equisteum.variegatum 0.000 1
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.275 0
## Festuca.ovina 0.175 0
## Festuca.rubra 0.350 1
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.075 0
## Fissidens.adianthoides 0.025 0
## Fissidens.dubius 0.050 0
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.150 0
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.100 0
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.025 0
## Holcus.spp. 0.525 0
## Holcus.lanatus 0.275 1
## Holcus.mollis 0.150 0
## Homalothecium.lutescens 0.050 0
## Hylocomium.splendens 0.175 0
## Hypericum.perforatum 0.150 0
## Hypnum.cupressiforme 0.225 1
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.025 0
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.075 0
## Leontodon.hispidus 0.125 0
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.325 1
## Linum.catharticum 0.125 0
## Lolium.perenne 0.100 0
## Lophocolea.semiteres 0.025 0
## Lotus.corniculatus 0.450 0
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.050 0
## Medicago.lupulina 0.100 1
## Myosotis.arvensis 0.125 0
## Ononis.repens 0.175 1
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.275 1
## Plantago.coronopus 0.100 0
## Plantago.lanceolata 0.300 1
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.075 0
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.100 0
## Prunella.vulgaris 0.125 0
## Pseudoscleropidum.purum 0.200 0
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.075 0
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.325 0
## Rhytidadelphus.triquetris 0.050 0
## Rubus.fruticosus 0.050 0
## Sanguisorba.minor.spp.minor 0.050 0
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.050 0
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.050 0
## Stellaria.apetala 0.025 0
## Taraxacum.agg. 0.275 0
## Thuidium.tamariscinum 0.075 0
## Thymus.polytrichus 0.200 0
## Trichostomum.crispulum 0.150 0
## Trifolium.campestre 0.175 0
## Trifolium.dubium 0.050 0
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.125 0
## Trisetum.flavescens 0.100 0
## Tussilago.farfara 0.075 0
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.025 0
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.025 0
## Zygodon.stirtonii 0.025 0
##
## $relabu
## 1 5
## Agrostis.spp. 1.000000000 0.0000000
## Agrostis.canina 1.000000000 0.0000000
## Alchemilla.mollis 1.000000000 0.0000000
## Alopercus.pratensis 1.000000000 0.0000000
## Angelica.sylvestris 1.000000000 0.0000000
## Anthoxanthum.odoratum 0.465648855 0.5343511
## Anthyllis.vulneraria 1.000000000 0.0000000
## Aphanes.arvensis 1.000000000 0.0000000
## Arrhenatherum.elatius 1.000000000 0.0000000
## Atrichum.undulatum 1.000000000 0.0000000
## Avenula.pratensis 1.000000000 0.0000000
## Bellis.perennis 1.000000000 0.0000000
## Betula.pubescens 1.000000000 0.0000000
## Blackstonia.perfoliata 1.000000000 0.0000000
## Brachythecium.albicans 1.000000000 0.0000000
## Brachythecium.glareosum 1.000000000 0.0000000
## Brachythecium.mildeanum 1.000000000 0.0000000
## Brachythecium.rutabulum 1.000000000 0.0000000
## Briza.media 1.000000000 0.0000000
## Bromus.hordeaceus 1.000000000 0.0000000
## Bryum.c.f..caespiticium 1.000000000 0.0000000
## Bryum.c.f..pallescens 1.000000000 0.0000000
## Bryum.capillare 1.000000000 0.0000000
## Bryum.spp. 1.000000000 0.0000000
## Calliergonella.cupsidata 1.000000000 0.0000000
## Calypogeia.arguta 1.000000000 0.0000000
## Campanula.rotundifolia 0.000000000 1.0000000
## Carex.distans 1.000000000 0.0000000
## Carex.flacca 1.000000000 0.0000000
## Carex.panicea 1.000000000 0.0000000
## Carlina.vulgaris 0.250000000 0.7500000
## Centaurea.nigra 1.000000000 0.0000000
## Centaurium.erythraea 1.000000000 0.0000000
## Centaurium.littorale 0.058823529 0.9411765
## Centaurium.pulchellum 1.000000000 0.0000000
## Cerastium.fontanum 0.230769231 0.7692308
## Chamaenerion.angustifolium 1.000000000 0.0000000
## Cirriphyllum.piliferum 1.000000000 0.0000000
## Cirsium.arvense 1.000000000 0.0000000
## Cirsium.palustre 1.000000000 0.0000000
## Crepis.capillaris 1.000000000 0.0000000
## Cynosurus.cristatus 1.000000000 0.0000000
## Dactylis.glomerata 1.000000000 0.0000000
## Dactylorhiza.fuchsii 1.000000000 0.0000000
## Danthonia.decumbens 1.000000000 0.0000000
## Daucus.carrota 1.000000000 0.0000000
## Dicranella.spp. 1.000000000 0.0000000
## Dicranum.scoparium 1.000000000 0.0000000
## Epilobium.montanum 1.000000000 0.0000000
## Equisetum.arvense 0.116997792 0.8830022
## Equisteum.variegatum 0.000000000 1.0000000
## Erigeron.acer 1.000000000 0.0000000
## Euphrasia.agg 1.000000000 0.0000000
## Festuca.ovina 1.000000000 0.0000000
## Festuca.rubra 0.823788546 0.1762115
## Festuca.rubra.agg. 1.000000000 0.0000000
## Filipendula.ulmaria 1.000000000 0.0000000
## Fissidens.adianthoides 1.000000000 0.0000000
## Fissidens.dubius 1.000000000 0.0000000
## Fissidens.exilis 1.000000000 0.0000000
## Fragaria.vesca 1.000000000 0.0000000
## Galium.aparine 1.000000000 0.0000000
## Galium.arvense 1.000000000 0.0000000
## Galium.saxatile 1.000000000 0.0000000
## Galium.verum 1.000000000 0.0000000
## Geum.urbanum 1.000000000 0.0000000
## Glechoma.hederacea 1.000000000 0.0000000
## Helicotrichon.spp. 1.000000000 0.0000000
## Heracleum.sphondylium 1.000000000 0.0000000
## Hieracium.spp. 1.000000000 0.0000000
## Holcus.spp. 1.000000000 0.0000000
## Holcus.lanatus 0.236479321 0.7635207
## Holcus.mollis 1.000000000 0.0000000
## Homalothecium.lutescens 1.000000000 0.0000000
## Hylocomium.splendens 1.000000000 0.0000000
## Hypericum.perforatum 1.000000000 0.0000000
## Hypnum.cupressiforme 0.064327485 0.9356725
## Hypnum.imponens 1.000000000 0.0000000
## Hypnum.jutlandicum 1.000000000 0.0000000
## Hypochaeris.radicata 1.000000000 0.0000000
## Kindbergia.praelonga 1.000000000 0.0000000
## Lathyrus.pratensis 1.000000000 0.0000000
## Leontodon.hispidus 1.000000000 0.0000000
## Leontodon.saxatilis 1.000000000 0.0000000
## Leucanthemum.vulgare 0.708029197 0.2919708
## Linum.catharticum 1.000000000 0.0000000
## Lolium.perenne 1.000000000 0.0000000
## Lophocolea.semiteres 1.000000000 0.0000000
## Lotus.corniculatus 1.000000000 0.0000000
## Luzula.multiflora 1.000000000 0.0000000
## Lysimachia.maritima 1.000000000 0.0000000
## Medicago.lupulina 0.003831418 0.9961686
## Myosotis.arvensis 1.000000000 0.0000000
## Ononis.repens 0.048843188 0.9511568
## Oxalis.acetosella 1.000000000 0.0000000
## Pastinaca.sativa 1.000000000 0.0000000
## Pentaglottis.sempervirens 1.000000000 0.0000000
## Pillosella.officinarum 0.112195122 0.8878049
## Plantago.coronopus 1.000000000 0.0000000
## Plantago.lanceolata 0.411764706 0.5882353
## Pleurozium.schreberi 1.000000000 0.0000000
## Poa.annua 1.000000000 0.0000000
## Poa.spp. 1.000000000 0.0000000
## Polytrichum.commune 1.000000000 0.0000000
## Polytrichum.commune.agg. 1.000000000 0.0000000
## Polytrichum.formosum 1.000000000 0.0000000
## Potentilla.reptans 1.000000000 0.0000000
## Prunella.vulgaris 1.000000000 0.0000000
## Pseudoscleropidum.purum 1.000000000 0.0000000
## Pteridium.aquilinum 1.000000000 0.0000000
## Ranunculus.acris 1.000000000 0.0000000
## Ranunculus.repens 1.000000000 0.0000000
## Reseda.lutea 1.000000000 0.0000000
## Rhinanthus.minor 1.000000000 0.0000000
## Rhizomnium.punctatum 1.000000000 0.0000000
## Rhytidadelphus.squarrosus 1.000000000 0.0000000
## Rhytidadelphus.triquetris 1.000000000 0.0000000
## Rubus.fruticosus 1.000000000 0.0000000
## Sanguisorba.minor.spp.minor 1.000000000 0.0000000
## Saniona.uncinata 1.000000000 0.0000000
## Sedum.anglicum 1.000000000 0.0000000
## Senecio.jacobaea 1.000000000 0.0000000
## Senecio.vulgaris 1.000000000 0.0000000
## Sonchus.arvensis 1.000000000 0.0000000
## Stachys.sylvatica 1.000000000 0.0000000
## Stellaria.apetala 1.000000000 0.0000000
## Taraxacum.agg. 1.000000000 0.0000000
## Thuidium.tamariscinum 1.000000000 0.0000000
## Thymus.polytrichus 1.000000000 0.0000000
## Trichostomum.crispulum 1.000000000 0.0000000
## Trifolium.campestre 1.000000000 0.0000000
## Trifolium.dubium 1.000000000 0.0000000
## Trifolium.pratense 1.000000000 0.0000000
## Trifolium.repens 1.000000000 0.0000000
## Trisetum.flavescens 1.000000000 0.0000000
## Tussilago.farfara 1.000000000 0.0000000
## Urtica.diocia 1.000000000 0.0000000
## Veronica.officinalis 1.000000000 0.0000000
## Vicia.sativa 1.000000000 0.0000000
## Viola.riviniana 1.000000000 0.0000000
## Weissia.controversa 1.000000000 0.0000000
## Zygodon.stirtonii 1.000000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.2000000000 0.0000000
## Agrostis.canina 0.0250000000 0.0000000
## Alchemilla.mollis 0.0250000000 0.0000000
## Alopercus.pratensis 0.0250000000 0.0000000
## Angelica.sylvestris 0.0500000000 0.0000000
## Anthoxanthum.odoratum 0.0582061069 0.5343511
## Anthyllis.vulneraria 0.1250000000 0.0000000
## Aphanes.arvensis 0.0750000000 0.0000000
## Arrhenatherum.elatius 0.2000000000 0.0000000
## Atrichum.undulatum 0.0500000000 0.0000000
## Avenula.pratensis 0.0250000000 0.0000000
## Bellis.perennis 0.3000000000 0.0000000
## Betula.pubescens 0.0250000000 0.0000000
## Blackstonia.perfoliata 0.0250000000 0.0000000
## Brachythecium.albicans 0.0250000000 0.0000000
## Brachythecium.glareosum 0.0250000000 0.0000000
## Brachythecium.mildeanum 0.1000000000 0.0000000
## Brachythecium.rutabulum 0.1500000000 0.0000000
## Briza.media 0.0750000000 0.0000000
## Bromus.hordeaceus 0.0250000000 0.0000000
## Bryum.c.f..caespiticium 0.0250000000 0.0000000
## Bryum.c.f..pallescens 0.0750000000 0.0000000
## Bryum.capillare 0.0250000000 0.0000000
## Bryum.spp. 0.0750000000 0.0000000
## Calliergonella.cupsidata 0.3750000000 0.0000000
## Calypogeia.arguta 0.2000000000 0.0000000
## Campanula.rotundifolia 0.0000000000 1.0000000
## Carex.distans 0.0500000000 0.0000000
## Carex.flacca 0.1750000000 0.0000000
## Carex.panicea 0.0250000000 0.0000000
## Carlina.vulgaris 0.0562500000 0.7500000
## Centaurea.nigra 0.0500000000 0.0000000
## Centaurium.erythraea 0.0500000000 0.0000000
## Centaurium.littorale 0.0044117647 0.9411765
## Centaurium.pulchellum 0.0250000000 0.0000000
## Cerastium.fontanum 0.0346153846 0.7692308
## Chamaenerion.angustifolium 0.0250000000 0.0000000
## Cirriphyllum.piliferum 0.0250000000 0.0000000
## Cirsium.arvense 0.0750000000 0.0000000
## Cirsium.palustre 0.0500000000 0.0000000
## Crepis.capillaris 0.0500000000 0.0000000
## Cynosurus.cristatus 0.0750000000 0.0000000
## Dactylis.glomerata 0.1500000000 0.0000000
## Dactylorhiza.fuchsii 0.0500000000 0.0000000
## Danthonia.decumbens 0.0250000000 0.0000000
## Daucus.carrota 0.0500000000 0.0000000
## Dicranella.spp. 0.0250000000 0.0000000
## Dicranum.scoparium 0.1250000000 0.0000000
## Epilobium.montanum 0.0750000000 0.0000000
## Equisetum.arvense 0.0058498896 0.8830022
## Equisteum.variegatum 0.0000000000 1.0000000
## Erigeron.acer 0.0500000000 0.0000000
## Euphrasia.agg 0.2750000000 0.0000000
## Festuca.ovina 0.1750000000 0.0000000
## Festuca.rubra 0.2883259912 0.1762115
## Festuca.rubra.agg. 0.0250000000 0.0000000
## Filipendula.ulmaria 0.0750000000 0.0000000
## Fissidens.adianthoides 0.0250000000 0.0000000
## Fissidens.dubius 0.0500000000 0.0000000
## Fissidens.exilis 0.0250000000 0.0000000
## Fragaria.vesca 0.1500000000 0.0000000
## Galium.aparine 0.0250000000 0.0000000
## Galium.arvense 0.0250000000 0.0000000
## Galium.saxatile 0.0250000000 0.0000000
## Galium.verum 0.1000000000 0.0000000
## Geum.urbanum 0.0250000000 0.0000000
## Glechoma.hederacea 0.0250000000 0.0000000
## Helicotrichon.spp. 0.0250000000 0.0000000
## Heracleum.sphondylium 0.0750000000 0.0000000
## Hieracium.spp. 0.0250000000 0.0000000
## Holcus.spp. 0.5250000000 0.0000000
## Holcus.lanatus 0.0650318134 0.7635207
## Holcus.mollis 0.1500000000 0.0000000
## Homalothecium.lutescens 0.0500000000 0.0000000
## Hylocomium.splendens 0.1750000000 0.0000000
## Hypericum.perforatum 0.1500000000 0.0000000
## Hypnum.cupressiforme 0.0144736842 0.9356725
## Hypnum.imponens 0.0250000000 0.0000000
## Hypnum.jutlandicum 0.0750000000 0.0000000
## Hypochaeris.radicata 0.0250000000 0.0000000
## Kindbergia.praelonga 0.1500000000 0.0000000
## Lathyrus.pratensis 0.0750000000 0.0000000
## Leontodon.hispidus 0.1250000000 0.0000000
## Leontodon.saxatilis 0.0250000000 0.0000000
## Leucanthemum.vulgare 0.2301094891 0.2919708
## Linum.catharticum 0.1250000000 0.0000000
## Lolium.perenne 0.1000000000 0.0000000
## Lophocolea.semiteres 0.0250000000 0.0000000
## Lotus.corniculatus 0.4500000000 0.0000000
## Luzula.multiflora 0.0250000000 0.0000000
## Lysimachia.maritima 0.0500000000 0.0000000
## Medicago.lupulina 0.0003831418 0.9961686
## Myosotis.arvensis 0.1250000000 0.0000000
## Ononis.repens 0.0085475578 0.9511568
## Oxalis.acetosella 0.0250000000 0.0000000
## Pastinaca.sativa 0.0250000000 0.0000000
## Pentaglottis.sempervirens 0.0250000000 0.0000000
## Pillosella.officinarum 0.0308536585 0.8878049
## Plantago.coronopus 0.1000000000 0.0000000
## Plantago.lanceolata 0.1235294118 0.5882353
## Pleurozium.schreberi 0.1000000000 0.0000000
## Poa.annua 0.0750000000 0.0000000
## Poa.spp. 0.0250000000 0.0000000
## Polytrichum.commune 0.0250000000 0.0000000
## Polytrichum.commune.agg. 0.0250000000 0.0000000
## Polytrichum.formosum 0.0250000000 0.0000000
## Potentilla.reptans 0.1000000000 0.0000000
## Prunella.vulgaris 0.1250000000 0.0000000
## Pseudoscleropidum.purum 0.2000000000 0.0000000
## Pteridium.aquilinum 0.0750000000 0.0000000
## Ranunculus.acris 0.0250000000 0.0000000
## Ranunculus.repens 0.0750000000 0.0000000
## Reseda.lutea 0.0250000000 0.0000000
## Rhinanthus.minor 0.0250000000 0.0000000
## Rhizomnium.punctatum 0.0250000000 0.0000000
## Rhytidadelphus.squarrosus 0.3250000000 0.0000000
## Rhytidadelphus.triquetris 0.0500000000 0.0000000
## Rubus.fruticosus 0.0500000000 0.0000000
## Sanguisorba.minor.spp.minor 0.0500000000 0.0000000
## Saniona.uncinata 0.0500000000 0.0000000
## Sedum.anglicum 0.0250000000 0.0000000
## Senecio.jacobaea 0.0500000000 0.0000000
## Senecio.vulgaris 0.0250000000 0.0000000
## Sonchus.arvensis 0.0250000000 0.0000000
## Stachys.sylvatica 0.0500000000 0.0000000
## Stellaria.apetala 0.0250000000 0.0000000
## Taraxacum.agg. 0.2750000000 0.0000000
## Thuidium.tamariscinum 0.0750000000 0.0000000
## Thymus.polytrichus 0.2000000000 0.0000000
## Trichostomum.crispulum 0.1500000000 0.0000000
## Trifolium.campestre 0.1750000000 0.0000000
## Trifolium.dubium 0.0500000000 0.0000000
## Trifolium.pratense 0.1000000000 0.0000000
## Trifolium.repens 0.1250000000 0.0000000
## Trisetum.flavescens 0.1000000000 0.0000000
## Tussilago.farfara 0.0750000000 0.0000000
## Urtica.diocia 0.1000000000 0.0000000
## Veronica.officinalis 0.0250000000 0.0000000
## Vicia.sativa 0.0250000000 0.0000000
## Viola.riviniana 0.0250000000 0.0000000
## Weissia.controversa 0.0250000000 0.0000000
## Zygodon.stirtonii 0.0250000000 0.0000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 2
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 2 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 2 1
## Centaurium.erythraea Centaurium.littorale
## 1 2
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 2
## Equisteum.variegatum Erigeron.acer
## 2 1
## Euphrasia.agg Festuca.ovina
## 1 1
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 2
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 2 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 2 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 2
## Myosotis.arvensis Ononis.repens
## 1 2
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 2
## Plantago.coronopus Plantago.lanceolata
## 1 2
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 1 1
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.2000000 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 0.0250000 0.0250000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.0500000 0.5343511
## Anthyllis.vulneraria Aphanes.arvensis
## 0.1250000 0.0750000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.2000000 0.0500000
## Avenula.pratensis Bellis.perennis
## 0.0250000 0.3000000
## Betula.pubescens Blackstonia.perfoliata
## 0.0250000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.1000000 0.1500000
## Briza.media Bromus.hordeaceus
## 0.0750000 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.0250000 0.0750000
## Bryum.capillare Bryum.spp.
## 0.0250000 0.0750000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.3750000 0.2000000
## Campanula.rotundifolia Carex.distans
## 1.0000000 0.0500000
## Carex.flacca Carex.panicea
## 0.1750000 0.0250000
## Carlina.vulgaris Centaurea.nigra
## 0.7500000 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.9411765
## Centaurium.pulchellum Cerastium.fontanum
## 0.0250000 0.7692308
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 0.0250000
## Cirsium.arvense Cirsium.palustre
## 0.0750000 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.0500000 0.0750000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.0500000
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.1250000
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.8830022
## Equisteum.variegatum Erigeron.acer
## 1.0000000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.2750000 0.1750000
## Festuca.rubra Festuca.rubra.agg.
## 0.2883260 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.0750000 0.0250000
## Fissidens.dubius Fissidens.exilis
## 0.0500000 0.0250000
## Fragaria.vesca Galium.aparine
## 0.1500000 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.1000000 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 0.0250000
## Holcus.spp. Holcus.lanatus
## 0.5250000 0.7635207
## Holcus.mollis Homalothecium.lutescens
## 0.1500000 0.0500000
## Hylocomium.splendens Hypericum.perforatum
## 0.1750000 0.1500000
## Hypnum.cupressiforme Hypnum.imponens
## 0.9356725 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 0.0250000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.0750000
## Leontodon.hispidus Leontodon.saxatilis
## 0.1250000 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.2919708 0.1250000
## Lolium.perenne Lophocolea.semiteres
## 0.1000000 0.0250000
## Lotus.corniculatus Luzula.multiflora
## 0.4500000 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.0500000 0.9961686
## Myosotis.arvensis Ononis.repens
## 0.1250000 0.9511568
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.8878049
## Plantago.coronopus Plantago.lanceolata
## 0.1000000 0.5882353
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.0750000
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.1000000 0.1250000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.2000000 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.0750000
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.3250000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.0500000 0.0500000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.0500000 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.0500000
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.0500000 0.0250000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.2750000 0.0750000
## Thymus.polytrichus Trichostomum.crispulum
## 0.2000000 0.1500000
## Trifolium.campestre Trifolium.dubium
## 0.1750000 0.0500000
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.1250000
## Trisetum.flavescens Tussilago.farfara
## 0.1000000 0.0750000
## Urtica.diocia Veronica.officinalis
## 0.1000000 0.0250000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 0.0250000 0.0250000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1.000 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 0.152
## Anthyllis.vulneraria Aphanes.arvensis
## 1.000 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 1.000 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 1.000
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.900 1.000
## Campanula.rotundifolia Carex.distans
## 0.033 1.000
## Carex.flacca Carex.panicea
## 0.961 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.181 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 0.071
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.185
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 0.052
## Equisteum.variegatum Erigeron.acer
## 0.030 1.000
## Euphrasia.agg Festuca.ovina
## 0.946 1.000
## Festuca.rubra Festuca.rubra.agg.
## 1.000 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 1.000 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.781 0.144
## Holcus.mollis Homalothecium.lutescens
## 0.976 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.979 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 0.029 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 1.000 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.777 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 0.019
## Myosotis.arvensis Ononis.repens
## 1.000 0.039
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.045
## Plantago.coronopus Plantago.lanceolata
## 1.000 0.178
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1.000 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 1.000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 1.000 1.000
## Trifolium.campestre Trifolium.dubium
## 1.000 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 1.000
## Trisetum.flavescens Tussilago.farfara
## 1.000 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Both Campanula rotundifolia and Equisetum arvense have indval scores of 1, they both #have p values of 0.025. Both of these species are reported as indicator species for #Orthoclase.
clustOrthopyroxene <-cut(PlantChemistry1$Orthopyroxene, 5, labels=FALSE)
OrthopyroxeneIndval <- indval(as.matrix(PlantSpecies1), clustOrthopyroxene, type= "long")
gr <- OrthopyroxeneIndval$maxcls[OrthopyroxeneIndval$pval<=0.05]
iv <- OrthopyroxeneIndval$indcls[OrthopyroxeneIndval$pval<=0.05]
pv <- OrthopyroxeneIndval$pval[OrthopyroxeneIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[OrthopyroxeneIndval$pval<=0.05]
OrthopyroxeneIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
OrthopyroxeneIndvalsummary <- OrthopyroxeneIndvalsummary [order
(OrthopyroxeneIndvalsummary$group, -OrthopyroxeneIndvalsummary$indval),]
print(OrthopyroxeneIndvalsummary)
## group indval pvalue freq
## Poa.annua 2 0.9646977 0.028 1
summary(indval(as.matrix(PlantSpecies1), clustOrthopyroxene))
## cluster indicator_value probability
## Poa.annua 2 0.9647 0.026
##
## Sum of probabilities = 134.515
##
## Sum of Indicator Values = 18.23
##
## Sum of Significant Indicator Values = 0.96
##
## Number of Significant Indicators = 1
##
## Significant Indicator Distribution
##
## 2
## 1
print(indval(as.matrix(PlantSpecies1), clustOrthopyroxene))
## $relfrq
## 1 5
## Agrostis.spp. 0.200 0
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.025 0
## Alopercus.pratensis 0.025 0
## Angelica.sylvestris 0.050 0
## Anthoxanthum.odoratum 0.150 0
## Anthyllis.vulneraria 0.100 1
## Aphanes.arvensis 0.075 0
## Arrhenatherum.elatius 0.200 0
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.025 0
## Bellis.perennis 0.300 0
## Betula.pubescens 0.025 0
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.100 0
## Brachythecium.rutabulum 0.150 0
## Briza.media 0.075 0
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.025 0
## Bryum.c.f..pallescens 0.075 0
## Bryum.capillare 0.025 0
## Bryum.spp. 0.075 0
## Calliergonella.cupsidata 0.375 0
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.025 0
## Carex.distans 0.050 0
## Carex.flacca 0.175 0
## Carex.panicea 0.025 0
## Carlina.vulgaris 0.250 0
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.075 1
## Centaurium.pulchellum 0.025 0
## Cerastium.fontanum 0.175 0
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.025 0
## Cirsium.arvense 0.075 0
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.050 0
## Cynosurus.cristatus 0.075 0
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.050 0
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.125 0
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.075 0
## Equisteum.variegatum 0.025 0
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.275 0
## Festuca.ovina 0.175 0
## Festuca.rubra 0.375 0
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.075 0
## Fissidens.adianthoides 0.025 0
## Fissidens.dubius 0.050 0
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.150 0
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.100 0
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.025 0
## Holcus.spp. 0.525 0
## Holcus.lanatus 0.300 0
## Holcus.mollis 0.150 0
## Homalothecium.lutescens 0.050 0
## Hylocomium.splendens 0.175 0
## Hypericum.perforatum 0.150 0
## Hypnum.cupressiforme 0.250 0
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.025 0
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.075 0
## Leontodon.hispidus 0.125 0
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.350 0
## Linum.catharticum 0.100 1
## Lolium.perenne 0.100 0
## Lophocolea.semiteres 0.025 0
## Lotus.corniculatus 0.450 0
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.050 0
## Medicago.lupulina 0.125 0
## Myosotis.arvensis 0.125 0
## Ononis.repens 0.175 1
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.300 0
## Plantago.coronopus 0.100 0
## Plantago.lanceolata 0.325 0
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.050 1
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.100 0
## Prunella.vulgaris 0.125 0
## Pseudoscleropidum.purum 0.200 0
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.075 0
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.325 0
## Rhytidadelphus.triquetris 0.050 0
## Rubus.fruticosus 0.050 0
## Sanguisorba.minor.spp.minor 0.050 0
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.050 0
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.050 0
## Stellaria.apetala 0.025 0
## Taraxacum.agg. 0.275 0
## Thuidium.tamariscinum 0.075 0
## Thymus.polytrichus 0.175 1
## Trichostomum.crispulum 0.125 1
## Trifolium.campestre 0.175 0
## Trifolium.dubium 0.050 0
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.125 0
## Trisetum.flavescens 0.100 0
## Tussilago.farfara 0.075 0
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.025 0
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.025 0
## Zygodon.stirtonii 0.025 0
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.0000000
## Agrostis.canina 1.00000000 0.0000000
## Alchemilla.mollis 1.00000000 0.0000000
## Alopercus.pratensis 1.00000000 0.0000000
## Angelica.sylvestris 1.00000000 0.0000000
## Anthoxanthum.odoratum 1.00000000 0.0000000
## Anthyllis.vulneraria 0.11167513 0.8883249
## Aphanes.arvensis 1.00000000 0.0000000
## Arrhenatherum.elatius 1.00000000 0.0000000
## Atrichum.undulatum 1.00000000 0.0000000
## Avenula.pratensis 1.00000000 0.0000000
## Bellis.perennis 1.00000000 0.0000000
## Betula.pubescens 1.00000000 0.0000000
## Blackstonia.perfoliata 1.00000000 0.0000000
## Brachythecium.albicans 1.00000000 0.0000000
## Brachythecium.glareosum 1.00000000 0.0000000
## Brachythecium.mildeanum 1.00000000 0.0000000
## Brachythecium.rutabulum 1.00000000 0.0000000
## Briza.media 1.00000000 0.0000000
## Bromus.hordeaceus 1.00000000 0.0000000
## Bryum.c.f..caespiticium 1.00000000 0.0000000
## Bryum.c.f..pallescens 1.00000000 0.0000000
## Bryum.capillare 1.00000000 0.0000000
## Bryum.spp. 1.00000000 0.0000000
## Calliergonella.cupsidata 1.00000000 0.0000000
## Calypogeia.arguta 1.00000000 0.0000000
## Campanula.rotundifolia 1.00000000 0.0000000
## Carex.distans 1.00000000 0.0000000
## Carex.flacca 1.00000000 0.0000000
## Carex.panicea 1.00000000 0.0000000
## Carlina.vulgaris 1.00000000 0.0000000
## Centaurea.nigra 1.00000000 0.0000000
## Centaurium.erythraea 1.00000000 0.0000000
## Centaurium.littorale 0.05882353 0.9411765
## Centaurium.pulchellum 1.00000000 0.0000000
## Cerastium.fontanum 1.00000000 0.0000000
## Chamaenerion.angustifolium 1.00000000 0.0000000
## Cirriphyllum.piliferum 1.00000000 0.0000000
## Cirsium.arvense 1.00000000 0.0000000
## Cirsium.palustre 1.00000000 0.0000000
## Crepis.capillaris 1.00000000 0.0000000
## Cynosurus.cristatus 1.00000000 0.0000000
## Dactylis.glomerata 1.00000000 0.0000000
## Dactylorhiza.fuchsii 1.00000000 0.0000000
## Danthonia.decumbens 1.00000000 0.0000000
## Daucus.carrota 1.00000000 0.0000000
## Dicranella.spp. 1.00000000 0.0000000
## Dicranum.scoparium 1.00000000 0.0000000
## Epilobium.montanum 1.00000000 0.0000000
## Equisetum.arvense 1.00000000 0.0000000
## Equisteum.variegatum 1.00000000 0.0000000
## Erigeron.acer 1.00000000 0.0000000
## Euphrasia.agg 1.00000000 0.0000000
## Festuca.ovina 1.00000000 0.0000000
## Festuca.rubra 1.00000000 0.0000000
## Festuca.rubra.agg. 1.00000000 0.0000000
## Filipendula.ulmaria 1.00000000 0.0000000
## Fissidens.adianthoides 1.00000000 0.0000000
## Fissidens.dubius 1.00000000 0.0000000
## Fissidens.exilis 1.00000000 0.0000000
## Fragaria.vesca 1.00000000 0.0000000
## Galium.aparine 1.00000000 0.0000000
## Galium.arvense 1.00000000 0.0000000
## Galium.saxatile 1.00000000 0.0000000
## Galium.verum 1.00000000 0.0000000
## Geum.urbanum 1.00000000 0.0000000
## Glechoma.hederacea 1.00000000 0.0000000
## Helicotrichon.spp. 1.00000000 0.0000000
## Heracleum.sphondylium 1.00000000 0.0000000
## Hieracium.spp. 1.00000000 0.0000000
## Holcus.spp. 1.00000000 0.0000000
## Holcus.lanatus 1.00000000 0.0000000
## Holcus.mollis 1.00000000 0.0000000
## Homalothecium.lutescens 1.00000000 0.0000000
## Hylocomium.splendens 1.00000000 0.0000000
## Hypericum.perforatum 1.00000000 0.0000000
## Hypnum.cupressiforme 1.00000000 0.0000000
## Hypnum.imponens 1.00000000 0.0000000
## Hypnum.jutlandicum 1.00000000 0.0000000
## Hypochaeris.radicata 1.00000000 0.0000000
## Kindbergia.praelonga 1.00000000 0.0000000
## Lathyrus.pratensis 1.00000000 0.0000000
## Leontodon.hispidus 1.00000000 0.0000000
## Leontodon.saxatilis 1.00000000 0.0000000
## Leucanthemum.vulgare 1.00000000 0.0000000
## Linum.catharticum 0.18367347 0.8163265
## Lolium.perenne 1.00000000 0.0000000
## Lophocolea.semiteres 1.00000000 0.0000000
## Lotus.corniculatus 1.00000000 0.0000000
## Luzula.multiflora 1.00000000 0.0000000
## Lysimachia.maritima 1.00000000 0.0000000
## Medicago.lupulina 1.00000000 0.0000000
## Myosotis.arvensis 1.00000000 0.0000000
## Ononis.repens 0.62546816 0.3745318
## Oxalis.acetosella 1.00000000 0.0000000
## Pastinaca.sativa 1.00000000 0.0000000
## Pentaglottis.sempervirens 1.00000000 0.0000000
## Pillosella.officinarum 1.00000000 0.0000000
## Plantago.coronopus 1.00000000 0.0000000
## Plantago.lanceolata 1.00000000 0.0000000
## Pleurozium.schreberi 1.00000000 0.0000000
## Poa.annua 0.03530234 0.9646977
## Poa.spp. 1.00000000 0.0000000
## Polytrichum.commune 1.00000000 0.0000000
## Polytrichum.commune.agg. 1.00000000 0.0000000
## Polytrichum.formosum 1.00000000 0.0000000
## Potentilla.reptans 1.00000000 0.0000000
## Prunella.vulgaris 1.00000000 0.0000000
## Pseudoscleropidum.purum 1.00000000 0.0000000
## Pteridium.aquilinum 1.00000000 0.0000000
## Ranunculus.acris 1.00000000 0.0000000
## Ranunculus.repens 1.00000000 0.0000000
## Reseda.lutea 1.00000000 0.0000000
## Rhinanthus.minor 1.00000000 0.0000000
## Rhizomnium.punctatum 1.00000000 0.0000000
## Rhytidadelphus.squarrosus 1.00000000 0.0000000
## Rhytidadelphus.triquetris 1.00000000 0.0000000
## Rubus.fruticosus 1.00000000 0.0000000
## Sanguisorba.minor.spp.minor 1.00000000 0.0000000
## Saniona.uncinata 1.00000000 0.0000000
## Sedum.anglicum 1.00000000 0.0000000
## Senecio.jacobaea 1.00000000 0.0000000
## Senecio.vulgaris 1.00000000 0.0000000
## Sonchus.arvensis 1.00000000 0.0000000
## Stachys.sylvatica 1.00000000 0.0000000
## Stellaria.apetala 1.00000000 0.0000000
## Taraxacum.agg. 1.00000000 0.0000000
## Thuidium.tamariscinum 1.00000000 0.0000000
## Thymus.polytrichus 0.08221797 0.9177820
## Trichostomum.crispulum 0.27272727 0.7272727
## Trifolium.campestre 1.00000000 0.0000000
## Trifolium.dubium 1.00000000 0.0000000
## Trifolium.pratense 1.00000000 0.0000000
## Trifolium.repens 1.00000000 0.0000000
## Trisetum.flavescens 1.00000000 0.0000000
## Tussilago.farfara 1.00000000 0.0000000
## Urtica.diocia 1.00000000 0.0000000
## Veronica.officinalis 1.00000000 0.0000000
## Vicia.sativa 1.00000000 0.0000000
## Viola.riviniana 1.00000000 0.0000000
## Weissia.controversa 1.00000000 0.0000000
## Zygodon.stirtonii 1.00000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.200000000 0.0000000
## Agrostis.canina 0.025000000 0.0000000
## Alchemilla.mollis 0.025000000 0.0000000
## Alopercus.pratensis 0.025000000 0.0000000
## Angelica.sylvestris 0.050000000 0.0000000
## Anthoxanthum.odoratum 0.150000000 0.0000000
## Anthyllis.vulneraria 0.011167513 0.8883249
## Aphanes.arvensis 0.075000000 0.0000000
## Arrhenatherum.elatius 0.200000000 0.0000000
## Atrichum.undulatum 0.050000000 0.0000000
## Avenula.pratensis 0.025000000 0.0000000
## Bellis.perennis 0.300000000 0.0000000
## Betula.pubescens 0.025000000 0.0000000
## Blackstonia.perfoliata 0.025000000 0.0000000
## Brachythecium.albicans 0.025000000 0.0000000
## Brachythecium.glareosum 0.025000000 0.0000000
## Brachythecium.mildeanum 0.100000000 0.0000000
## Brachythecium.rutabulum 0.150000000 0.0000000
## Briza.media 0.075000000 0.0000000
## Bromus.hordeaceus 0.025000000 0.0000000
## Bryum.c.f..caespiticium 0.025000000 0.0000000
## Bryum.c.f..pallescens 0.075000000 0.0000000
## Bryum.capillare 0.025000000 0.0000000
## Bryum.spp. 0.075000000 0.0000000
## Calliergonella.cupsidata 0.375000000 0.0000000
## Calypogeia.arguta 0.200000000 0.0000000
## Campanula.rotundifolia 0.025000000 0.0000000
## Carex.distans 0.050000000 0.0000000
## Carex.flacca 0.175000000 0.0000000
## Carex.panicea 0.025000000 0.0000000
## Carlina.vulgaris 0.250000000 0.0000000
## Centaurea.nigra 0.050000000 0.0000000
## Centaurium.erythraea 0.050000000 0.0000000
## Centaurium.littorale 0.004411765 0.9411765
## Centaurium.pulchellum 0.025000000 0.0000000
## Cerastium.fontanum 0.175000000 0.0000000
## Chamaenerion.angustifolium 0.025000000 0.0000000
## Cirriphyllum.piliferum 0.025000000 0.0000000
## Cirsium.arvense 0.075000000 0.0000000
## Cirsium.palustre 0.050000000 0.0000000
## Crepis.capillaris 0.050000000 0.0000000
## Cynosurus.cristatus 0.075000000 0.0000000
## Dactylis.glomerata 0.150000000 0.0000000
## Dactylorhiza.fuchsii 0.050000000 0.0000000
## Danthonia.decumbens 0.025000000 0.0000000
## Daucus.carrota 0.050000000 0.0000000
## Dicranella.spp. 0.025000000 0.0000000
## Dicranum.scoparium 0.125000000 0.0000000
## Epilobium.montanum 0.075000000 0.0000000
## Equisetum.arvense 0.075000000 0.0000000
## Equisteum.variegatum 0.025000000 0.0000000
## Erigeron.acer 0.050000000 0.0000000
## Euphrasia.agg 0.275000000 0.0000000
## Festuca.ovina 0.175000000 0.0000000
## Festuca.rubra 0.375000000 0.0000000
## Festuca.rubra.agg. 0.025000000 0.0000000
## Filipendula.ulmaria 0.075000000 0.0000000
## Fissidens.adianthoides 0.025000000 0.0000000
## Fissidens.dubius 0.050000000 0.0000000
## Fissidens.exilis 0.025000000 0.0000000
## Fragaria.vesca 0.150000000 0.0000000
## Galium.aparine 0.025000000 0.0000000
## Galium.arvense 0.025000000 0.0000000
## Galium.saxatile 0.025000000 0.0000000
## Galium.verum 0.100000000 0.0000000
## Geum.urbanum 0.025000000 0.0000000
## Glechoma.hederacea 0.025000000 0.0000000
## Helicotrichon.spp. 0.025000000 0.0000000
## Heracleum.sphondylium 0.075000000 0.0000000
## Hieracium.spp. 0.025000000 0.0000000
## Holcus.spp. 0.525000000 0.0000000
## Holcus.lanatus 0.300000000 0.0000000
## Holcus.mollis 0.150000000 0.0000000
## Homalothecium.lutescens 0.050000000 0.0000000
## Hylocomium.splendens 0.175000000 0.0000000
## Hypericum.perforatum 0.150000000 0.0000000
## Hypnum.cupressiforme 0.250000000 0.0000000
## Hypnum.imponens 0.025000000 0.0000000
## Hypnum.jutlandicum 0.075000000 0.0000000
## Hypochaeris.radicata 0.025000000 0.0000000
## Kindbergia.praelonga 0.150000000 0.0000000
## Lathyrus.pratensis 0.075000000 0.0000000
## Leontodon.hispidus 0.125000000 0.0000000
## Leontodon.saxatilis 0.025000000 0.0000000
## Leucanthemum.vulgare 0.350000000 0.0000000
## Linum.catharticum 0.018367347 0.8163265
## Lolium.perenne 0.100000000 0.0000000
## Lophocolea.semiteres 0.025000000 0.0000000
## Lotus.corniculatus 0.450000000 0.0000000
## Luzula.multiflora 0.025000000 0.0000000
## Lysimachia.maritima 0.050000000 0.0000000
## Medicago.lupulina 0.125000000 0.0000000
## Myosotis.arvensis 0.125000000 0.0000000
## Ononis.repens 0.109456929 0.3745318
## Oxalis.acetosella 0.025000000 0.0000000
## Pastinaca.sativa 0.025000000 0.0000000
## Pentaglottis.sempervirens 0.025000000 0.0000000
## Pillosella.officinarum 0.300000000 0.0000000
## Plantago.coronopus 0.100000000 0.0000000
## Plantago.lanceolata 0.325000000 0.0000000
## Pleurozium.schreberi 0.100000000 0.0000000
## Poa.annua 0.001765117 0.9646977
## Poa.spp. 0.025000000 0.0000000
## Polytrichum.commune 0.025000000 0.0000000
## Polytrichum.commune.agg. 0.025000000 0.0000000
## Polytrichum.formosum 0.025000000 0.0000000
## Potentilla.reptans 0.100000000 0.0000000
## Prunella.vulgaris 0.125000000 0.0000000
## Pseudoscleropidum.purum 0.200000000 0.0000000
## Pteridium.aquilinum 0.075000000 0.0000000
## Ranunculus.acris 0.025000000 0.0000000
## Ranunculus.repens 0.075000000 0.0000000
## Reseda.lutea 0.025000000 0.0000000
## Rhinanthus.minor 0.025000000 0.0000000
## Rhizomnium.punctatum 0.025000000 0.0000000
## Rhytidadelphus.squarrosus 0.325000000 0.0000000
## Rhytidadelphus.triquetris 0.050000000 0.0000000
## Rubus.fruticosus 0.050000000 0.0000000
## Sanguisorba.minor.spp.minor 0.050000000 0.0000000
## Saniona.uncinata 0.050000000 0.0000000
## Sedum.anglicum 0.025000000 0.0000000
## Senecio.jacobaea 0.050000000 0.0000000
## Senecio.vulgaris 0.025000000 0.0000000
## Sonchus.arvensis 0.025000000 0.0000000
## Stachys.sylvatica 0.050000000 0.0000000
## Stellaria.apetala 0.025000000 0.0000000
## Taraxacum.agg. 0.275000000 0.0000000
## Thuidium.tamariscinum 0.075000000 0.0000000
## Thymus.polytrichus 0.014388145 0.9177820
## Trichostomum.crispulum 0.034090909 0.7272727
## Trifolium.campestre 0.175000000 0.0000000
## Trifolium.dubium 0.050000000 0.0000000
## Trifolium.pratense 0.100000000 0.0000000
## Trifolium.repens 0.125000000 0.0000000
## Trisetum.flavescens 0.100000000 0.0000000
## Tussilago.farfara 0.075000000 0.0000000
## Urtica.diocia 0.100000000 0.0000000
## Veronica.officinalis 0.025000000 0.0000000
## Vicia.sativa 0.025000000 0.0000000
## Viola.riviniana 0.025000000 0.0000000
## Weissia.controversa 0.025000000 0.0000000
## Zygodon.stirtonii 0.025000000 0.0000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 2 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 2
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 1
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 1
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 2
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 2
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 2
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 2 2
## Trifolium.campestre Trifolium.dubium
## 1 1
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.2000000 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 0.0250000 0.0250000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.0500000 0.1500000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.8883249 0.0750000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.2000000 0.0500000
## Avenula.pratensis Bellis.perennis
## 0.0250000 0.3000000
## Betula.pubescens Blackstonia.perfoliata
## 0.0250000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.1000000 0.1500000
## Briza.media Bromus.hordeaceus
## 0.0750000 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.0250000 0.0750000
## Bryum.capillare Bryum.spp.
## 0.0250000 0.0750000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.3750000 0.2000000
## Campanula.rotundifolia Carex.distans
## 0.0250000 0.0500000
## Carex.flacca Carex.panicea
## 0.1750000 0.0250000
## Carlina.vulgaris Centaurea.nigra
## 0.2500000 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.9411765
## Centaurium.pulchellum Cerastium.fontanum
## 0.0250000 0.1750000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 0.0250000
## Cirsium.arvense Cirsium.palustre
## 0.0750000 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.0500000 0.0750000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.0500000
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.1250000
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.0750000
## Equisteum.variegatum Erigeron.acer
## 0.0250000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.2750000 0.1750000
## Festuca.rubra Festuca.rubra.agg.
## 0.3750000 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.0750000 0.0250000
## Fissidens.dubius Fissidens.exilis
## 0.0500000 0.0250000
## Fragaria.vesca Galium.aparine
## 0.1500000 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.1000000 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 0.0250000
## Holcus.spp. Holcus.lanatus
## 0.5250000 0.3000000
## Holcus.mollis Homalothecium.lutescens
## 0.1500000 0.0500000
## Hylocomium.splendens Hypericum.perforatum
## 0.1750000 0.1500000
## Hypnum.cupressiforme Hypnum.imponens
## 0.2500000 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 0.0250000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.0750000
## Leontodon.hispidus Leontodon.saxatilis
## 0.1250000 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.3500000 0.8163265
## Lolium.perenne Lophocolea.semiteres
## 0.1000000 0.0250000
## Lotus.corniculatus Luzula.multiflora
## 0.4500000 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.0500000 0.1250000
## Myosotis.arvensis Ononis.repens
## 0.1250000 0.3745318
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.3000000
## Plantago.coronopus Plantago.lanceolata
## 0.1000000 0.3250000
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.9646977
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.1000000 0.1250000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.2000000 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.0750000
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.3250000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.0500000 0.0500000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.0500000 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.0500000
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.0500000 0.0250000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.2750000 0.0750000
## Thymus.polytrichus Trichostomum.crispulum
## 0.9177820 0.7272727
## Trifolium.campestre Trifolium.dubium
## 0.1750000 0.0500000
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.1250000
## Trisetum.flavescens Tussilago.farfara
## 0.1000000 0.0750000
## Urtica.diocia Veronica.officinalis
## 0.1000000 0.0250000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 0.0250000 0.0250000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1.000 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.068 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 1.000 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 1.000
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.922 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.979 1.000
## Carlina.vulgaris Centaurea.nigra
## 1.000 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 0.064
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 1.000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.954 1.000
## Festuca.rubra Festuca.rubra.agg.
## 0.900 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 1.000 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.777 0.965
## Holcus.mollis Homalothecium.lutescens
## 0.978 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.974 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 1.000 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.923 0.097
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.746 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.100
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.872
## Plantago.coronopus Plantago.lanceolata
## 1.000 0.917
## Pleurozium.schreberi Poa.annua
## 1.000 0.022
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1.000 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 1.000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.082 0.160
## Trifolium.campestre Trifolium.dubium
## 1.000 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 1.000
## Trisetum.flavescens Tussilago.farfara
## 1.000 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Poa annua has a high indval value of 0.965 and a low p value of 0.016. This is the #indicator species for Orthopyroxene.
clustPericlase <-cut(PlantChemistry1$Periclase, 5, labels=FALSE)
PericlaseIndval <- indval(as.matrix(PlantSpecies1), clustPericlase, type= "long")
gr <- PericlaseIndval$maxcls[PericlaseIndval$pval<=0.05]
iv <- PericlaseIndval$indcls[PericlaseIndval$pval<=0.05]
pv <- PericlaseIndval$pval[PericlaseIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[PericlaseIndval$pval<=0.05]
PericlaseIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
PericlaseIndvalsummary <- PericlaseIndvalsummary [order
(PericlaseIndvalsummary$group, -PericlaseIndvalsummary$indval),]
print(PericlaseIndvalsummary)
## group indval pvalue freq
## Pillosella.officinarum 2 0.5527240 0.020 4
## Myosotis.arvensis 2 0.3393939 0.046 8
summary(indval(as.matrix(PlantSpecies1), clustPericlase))
## cluster indicator_value probability
## Pillosella.officinarum 2 0.5527 0.026
##
## Sum of probabilities = 117.276
##
## Sum of Indicator Values = 14.22
##
## Sum of Significant Indicator Values = 0.55
##
## Number of Significant Indicators = 1
##
## Significant Indicator Distribution
##
## 2
## 1
print(indval(as.matrix(PlantSpecies1), clustPericlase))
## $relfrq
## 1 5
## Agrostis.spp. 0.19444444 0.2
## Agrostis.canina 0.02777778 0.0
## Alchemilla.mollis 0.02777778 0.0
## Alopercus.pratensis 0.02777778 0.0
## Angelica.sylvestris 0.02777778 0.2
## Anthoxanthum.odoratum 0.16666667 0.0
## Anthyllis.vulneraria 0.13888889 0.0
## Aphanes.arvensis 0.08333333 0.0
## Arrhenatherum.elatius 0.22222222 0.0
## Atrichum.undulatum 0.05555556 0.0
## Avenula.pratensis 0.02777778 0.0
## Bellis.perennis 0.33333333 0.0
## Betula.pubescens 0.02777778 0.0
## Blackstonia.perfoliata 0.02777778 0.0
## Brachythecium.albicans 0.02777778 0.0
## Brachythecium.glareosum 0.02777778 0.0
## Brachythecium.mildeanum 0.11111111 0.0
## Brachythecium.rutabulum 0.13888889 0.2
## Briza.media 0.05555556 0.2
## Bromus.hordeaceus 0.02777778 0.0
## Bryum.c.f..caespiticium 0.02777778 0.0
## Bryum.c.f..pallescens 0.05555556 0.2
## Bryum.capillare 0.02777778 0.0
## Bryum.spp. 0.08333333 0.0
## Calliergonella.cupsidata 0.36111111 0.4
## Calypogeia.arguta 0.19444444 0.2
## Campanula.rotundifolia 0.02777778 0.0
## Carex.distans 0.05555556 0.0
## Carex.flacca 0.19444444 0.0
## Carex.panicea 0.02777778 0.0
## Carlina.vulgaris 0.22222222 0.4
## Centaurea.nigra 0.05555556 0.0
## Centaurium.erythraea 0.05555556 0.0
## Centaurium.littorale 0.11111111 0.0
## Centaurium.pulchellum 0.02777778 0.0
## Cerastium.fontanum 0.16666667 0.2
## Chamaenerion.angustifolium 0.02777778 0.0
## Cirriphyllum.piliferum 0.02777778 0.0
## Cirsium.arvense 0.05555556 0.2
## Cirsium.palustre 0.05555556 0.0
## Crepis.capillaris 0.05555556 0.0
## Cynosurus.cristatus 0.08333333 0.0
## Dactylis.glomerata 0.13888889 0.2
## Dactylorhiza.fuchsii 0.05555556 0.0
## Danthonia.decumbens 0.02777778 0.0
## Daucus.carrota 0.05555556 0.0
## Dicranella.spp. 0.00000000 0.2
## Dicranum.scoparium 0.13888889 0.0
## Epilobium.montanum 0.08333333 0.0
## Equisetum.arvense 0.05555556 0.2
## Equisteum.variegatum 0.02777778 0.0
## Erigeron.acer 0.05555556 0.0
## Euphrasia.agg 0.30555556 0.0
## Festuca.ovina 0.16666667 0.2
## Festuca.rubra 0.38888889 0.2
## Festuca.rubra.agg. 0.02777778 0.0
## Filipendula.ulmaria 0.08333333 0.0
## Fissidens.adianthoides 0.02777778 0.0
## Fissidens.dubius 0.05555556 0.0
## Fissidens.exilis 0.00000000 0.2
## Fragaria.vesca 0.16666667 0.0
## Galium.aparine 0.02777778 0.0
## Galium.arvense 0.02777778 0.0
## Galium.saxatile 0.00000000 0.2
## Galium.verum 0.11111111 0.0
## Geum.urbanum 0.02777778 0.0
## Glechoma.hederacea 0.02777778 0.0
## Helicotrichon.spp. 0.02777778 0.0
## Heracleum.sphondylium 0.08333333 0.0
## Hieracium.spp. 0.02777778 0.0
## Holcus.spp. 0.52777778 0.4
## Holcus.lanatus 0.30555556 0.2
## Holcus.mollis 0.13888889 0.2
## Homalothecium.lutescens 0.02777778 0.2
## Hylocomium.splendens 0.19444444 0.0
## Hypericum.perforatum 0.16666667 0.0
## Hypnum.cupressiforme 0.25000000 0.2
## Hypnum.imponens 0.02777778 0.0
## Hypnum.jutlandicum 0.08333333 0.0
## Hypochaeris.radicata 0.00000000 0.2
## Kindbergia.praelonga 0.13888889 0.2
## Lathyrus.pratensis 0.08333333 0.0
## Leontodon.hispidus 0.13888889 0.0
## Leontodon.saxatilis 0.02777778 0.0
## Leucanthemum.vulgare 0.36111111 0.2
## Linum.catharticum 0.13888889 0.0
## Lolium.perenne 0.11111111 0.0
## Lophocolea.semiteres 0.02777778 0.0
## Lotus.corniculatus 0.44444444 0.4
## Luzula.multiflora 0.02777778 0.0
## Lysimachia.maritima 0.05555556 0.0
## Medicago.lupulina 0.13888889 0.0
## Myosotis.arvensis 0.08333333 0.4
## Ononis.repens 0.19444444 0.2
## Oxalis.acetosella 0.02777778 0.0
## Pastinaca.sativa 0.02777778 0.0
## Pentaglottis.sempervirens 0.02777778 0.0
## Pillosella.officinarum 0.25000000 0.6
## Plantago.coronopus 0.08333333 0.2
## Plantago.lanceolata 0.36111111 0.0
## Pleurozium.schreberi 0.11111111 0.0
## Poa.annua 0.08333333 0.0
## Poa.spp. 0.02777778 0.0
## Polytrichum.commune 0.02777778 0.0
## Polytrichum.commune.agg. 0.02777778 0.0
## Polytrichum.formosum 0.02777778 0.0
## Potentilla.reptans 0.11111111 0.0
## Prunella.vulgaris 0.13888889 0.0
## Pseudoscleropidum.purum 0.19444444 0.2
## Pteridium.aquilinum 0.08333333 0.0
## Ranunculus.acris 0.02777778 0.0
## Ranunculus.repens 0.05555556 0.2
## Reseda.lutea 0.02777778 0.0
## Rhinanthus.minor 0.02777778 0.0
## Rhizomnium.punctatum 0.02777778 0.0
## Rhytidadelphus.squarrosus 0.30555556 0.4
## Rhytidadelphus.triquetris 0.05555556 0.0
## Rubus.fruticosus 0.05555556 0.0
## Sanguisorba.minor.spp.minor 0.05555556 0.0
## Saniona.uncinata 0.05555556 0.0
## Sedum.anglicum 0.02777778 0.0
## Senecio.jacobaea 0.05555556 0.0
## Senecio.vulgaris 0.02777778 0.0
## Sonchus.arvensis 0.02777778 0.0
## Stachys.sylvatica 0.05555556 0.0
## Stellaria.apetala 0.02777778 0.0
## Taraxacum.agg. 0.25000000 0.4
## Thuidium.tamariscinum 0.08333333 0.0
## Thymus.polytrichus 0.16666667 0.4
## Trichostomum.crispulum 0.13888889 0.2
## Trifolium.campestre 0.16666667 0.2
## Trifolium.dubium 0.02777778 0.2
## Trifolium.pratense 0.11111111 0.0
## Trifolium.repens 0.11111111 0.2
## Trisetum.flavescens 0.11111111 0.0
## Tussilago.farfara 0.05555556 0.2
## Urtica.diocia 0.08333333 0.2
## Veronica.officinalis 0.02777778 0.0
## Vicia.sativa 0.02777778 0.0
## Viola.riviniana 0.02777778 0.0
## Weissia.controversa 0.02777778 0.0
## Zygodon.stirtonii 0.02777778 0.0
##
## $relabu
## 1 5
## Agrostis.spp. 0.238095238 0.76190476
## Agrostis.canina 1.000000000 0.00000000
## Alchemilla.mollis 1.000000000 0.00000000
## Alopercus.pratensis 1.000000000 0.00000000
## Angelica.sylvestris 0.121951220 0.87804878
## Anthoxanthum.odoratum 1.000000000 0.00000000
## Anthyllis.vulneraria 1.000000000 0.00000000
## Aphanes.arvensis 1.000000000 0.00000000
## Arrhenatherum.elatius 1.000000000 0.00000000
## Atrichum.undulatum 1.000000000 0.00000000
## Avenula.pratensis 1.000000000 0.00000000
## Bellis.perennis 1.000000000 0.00000000
## Betula.pubescens 1.000000000 0.00000000
## Blackstonia.perfoliata 1.000000000 0.00000000
## Brachythecium.albicans 1.000000000 0.00000000
## Brachythecium.glareosum 1.000000000 0.00000000
## Brachythecium.mildeanum 1.000000000 0.00000000
## Brachythecium.rutabulum 0.492957746 0.50704225
## Briza.media 0.692599620 0.30740038
## Bromus.hordeaceus 1.000000000 0.00000000
## Bryum.c.f..caespiticium 1.000000000 0.00000000
## Bryum.c.f..pallescens 0.162790698 0.83720930
## Bryum.capillare 1.000000000 0.00000000
## Bryum.spp. 1.000000000 0.00000000
## Calliergonella.cupsidata 0.300353357 0.69964664
## Calypogeia.arguta 0.486935867 0.51306413
## Campanula.rotundifolia 1.000000000 0.00000000
## Carex.distans 1.000000000 0.00000000
## Carex.flacca 1.000000000 0.00000000
## Carex.panicea 1.000000000 0.00000000
## Carlina.vulgaris 0.377969762 0.62203024
## Centaurea.nigra 1.000000000 0.00000000
## Centaurium.erythraea 1.000000000 0.00000000
## Centaurium.littorale 1.000000000 0.00000000
## Centaurium.pulchellum 1.000000000 0.00000000
## Cerastium.fontanum 0.433070866 0.56692913
## Chamaenerion.angustifolium 1.000000000 0.00000000
## Cirriphyllum.piliferum 1.000000000 0.00000000
## Cirsium.arvense 0.108359133 0.89164087
## Cirsium.palustre 1.000000000 0.00000000
## Crepis.capillaris 1.000000000 0.00000000
## Cynosurus.cristatus 1.000000000 0.00000000
## Dactylis.glomerata 0.730337079 0.26966292
## Dactylorhiza.fuchsii 1.000000000 0.00000000
## Danthonia.decumbens 1.000000000 0.00000000
## Daucus.carrota 1.000000000 0.00000000
## Dicranella.spp. 0.000000000 1.00000000
## Dicranum.scoparium 1.000000000 0.00000000
## Epilobium.montanum 1.000000000 0.00000000
## Equisetum.arvense 0.671981777 0.32801822
## Equisteum.variegatum 1.000000000 0.00000000
## Erigeron.acer 1.000000000 0.00000000
## Euphrasia.agg 1.000000000 0.00000000
## Festuca.ovina 0.466520307 0.53347969
## Festuca.rubra 0.545483975 0.45451602
## Festuca.rubra.agg. 1.000000000 0.00000000
## Filipendula.ulmaria 1.000000000 0.00000000
## Fissidens.adianthoides 1.000000000 0.00000000
## Fissidens.dubius 1.000000000 0.00000000
## Fissidens.exilis 0.000000000 1.00000000
## Fragaria.vesca 1.000000000 0.00000000
## Galium.aparine 1.000000000 0.00000000
## Galium.arvense 1.000000000 0.00000000
## Galium.saxatile 0.000000000 1.00000000
## Galium.verum 1.000000000 0.00000000
## Geum.urbanum 1.000000000 0.00000000
## Glechoma.hederacea 1.000000000 0.00000000
## Helicotrichon.spp. 1.000000000 0.00000000
## Heracleum.sphondylium 1.000000000 0.00000000
## Hieracium.spp. 1.000000000 0.00000000
## Holcus.spp. 0.462017435 0.53798257
## Holcus.lanatus 0.545454545 0.45454545
## Holcus.mollis 0.887412041 0.11258796
## Homalothecium.lutescens 0.008605852 0.99139415
## Hylocomium.splendens 1.000000000 0.00000000
## Hypericum.perforatum 1.000000000 0.00000000
## Hypnum.cupressiforme 0.294117647 0.70588235
## Hypnum.imponens 1.000000000 0.00000000
## Hypnum.jutlandicum 1.000000000 0.00000000
## Hypochaeris.radicata 0.000000000 1.00000000
## Kindbergia.praelonga 0.307692308 0.69230769
## Lathyrus.pratensis 1.000000000 0.00000000
## Leontodon.hispidus 1.000000000 0.00000000
## Leontodon.saxatilis 1.000000000 0.00000000
## Leucanthemum.vulgare 0.930902111 0.06909789
## Linum.catharticum 1.000000000 0.00000000
## Lolium.perenne 1.000000000 0.00000000
## Lophocolea.semiteres 1.000000000 0.00000000
## Lotus.corniculatus 0.757290687 0.24270931
## Luzula.multiflora 1.000000000 0.00000000
## Lysimachia.maritima 1.000000000 0.00000000
## Medicago.lupulina 1.000000000 0.00000000
## Myosotis.arvensis 0.151515152 0.84848485
## Ononis.repens 0.959021059 0.04097894
## Oxalis.acetosella 1.000000000 0.00000000
## Pastinaca.sativa 1.000000000 0.00000000
## Pentaglottis.sempervirens 1.000000000 0.00000000
## Pillosella.officinarum 0.078793336 0.92120666
## Plantago.coronopus 0.546719682 0.45328032
## Plantago.lanceolata 1.000000000 0.00000000
## Pleurozium.schreberi 1.000000000 0.00000000
## Poa.annua 1.000000000 0.00000000
## Poa.spp. 1.000000000 0.00000000
## Polytrichum.commune 1.000000000 0.00000000
## Polytrichum.commune.agg. 1.000000000 0.00000000
## Polytrichum.formosum 1.000000000 0.00000000
## Potentilla.reptans 1.000000000 0.00000000
## Prunella.vulgaris 1.000000000 0.00000000
## Pseudoscleropidum.purum 0.741626794 0.25837321
## Pteridium.aquilinum 1.000000000 0.00000000
## Ranunculus.acris 1.000000000 0.00000000
## Ranunculus.repens 0.795454545 0.20454545
## Reseda.lutea 1.000000000 0.00000000
## Rhinanthus.minor 1.000000000 0.00000000
## Rhizomnium.punctatum 1.000000000 0.00000000
## Rhytidadelphus.squarrosus 0.488454707 0.51154529
## Rhytidadelphus.triquetris 1.000000000 0.00000000
## Rubus.fruticosus 1.000000000 0.00000000
## Sanguisorba.minor.spp.minor 1.000000000 0.00000000
## Saniona.uncinata 1.000000000 0.00000000
## Sedum.anglicum 1.000000000 0.00000000
## Senecio.jacobaea 1.000000000 0.00000000
## Senecio.vulgaris 1.000000000 0.00000000
## Sonchus.arvensis 1.000000000 0.00000000
## Stachys.sylvatica 1.000000000 0.00000000
## Stellaria.apetala 1.000000000 0.00000000
## Taraxacum.agg. 0.604395604 0.39560440
## Thuidium.tamariscinum 1.000000000 0.00000000
## Thymus.polytrichus 0.714721122 0.28527888
## Trichostomum.crispulum 0.318416523 0.68158348
## Trifolium.campestre 0.654261705 0.34573830
## Trifolium.dubium 0.160142349 0.83985765
## Trifolium.pratense 1.000000000 0.00000000
## Trifolium.repens 0.259975816 0.74002418
## Trisetum.flavescens 1.000000000 0.00000000
## Tussilago.farfara 0.384615385 0.61538462
## Urtica.diocia 0.681818182 0.31818182
## Veronica.officinalis 1.000000000 0.00000000
## Vicia.sativa 1.000000000 0.00000000
## Viola.riviniana 1.000000000 0.00000000
## Weissia.controversa 1.000000000 0.00000000
## Zygodon.stirtonii 1.000000000 0.00000000
##
## $indval
## 1 5
## Agrostis.spp. 0.0462962963 0.152380952
## Agrostis.canina 0.0277777778 0.000000000
## Alchemilla.mollis 0.0277777778 0.000000000
## Alopercus.pratensis 0.0277777778 0.000000000
## Angelica.sylvestris 0.0033875339 0.175609756
## Anthoxanthum.odoratum 0.1666666667 0.000000000
## Anthyllis.vulneraria 0.1388888889 0.000000000
## Aphanes.arvensis 0.0833333333 0.000000000
## Arrhenatherum.elatius 0.2222222222 0.000000000
## Atrichum.undulatum 0.0555555556 0.000000000
## Avenula.pratensis 0.0277777778 0.000000000
## Bellis.perennis 0.3333333333 0.000000000
## Betula.pubescens 0.0277777778 0.000000000
## Blackstonia.perfoliata 0.0277777778 0.000000000
## Brachythecium.albicans 0.0277777778 0.000000000
## Brachythecium.glareosum 0.0277777778 0.000000000
## Brachythecium.mildeanum 0.1111111111 0.000000000
## Brachythecium.rutabulum 0.0684663537 0.101408451
## Briza.media 0.0384777567 0.061480076
## Bromus.hordeaceus 0.0277777778 0.000000000
## Bryum.c.f..caespiticium 0.0277777778 0.000000000
## Bryum.c.f..pallescens 0.0090439276 0.167441860
## Bryum.capillare 0.0277777778 0.000000000
## Bryum.spp. 0.0833333333 0.000000000
## Calliergonella.cupsidata 0.1084609344 0.279858657
## Calypogeia.arguta 0.0946819741 0.102612827
## Campanula.rotundifolia 0.0277777778 0.000000000
## Carex.distans 0.0555555556 0.000000000
## Carex.flacca 0.1944444444 0.000000000
## Carex.panicea 0.0277777778 0.000000000
## Carlina.vulgaris 0.0839932805 0.248812095
## Centaurea.nigra 0.0555555556 0.000000000
## Centaurium.erythraea 0.0555555556 0.000000000
## Centaurium.littorale 0.1111111111 0.000000000
## Centaurium.pulchellum 0.0277777778 0.000000000
## Cerastium.fontanum 0.0721784777 0.113385827
## Chamaenerion.angustifolium 0.0277777778 0.000000000
## Cirriphyllum.piliferum 0.0277777778 0.000000000
## Cirsium.arvense 0.0060199518 0.178328173
## Cirsium.palustre 0.0555555556 0.000000000
## Crepis.capillaris 0.0555555556 0.000000000
## Cynosurus.cristatus 0.0833333333 0.000000000
## Dactylis.glomerata 0.1014357054 0.053932584
## Dactylorhiza.fuchsii 0.0555555556 0.000000000
## Danthonia.decumbens 0.0277777778 0.000000000
## Daucus.carrota 0.0555555556 0.000000000
## Dicranella.spp. 0.0000000000 0.200000000
## Dicranum.scoparium 0.1388888889 0.000000000
## Epilobium.montanum 0.0833333333 0.000000000
## Equisetum.arvense 0.0373323209 0.065603645
## Equisteum.variegatum 0.0277777778 0.000000000
## Erigeron.acer 0.0555555556 0.000000000
## Euphrasia.agg 0.3055555556 0.000000000
## Festuca.ovina 0.0777533846 0.106695939
## Festuca.rubra 0.2121326571 0.090903205
## Festuca.rubra.agg. 0.0277777778 0.000000000
## Filipendula.ulmaria 0.0833333333 0.000000000
## Fissidens.adianthoides 0.0277777778 0.000000000
## Fissidens.dubius 0.0555555556 0.000000000
## Fissidens.exilis 0.0000000000 0.200000000
## Fragaria.vesca 0.1666666667 0.000000000
## Galium.aparine 0.0277777778 0.000000000
## Galium.arvense 0.0277777778 0.000000000
## Galium.saxatile 0.0000000000 0.200000000
## Galium.verum 0.1111111111 0.000000000
## Geum.urbanum 0.0277777778 0.000000000
## Glechoma.hederacea 0.0277777778 0.000000000
## Helicotrichon.spp. 0.0277777778 0.000000000
## Heracleum.sphondylium 0.0833333333 0.000000000
## Hieracium.spp. 0.0277777778 0.000000000
## Holcus.spp. 0.2438425349 0.215193026
## Holcus.lanatus 0.1666666667 0.090909091
## Holcus.mollis 0.1232516723 0.022517592
## Homalothecium.lutescens 0.0002390514 0.198278830
## Hylocomium.splendens 0.1944444444 0.000000000
## Hypericum.perforatum 0.1666666667 0.000000000
## Hypnum.cupressiforme 0.0735294118 0.141176471
## Hypnum.imponens 0.0277777778 0.000000000
## Hypnum.jutlandicum 0.0833333333 0.000000000
## Hypochaeris.radicata 0.0000000000 0.200000000
## Kindbergia.praelonga 0.0427350427 0.138461538
## Lathyrus.pratensis 0.0833333333 0.000000000
## Leontodon.hispidus 0.1388888889 0.000000000
## Leontodon.saxatilis 0.0277777778 0.000000000
## Leucanthemum.vulgare 0.3361590958 0.013819578
## Linum.catharticum 0.1388888889 0.000000000
## Lolium.perenne 0.1111111111 0.000000000
## Lophocolea.semiteres 0.0277777778 0.000000000
## Lotus.corniculatus 0.3365736385 0.097083725
## Luzula.multiflora 0.0277777778 0.000000000
## Lysimachia.maritima 0.0555555556 0.000000000
## Medicago.lupulina 0.1388888889 0.000000000
## Myosotis.arvensis 0.0126262626 0.339393939
## Ononis.repens 0.1864763170 0.008195788
## Oxalis.acetosella 0.0277777778 0.000000000
## Pastinaca.sativa 0.0277777778 0.000000000
## Pentaglottis.sempervirens 0.0277777778 0.000000000
## Pillosella.officinarum 0.0196983341 0.552723998
## Plantago.coronopus 0.0455599735 0.090656064
## Plantago.lanceolata 0.3611111111 0.000000000
## Pleurozium.schreberi 0.1111111111 0.000000000
## Poa.annua 0.0833333333 0.000000000
## Poa.spp. 0.0277777778 0.000000000
## Polytrichum.commune 0.0277777778 0.000000000
## Polytrichum.commune.agg. 0.0277777778 0.000000000
## Polytrichum.formosum 0.0277777778 0.000000000
## Potentilla.reptans 0.1111111111 0.000000000
## Prunella.vulgaris 0.1388888889 0.000000000
## Pseudoscleropidum.purum 0.1442052100 0.051674641
## Pteridium.aquilinum 0.0833333333 0.000000000
## Ranunculus.acris 0.0277777778 0.000000000
## Ranunculus.repens 0.0441919192 0.040909091
## Reseda.lutea 0.0277777778 0.000000000
## Rhinanthus.minor 0.0277777778 0.000000000
## Rhizomnium.punctatum 0.0277777778 0.000000000
## Rhytidadelphus.squarrosus 0.1492500493 0.204618117
## Rhytidadelphus.triquetris 0.0555555556 0.000000000
## Rubus.fruticosus 0.0555555556 0.000000000
## Sanguisorba.minor.spp.minor 0.0555555556 0.000000000
## Saniona.uncinata 0.0555555556 0.000000000
## Sedum.anglicum 0.0277777778 0.000000000
## Senecio.jacobaea 0.0555555556 0.000000000
## Senecio.vulgaris 0.0277777778 0.000000000
## Sonchus.arvensis 0.0277777778 0.000000000
## Stachys.sylvatica 0.0555555556 0.000000000
## Stellaria.apetala 0.0277777778 0.000000000
## Taraxacum.agg. 0.1510989011 0.158241758
## Thuidium.tamariscinum 0.0833333333 0.000000000
## Thymus.polytrichus 0.1191201869 0.114111551
## Trichostomum.crispulum 0.0442245171 0.136316695
## Trifolium.campestre 0.1090436174 0.069147659
## Trifolium.dubium 0.0044483986 0.167971530
## Trifolium.pratense 0.1111111111 0.000000000
## Trifolium.repens 0.0288862018 0.148004837
## Trisetum.flavescens 0.1111111111 0.000000000
## Tussilago.farfara 0.0213675214 0.123076923
## Urtica.diocia 0.0568181818 0.063636364
## Veronica.officinalis 0.0277777778 0.000000000
## Vicia.sativa 0.0277777778 0.000000000
## Viola.riviniana 0.0277777778 0.000000000
## Weissia.controversa 0.0277777778 0.000000000
## Zygodon.stirtonii 0.0277777778 0.000000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 2 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 2 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 2
## Briza.media Bromus.hordeaceus
## 2 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 2
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 2 2
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 2 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 2 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 2 1
## Epilobium.montanum Equisetum.arvense
## 1 2
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 2
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 2
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 2
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 1
## Holcus.mollis Homalothecium.lutescens
## 1 2
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 2 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 2
## Kindbergia.praelonga Lathyrus.pratensis
## 2 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 2 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 2
## Plantago.coronopus Plantago.lanceolata
## 2 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 2
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 2 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 2
## Trifolium.campestre Trifolium.dubium
## 1 2
## Trifolium.pratense Trifolium.repens
## 1 2
## Trisetum.flavescens Tussilago.farfara
## 1 2
## Urtica.diocia Veronica.officinalis
## 2 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.15238095 0.02777778
## Alchemilla.mollis Alopercus.pratensis
## 0.02777778 0.02777778
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.17560976 0.16666667
## Anthyllis.vulneraria Aphanes.arvensis
## 0.13888889 0.08333333
## Arrhenatherum.elatius Atrichum.undulatum
## 0.22222222 0.05555556
## Avenula.pratensis Bellis.perennis
## 0.02777778 0.33333333
## Betula.pubescens Blackstonia.perfoliata
## 0.02777778 0.02777778
## Brachythecium.albicans Brachythecium.glareosum
## 0.02777778 0.02777778
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.11111111 0.10140845
## Briza.media Bromus.hordeaceus
## 0.06148008 0.02777778
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.02777778 0.16744186
## Bryum.capillare Bryum.spp.
## 0.02777778 0.08333333
## Calliergonella.cupsidata Calypogeia.arguta
## 0.27985866 0.10261283
## Campanula.rotundifolia Carex.distans
## 0.02777778 0.05555556
## Carex.flacca Carex.panicea
## 0.19444444 0.02777778
## Carlina.vulgaris Centaurea.nigra
## 0.24881210 0.05555556
## Centaurium.erythraea Centaurium.littorale
## 0.05555556 0.11111111
## Centaurium.pulchellum Cerastium.fontanum
## 0.02777778 0.11338583
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.02777778 0.02777778
## Cirsium.arvense Cirsium.palustre
## 0.17832817 0.05555556
## Crepis.capillaris Cynosurus.cristatus
## 0.05555556 0.08333333
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.10143571 0.05555556
## Danthonia.decumbens Daucus.carrota
## 0.02777778 0.05555556
## Dicranella.spp. Dicranum.scoparium
## 0.20000000 0.13888889
## Epilobium.montanum Equisetum.arvense
## 0.08333333 0.06560364
## Equisteum.variegatum Erigeron.acer
## 0.02777778 0.05555556
## Euphrasia.agg Festuca.ovina
## 0.30555556 0.10669594
## Festuca.rubra Festuca.rubra.agg.
## 0.21213266 0.02777778
## Filipendula.ulmaria Fissidens.adianthoides
## 0.08333333 0.02777778
## Fissidens.dubius Fissidens.exilis
## 0.05555556 0.20000000
## Fragaria.vesca Galium.aparine
## 0.16666667 0.02777778
## Galium.arvense Galium.saxatile
## 0.02777778 0.20000000
## Galium.verum Geum.urbanum
## 0.11111111 0.02777778
## Glechoma.hederacea Helicotrichon.spp.
## 0.02777778 0.02777778
## Heracleum.sphondylium Hieracium.spp.
## 0.08333333 0.02777778
## Holcus.spp. Holcus.lanatus
## 0.24384253 0.16666667
## Holcus.mollis Homalothecium.lutescens
## 0.12325167 0.19827883
## Hylocomium.splendens Hypericum.perforatum
## 0.19444444 0.16666667
## Hypnum.cupressiforme Hypnum.imponens
## 0.14117647 0.02777778
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.08333333 0.20000000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.13846154 0.08333333
## Leontodon.hispidus Leontodon.saxatilis
## 0.13888889 0.02777778
## Leucanthemum.vulgare Linum.catharticum
## 0.33615910 0.13888889
## Lolium.perenne Lophocolea.semiteres
## 0.11111111 0.02777778
## Lotus.corniculatus Luzula.multiflora
## 0.33657364 0.02777778
## Lysimachia.maritima Medicago.lupulina
## 0.05555556 0.13888889
## Myosotis.arvensis Ononis.repens
## 0.33939394 0.18647632
## Oxalis.acetosella Pastinaca.sativa
## 0.02777778 0.02777778
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.02777778 0.55272400
## Plantago.coronopus Plantago.lanceolata
## 0.09065606 0.36111111
## Pleurozium.schreberi Poa.annua
## 0.11111111 0.08333333
## Poa.spp. Polytrichum.commune
## 0.02777778 0.02777778
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.02777778 0.02777778
## Potentilla.reptans Prunella.vulgaris
## 0.11111111 0.13888889
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.14420521 0.08333333
## Ranunculus.acris Ranunculus.repens
## 0.02777778 0.04419192
## Reseda.lutea Rhinanthus.minor
## 0.02777778 0.02777778
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.02777778 0.20461812
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.05555556 0.05555556
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.05555556 0.05555556
## Sedum.anglicum Senecio.jacobaea
## 0.02777778 0.05555556
## Senecio.vulgaris Sonchus.arvensis
## 0.02777778 0.02777778
## Stachys.sylvatica Stellaria.apetala
## 0.05555556 0.02777778
## Taraxacum.agg. Thuidium.tamariscinum
## 0.15824176 0.08333333
## Thymus.polytrichus Trichostomum.crispulum
## 0.11912019 0.13631670
## Trifolium.campestre Trifolium.dubium
## 0.10904362 0.16797153
## Trifolium.pratense Trifolium.repens
## 0.11111111 0.14800484
## Trisetum.flavescens Tussilago.farfara
## 0.11111111 0.12307692
## Urtica.diocia Veronica.officinalis
## 0.06363636 0.02777778
## Vicia.sativa Viola.riviniana
## 0.02777778 0.02777778
## Weissia.controversa Zygodon.stirtonii
## 0.02777778 0.02777778
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.773 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.227 0.569
## Anthyllis.vulneraria Aphanes.arvensis
## 0.763 0.912
## Arrhenatherum.elatius Atrichum.undulatum
## 0.437 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.273
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.814 1.000
## Briza.media Bromus.hordeaceus
## 0.904 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 0.235
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.523 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.508 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.437 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 0.916
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.700
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 0.133 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.925 0.881
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 0.103 0.687
## Epilobium.montanum Equisetum.arvense
## 0.906 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.328 0.867
## Festuca.rubra Festuca.rubra.agg.
## 0.801 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 0.138
## Fragaria.vesca Galium.aparine
## 0.574 1.000
## Galium.arvense Galium.saxatile
## 1.000 0.116
## Galium.verum Geum.urbanum
## 0.814 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.976 0.855
## Holcus.mollis Homalothecium.lutescens
## 0.856 0.136
## Hylocomium.splendens Hypericum.perforatum
## 0.558 0.576
## Hypnum.cupressiforme Hypnum.imponens
## 0.867 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.901 0.127
## Kindbergia.praelonga Lathyrus.pratensis
## 0.801 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 0.758 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.330 0.841
## Lolium.perenne Lophocolea.semiteres
## 0.714 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.519 1.000
## Lysimachia.maritima Medicago.lupulina
## 0.890 0.670
## Myosotis.arvensis Ononis.repens
## 0.069 0.727
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.018
## Plantago.coronopus Plantago.lanceolata
## 0.930 0.237
## Pleurozium.schreberi Poa.annua
## 0.907 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 0.749 0.698
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.713 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.727
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.878 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.950 0.722
## Trifolium.campestre Trifolium.dubium
## 0.944 0.226
## Trifolium.pratense Trifolium.repens
## 0.839 0.246
## Trisetum.flavescens Tussilago.farfara
## 0.722 0.220
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Blackstonia perfoliata, Bryum capillare, Festuca rubra agg. and Polytrichum formosum all #have indval scores of 0.5, and they all have similar p values. These four species are all #reported as indicator species for Phengite.
clustPhengite <-cut(PlantChemistry1$Phengite, 5, labels=FALSE)
PhengiteIndval <- indval(as.matrix(PlantSpecies1), clustPhengite, type= "long")
gr <- PhengiteIndval$maxcls[PhengiteIndval$pval<=0.05]
iv <- PhengiteIndval$indcls[PhengiteIndval$pval<=0.05]
pv <- PhengiteIndval$pval[PhengiteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[PhengiteIndval$pval<=0.05]
PhengiteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
PhengiteIndvalsummary <- PhengiteIndvalsummary [order
(PhengiteIndvalsummary$group, -PhengiteIndvalsummary$indval),]
print(PhengiteIndvalsummary)
## group indval pvalue freq
## Blackstonia.perfoliata 2 0.5000000 0.041 1
## Bryum.capillare 2 0.5000000 0.042 3
## Festuca.rubra.agg. 2 0.5000000 0.046 3
## Trisetum.flavescens 2 0.4989599 0.044 3
## Centaurium.erythraea 2 0.4981752 0.048 4
summary(indval(as.matrix(PlantSpecies1), clustPhengite))
## cluster indicator_value probability
## Blackstonia.perfoliata 2 0.5000 0.050
## Bryum.capillare 2 0.5000 0.049
## Trisetum.flavescens 2 0.4990 0.042
## Centaurium.erythraea 2 0.4982 0.045
##
## Sum of probabilities = 118.424
##
## Sum of Indicator Values = 19.62
##
## Sum of Significant Indicator Values = 2
##
## Number of Significant Indicators = 4
##
## Significant Indicator Distribution
##
## 2
## 4
print(indval(as.matrix(PlantSpecies1), clustPhengite))
## $relfrq
## 1 5
## Agrostis.spp. 0.17948718 0.5
## Agrostis.canina 0.02564103 0.0
## Alchemilla.mollis 0.02564103 0.0
## Alopercus.pratensis 0.02564103 0.0
## Angelica.sylvestris 0.05128205 0.0
## Anthoxanthum.odoratum 0.12820513 0.5
## Anthyllis.vulneraria 0.12820513 0.0
## Aphanes.arvensis 0.05128205 0.5
## Arrhenatherum.elatius 0.20512821 0.0
## Atrichum.undulatum 0.05128205 0.0
## Avenula.pratensis 0.02564103 0.0
## Bellis.perennis 0.28205128 0.5
## Betula.pubescens 0.02564103 0.0
## Blackstonia.perfoliata 0.00000000 0.5
## Brachythecium.albicans 0.02564103 0.0
## Brachythecium.glareosum 0.02564103 0.0
## Brachythecium.mildeanum 0.10256410 0.0
## Brachythecium.rutabulum 0.15384615 0.0
## Briza.media 0.07692308 0.0
## Bromus.hordeaceus 0.02564103 0.0
## Bryum.c.f..caespiticium 0.02564103 0.0
## Bryum.c.f..pallescens 0.07692308 0.0
## Bryum.capillare 0.00000000 0.5
## Bryum.spp. 0.07692308 0.0
## Calliergonella.cupsidata 0.38461538 0.0
## Calypogeia.arguta 0.17948718 0.5
## Campanula.rotundifolia 0.02564103 0.0
## Carex.distans 0.05128205 0.0
## Carex.flacca 0.15384615 0.5
## Carex.panicea 0.02564103 0.0
## Carlina.vulgaris 0.25641026 0.0
## Centaurea.nigra 0.05128205 0.0
## Centaurium.erythraea 0.02564103 0.5
## Centaurium.littorale 0.10256410 0.0
## Centaurium.pulchellum 0.02564103 0.0
## Cerastium.fontanum 0.15384615 0.5
## Chamaenerion.angustifolium 0.02564103 0.0
## Cirriphyllum.piliferum 0.02564103 0.0
## Cirsium.arvense 0.07692308 0.0
## Cirsium.palustre 0.05128205 0.0
## Crepis.capillaris 0.05128205 0.0
## Cynosurus.cristatus 0.05128205 0.5
## Dactylis.glomerata 0.15384615 0.0
## Dactylorhiza.fuchsii 0.05128205 0.0
## Danthonia.decumbens 0.02564103 0.0
## Daucus.carrota 0.05128205 0.0
## Dicranella.spp. 0.02564103 0.0
## Dicranum.scoparium 0.10256410 0.5
## Epilobium.montanum 0.07692308 0.0
## Equisetum.arvense 0.07692308 0.0
## Equisteum.variegatum 0.02564103 0.0
## Erigeron.acer 0.05128205 0.0
## Euphrasia.agg 0.25641026 0.5
## Festuca.ovina 0.17948718 0.0
## Festuca.rubra 0.35897436 0.5
## Festuca.rubra.agg. 0.00000000 0.5
## Filipendula.ulmaria 0.07692308 0.0
## Fissidens.adianthoides 0.02564103 0.0
## Fissidens.dubius 0.05128205 0.0
## Fissidens.exilis 0.02564103 0.0
## Fragaria.vesca 0.12820513 0.5
## Galium.aparine 0.02564103 0.0
## Galium.arvense 0.02564103 0.0
## Galium.saxatile 0.02564103 0.0
## Galium.verum 0.10256410 0.0
## Geum.urbanum 0.02564103 0.0
## Glechoma.hederacea 0.02564103 0.0
## Helicotrichon.spp. 0.02564103 0.0
## Heracleum.sphondylium 0.07692308 0.0
## Hieracium.spp. 0.02564103 0.0
## Holcus.spp. 0.51282051 0.5
## Holcus.lanatus 0.28205128 0.5
## Holcus.mollis 0.15384615 0.0
## Homalothecium.lutescens 0.05128205 0.0
## Hylocomium.splendens 0.15384615 0.5
## Hypericum.perforatum 0.12820513 0.5
## Hypnum.cupressiforme 0.23076923 0.5
## Hypnum.imponens 0.02564103 0.0
## Hypnum.jutlandicum 0.05128205 0.5
## Hypochaeris.radicata 0.02564103 0.0
## Kindbergia.praelonga 0.15384615 0.0
## Lathyrus.pratensis 0.07692308 0.0
## Leontodon.hispidus 0.12820513 0.0
## Leontodon.saxatilis 0.02564103 0.0
## Leucanthemum.vulgare 0.33333333 0.5
## Linum.catharticum 0.12820513 0.0
## Lolium.perenne 0.10256410 0.0
## Lophocolea.semiteres 0.02564103 0.0
## Lotus.corniculatus 0.41025641 1.0
## Luzula.multiflora 0.02564103 0.0
## Lysimachia.maritima 0.05128205 0.0
## Medicago.lupulina 0.12820513 0.0
## Myosotis.arvensis 0.12820513 0.0
## Ononis.repens 0.17948718 0.5
## Oxalis.acetosella 0.02564103 0.0
## Pastinaca.sativa 0.02564103 0.0
## Pentaglottis.sempervirens 0.02564103 0.0
## Pillosella.officinarum 0.30769231 0.0
## Plantago.coronopus 0.10256410 0.0
## Plantago.lanceolata 0.30769231 0.5
## Pleurozium.schreberi 0.07692308 0.5
## Poa.annua 0.07692308 0.0
## Poa.spp. 0.02564103 0.0
## Polytrichum.commune 0.02564103 0.0
## Polytrichum.commune.agg. 0.02564103 0.0
## Polytrichum.formosum 0.00000000 0.5
## Potentilla.reptans 0.07692308 0.5
## Prunella.vulgaris 0.12820513 0.0
## Pseudoscleropidum.purum 0.20512821 0.0
## Pteridium.aquilinum 0.07692308 0.0
## Ranunculus.acris 0.02564103 0.0
## Ranunculus.repens 0.07692308 0.0
## Reseda.lutea 0.02564103 0.0
## Rhinanthus.minor 0.02564103 0.0
## Rhizomnium.punctatum 0.02564103 0.0
## Rhytidadelphus.squarrosus 0.33333333 0.0
## Rhytidadelphus.triquetris 0.05128205 0.0
## Rubus.fruticosus 0.05128205 0.0
## Sanguisorba.minor.spp.minor 0.05128205 0.0
## Saniona.uncinata 0.05128205 0.0
## Sedum.anglicum 0.02564103 0.0
## Senecio.jacobaea 0.05128205 0.0
## Senecio.vulgaris 0.02564103 0.0
## Sonchus.arvensis 0.02564103 0.0
## Stachys.sylvatica 0.05128205 0.0
## Stellaria.apetala 0.02564103 0.0
## Taraxacum.agg. 0.28205128 0.0
## Thuidium.tamariscinum 0.07692308 0.0
## Thymus.polytrichus 0.20512821 0.0
## Trichostomum.crispulum 0.15384615 0.0
## Trifolium.campestre 0.17948718 0.0
## Trifolium.dubium 0.05128205 0.0
## Trifolium.pratense 0.10256410 0.0
## Trifolium.repens 0.12820513 0.0
## Trisetum.flavescens 0.07692308 0.5
## Tussilago.farfara 0.07692308 0.0
## Urtica.diocia 0.10256410 0.0
## Veronica.officinalis 0.02564103 0.0
## Vicia.sativa 0.02564103 0.0
## Viola.riviniana 0.02564103 0.0
## Weissia.controversa 0.02564103 0.0
## Zygodon.stirtonii 0.02564103 0.0
##
## $relabu
## 1 5
## Agrostis.spp. 0.351201479 0.6487985
## Agrostis.canina 1.000000000 0.0000000
## Alchemilla.mollis 1.000000000 0.0000000
## Alopercus.pratensis 1.000000000 0.0000000
## Angelica.sylvestris 1.000000000 0.0000000
## Anthoxanthum.odoratum 0.398972603 0.6010274
## Anthyllis.vulneraria 1.000000000 0.0000000
## Aphanes.arvensis 0.109589041 0.8904110
## Arrhenatherum.elatius 1.000000000 0.0000000
## Atrichum.undulatum 1.000000000 0.0000000
## Avenula.pratensis 1.000000000 0.0000000
## Bellis.perennis 0.635514019 0.3644860
## Betula.pubescens 1.000000000 0.0000000
## Blackstonia.perfoliata 0.000000000 1.0000000
## Brachythecium.albicans 1.000000000 0.0000000
## Brachythecium.glareosum 1.000000000 0.0000000
## Brachythecium.mildeanum 1.000000000 0.0000000
## Brachythecium.rutabulum 1.000000000 0.0000000
## Briza.media 1.000000000 0.0000000
## Bromus.hordeaceus 1.000000000 0.0000000
## Bryum.c.f..caespiticium 1.000000000 0.0000000
## Bryum.c.f..pallescens 1.000000000 0.0000000
## Bryum.capillare 0.000000000 1.0000000
## Bryum.spp. 1.000000000 0.0000000
## Calliergonella.cupsidata 1.000000000 0.0000000
## Calypogeia.arguta 0.535714286 0.4642857
## Campanula.rotundifolia 1.000000000 0.0000000
## Carex.distans 1.000000000 0.0000000
## Carex.flacca 0.169329073 0.8306709
## Carex.panicea 1.000000000 0.0000000
## Carlina.vulgaris 1.000000000 0.0000000
## Centaurea.nigra 1.000000000 0.0000000
## Centaurium.erythraea 0.003649635 0.9963504
## Centaurium.littorale 1.000000000 0.0000000
## Centaurium.pulchellum 1.000000000 0.0000000
## Cerastium.fontanum 0.056451613 0.9435484
## Chamaenerion.angustifolium 1.000000000 0.0000000
## Cirriphyllum.piliferum 1.000000000 0.0000000
## Cirsium.arvense 1.000000000 0.0000000
## Cirsium.palustre 1.000000000 0.0000000
## Crepis.capillaris 1.000000000 0.0000000
## Cynosurus.cristatus 0.193103448 0.8068966
## Dactylis.glomerata 1.000000000 0.0000000
## Dactylorhiza.fuchsii 1.000000000 0.0000000
## Danthonia.decumbens 1.000000000 0.0000000
## Daucus.carrota 1.000000000 0.0000000
## Dicranella.spp. 1.000000000 0.0000000
## Dicranum.scoparium 0.213709677 0.7862903
## Epilobium.montanum 1.000000000 0.0000000
## Equisetum.arvense 1.000000000 0.0000000
## Equisteum.variegatum 1.000000000 0.0000000
## Erigeron.acer 1.000000000 0.0000000
## Euphrasia.agg 0.455089820 0.5449102
## Festuca.ovina 1.000000000 0.0000000
## Festuca.rubra 0.490721649 0.5092784
## Festuca.rubra.agg. 0.000000000 1.0000000
## Filipendula.ulmaria 1.000000000 0.0000000
## Fissidens.adianthoides 1.000000000 0.0000000
## Fissidens.dubius 1.000000000 0.0000000
## Fissidens.exilis 1.000000000 0.0000000
## Fragaria.vesca 0.306828812 0.6931712
## Galium.aparine 1.000000000 0.0000000
## Galium.arvense 1.000000000 0.0000000
## Galium.saxatile 1.000000000 0.0000000
## Galium.verum 1.000000000 0.0000000
## Geum.urbanum 1.000000000 0.0000000
## Glechoma.hederacea 1.000000000 0.0000000
## Helicotrichon.spp. 1.000000000 0.0000000
## Heracleum.sphondylium 1.000000000 0.0000000
## Hieracium.spp. 1.000000000 0.0000000
## Holcus.spp. 0.587155963 0.4128440
## Holcus.lanatus 0.093550261 0.9064497
## Holcus.mollis 1.000000000 0.0000000
## Homalothecium.lutescens 1.000000000 0.0000000
## Hylocomium.splendens 0.243085881 0.7569141
## Hypericum.perforatum 0.078740157 0.9212598
## Hypnum.cupressiforme 0.751592357 0.2484076
## Hypnum.imponens 1.000000000 0.0000000
## Hypnum.jutlandicum 0.250000000 0.7500000
## Hypochaeris.radicata 1.000000000 0.0000000
## Kindbergia.praelonga 1.000000000 0.0000000
## Lathyrus.pratensis 1.000000000 0.0000000
## Leontodon.hispidus 1.000000000 0.0000000
## Leontodon.saxatilis 1.000000000 0.0000000
## Leucanthemum.vulgare 0.221038615 0.7789614
## Linum.catharticum 1.000000000 0.0000000
## Lolium.perenne 1.000000000 0.0000000
## Lophocolea.semiteres 1.000000000 0.0000000
## Lotus.corniculatus 0.250860092 0.7491399
## Luzula.multiflora 1.000000000 0.0000000
## Lysimachia.maritima 1.000000000 0.0000000
## Medicago.lupulina 1.000000000 0.0000000
## Myosotis.arvensis 1.000000000 0.0000000
## Ononis.repens 0.058684335 0.9413157
## Oxalis.acetosella 1.000000000 0.0000000
## Pastinaca.sativa 1.000000000 0.0000000
## Pentaglottis.sempervirens 1.000000000 0.0000000
## Pillosella.officinarum 1.000000000 0.0000000
## Plantago.coronopus 1.000000000 0.0000000
## Plantago.lanceolata 0.708229426 0.2917706
## Pleurozium.schreberi 0.597938144 0.4020619
## Poa.annua 1.000000000 0.0000000
## Poa.spp. 1.000000000 0.0000000
## Polytrichum.commune 1.000000000 0.0000000
## Polytrichum.commune.agg. 1.000000000 0.0000000
## Polytrichum.formosum 0.000000000 1.0000000
## Potentilla.reptans 0.688000000 0.3120000
## Prunella.vulgaris 1.000000000 0.0000000
## Pseudoscleropidum.purum 1.000000000 0.0000000
## Pteridium.aquilinum 1.000000000 0.0000000
## Ranunculus.acris 1.000000000 0.0000000
## Ranunculus.repens 1.000000000 0.0000000
## Reseda.lutea 1.000000000 0.0000000
## Rhinanthus.minor 1.000000000 0.0000000
## Rhizomnium.punctatum 1.000000000 0.0000000
## Rhytidadelphus.squarrosus 1.000000000 0.0000000
## Rhytidadelphus.triquetris 1.000000000 0.0000000
## Rubus.fruticosus 1.000000000 0.0000000
## Sanguisorba.minor.spp.minor 1.000000000 0.0000000
## Saniona.uncinata 1.000000000 0.0000000
## Sedum.anglicum 1.000000000 0.0000000
## Senecio.jacobaea 1.000000000 0.0000000
## Senecio.vulgaris 1.000000000 0.0000000
## Sonchus.arvensis 1.000000000 0.0000000
## Stachys.sylvatica 1.000000000 0.0000000
## Stellaria.apetala 1.000000000 0.0000000
## Taraxacum.agg. 1.000000000 0.0000000
## Thuidium.tamariscinum 1.000000000 0.0000000
## Thymus.polytrichus 1.000000000 0.0000000
## Trichostomum.crispulum 1.000000000 0.0000000
## Trifolium.campestre 1.000000000 0.0000000
## Trifolium.dubium 1.000000000 0.0000000
## Trifolium.pratense 1.000000000 0.0000000
## Trifolium.repens 1.000000000 0.0000000
## Trisetum.flavescens 0.002080300 0.9979197
## Tussilago.farfara 1.000000000 0.0000000
## Urtica.diocia 1.000000000 0.0000000
## Veronica.officinalis 1.000000000 0.0000000
## Vicia.sativa 1.000000000 0.0000000
## Viola.riviniana 1.000000000 0.0000000
## Weissia.controversa 1.000000000 0.0000000
## Zygodon.stirtonii 1.000000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 6.303616e-02 0.3243993
## Agrostis.canina 2.564103e-02 0.0000000
## Alchemilla.mollis 2.564103e-02 0.0000000
## Alopercus.pratensis 2.564103e-02 0.0000000
## Angelica.sylvestris 5.128205e-02 0.0000000
## Anthoxanthum.odoratum 5.115033e-02 0.3005137
## Anthyllis.vulneraria 1.282051e-01 0.0000000
## Aphanes.arvensis 5.619951e-03 0.4452055
## Arrhenatherum.elatius 2.051282e-01 0.0000000
## Atrichum.undulatum 5.128205e-02 0.0000000
## Avenula.pratensis 2.564103e-02 0.0000000
## Bellis.perennis 1.792475e-01 0.1822430
## Betula.pubescens 2.564103e-02 0.0000000
## Blackstonia.perfoliata 0.000000e+00 0.5000000
## Brachythecium.albicans 2.564103e-02 0.0000000
## Brachythecium.glareosum 2.564103e-02 0.0000000
## Brachythecium.mildeanum 1.025641e-01 0.0000000
## Brachythecium.rutabulum 1.538462e-01 0.0000000
## Briza.media 7.692308e-02 0.0000000
## Bromus.hordeaceus 2.564103e-02 0.0000000
## Bryum.c.f..caespiticium 2.564103e-02 0.0000000
## Bryum.c.f..pallescens 7.692308e-02 0.0000000
## Bryum.capillare 0.000000e+00 0.5000000
## Bryum.spp. 7.692308e-02 0.0000000
## Calliergonella.cupsidata 3.846154e-01 0.0000000
## Calypogeia.arguta 9.615385e-02 0.2321429
## Campanula.rotundifolia 2.564103e-02 0.0000000
## Carex.distans 5.128205e-02 0.0000000
## Carex.flacca 2.605063e-02 0.4153355
## Carex.panicea 2.564103e-02 0.0000000
## Carlina.vulgaris 2.564103e-01 0.0000000
## Centaurea.nigra 5.128205e-02 0.0000000
## Centaurium.erythraea 9.358039e-05 0.4981752
## Centaurium.littorale 1.025641e-01 0.0000000
## Centaurium.pulchellum 2.564103e-02 0.0000000
## Cerastium.fontanum 8.684864e-03 0.4717742
## Chamaenerion.angustifolium 2.564103e-02 0.0000000
## Cirriphyllum.piliferum 2.564103e-02 0.0000000
## Cirsium.arvense 7.692308e-02 0.0000000
## Cirsium.palustre 5.128205e-02 0.0000000
## Crepis.capillaris 5.128205e-02 0.0000000
## Cynosurus.cristatus 9.902741e-03 0.4034483
## Dactylis.glomerata 1.538462e-01 0.0000000
## Dactylorhiza.fuchsii 5.128205e-02 0.0000000
## Danthonia.decumbens 2.564103e-02 0.0000000
## Daucus.carrota 5.128205e-02 0.0000000
## Dicranella.spp. 2.564103e-02 0.0000000
## Dicranum.scoparium 2.191894e-02 0.3931452
## Epilobium.montanum 7.692308e-02 0.0000000
## Equisetum.arvense 7.692308e-02 0.0000000
## Equisteum.variegatum 2.564103e-02 0.0000000
## Erigeron.acer 5.128205e-02 0.0000000
## Euphrasia.agg 1.166897e-01 0.2724551
## Festuca.ovina 1.794872e-01 0.0000000
## Festuca.rubra 1.761565e-01 0.2546392
## Festuca.rubra.agg. 0.000000e+00 0.5000000
## Filipendula.ulmaria 7.692308e-02 0.0000000
## Fissidens.adianthoides 2.564103e-02 0.0000000
## Fissidens.dubius 5.128205e-02 0.0000000
## Fissidens.exilis 2.564103e-02 0.0000000
## Fragaria.vesca 3.933703e-02 0.3465856
## Galium.aparine 2.564103e-02 0.0000000
## Galium.arvense 2.564103e-02 0.0000000
## Galium.saxatile 2.564103e-02 0.0000000
## Galium.verum 1.025641e-01 0.0000000
## Geum.urbanum 2.564103e-02 0.0000000
## Glechoma.hederacea 2.564103e-02 0.0000000
## Helicotrichon.spp. 2.564103e-02 0.0000000
## Heracleum.sphondylium 7.692308e-02 0.0000000
## Hieracium.spp. 2.564103e-02 0.0000000
## Holcus.spp. 3.011056e-01 0.2064220
## Holcus.lanatus 2.638597e-02 0.4532249
## Holcus.mollis 1.538462e-01 0.0000000
## Homalothecium.lutescens 5.128205e-02 0.0000000
## Hylocomium.splendens 3.739783e-02 0.3784571
## Hypericum.perforatum 1.009489e-02 0.4606299
## Hypnum.cupressiforme 1.734444e-01 0.1242038
## Hypnum.imponens 2.564103e-02 0.0000000
## Hypnum.jutlandicum 1.282051e-02 0.3750000
## Hypochaeris.radicata 2.564103e-02 0.0000000
## Kindbergia.praelonga 1.538462e-01 0.0000000
## Lathyrus.pratensis 7.692308e-02 0.0000000
## Leontodon.hispidus 1.282051e-01 0.0000000
## Leontodon.saxatilis 2.564103e-02 0.0000000
## Leucanthemum.vulgare 7.367954e-02 0.3894807
## Linum.catharticum 1.282051e-01 0.0000000
## Lolium.perenne 1.025641e-01 0.0000000
## Lophocolea.semiteres 2.564103e-02 0.0000000
## Lotus.corniculatus 1.029170e-01 0.7491399
## Luzula.multiflora 2.564103e-02 0.0000000
## Lysimachia.maritima 5.128205e-02 0.0000000
## Medicago.lupulina 1.282051e-01 0.0000000
## Myosotis.arvensis 1.282051e-01 0.0000000
## Ononis.repens 1.053309e-02 0.4706578
## Oxalis.acetosella 2.564103e-02 0.0000000
## Pastinaca.sativa 2.564103e-02 0.0000000
## Pentaglottis.sempervirens 2.564103e-02 0.0000000
## Pillosella.officinarum 3.076923e-01 0.0000000
## Plantago.coronopus 1.025641e-01 0.0000000
## Plantago.lanceolata 2.179167e-01 0.1458853
## Pleurozium.schreberi 4.599524e-02 0.2010309
## Poa.annua 7.692308e-02 0.0000000
## Poa.spp. 2.564103e-02 0.0000000
## Polytrichum.commune 2.564103e-02 0.0000000
## Polytrichum.commune.agg. 2.564103e-02 0.0000000
## Polytrichum.formosum 0.000000e+00 0.5000000
## Potentilla.reptans 5.292308e-02 0.1560000
## Prunella.vulgaris 1.282051e-01 0.0000000
## Pseudoscleropidum.purum 2.051282e-01 0.0000000
## Pteridium.aquilinum 7.692308e-02 0.0000000
## Ranunculus.acris 2.564103e-02 0.0000000
## Ranunculus.repens 7.692308e-02 0.0000000
## Reseda.lutea 2.564103e-02 0.0000000
## Rhinanthus.minor 2.564103e-02 0.0000000
## Rhizomnium.punctatum 2.564103e-02 0.0000000
## Rhytidadelphus.squarrosus 3.333333e-01 0.0000000
## Rhytidadelphus.triquetris 5.128205e-02 0.0000000
## Rubus.fruticosus 5.128205e-02 0.0000000
## Sanguisorba.minor.spp.minor 5.128205e-02 0.0000000
## Saniona.uncinata 5.128205e-02 0.0000000
## Sedum.anglicum 2.564103e-02 0.0000000
## Senecio.jacobaea 5.128205e-02 0.0000000
## Senecio.vulgaris 2.564103e-02 0.0000000
## Sonchus.arvensis 2.564103e-02 0.0000000
## Stachys.sylvatica 5.128205e-02 0.0000000
## Stellaria.apetala 2.564103e-02 0.0000000
## Taraxacum.agg. 2.820513e-01 0.0000000
## Thuidium.tamariscinum 7.692308e-02 0.0000000
## Thymus.polytrichus 2.051282e-01 0.0000000
## Trichostomum.crispulum 1.538462e-01 0.0000000
## Trifolium.campestre 1.794872e-01 0.0000000
## Trifolium.dubium 5.128205e-02 0.0000000
## Trifolium.pratense 1.025641e-01 0.0000000
## Trifolium.repens 1.282051e-01 0.0000000
## Trisetum.flavescens 1.600230e-04 0.4989599
## Tussilago.farfara 7.692308e-02 0.0000000
## Urtica.diocia 1.025641e-01 0.0000000
## Veronica.officinalis 2.564103e-02 0.0000000
## Vicia.sativa 2.564103e-02 0.0000000
## Viola.riviniana 2.564103e-02 0.0000000
## Weissia.controversa 2.564103e-02 0.0000000
## Zygodon.stirtonii 2.564103e-02 0.0000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 2 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 2
## Anthyllis.vulneraria Aphanes.arvensis
## 1 2
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 2
## Betula.pubescens Blackstonia.perfoliata
## 1 2
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 2 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 2
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 2 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 2 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 2
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 2
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 2 1
## Festuca.rubra Festuca.rubra.agg.
## 2 2
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 2 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 2
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 2 2
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 2 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 2 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 2 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 2
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 2 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 2
## Potentilla.reptans Prunella.vulgaris
## 2 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 1 1
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 2 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.32439926 0.02564103
## Alchemilla.mollis Alopercus.pratensis
## 0.02564103 0.02564103
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.05128205 0.30051370
## Anthyllis.vulneraria Aphanes.arvensis
## 0.12820513 0.44520548
## Arrhenatherum.elatius Atrichum.undulatum
## 0.20512821 0.05128205
## Avenula.pratensis Bellis.perennis
## 0.02564103 0.18224299
## Betula.pubescens Blackstonia.perfoliata
## 0.02564103 0.50000000
## Brachythecium.albicans Brachythecium.glareosum
## 0.02564103 0.02564103
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.10256410 0.15384615
## Briza.media Bromus.hordeaceus
## 0.07692308 0.02564103
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.02564103 0.07692308
## Bryum.capillare Bryum.spp.
## 0.50000000 0.07692308
## Calliergonella.cupsidata Calypogeia.arguta
## 0.38461538 0.23214286
## Campanula.rotundifolia Carex.distans
## 0.02564103 0.05128205
## Carex.flacca Carex.panicea
## 0.41533546 0.02564103
## Carlina.vulgaris Centaurea.nigra
## 0.25641026 0.05128205
## Centaurium.erythraea Centaurium.littorale
## 0.49817518 0.10256410
## Centaurium.pulchellum Cerastium.fontanum
## 0.02564103 0.47177419
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.02564103 0.02564103
## Cirsium.arvense Cirsium.palustre
## 0.07692308 0.05128205
## Crepis.capillaris Cynosurus.cristatus
## 0.05128205 0.40344828
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.15384615 0.05128205
## Danthonia.decumbens Daucus.carrota
## 0.02564103 0.05128205
## Dicranella.spp. Dicranum.scoparium
## 0.02564103 0.39314516
## Epilobium.montanum Equisetum.arvense
## 0.07692308 0.07692308
## Equisteum.variegatum Erigeron.acer
## 0.02564103 0.05128205
## Euphrasia.agg Festuca.ovina
## 0.27245509 0.17948718
## Festuca.rubra Festuca.rubra.agg.
## 0.25463918 0.50000000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.07692308 0.02564103
## Fissidens.dubius Fissidens.exilis
## 0.05128205 0.02564103
## Fragaria.vesca Galium.aparine
## 0.34658559 0.02564103
## Galium.arvense Galium.saxatile
## 0.02564103 0.02564103
## Galium.verum Geum.urbanum
## 0.10256410 0.02564103
## Glechoma.hederacea Helicotrichon.spp.
## 0.02564103 0.02564103
## Heracleum.sphondylium Hieracium.spp.
## 0.07692308 0.02564103
## Holcus.spp. Holcus.lanatus
## 0.30110562 0.45322487
## Holcus.mollis Homalothecium.lutescens
## 0.15384615 0.05128205
## Hylocomium.splendens Hypericum.perforatum
## 0.37845706 0.46062992
## Hypnum.cupressiforme Hypnum.imponens
## 0.17344439 0.02564103
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.37500000 0.02564103
## Kindbergia.praelonga Lathyrus.pratensis
## 0.15384615 0.07692308
## Leontodon.hispidus Leontodon.saxatilis
## 0.12820513 0.02564103
## Leucanthemum.vulgare Linum.catharticum
## 0.38948069 0.12820513
## Lolium.perenne Lophocolea.semiteres
## 0.10256410 0.02564103
## Lotus.corniculatus Luzula.multiflora
## 0.74913991 0.02564103
## Lysimachia.maritima Medicago.lupulina
## 0.05128205 0.12820513
## Myosotis.arvensis Ononis.repens
## 0.12820513 0.47065783
## Oxalis.acetosella Pastinaca.sativa
## 0.02564103 0.02564103
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.02564103 0.30769231
## Plantago.coronopus Plantago.lanceolata
## 0.10256410 0.21791675
## Pleurozium.schreberi Poa.annua
## 0.20103093 0.07692308
## Poa.spp. Polytrichum.commune
## 0.02564103 0.02564103
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.02564103 0.50000000
## Potentilla.reptans Prunella.vulgaris
## 0.15600000 0.12820513
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.20512821 0.07692308
## Ranunculus.acris Ranunculus.repens
## 0.02564103 0.07692308
## Reseda.lutea Rhinanthus.minor
## 0.02564103 0.02564103
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.02564103 0.33333333
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.05128205 0.05128205
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.05128205 0.05128205
## Sedum.anglicum Senecio.jacobaea
## 0.02564103 0.05128205
## Senecio.vulgaris Sonchus.arvensis
## 0.02564103 0.02564103
## Stachys.sylvatica Stellaria.apetala
## 0.05128205 0.02564103
## Taraxacum.agg. Thuidium.tamariscinum
## 0.28205128 0.07692308
## Thymus.polytrichus Trichostomum.crispulum
## 0.20512821 0.15384615
## Trifolium.campestre Trifolium.dubium
## 0.17948718 0.05128205
## Trifolium.pratense Trifolium.repens
## 0.10256410 0.12820513
## Trisetum.flavescens Tussilago.farfara
## 0.49895985 0.07692308
## Urtica.diocia Veronica.officinalis
## 0.10256410 0.02564103
## Vicia.sativa Viola.riviniana
## 0.02564103 0.02564103
## Weissia.controversa Zygodon.stirtonii
## 0.02564103 0.02564103
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.197 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 0.196
## Anthyllis.vulneraria Aphanes.arvensis
## 0.953 0.080
## Arrhenatherum.elatius Atrichum.undulatum
## 0.887 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 1.000
## Betula.pubescens Blackstonia.perfoliata
## 1.000 0.063
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 0.045 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.554 0.300
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.105 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.885 1.000
## Centaurium.erythraea Centaurium.littorale
## 0.046 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.061
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 0.185
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.909 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 0.157
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.767 0.926
## Festuca.rubra Festuca.rubra.agg.
## 0.953 0.050
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 0.237 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 0.912 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.835 0.102
## Holcus.mollis Homalothecium.lutescens
## 0.907 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.222 0.058
## Hypnum.cupressiforme Hypnum.imponens
## 1.000 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.085 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.195 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.054 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.075
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.662
## Plantago.coronopus Plantago.lanceolata
## 0.948 0.963
## Pleurozium.schreberi Poa.annua
## 0.178 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 0.045
## Potentilla.reptans Prunella.vulgaris
## 0.174 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.914 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.771
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.816 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.890 1.000
## Trifolium.campestre Trifolium.dubium
## 0.915 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 1.000
## Trisetum.flavescens Tussilago.farfara
## 0.060 1.000
## Urtica.diocia Veronica.officinalis
## 0.960 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Blackstonia perfoliata, Bryum capillare, Festuca rubra agg. and Polytrichum formosum all #have indval scores of 0.5, and they all have similar p values. These four species are all #reported as indicator species for Phengite.
clustPigeonite <-cut(PlantChemistry1$Pigeonite, 5, labels=FALSE)
PigeoniteIndval <- indval(as.matrix(PlantSpecies1), clustPigeonite, type= "long")
gr <- PigeoniteIndval$maxcls[PigeoniteIndval$pval<=0.05]
iv <- PigeoniteIndval$indcls[PigeoniteIndval$pval<=0.05]
pv <- PigeoniteIndval$pval[PigeoniteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[PigeoniteIndval$pval<=0.05]
PigeoniteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
PigeoniteIndvalsummary <- PigeoniteIndvalsummary [order
(PigeoniteIndvalsummary$group, -PigeoniteIndvalsummary$indval),]
print(PigeoniteIndvalsummary)
## group indval pvalue freq
## Trifolium.campestre 2 0.7552287 0.001 2
## Cerastium.fontanum 2 0.4571429 0.019 1
summary(indval(as.matrix(PlantSpecies1), clustPigeonite))
## cluster indicator_value probability
## Trifolium.campestre 2 0.7552 0.002
## Cerastium.fontanum 2 0.4571 0.022
##
## Sum of probabilities = 113.639
##
## Sum of Indicator Values = 15.38
##
## Sum of Significant Indicator Values = 1.21
##
## Number of Significant Indicators = 2
##
## Significant Indicator Distribution
##
## 2
## 2
print(indval(as.matrix(PlantSpecies1), clustPigeonite))
## $relfrq
## 1 5
## Agrostis.spp. 0.22222222 0.0
## Agrostis.canina 0.02777778 0.0
## Alchemilla.mollis 0.02777778 0.0
## Alopercus.pratensis 0.02777778 0.0
## Angelica.sylvestris 0.05555556 0.0
## Anthoxanthum.odoratum 0.16666667 0.0
## Anthyllis.vulneraria 0.11111111 0.2
## Aphanes.arvensis 0.05555556 0.2
## Arrhenatherum.elatius 0.19444444 0.2
## Atrichum.undulatum 0.05555556 0.0
## Avenula.pratensis 0.02777778 0.0
## Bellis.perennis 0.27777778 0.4
## Betula.pubescens 0.02777778 0.0
## Blackstonia.perfoliata 0.02777778 0.0
## Brachythecium.albicans 0.00000000 0.2
## Brachythecium.glareosum 0.02777778 0.0
## Brachythecium.mildeanum 0.11111111 0.0
## Brachythecium.rutabulum 0.13888889 0.2
## Briza.media 0.05555556 0.2
## Bromus.hordeaceus 0.02777778 0.0
## Bryum.c.f..caespiticium 0.02777778 0.0
## Bryum.c.f..pallescens 0.05555556 0.2
## Bryum.capillare 0.02777778 0.0
## Bryum.spp. 0.08333333 0.0
## Calliergonella.cupsidata 0.33333333 0.6
## Calypogeia.arguta 0.22222222 0.0
## Campanula.rotundifolia 0.02777778 0.0
## Carex.distans 0.05555556 0.0
## Carex.flacca 0.16666667 0.2
## Carex.panicea 0.02777778 0.0
## Carlina.vulgaris 0.25000000 0.2
## Centaurea.nigra 0.05555556 0.0
## Centaurium.erythraea 0.05555556 0.0
## Centaurium.littorale 0.11111111 0.0
## Centaurium.pulchellum 0.02777778 0.0
## Cerastium.fontanum 0.11111111 0.6
## Chamaenerion.angustifolium 0.02777778 0.0
## Cirriphyllum.piliferum 0.02777778 0.0
## Cirsium.arvense 0.08333333 0.0
## Cirsium.palustre 0.05555556 0.0
## Crepis.capillaris 0.05555556 0.0
## Cynosurus.cristatus 0.05555556 0.2
## Dactylis.glomerata 0.16666667 0.0
## Dactylorhiza.fuchsii 0.05555556 0.0
## Danthonia.decumbens 0.02777778 0.0
## Daucus.carrota 0.05555556 0.0
## Dicranella.spp. 0.02777778 0.0
## Dicranum.scoparium 0.13888889 0.0
## Epilobium.montanum 0.08333333 0.0
## Equisetum.arvense 0.08333333 0.0
## Equisteum.variegatum 0.02777778 0.0
## Erigeron.acer 0.05555556 0.0
## Euphrasia.agg 0.27777778 0.2
## Festuca.ovina 0.16666667 0.2
## Festuca.rubra 0.33333333 0.6
## Festuca.rubra.agg. 0.02777778 0.0
## Filipendula.ulmaria 0.08333333 0.0
## Fissidens.adianthoides 0.02777778 0.0
## Fissidens.dubius 0.05555556 0.0
## Fissidens.exilis 0.02777778 0.0
## Fragaria.vesca 0.16666667 0.0
## Galium.aparine 0.02777778 0.0
## Galium.arvense 0.02777778 0.0
## Galium.saxatile 0.02777778 0.0
## Galium.verum 0.08333333 0.2
## Geum.urbanum 0.02777778 0.0
## Glechoma.hederacea 0.02777778 0.0
## Helicotrichon.spp. 0.02777778 0.0
## Heracleum.sphondylium 0.08333333 0.0
## Hieracium.spp. 0.02777778 0.0
## Holcus.spp. 0.47222222 0.8
## Holcus.lanatus 0.27777778 0.4
## Holcus.mollis 0.16666667 0.0
## Homalothecium.lutescens 0.05555556 0.0
## Hylocomium.splendens 0.19444444 0.0
## Hypericum.perforatum 0.16666667 0.0
## Hypnum.cupressiforme 0.25000000 0.2
## Hypnum.imponens 0.02777778 0.0
## Hypnum.jutlandicum 0.08333333 0.0
## Hypochaeris.radicata 0.00000000 0.2
## Kindbergia.praelonga 0.16666667 0.0
## Lathyrus.pratensis 0.05555556 0.2
## Leontodon.hispidus 0.11111111 0.2
## Leontodon.saxatilis 0.00000000 0.2
## Leucanthemum.vulgare 0.33333333 0.4
## Linum.catharticum 0.11111111 0.2
## Lolium.perenne 0.08333333 0.2
## Lophocolea.semiteres 0.02777778 0.0
## Lotus.corniculatus 0.44444444 0.4
## Luzula.multiflora 0.02777778 0.0
## Lysimachia.maritima 0.05555556 0.0
## Medicago.lupulina 0.08333333 0.4
## Myosotis.arvensis 0.13888889 0.0
## Ononis.repens 0.22222222 0.0
## Oxalis.acetosella 0.02777778 0.0
## Pastinaca.sativa 0.02777778 0.0
## Pentaglottis.sempervirens 0.02777778 0.0
## Pillosella.officinarum 0.27777778 0.4
## Plantago.coronopus 0.11111111 0.0
## Plantago.lanceolata 0.30555556 0.4
## Pleurozium.schreberi 0.11111111 0.0
## Poa.annua 0.08333333 0.0
## Poa.spp. 0.02777778 0.0
## Polytrichum.commune 0.02777778 0.0
## Polytrichum.commune.agg. 0.02777778 0.0
## Polytrichum.formosum 0.02777778 0.0
## Potentilla.reptans 0.08333333 0.2
## Prunella.vulgaris 0.11111111 0.2
## Pseudoscleropidum.purum 0.22222222 0.0
## Pteridium.aquilinum 0.08333333 0.0
## Ranunculus.acris 0.02777778 0.0
## Ranunculus.repens 0.05555556 0.2
## Reseda.lutea 0.02777778 0.0
## Rhinanthus.minor 0.02777778 0.0
## Rhizomnium.punctatum 0.02777778 0.0
## Rhytidadelphus.squarrosus 0.33333333 0.2
## Rhytidadelphus.triquetris 0.05555556 0.0
## Rubus.fruticosus 0.05555556 0.0
## Sanguisorba.minor.spp.minor 0.02777778 0.2
## Saniona.uncinata 0.05555556 0.0
## Sedum.anglicum 0.02777778 0.0
## Senecio.jacobaea 0.05555556 0.0
## Senecio.vulgaris 0.00000000 0.2
## Sonchus.arvensis 0.02777778 0.0
## Stachys.sylvatica 0.05555556 0.0
## Stellaria.apetala 0.00000000 0.2
## Taraxacum.agg. 0.27777778 0.2
## Thuidium.tamariscinum 0.08333333 0.0
## Thymus.polytrichus 0.19444444 0.2
## Trichostomum.crispulum 0.13888889 0.2
## Trifolium.campestre 0.08333333 0.8
## Trifolium.dubium 0.02777778 0.2
## Trifolium.pratense 0.08333333 0.2
## Trifolium.repens 0.08333333 0.4
## Trisetum.flavescens 0.11111111 0.0
## Tussilago.farfara 0.08333333 0.0
## Urtica.diocia 0.11111111 0.0
## Veronica.officinalis 0.02777778 0.0
## Vicia.sativa 0.02777778 0.0
## Viola.riviniana 0.02777778 0.0
## Weissia.controversa 0.02777778 0.0
## Zygodon.stirtonii 0.02777778 0.0
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.00000000
## Agrostis.canina 1.00000000 0.00000000
## Alchemilla.mollis 1.00000000 0.00000000
## Alopercus.pratensis 1.00000000 0.00000000
## Angelica.sylvestris 1.00000000 0.00000000
## Anthoxanthum.odoratum 1.00000000 0.00000000
## Anthyllis.vulneraria 0.93554163 0.06445837
## Aphanes.arvensis 0.68965517 0.31034483
## Arrhenatherum.elatius 0.90027701 0.09972299
## Atrichum.undulatum 1.00000000 0.00000000
## Avenula.pratensis 1.00000000 0.00000000
## Bellis.perennis 0.45454545 0.54545455
## Betula.pubescens 1.00000000 0.00000000
## Blackstonia.perfoliata 1.00000000 0.00000000
## Brachythecium.albicans 0.00000000 1.00000000
## Brachythecium.glareosum 1.00000000 0.00000000
## Brachythecium.mildeanum 1.00000000 0.00000000
## Brachythecium.rutabulum 0.18796992 0.81203008
## Briza.media 0.69259962 0.30740038
## Bromus.hordeaceus 1.00000000 0.00000000
## Bryum.c.f..caespiticium 1.00000000 0.00000000
## Bryum.c.f..pallescens 0.12195122 0.87804878
## Bryum.capillare 1.00000000 0.00000000
## Bryum.spp. 1.00000000 0.00000000
## Calliergonella.cupsidata 0.40983607 0.59016393
## Calypogeia.arguta 1.00000000 0.00000000
## Campanula.rotundifolia 1.00000000 0.00000000
## Carex.distans 1.00000000 0.00000000
## Carex.flacca 0.08377519 0.91622481
## Carex.panicea 1.00000000 0.00000000
## Carlina.vulgaris 0.28776978 0.71223022
## Centaurea.nigra 1.00000000 0.00000000
## Centaurium.erythraea 1.00000000 0.00000000
## Centaurium.littorale 1.00000000 0.00000000
## Centaurium.pulchellum 1.00000000 0.00000000
## Cerastium.fontanum 0.23809524 0.76190476
## Chamaenerion.angustifolium 1.00000000 0.00000000
## Cirriphyllum.piliferum 1.00000000 0.00000000
## Cirsium.arvense 1.00000000 0.00000000
## Cirsium.palustre 1.00000000 0.00000000
## Crepis.capillaris 1.00000000 0.00000000
## Cynosurus.cristatus 0.07384469 0.92615531
## Dactylis.glomerata 1.00000000 0.00000000
## Dactylorhiza.fuchsii 1.00000000 0.00000000
## Danthonia.decumbens 1.00000000 0.00000000
## Daucus.carrota 1.00000000 0.00000000
## Dicranella.spp. 1.00000000 0.00000000
## Dicranum.scoparium 1.00000000 0.00000000
## Epilobium.montanum 1.00000000 0.00000000
## Equisetum.arvense 1.00000000 0.00000000
## Equisteum.variegatum 1.00000000 0.00000000
## Erigeron.acer 1.00000000 0.00000000
## Euphrasia.agg 0.47683924 0.52316076
## Festuca.ovina 0.21610030 0.78389970
## Festuca.rubra 0.27710843 0.72289157
## Festuca.rubra.agg. 1.00000000 0.00000000
## Filipendula.ulmaria 1.00000000 0.00000000
## Fissidens.adianthoides 1.00000000 0.00000000
## Fissidens.dubius 1.00000000 0.00000000
## Fissidens.exilis 1.00000000 0.00000000
## Fragaria.vesca 1.00000000 0.00000000
## Galium.aparine 1.00000000 0.00000000
## Galium.arvense 1.00000000 0.00000000
## Galium.saxatile 1.00000000 0.00000000
## Galium.verum 0.12684695 0.87315305
## Geum.urbanum 1.00000000 0.00000000
## Glechoma.hederacea 1.00000000 0.00000000
## Helicotrichon.spp. 1.00000000 0.00000000
## Heracleum.sphondylium 1.00000000 0.00000000
## Hieracium.spp. 1.00000000 0.00000000
## Holcus.spp. 0.38411246 0.61588754
## Holcus.lanatus 0.49414520 0.50585480
## Holcus.mollis 1.00000000 0.00000000
## Homalothecium.lutescens 1.00000000 0.00000000
## Hylocomium.splendens 1.00000000 0.00000000
## Hypericum.perforatum 1.00000000 0.00000000
## Hypnum.cupressiforme 0.55555556 0.44444444
## Hypnum.imponens 1.00000000 0.00000000
## Hypnum.jutlandicum 1.00000000 0.00000000
## Hypochaeris.radicata 0.00000000 1.00000000
## Kindbergia.praelonga 1.00000000 0.00000000
## Lathyrus.pratensis 0.13698630 0.86301370
## Leontodon.hispidus 0.41251133 0.58748867
## Leontodon.saxatilis 0.00000000 1.00000000
## Leucanthemum.vulgare 0.47592385 0.52407615
## Linum.catharticum 0.29411765 0.70588235
## Lolium.perenne 0.86466165 0.13533835
## Lophocolea.semiteres 1.00000000 0.00000000
## Lotus.corniculatus 0.56352839 0.43647161
## Luzula.multiflora 1.00000000 0.00000000
## Lysimachia.maritima 1.00000000 0.00000000
## Medicago.lupulina 0.69620253 0.30379747
## Myosotis.arvensis 1.00000000 0.00000000
## Ononis.repens 1.00000000 0.00000000
## Oxalis.acetosella 1.00000000 0.00000000
## Pastinaca.sativa 1.00000000 0.00000000
## Pentaglottis.sempervirens 1.00000000 0.00000000
## Pillosella.officinarum 0.55605381 0.44394619
## Plantago.coronopus 1.00000000 0.00000000
## Plantago.lanceolata 0.90851334 0.09148666
## Pleurozium.schreberi 1.00000000 0.00000000
## Poa.annua 1.00000000 0.00000000
## Poa.spp. 1.00000000 0.00000000
## Polytrichum.commune 1.00000000 0.00000000
## Polytrichum.commune.agg. 1.00000000 0.00000000
## Polytrichum.formosum 1.00000000 0.00000000
## Potentilla.reptans 0.02560351 0.97439649
## Prunella.vulgaris 0.40983607 0.59016393
## Pseudoscleropidum.purum 1.00000000 0.00000000
## Pteridium.aquilinum 1.00000000 0.00000000
## Ranunculus.acris 1.00000000 0.00000000
## Ranunculus.repens 0.79545455 0.20454545
## Reseda.lutea 1.00000000 0.00000000
## Rhinanthus.minor 1.00000000 0.00000000
## Rhizomnium.punctatum 1.00000000 0.00000000
## Rhytidadelphus.squarrosus 0.73529412 0.26470588
## Rhytidadelphus.triquetris 1.00000000 0.00000000
## Rubus.fruticosus 1.00000000 0.00000000
## Sanguisorba.minor.spp.minor 0.03924647 0.96075353
## Saniona.uncinata 1.00000000 0.00000000
## Sedum.anglicum 1.00000000 0.00000000
## Senecio.jacobaea 1.00000000 0.00000000
## Senecio.vulgaris 0.00000000 1.00000000
## Sonchus.arvensis 1.00000000 0.00000000
## Stachys.sylvatica 1.00000000 0.00000000
## Stellaria.apetala 0.00000000 1.00000000
## Taraxacum.agg. 0.60439560 0.39560440
## Thuidium.tamariscinum 1.00000000 0.00000000
## Thymus.polytrichus 0.25759674 0.74240326
## Trichostomum.crispulum 0.49295775 0.50704225
## Trifolium.campestre 0.05596418 0.94403582
## Trifolium.dubium 0.09187169 0.90812831
## Trifolium.pratense 0.65217391 0.34782609
## Trifolium.repens 0.23059618 0.76940382
## Trisetum.flavescens 1.00000000 0.00000000
## Tussilago.farfara 1.00000000 0.00000000
## Urtica.diocia 1.00000000 0.00000000
## Veronica.officinalis 1.00000000 0.00000000
## Vicia.sativa 1.00000000 0.00000000
## Viola.riviniana 1.00000000 0.00000000
## Weissia.controversa 1.00000000 0.00000000
## Zygodon.stirtonii 1.00000000 0.00000000
##
## $indval
## 1 5
## Agrostis.spp. 0.222222222 0.00000000
## Agrostis.canina 0.027777778 0.00000000
## Alchemilla.mollis 0.027777778 0.00000000
## Alopercus.pratensis 0.027777778 0.00000000
## Angelica.sylvestris 0.055555556 0.00000000
## Anthoxanthum.odoratum 0.166666667 0.00000000
## Anthyllis.vulneraria 0.103949070 0.01289167
## Aphanes.arvensis 0.038314176 0.06206897
## Arrhenatherum.elatius 0.175053863 0.01994460
## Atrichum.undulatum 0.055555556 0.00000000
## Avenula.pratensis 0.027777778 0.00000000
## Bellis.perennis 0.126262626 0.21818182
## Betula.pubescens 0.027777778 0.00000000
## Blackstonia.perfoliata 0.027777778 0.00000000
## Brachythecium.albicans 0.000000000 0.20000000
## Brachythecium.glareosum 0.027777778 0.00000000
## Brachythecium.mildeanum 0.111111111 0.00000000
## Brachythecium.rutabulum 0.026106934 0.16240602
## Briza.media 0.038477757 0.06148008
## Bromus.hordeaceus 0.027777778 0.00000000
## Bryum.c.f..caespiticium 0.027777778 0.00000000
## Bryum.c.f..pallescens 0.006775068 0.17560976
## Bryum.capillare 0.027777778 0.00000000
## Bryum.spp. 0.083333333 0.00000000
## Calliergonella.cupsidata 0.136612022 0.35409836
## Calypogeia.arguta 0.222222222 0.00000000
## Campanula.rotundifolia 0.027777778 0.00000000
## Carex.distans 0.055555556 0.00000000
## Carex.flacca 0.013962531 0.18324496
## Carex.panicea 0.027777778 0.00000000
## Carlina.vulgaris 0.071942446 0.14244604
## Centaurea.nigra 0.055555556 0.00000000
## Centaurium.erythraea 0.055555556 0.00000000
## Centaurium.littorale 0.111111111 0.00000000
## Centaurium.pulchellum 0.027777778 0.00000000
## Cerastium.fontanum 0.026455026 0.45714286
## Chamaenerion.angustifolium 0.027777778 0.00000000
## Cirriphyllum.piliferum 0.027777778 0.00000000
## Cirsium.arvense 0.083333333 0.00000000
## Cirsium.palustre 0.055555556 0.00000000
## Crepis.capillaris 0.055555556 0.00000000
## Cynosurus.cristatus 0.004102483 0.18523106
## Dactylis.glomerata 0.166666667 0.00000000
## Dactylorhiza.fuchsii 0.055555556 0.00000000
## Danthonia.decumbens 0.027777778 0.00000000
## Daucus.carrota 0.055555556 0.00000000
## Dicranella.spp. 0.027777778 0.00000000
## Dicranum.scoparium 0.138888889 0.00000000
## Epilobium.montanum 0.083333333 0.00000000
## Equisetum.arvense 0.083333333 0.00000000
## Equisteum.variegatum 0.027777778 0.00000000
## Erigeron.acer 0.055555556 0.00000000
## Euphrasia.agg 0.132455344 0.10463215
## Festuca.ovina 0.036016716 0.15677994
## Festuca.rubra 0.092369478 0.43373494
## Festuca.rubra.agg. 0.027777778 0.00000000
## Filipendula.ulmaria 0.083333333 0.00000000
## Fissidens.adianthoides 0.027777778 0.00000000
## Fissidens.dubius 0.055555556 0.00000000
## Fissidens.exilis 0.027777778 0.00000000
## Fragaria.vesca 0.166666667 0.00000000
## Galium.aparine 0.027777778 0.00000000
## Galium.arvense 0.027777778 0.00000000
## Galium.saxatile 0.027777778 0.00000000
## Galium.verum 0.010570579 0.17463061
## Geum.urbanum 0.027777778 0.00000000
## Glechoma.hederacea 0.027777778 0.00000000
## Helicotrichon.spp. 0.027777778 0.00000000
## Heracleum.sphondylium 0.083333333 0.00000000
## Hieracium.spp. 0.027777778 0.00000000
## Holcus.spp. 0.181386437 0.49271004
## Holcus.lanatus 0.137262555 0.20234192
## Holcus.mollis 0.166666667 0.00000000
## Homalothecium.lutescens 0.055555556 0.00000000
## Hylocomium.splendens 0.194444444 0.00000000
## Hypericum.perforatum 0.166666667 0.00000000
## Hypnum.cupressiforme 0.138888889 0.08888889
## Hypnum.imponens 0.027777778 0.00000000
## Hypnum.jutlandicum 0.083333333 0.00000000
## Hypochaeris.radicata 0.000000000 0.20000000
## Kindbergia.praelonga 0.166666667 0.00000000
## Lathyrus.pratensis 0.007610350 0.17260274
## Leontodon.hispidus 0.045834593 0.11749773
## Leontodon.saxatilis 0.000000000 0.20000000
## Leucanthemum.vulgare 0.158641284 0.20963046
## Linum.catharticum 0.032679739 0.14117647
## Lolium.perenne 0.072055138 0.02706767
## Lophocolea.semiteres 0.027777778 0.00000000
## Lotus.corniculatus 0.250457064 0.17458864
## Luzula.multiflora 0.027777778 0.00000000
## Lysimachia.maritima 0.055555556 0.00000000
## Medicago.lupulina 0.058016878 0.12151899
## Myosotis.arvensis 0.138888889 0.00000000
## Ononis.repens 0.222222222 0.00000000
## Oxalis.acetosella 0.027777778 0.00000000
## Pastinaca.sativa 0.027777778 0.00000000
## Pentaglottis.sempervirens 0.027777778 0.00000000
## Pillosella.officinarum 0.154459392 0.17757848
## Plantago.coronopus 0.111111111 0.00000000
## Plantago.lanceolata 0.277601299 0.03659466
## Pleurozium.schreberi 0.111111111 0.00000000
## Poa.annua 0.083333333 0.00000000
## Poa.spp. 0.027777778 0.00000000
## Polytrichum.commune 0.027777778 0.00000000
## Polytrichum.commune.agg. 0.027777778 0.00000000
## Polytrichum.formosum 0.027777778 0.00000000
## Potentilla.reptans 0.002133626 0.19487930
## Prunella.vulgaris 0.045537341 0.11803279
## Pseudoscleropidum.purum 0.222222222 0.00000000
## Pteridium.aquilinum 0.083333333 0.00000000
## Ranunculus.acris 0.027777778 0.00000000
## Ranunculus.repens 0.044191919 0.04090909
## Reseda.lutea 0.027777778 0.00000000
## Rhinanthus.minor 0.027777778 0.00000000
## Rhizomnium.punctatum 0.027777778 0.00000000
## Rhytidadelphus.squarrosus 0.245098039 0.05294118
## Rhytidadelphus.triquetris 0.055555556 0.00000000
## Rubus.fruticosus 0.055555556 0.00000000
## Sanguisorba.minor.spp.minor 0.001090180 0.19215071
## Saniona.uncinata 0.055555556 0.00000000
## Sedum.anglicum 0.027777778 0.00000000
## Senecio.jacobaea 0.055555556 0.00000000
## Senecio.vulgaris 0.000000000 0.20000000
## Sonchus.arvensis 0.027777778 0.00000000
## Stachys.sylvatica 0.055555556 0.00000000
## Stellaria.apetala 0.000000000 0.20000000
## Taraxacum.agg. 0.167887668 0.07912088
## Thuidium.tamariscinum 0.083333333 0.00000000
## Thymus.polytrichus 0.050088254 0.14848065
## Trichostomum.crispulum 0.068466354 0.10140845
## Trifolium.campestre 0.004663682 0.75522865
## Trifolium.dubium 0.002551991 0.18162566
## Trifolium.pratense 0.054347826 0.06956522
## Trifolium.repens 0.019216348 0.30776153
## Trisetum.flavescens 0.111111111 0.00000000
## Tussilago.farfara 0.083333333 0.00000000
## Urtica.diocia 0.111111111 0.00000000
## Veronica.officinalis 0.027777778 0.00000000
## Vicia.sativa 0.027777778 0.00000000
## Viola.riviniana 0.027777778 0.00000000
## Weissia.controversa 0.027777778 0.00000000
## Zygodon.stirtonii 0.027777778 0.00000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 2
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 2
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 2 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 2
## Briza.media Bromus.hordeaceus
## 2 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 2
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 2 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 2 1
## Carlina.vulgaris Centaurea.nigra
## 2 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 2
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 2
## Festuca.rubra Festuca.rubra.agg.
## 2 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 2 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 2 2
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 2
## Kindbergia.praelonga Lathyrus.pratensis
## 1 2
## Leontodon.hispidus Leontodon.saxatilis
## 2 2
## Leucanthemum.vulgare Linum.catharticum
## 2 2
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 2
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 2
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 2 2
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 2 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 2 1
## Stachys.sylvatica Stellaria.apetala
## 1 2
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 2 2
## Trifolium.campestre Trifolium.dubium
## 2 2
## Trifolium.pratense Trifolium.repens
## 2 2
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.22222222 0.02777778
## Alchemilla.mollis Alopercus.pratensis
## 0.02777778 0.02777778
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.05555556 0.16666667
## Anthyllis.vulneraria Aphanes.arvensis
## 0.10394907 0.06206897
## Arrhenatherum.elatius Atrichum.undulatum
## 0.17505386 0.05555556
## Avenula.pratensis Bellis.perennis
## 0.02777778 0.21818182
## Betula.pubescens Blackstonia.perfoliata
## 0.02777778 0.02777778
## Brachythecium.albicans Brachythecium.glareosum
## 0.20000000 0.02777778
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.11111111 0.16240602
## Briza.media Bromus.hordeaceus
## 0.06148008 0.02777778
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.02777778 0.17560976
## Bryum.capillare Bryum.spp.
## 0.02777778 0.08333333
## Calliergonella.cupsidata Calypogeia.arguta
## 0.35409836 0.22222222
## Campanula.rotundifolia Carex.distans
## 0.02777778 0.05555556
## Carex.flacca Carex.panicea
## 0.18324496 0.02777778
## Carlina.vulgaris Centaurea.nigra
## 0.14244604 0.05555556
## Centaurium.erythraea Centaurium.littorale
## 0.05555556 0.11111111
## Centaurium.pulchellum Cerastium.fontanum
## 0.02777778 0.45714286
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.02777778 0.02777778
## Cirsium.arvense Cirsium.palustre
## 0.08333333 0.05555556
## Crepis.capillaris Cynosurus.cristatus
## 0.05555556 0.18523106
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.16666667 0.05555556
## Danthonia.decumbens Daucus.carrota
## 0.02777778 0.05555556
## Dicranella.spp. Dicranum.scoparium
## 0.02777778 0.13888889
## Epilobium.montanum Equisetum.arvense
## 0.08333333 0.08333333
## Equisteum.variegatum Erigeron.acer
## 0.02777778 0.05555556
## Euphrasia.agg Festuca.ovina
## 0.13245534 0.15677994
## Festuca.rubra Festuca.rubra.agg.
## 0.43373494 0.02777778
## Filipendula.ulmaria Fissidens.adianthoides
## 0.08333333 0.02777778
## Fissidens.dubius Fissidens.exilis
## 0.05555556 0.02777778
## Fragaria.vesca Galium.aparine
## 0.16666667 0.02777778
## Galium.arvense Galium.saxatile
## 0.02777778 0.02777778
## Galium.verum Geum.urbanum
## 0.17463061 0.02777778
## Glechoma.hederacea Helicotrichon.spp.
## 0.02777778 0.02777778
## Heracleum.sphondylium Hieracium.spp.
## 0.08333333 0.02777778
## Holcus.spp. Holcus.lanatus
## 0.49271004 0.20234192
## Holcus.mollis Homalothecium.lutescens
## 0.16666667 0.05555556
## Hylocomium.splendens Hypericum.perforatum
## 0.19444444 0.16666667
## Hypnum.cupressiforme Hypnum.imponens
## 0.13888889 0.02777778
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.08333333 0.20000000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.16666667 0.17260274
## Leontodon.hispidus Leontodon.saxatilis
## 0.11749773 0.20000000
## Leucanthemum.vulgare Linum.catharticum
## 0.20963046 0.14117647
## Lolium.perenne Lophocolea.semiteres
## 0.07205514 0.02777778
## Lotus.corniculatus Luzula.multiflora
## 0.25045706 0.02777778
## Lysimachia.maritima Medicago.lupulina
## 0.05555556 0.12151899
## Myosotis.arvensis Ononis.repens
## 0.13888889 0.22222222
## Oxalis.acetosella Pastinaca.sativa
## 0.02777778 0.02777778
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.02777778 0.17757848
## Plantago.coronopus Plantago.lanceolata
## 0.11111111 0.27760130
## Pleurozium.schreberi Poa.annua
## 0.11111111 0.08333333
## Poa.spp. Polytrichum.commune
## 0.02777778 0.02777778
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.02777778 0.02777778
## Potentilla.reptans Prunella.vulgaris
## 0.19487930 0.11803279
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.22222222 0.08333333
## Ranunculus.acris Ranunculus.repens
## 0.02777778 0.04419192
## Reseda.lutea Rhinanthus.minor
## 0.02777778 0.02777778
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.02777778 0.24509804
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.05555556 0.05555556
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.19215071 0.05555556
## Sedum.anglicum Senecio.jacobaea
## 0.02777778 0.05555556
## Senecio.vulgaris Sonchus.arvensis
## 0.20000000 0.02777778
## Stachys.sylvatica Stellaria.apetala
## 0.05555556 0.20000000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.16788767 0.08333333
## Thymus.polytrichus Trichostomum.crispulum
## 0.14848065 0.10140845
## Trifolium.campestre Trifolium.dubium
## 0.75522865 0.18162566
## Trifolium.pratense Trifolium.repens
## 0.06956522 0.30776153
## Trisetum.flavescens Tussilago.farfara
## 0.11111111 0.08333333
## Urtica.diocia Veronica.officinalis
## 0.11111111 0.02777778
## Vicia.sativa Viola.riviniana
## 0.02777778 0.02777778
## Weissia.controversa Zygodon.stirtonii
## 0.02777778 0.02777778
##
## $pval
## Agrostis.spp. Agrostis.canina
## 0.435 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 0.566
## Anthyllis.vulneraria Aphanes.arvensis
## 0.926 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.670 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.612
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 0.139 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.817 0.638
## Briza.media Bromus.hordeaceus
## 0.893 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 0.122
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.350 0.487
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.580 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.894 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 0.925
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.022
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 0.144
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.623 0.890
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 0.658
## Epilobium.montanum Equisetum.arvense
## 0.903 0.891
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 1.000 0.570
## Festuca.rubra Festuca.rubra.agg.
## 0.106 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 0.560 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 0.230 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.157 0.733
## Holcus.mollis Homalothecium.lutescens
## 0.598 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.527 0.589
## Hypnum.cupressiforme Hypnum.imponens
## 1.000 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.909 0.106
## Kindbergia.praelonga Lathyrus.pratensis
## 0.573 0.113
## Leontodon.hispidus Leontodon.saxatilis
## 0.828 0.134
## Leucanthemum.vulgare Linum.catharticum
## 0.824 0.340
## Lolium.perenne Lophocolea.semiteres
## 0.922 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.826 1.000
## Lysimachia.maritima Medicago.lupulina
## 0.899 0.678
## Myosotis.arvensis Ononis.repens
## 0.777 0.509
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.887
## Plantago.coronopus Plantago.lanceolata
## 0.830 0.527
## Pleurozium.schreberi Poa.annua
## 0.905 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 0.145 0.911
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.527 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.557
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.130 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 0.116 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 0.128
## Taraxacum.agg. Thuidium.tamariscinum
## 0.828 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.745 0.915
## Trifolium.campestre Trifolium.dubium
## 0.001 0.114
## Trifolium.pratense Trifolium.repens
## 0.896 0.093
## Trisetum.flavescens Tussilago.farfara
## 0.702 1.000
## Urtica.diocia Veronica.officinalis
## 0.820 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Trifolium campestre has a high indval score of 0.755 and a low p value of 0.001. This #species is the indicator species for Pigeonite.
clustPseudowollastonite <-cut(PlantChemistry1$Pseudowollastonite, 5, labels=FALSE)
PseudowollastoniteIndval <- indval(as.matrix(PlantSpecies1),
clustPseudowollastonite, type= "long")
gr <- PseudowollastoniteIndval$maxcls[PseudowollastoniteIndval$pval<=0.05]
iv <- PseudowollastoniteIndval$indcls[PseudowollastoniteIndval$pval<=0.05]
pv <- PseudowollastoniteIndval$pval[PseudowollastoniteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[PseudowollastoniteIndval$pval<=0.05]
PseudowollastoniteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
PseudowollastoniteIndvalsummary <- PseudowollastoniteIndvalsummary [order
(PseudowollastoniteIndvalsummary$group, -PseudowollastoniteIndvalsummary$indval),]
print(PseudowollastoniteIndvalsummary)
## group indval pvalue freq
## Trifolium.dubium 2 0.9821158 0.022 4
## Bryum.c.f..pallescens 2 0.9756098 0.024 1
## Thymus.polytrichus 2 0.9412156 0.028 6
## Carlina.vulgaris 2 0.9322034 0.030 2
## Linum.catharticum 2 0.9302326 0.049 4
summary(indval(as.matrix(PlantSpecies1), clustPseudowollastonite))
## cluster indicator_value probability
## Trifolium.dubium 2 0.9821 0.014
## Bryum.c.f..pallescens 2 0.9756 0.020
## Thymus.polytrichus 2 0.9412 0.026
## Carlina.vulgaris 2 0.9322 0.020
##
## Sum of probabilities = 129.601
##
## Sum of Indicator Values = 21.08
##
## Sum of Significant Indicator Values = 3.83
##
## Number of Significant Indicators = 4
##
## Significant Indicator Distribution
##
## 2
## 4
print(indval(as.matrix(PlantSpecies1), clustPseudowollastonite))
## $relfrq
## 1 5
## Agrostis.spp. 0.200 0
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.025 0
## Alopercus.pratensis 0.025 0
## Angelica.sylvestris 0.050 0
## Anthoxanthum.odoratum 0.150 0
## Anthyllis.vulneraria 0.125 0
## Aphanes.arvensis 0.075 0
## Arrhenatherum.elatius 0.175 1
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.025 0
## Bellis.perennis 0.300 0
## Betula.pubescens 0.025 0
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.100 0
## Brachythecium.rutabulum 0.150 0
## Briza.media 0.075 0
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.025 0
## Bryum.c.f..pallescens 0.050 1
## Bryum.capillare 0.025 0
## Bryum.spp. 0.075 0
## Calliergonella.cupsidata 0.375 0
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.025 0
## Carex.distans 0.050 0
## Carex.flacca 0.175 0
## Carex.panicea 0.025 0
## Carlina.vulgaris 0.225 1
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.100 0
## Centaurium.pulchellum 0.025 0
## Cerastium.fontanum 0.150 1
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.025 0
## Cirsium.arvense 0.075 0
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.050 0
## Cynosurus.cristatus 0.075 0
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.050 0
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.125 0
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.075 0
## Equisteum.variegatum 0.025 0
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.250 1
## Festuca.ovina 0.175 0
## Festuca.rubra 0.375 0
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.075 0
## Fissidens.adianthoides 0.025 0
## Fissidens.dubius 0.050 0
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.150 0
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.100 0
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.025 0
## Holcus.spp. 0.500 1
## Holcus.lanatus 0.300 0
## Holcus.mollis 0.150 0
## Homalothecium.lutescens 0.050 0
## Hylocomium.splendens 0.175 0
## Hypericum.perforatum 0.150 0
## Hypnum.cupressiforme 0.225 1
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.025 0
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.075 0
## Leontodon.hispidus 0.125 0
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.350 0
## Linum.catharticum 0.100 1
## Lolium.perenne 0.100 0
## Lophocolea.semiteres 0.025 0
## Lotus.corniculatus 0.450 0
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.050 0
## Medicago.lupulina 0.125 0
## Myosotis.arvensis 0.125 0
## Ononis.repens 0.200 0
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.275 1
## Plantago.coronopus 0.100 0
## Plantago.lanceolata 0.300 1
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.075 0
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.100 0
## Prunella.vulgaris 0.125 0
## Pseudoscleropidum.purum 0.200 0
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.075 0
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.300 1
## Rhytidadelphus.triquetris 0.050 0
## Rubus.fruticosus 0.050 0
## Sanguisorba.minor.spp.minor 0.050 0
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.050 0
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.050 0
## Stellaria.apetala 0.025 0
## Taraxacum.agg. 0.275 0
## Thuidium.tamariscinum 0.075 0
## Thymus.polytrichus 0.175 1
## Trichostomum.crispulum 0.125 1
## Trifolium.campestre 0.175 0
## Trifolium.dubium 0.025 1
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.125 0
## Trisetum.flavescens 0.100 0
## Tussilago.farfara 0.075 0
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.025 0
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.025 0
## Zygodon.stirtonii 0.025 0
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.0000000
## Agrostis.canina 1.00000000 0.0000000
## Alchemilla.mollis 1.00000000 0.0000000
## Alopercus.pratensis 1.00000000 0.0000000
## Angelica.sylvestris 1.00000000 0.0000000
## Anthoxanthum.odoratum 1.00000000 0.0000000
## Anthyllis.vulneraria 1.00000000 0.0000000
## Aphanes.arvensis 1.00000000 0.0000000
## Arrhenatherum.elatius 0.61904762 0.3809524
## Atrichum.undulatum 1.00000000 0.0000000
## Avenula.pratensis 1.00000000 0.0000000
## Bellis.perennis 1.00000000 0.0000000
## Betula.pubescens 1.00000000 0.0000000
## Blackstonia.perfoliata 1.00000000 0.0000000
## Brachythecium.albicans 1.00000000 0.0000000
## Brachythecium.glareosum 1.00000000 0.0000000
## Brachythecium.mildeanum 1.00000000 0.0000000
## Brachythecium.rutabulum 1.00000000 0.0000000
## Briza.media 1.00000000 0.0000000
## Bromus.hordeaceus 1.00000000 0.0000000
## Bryum.c.f..caespiticium 1.00000000 0.0000000
## Bryum.c.f..pallescens 0.02439024 0.9756098
## Bryum.capillare 1.00000000 0.0000000
## Bryum.spp. 1.00000000 0.0000000
## Calliergonella.cupsidata 1.00000000 0.0000000
## Calypogeia.arguta 1.00000000 0.0000000
## Campanula.rotundifolia 1.00000000 0.0000000
## Carex.distans 1.00000000 0.0000000
## Carex.flacca 1.00000000 0.0000000
## Carex.panicea 1.00000000 0.0000000
## Carlina.vulgaris 0.06779661 0.9322034
## Centaurea.nigra 1.00000000 0.0000000
## Centaurium.erythraea 1.00000000 0.0000000
## Centaurium.littorale 1.00000000 0.0000000
## Centaurium.pulchellum 1.00000000 0.0000000
## Cerastium.fontanum 0.23076923 0.7692308
## Chamaenerion.angustifolium 1.00000000 0.0000000
## Cirriphyllum.piliferum 1.00000000 0.0000000
## Cirsium.arvense 1.00000000 0.0000000
## Cirsium.palustre 1.00000000 0.0000000
## Crepis.capillaris 1.00000000 0.0000000
## Cynosurus.cristatus 1.00000000 0.0000000
## Dactylis.glomerata 1.00000000 0.0000000
## Dactylorhiza.fuchsii 1.00000000 0.0000000
## Danthonia.decumbens 1.00000000 0.0000000
## Daucus.carrota 1.00000000 0.0000000
## Dicranella.spp. 1.00000000 0.0000000
## Dicranum.scoparium 1.00000000 0.0000000
## Epilobium.montanum 1.00000000 0.0000000
## Equisetum.arvense 1.00000000 0.0000000
## Equisteum.variegatum 1.00000000 0.0000000
## Erigeron.acer 1.00000000 0.0000000
## Euphrasia.agg 0.14093960 0.8590604
## Festuca.ovina 1.00000000 0.0000000
## Festuca.rubra 1.00000000 0.0000000
## Festuca.rubra.agg. 1.00000000 0.0000000
## Filipendula.ulmaria 1.00000000 0.0000000
## Fissidens.adianthoides 1.00000000 0.0000000
## Fissidens.dubius 1.00000000 0.0000000
## Fissidens.exilis 1.00000000 0.0000000
## Fragaria.vesca 1.00000000 0.0000000
## Galium.aparine 1.00000000 0.0000000
## Galium.arvense 1.00000000 0.0000000
## Galium.saxatile 1.00000000 0.0000000
## Galium.verum 1.00000000 0.0000000
## Geum.urbanum 1.00000000 0.0000000
## Glechoma.hederacea 1.00000000 0.0000000
## Helicotrichon.spp. 1.00000000 0.0000000
## Heracleum.sphondylium 1.00000000 0.0000000
## Hieracium.spp. 1.00000000 0.0000000
## Holcus.spp. 0.32800000 0.6720000
## Holcus.lanatus 1.00000000 0.0000000
## Holcus.mollis 1.00000000 0.0000000
## Homalothecium.lutescens 1.00000000 0.0000000
## Hylocomium.splendens 1.00000000 0.0000000
## Hypericum.perforatum 1.00000000 0.0000000
## Hypnum.cupressiforme 0.18367347 0.8163265
## Hypnum.imponens 1.00000000 0.0000000
## Hypnum.jutlandicum 1.00000000 0.0000000
## Hypochaeris.radicata 1.00000000 0.0000000
## Kindbergia.praelonga 1.00000000 0.0000000
## Lathyrus.pratensis 1.00000000 0.0000000
## Leontodon.hispidus 1.00000000 0.0000000
## Leontodon.saxatilis 1.00000000 0.0000000
## Leucanthemum.vulgare 1.00000000 0.0000000
## Linum.catharticum 0.06976744 0.9302326
## Lolium.perenne 1.00000000 0.0000000
## Lophocolea.semiteres 1.00000000 0.0000000
## Lotus.corniculatus 1.00000000 0.0000000
## Luzula.multiflora 1.00000000 0.0000000
## Lysimachia.maritima 1.00000000 0.0000000
## Medicago.lupulina 1.00000000 0.0000000
## Myosotis.arvensis 1.00000000 0.0000000
## Ononis.repens 1.00000000 0.0000000
## Oxalis.acetosella 1.00000000 0.0000000
## Pastinaca.sativa 1.00000000 0.0000000
## Pentaglottis.sempervirens 1.00000000 0.0000000
## Pillosella.officinarum 0.28182807 0.7181719
## Plantago.coronopus 1.00000000 0.0000000
## Plantago.lanceolata 0.78260870 0.2173913
## Pleurozium.schreberi 1.00000000 0.0000000
## Poa.annua 1.00000000 0.0000000
## Poa.spp. 1.00000000 0.0000000
## Polytrichum.commune 1.00000000 0.0000000
## Polytrichum.commune.agg. 1.00000000 0.0000000
## Polytrichum.formosum 1.00000000 0.0000000
## Potentilla.reptans 1.00000000 0.0000000
## Prunella.vulgaris 1.00000000 0.0000000
## Pseudoscleropidum.purum 1.00000000 0.0000000
## Pteridium.aquilinum 1.00000000 0.0000000
## Ranunculus.acris 1.00000000 0.0000000
## Ranunculus.repens 1.00000000 0.0000000
## Reseda.lutea 1.00000000 0.0000000
## Rhinanthus.minor 1.00000000 0.0000000
## Rhizomnium.punctatum 1.00000000 0.0000000
## Rhytidadelphus.squarrosus 0.33333333 0.6666667
## Rhytidadelphus.triquetris 1.00000000 0.0000000
## Rubus.fruticosus 1.00000000 0.0000000
## Sanguisorba.minor.spp.minor 1.00000000 0.0000000
## Saniona.uncinata 1.00000000 0.0000000
## Sedum.anglicum 1.00000000 0.0000000
## Senecio.jacobaea 1.00000000 0.0000000
## Senecio.vulgaris 1.00000000 0.0000000
## Sonchus.arvensis 1.00000000 0.0000000
## Stachys.sylvatica 1.00000000 0.0000000
## Stellaria.apetala 1.00000000 0.0000000
## Taraxacum.agg. 1.00000000 0.0000000
## Thuidium.tamariscinum 1.00000000 0.0000000
## Thymus.polytrichus 0.05878440 0.9412156
## Trichostomum.crispulum 0.14893617 0.8510638
## Trifolium.campestre 1.00000000 0.0000000
## Trifolium.dubium 0.01788421 0.9821158
## Trifolium.pratense 1.00000000 0.0000000
## Trifolium.repens 1.00000000 0.0000000
## Trisetum.flavescens 1.00000000 0.0000000
## Tussilago.farfara 1.00000000 0.0000000
## Urtica.diocia 1.00000000 0.0000000
## Veronica.officinalis 1.00000000 0.0000000
## Vicia.sativa 1.00000000 0.0000000
## Viola.riviniana 1.00000000 0.0000000
## Weissia.controversa 1.00000000 0.0000000
## Zygodon.stirtonii 1.00000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.2000000000 0.0000000
## Agrostis.canina 0.0250000000 0.0000000
## Alchemilla.mollis 0.0250000000 0.0000000
## Alopercus.pratensis 0.0250000000 0.0000000
## Angelica.sylvestris 0.0500000000 0.0000000
## Anthoxanthum.odoratum 0.1500000000 0.0000000
## Anthyllis.vulneraria 0.1250000000 0.0000000
## Aphanes.arvensis 0.0750000000 0.0000000
## Arrhenatherum.elatius 0.1083333333 0.3809524
## Atrichum.undulatum 0.0500000000 0.0000000
## Avenula.pratensis 0.0250000000 0.0000000
## Bellis.perennis 0.3000000000 0.0000000
## Betula.pubescens 0.0250000000 0.0000000
## Blackstonia.perfoliata 0.0250000000 0.0000000
## Brachythecium.albicans 0.0250000000 0.0000000
## Brachythecium.glareosum 0.0250000000 0.0000000
## Brachythecium.mildeanum 0.1000000000 0.0000000
## Brachythecium.rutabulum 0.1500000000 0.0000000
## Briza.media 0.0750000000 0.0000000
## Bromus.hordeaceus 0.0250000000 0.0000000
## Bryum.c.f..caespiticium 0.0250000000 0.0000000
## Bryum.c.f..pallescens 0.0012195122 0.9756098
## Bryum.capillare 0.0250000000 0.0000000
## Bryum.spp. 0.0750000000 0.0000000
## Calliergonella.cupsidata 0.3750000000 0.0000000
## Calypogeia.arguta 0.2000000000 0.0000000
## Campanula.rotundifolia 0.0250000000 0.0000000
## Carex.distans 0.0500000000 0.0000000
## Carex.flacca 0.1750000000 0.0000000
## Carex.panicea 0.0250000000 0.0000000
## Carlina.vulgaris 0.0152542373 0.9322034
## Centaurea.nigra 0.0500000000 0.0000000
## Centaurium.erythraea 0.0500000000 0.0000000
## Centaurium.littorale 0.1000000000 0.0000000
## Centaurium.pulchellum 0.0250000000 0.0000000
## Cerastium.fontanum 0.0346153846 0.7692308
## Chamaenerion.angustifolium 0.0250000000 0.0000000
## Cirriphyllum.piliferum 0.0250000000 0.0000000
## Cirsium.arvense 0.0750000000 0.0000000
## Cirsium.palustre 0.0500000000 0.0000000
## Crepis.capillaris 0.0500000000 0.0000000
## Cynosurus.cristatus 0.0750000000 0.0000000
## Dactylis.glomerata 0.1500000000 0.0000000
## Dactylorhiza.fuchsii 0.0500000000 0.0000000
## Danthonia.decumbens 0.0250000000 0.0000000
## Daucus.carrota 0.0500000000 0.0000000
## Dicranella.spp. 0.0250000000 0.0000000
## Dicranum.scoparium 0.1250000000 0.0000000
## Epilobium.montanum 0.0750000000 0.0000000
## Equisetum.arvense 0.0750000000 0.0000000
## Equisteum.variegatum 0.0250000000 0.0000000
## Erigeron.acer 0.0500000000 0.0000000
## Euphrasia.agg 0.0352348993 0.8590604
## Festuca.ovina 0.1750000000 0.0000000
## Festuca.rubra 0.3750000000 0.0000000
## Festuca.rubra.agg. 0.0250000000 0.0000000
## Filipendula.ulmaria 0.0750000000 0.0000000
## Fissidens.adianthoides 0.0250000000 0.0000000
## Fissidens.dubius 0.0500000000 0.0000000
## Fissidens.exilis 0.0250000000 0.0000000
## Fragaria.vesca 0.1500000000 0.0000000
## Galium.aparine 0.0250000000 0.0000000
## Galium.arvense 0.0250000000 0.0000000
## Galium.saxatile 0.0250000000 0.0000000
## Galium.verum 0.1000000000 0.0000000
## Geum.urbanum 0.0250000000 0.0000000
## Glechoma.hederacea 0.0250000000 0.0000000
## Helicotrichon.spp. 0.0250000000 0.0000000
## Heracleum.sphondylium 0.0750000000 0.0000000
## Hieracium.spp. 0.0250000000 0.0000000
## Holcus.spp. 0.1640000000 0.6720000
## Holcus.lanatus 0.3000000000 0.0000000
## Holcus.mollis 0.1500000000 0.0000000
## Homalothecium.lutescens 0.0500000000 0.0000000
## Hylocomium.splendens 0.1750000000 0.0000000
## Hypericum.perforatum 0.1500000000 0.0000000
## Hypnum.cupressiforme 0.0413265306 0.8163265
## Hypnum.imponens 0.0250000000 0.0000000
## Hypnum.jutlandicum 0.0750000000 0.0000000
## Hypochaeris.radicata 0.0250000000 0.0000000
## Kindbergia.praelonga 0.1500000000 0.0000000
## Lathyrus.pratensis 0.0750000000 0.0000000
## Leontodon.hispidus 0.1250000000 0.0000000
## Leontodon.saxatilis 0.0250000000 0.0000000
## Leucanthemum.vulgare 0.3500000000 0.0000000
## Linum.catharticum 0.0069767442 0.9302326
## Lolium.perenne 0.1000000000 0.0000000
## Lophocolea.semiteres 0.0250000000 0.0000000
## Lotus.corniculatus 0.4500000000 0.0000000
## Luzula.multiflora 0.0250000000 0.0000000
## Lysimachia.maritima 0.0500000000 0.0000000
## Medicago.lupulina 0.1250000000 0.0000000
## Myosotis.arvensis 0.1250000000 0.0000000
## Ononis.repens 0.2000000000 0.0000000
## Oxalis.acetosella 0.0250000000 0.0000000
## Pastinaca.sativa 0.0250000000 0.0000000
## Pentaglottis.sempervirens 0.0250000000 0.0000000
## Pillosella.officinarum 0.0775027203 0.7181719
## Plantago.coronopus 0.1000000000 0.0000000
## Plantago.lanceolata 0.2347826087 0.2173913
## Pleurozium.schreberi 0.1000000000 0.0000000
## Poa.annua 0.0750000000 0.0000000
## Poa.spp. 0.0250000000 0.0000000
## Polytrichum.commune 0.0250000000 0.0000000
## Polytrichum.commune.agg. 0.0250000000 0.0000000
## Polytrichum.formosum 0.0250000000 0.0000000
## Potentilla.reptans 0.1000000000 0.0000000
## Prunella.vulgaris 0.1250000000 0.0000000
## Pseudoscleropidum.purum 0.2000000000 0.0000000
## Pteridium.aquilinum 0.0750000000 0.0000000
## Ranunculus.acris 0.0250000000 0.0000000
## Ranunculus.repens 0.0750000000 0.0000000
## Reseda.lutea 0.0250000000 0.0000000
## Rhinanthus.minor 0.0250000000 0.0000000
## Rhizomnium.punctatum 0.0250000000 0.0000000
## Rhytidadelphus.squarrosus 0.1000000000 0.6666667
## Rhytidadelphus.triquetris 0.0500000000 0.0000000
## Rubus.fruticosus 0.0500000000 0.0000000
## Sanguisorba.minor.spp.minor 0.0500000000 0.0000000
## Saniona.uncinata 0.0500000000 0.0000000
## Sedum.anglicum 0.0250000000 0.0000000
## Senecio.jacobaea 0.0500000000 0.0000000
## Senecio.vulgaris 0.0250000000 0.0000000
## Sonchus.arvensis 0.0250000000 0.0000000
## Stachys.sylvatica 0.0500000000 0.0000000
## Stellaria.apetala 0.0250000000 0.0000000
## Taraxacum.agg. 0.2750000000 0.0000000
## Thuidium.tamariscinum 0.0750000000 0.0000000
## Thymus.polytrichus 0.0102872703 0.9412156
## Trichostomum.crispulum 0.0186170213 0.8510638
## Trifolium.campestre 0.1750000000 0.0000000
## Trifolium.dubium 0.0004471052 0.9821158
## Trifolium.pratense 0.1000000000 0.0000000
## Trifolium.repens 0.1250000000 0.0000000
## Trisetum.flavescens 0.1000000000 0.0000000
## Tussilago.farfara 0.0750000000 0.0000000
## Urtica.diocia 0.1000000000 0.0000000
## Veronica.officinalis 0.0250000000 0.0000000
## Vicia.sativa 0.0250000000 0.0000000
## Viola.riviniana 0.0250000000 0.0000000
## Weissia.controversa 0.0250000000 0.0000000
## Zygodon.stirtonii 0.0250000000 0.0000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 2 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 2
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 2 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 2 1
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 2 1
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 2 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 2
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 2
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 2
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 2 2
## Trifolium.campestre Trifolium.dubium
## 1 2
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.2000000 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 0.0250000 0.0250000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.0500000 0.1500000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.1250000 0.0750000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.3809524 0.0500000
## Avenula.pratensis Bellis.perennis
## 0.0250000 0.3000000
## Betula.pubescens Blackstonia.perfoliata
## 0.0250000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.1000000 0.1500000
## Briza.media Bromus.hordeaceus
## 0.0750000 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.0250000 0.9756098
## Bryum.capillare Bryum.spp.
## 0.0250000 0.0750000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.3750000 0.2000000
## Campanula.rotundifolia Carex.distans
## 0.0250000 0.0500000
## Carex.flacca Carex.panicea
## 0.1750000 0.0250000
## Carlina.vulgaris Centaurea.nigra
## 0.9322034 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.1000000
## Centaurium.pulchellum Cerastium.fontanum
## 0.0250000 0.7692308
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 0.0250000
## Cirsium.arvense Cirsium.palustre
## 0.0750000 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.0500000 0.0750000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.0500000
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.1250000
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.0750000
## Equisteum.variegatum Erigeron.acer
## 0.0250000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.8590604 0.1750000
## Festuca.rubra Festuca.rubra.agg.
## 0.3750000 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.0750000 0.0250000
## Fissidens.dubius Fissidens.exilis
## 0.0500000 0.0250000
## Fragaria.vesca Galium.aparine
## 0.1500000 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.1000000 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 0.0250000
## Holcus.spp. Holcus.lanatus
## 0.6720000 0.3000000
## Holcus.mollis Homalothecium.lutescens
## 0.1500000 0.0500000
## Hylocomium.splendens Hypericum.perforatum
## 0.1750000 0.1500000
## Hypnum.cupressiforme Hypnum.imponens
## 0.8163265 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 0.0250000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.0750000
## Leontodon.hispidus Leontodon.saxatilis
## 0.1250000 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.3500000 0.9302326
## Lolium.perenne Lophocolea.semiteres
## 0.1000000 0.0250000
## Lotus.corniculatus Luzula.multiflora
## 0.4500000 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.0500000 0.1250000
## Myosotis.arvensis Ononis.repens
## 0.1250000 0.2000000
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.7181719
## Plantago.coronopus Plantago.lanceolata
## 0.1000000 0.2347826
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.0750000
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.1000000 0.1250000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.2000000 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.0750000
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.6666667
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.0500000 0.0500000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.0500000 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.0500000
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.0500000 0.0250000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.2750000 0.0750000
## Thymus.polytrichus Trichostomum.crispulum
## 0.9412156 0.8510638
## Trifolium.campestre Trifolium.dubium
## 0.1750000 0.9821158
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.1250000
## Trisetum.flavescens Tussilago.farfara
## 0.1000000 0.0750000
## Urtica.diocia Veronica.officinalis
## 0.1000000 0.0250000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 0.0250000 0.0250000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1.000 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 1.000 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.219 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 1.000
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 0.029
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.907 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.975 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.018 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.168
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.069 1.000
## Festuca.rubra Festuca.rubra.agg.
## 0.891 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 1.000 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.203 0.958
## Holcus.mollis Homalothecium.lutescens
## 0.977 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.974 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 0.116 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.923 0.071
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.764 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.896
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.143
## Plantago.coronopus Plantago.lanceolata
## 1.000 1.000
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1.000 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.213
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.022 0.123
## Trifolium.campestre Trifolium.dubium
## 1.000 0.033
## Trifolium.pratense Trifolium.repens
## 1.000 1.000
## Trisetum.flavescens Tussilago.farfara
## 1.000 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Trifolium dubium has a high indval score of 0.982 and a low p value of 0.020. This is the #indicator species for Pseudowollastonite.
clustSpinel <-cut(PlantChemistry1$Spinel, 5, labels=FALSE)
SpinelIndval <- indval(as.matrix(PlantSpecies1), clustSpinel, type= "long")
gr <- SpinelIndval$maxcls[SpinelIndval$pval<=0.05]
iv <- SpinelIndval$indcls[SpinelIndval$pval<=0.05]
pv <- SpinelIndval$pval[SpinelIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[SpinelIndval$pval<=0.05]
SpinelIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
SpinelIndvalsummary <- SpinelIndvalsummary [order
(SpinelIndvalsummary$group, -SpinelIndvalsummary$indval),]
print(SpinelIndvalsummary)
## group indval pvalue freq
## Trifolium.dubium 2 0.9821158 0.033 4
## Bryum.c.f..pallescens 2 0.9756098 0.019 1
## Thymus.polytrichus 2 0.9412156 0.024 6
## Carlina.vulgaris 2 0.9322034 0.028 2
summary(indval(as.matrix(PlantSpecies1), clustSpinel))
## cluster indicator_value probability
## Trifolium.dubium 2 0.9821 0.023
## Bryum.c.f..pallescens 2 0.9756 0.030
## Thymus.polytrichus 2 0.9412 0.016
## Carlina.vulgaris 2 0.9322 0.017
##
## Sum of probabilities = 129.705
##
## Sum of Indicator Values = 21.08
##
## Sum of Significant Indicator Values = 3.83
##
## Number of Significant Indicators = 4
##
## Significant Indicator Distribution
##
## 2
## 4
print(indval(as.matrix(PlantSpecies1), clustSpinel))
## $relfrq
## 1 5
## Agrostis.spp. 0.200 0
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.025 0
## Alopercus.pratensis 0.025 0
## Angelica.sylvestris 0.050 0
## Anthoxanthum.odoratum 0.150 0
## Anthyllis.vulneraria 0.125 0
## Aphanes.arvensis 0.075 0
## Arrhenatherum.elatius 0.175 1
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.025 0
## Bellis.perennis 0.300 0
## Betula.pubescens 0.025 0
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.100 0
## Brachythecium.rutabulum 0.150 0
## Briza.media 0.075 0
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.025 0
## Bryum.c.f..pallescens 0.050 1
## Bryum.capillare 0.025 0
## Bryum.spp. 0.075 0
## Calliergonella.cupsidata 0.375 0
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.025 0
## Carex.distans 0.050 0
## Carex.flacca 0.175 0
## Carex.panicea 0.025 0
## Carlina.vulgaris 0.225 1
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.100 0
## Centaurium.pulchellum 0.025 0
## Cerastium.fontanum 0.150 1
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.025 0
## Cirsium.arvense 0.075 0
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.050 0
## Cynosurus.cristatus 0.075 0
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.050 0
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.125 0
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.075 0
## Equisteum.variegatum 0.025 0
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.250 1
## Festuca.ovina 0.175 0
## Festuca.rubra 0.375 0
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.075 0
## Fissidens.adianthoides 0.025 0
## Fissidens.dubius 0.050 0
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.150 0
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.100 0
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.025 0
## Holcus.spp. 0.500 1
## Holcus.lanatus 0.300 0
## Holcus.mollis 0.150 0
## Homalothecium.lutescens 0.050 0
## Hylocomium.splendens 0.175 0
## Hypericum.perforatum 0.150 0
## Hypnum.cupressiforme 0.225 1
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.025 0
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.075 0
## Leontodon.hispidus 0.125 0
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.350 0
## Linum.catharticum 0.100 1
## Lolium.perenne 0.100 0
## Lophocolea.semiteres 0.025 0
## Lotus.corniculatus 0.450 0
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.050 0
## Medicago.lupulina 0.125 0
## Myosotis.arvensis 0.125 0
## Ononis.repens 0.200 0
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.275 1
## Plantago.coronopus 0.100 0
## Plantago.lanceolata 0.300 1
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.075 0
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.100 0
## Prunella.vulgaris 0.125 0
## Pseudoscleropidum.purum 0.200 0
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.075 0
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.300 1
## Rhytidadelphus.triquetris 0.050 0
## Rubus.fruticosus 0.050 0
## Sanguisorba.minor.spp.minor 0.050 0
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.050 0
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.050 0
## Stellaria.apetala 0.025 0
## Taraxacum.agg. 0.275 0
## Thuidium.tamariscinum 0.075 0
## Thymus.polytrichus 0.175 1
## Trichostomum.crispulum 0.125 1
## Trifolium.campestre 0.175 0
## Trifolium.dubium 0.025 1
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.125 0
## Trisetum.flavescens 0.100 0
## Tussilago.farfara 0.075 0
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.025 0
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.025 0
## Zygodon.stirtonii 0.025 0
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.0000000
## Agrostis.canina 1.00000000 0.0000000
## Alchemilla.mollis 1.00000000 0.0000000
## Alopercus.pratensis 1.00000000 0.0000000
## Angelica.sylvestris 1.00000000 0.0000000
## Anthoxanthum.odoratum 1.00000000 0.0000000
## Anthyllis.vulneraria 1.00000000 0.0000000
## Aphanes.arvensis 1.00000000 0.0000000
## Arrhenatherum.elatius 0.61904762 0.3809524
## Atrichum.undulatum 1.00000000 0.0000000
## Avenula.pratensis 1.00000000 0.0000000
## Bellis.perennis 1.00000000 0.0000000
## Betula.pubescens 1.00000000 0.0000000
## Blackstonia.perfoliata 1.00000000 0.0000000
## Brachythecium.albicans 1.00000000 0.0000000
## Brachythecium.glareosum 1.00000000 0.0000000
## Brachythecium.mildeanum 1.00000000 0.0000000
## Brachythecium.rutabulum 1.00000000 0.0000000
## Briza.media 1.00000000 0.0000000
## Bromus.hordeaceus 1.00000000 0.0000000
## Bryum.c.f..caespiticium 1.00000000 0.0000000
## Bryum.c.f..pallescens 0.02439024 0.9756098
## Bryum.capillare 1.00000000 0.0000000
## Bryum.spp. 1.00000000 0.0000000
## Calliergonella.cupsidata 1.00000000 0.0000000
## Calypogeia.arguta 1.00000000 0.0000000
## Campanula.rotundifolia 1.00000000 0.0000000
## Carex.distans 1.00000000 0.0000000
## Carex.flacca 1.00000000 0.0000000
## Carex.panicea 1.00000000 0.0000000
## Carlina.vulgaris 0.06779661 0.9322034
## Centaurea.nigra 1.00000000 0.0000000
## Centaurium.erythraea 1.00000000 0.0000000
## Centaurium.littorale 1.00000000 0.0000000
## Centaurium.pulchellum 1.00000000 0.0000000
## Cerastium.fontanum 0.23076923 0.7692308
## Chamaenerion.angustifolium 1.00000000 0.0000000
## Cirriphyllum.piliferum 1.00000000 0.0000000
## Cirsium.arvense 1.00000000 0.0000000
## Cirsium.palustre 1.00000000 0.0000000
## Crepis.capillaris 1.00000000 0.0000000
## Cynosurus.cristatus 1.00000000 0.0000000
## Dactylis.glomerata 1.00000000 0.0000000
## Dactylorhiza.fuchsii 1.00000000 0.0000000
## Danthonia.decumbens 1.00000000 0.0000000
## Daucus.carrota 1.00000000 0.0000000
## Dicranella.spp. 1.00000000 0.0000000
## Dicranum.scoparium 1.00000000 0.0000000
## Epilobium.montanum 1.00000000 0.0000000
## Equisetum.arvense 1.00000000 0.0000000
## Equisteum.variegatum 1.00000000 0.0000000
## Erigeron.acer 1.00000000 0.0000000
## Euphrasia.agg 0.14093960 0.8590604
## Festuca.ovina 1.00000000 0.0000000
## Festuca.rubra 1.00000000 0.0000000
## Festuca.rubra.agg. 1.00000000 0.0000000
## Filipendula.ulmaria 1.00000000 0.0000000
## Fissidens.adianthoides 1.00000000 0.0000000
## Fissidens.dubius 1.00000000 0.0000000
## Fissidens.exilis 1.00000000 0.0000000
## Fragaria.vesca 1.00000000 0.0000000
## Galium.aparine 1.00000000 0.0000000
## Galium.arvense 1.00000000 0.0000000
## Galium.saxatile 1.00000000 0.0000000
## Galium.verum 1.00000000 0.0000000
## Geum.urbanum 1.00000000 0.0000000
## Glechoma.hederacea 1.00000000 0.0000000
## Helicotrichon.spp. 1.00000000 0.0000000
## Heracleum.sphondylium 1.00000000 0.0000000
## Hieracium.spp. 1.00000000 0.0000000
## Holcus.spp. 0.32800000 0.6720000
## Holcus.lanatus 1.00000000 0.0000000
## Holcus.mollis 1.00000000 0.0000000
## Homalothecium.lutescens 1.00000000 0.0000000
## Hylocomium.splendens 1.00000000 0.0000000
## Hypericum.perforatum 1.00000000 0.0000000
## Hypnum.cupressiforme 0.18367347 0.8163265
## Hypnum.imponens 1.00000000 0.0000000
## Hypnum.jutlandicum 1.00000000 0.0000000
## Hypochaeris.radicata 1.00000000 0.0000000
## Kindbergia.praelonga 1.00000000 0.0000000
## Lathyrus.pratensis 1.00000000 0.0000000
## Leontodon.hispidus 1.00000000 0.0000000
## Leontodon.saxatilis 1.00000000 0.0000000
## Leucanthemum.vulgare 1.00000000 0.0000000
## Linum.catharticum 0.06976744 0.9302326
## Lolium.perenne 1.00000000 0.0000000
## Lophocolea.semiteres 1.00000000 0.0000000
## Lotus.corniculatus 1.00000000 0.0000000
## Luzula.multiflora 1.00000000 0.0000000
## Lysimachia.maritima 1.00000000 0.0000000
## Medicago.lupulina 1.00000000 0.0000000
## Myosotis.arvensis 1.00000000 0.0000000
## Ononis.repens 1.00000000 0.0000000
## Oxalis.acetosella 1.00000000 0.0000000
## Pastinaca.sativa 1.00000000 0.0000000
## Pentaglottis.sempervirens 1.00000000 0.0000000
## Pillosella.officinarum 0.28182807 0.7181719
## Plantago.coronopus 1.00000000 0.0000000
## Plantago.lanceolata 0.78260870 0.2173913
## Pleurozium.schreberi 1.00000000 0.0000000
## Poa.annua 1.00000000 0.0000000
## Poa.spp. 1.00000000 0.0000000
## Polytrichum.commune 1.00000000 0.0000000
## Polytrichum.commune.agg. 1.00000000 0.0000000
## Polytrichum.formosum 1.00000000 0.0000000
## Potentilla.reptans 1.00000000 0.0000000
## Prunella.vulgaris 1.00000000 0.0000000
## Pseudoscleropidum.purum 1.00000000 0.0000000
## Pteridium.aquilinum 1.00000000 0.0000000
## Ranunculus.acris 1.00000000 0.0000000
## Ranunculus.repens 1.00000000 0.0000000
## Reseda.lutea 1.00000000 0.0000000
## Rhinanthus.minor 1.00000000 0.0000000
## Rhizomnium.punctatum 1.00000000 0.0000000
## Rhytidadelphus.squarrosus 0.33333333 0.6666667
## Rhytidadelphus.triquetris 1.00000000 0.0000000
## Rubus.fruticosus 1.00000000 0.0000000
## Sanguisorba.minor.spp.minor 1.00000000 0.0000000
## Saniona.uncinata 1.00000000 0.0000000
## Sedum.anglicum 1.00000000 0.0000000
## Senecio.jacobaea 1.00000000 0.0000000
## Senecio.vulgaris 1.00000000 0.0000000
## Sonchus.arvensis 1.00000000 0.0000000
## Stachys.sylvatica 1.00000000 0.0000000
## Stellaria.apetala 1.00000000 0.0000000
## Taraxacum.agg. 1.00000000 0.0000000
## Thuidium.tamariscinum 1.00000000 0.0000000
## Thymus.polytrichus 0.05878440 0.9412156
## Trichostomum.crispulum 0.14893617 0.8510638
## Trifolium.campestre 1.00000000 0.0000000
## Trifolium.dubium 0.01788421 0.9821158
## Trifolium.pratense 1.00000000 0.0000000
## Trifolium.repens 1.00000000 0.0000000
## Trisetum.flavescens 1.00000000 0.0000000
## Tussilago.farfara 1.00000000 0.0000000
## Urtica.diocia 1.00000000 0.0000000
## Veronica.officinalis 1.00000000 0.0000000
## Vicia.sativa 1.00000000 0.0000000
## Viola.riviniana 1.00000000 0.0000000
## Weissia.controversa 1.00000000 0.0000000
## Zygodon.stirtonii 1.00000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.2000000000 0.0000000
## Agrostis.canina 0.0250000000 0.0000000
## Alchemilla.mollis 0.0250000000 0.0000000
## Alopercus.pratensis 0.0250000000 0.0000000
## Angelica.sylvestris 0.0500000000 0.0000000
## Anthoxanthum.odoratum 0.1500000000 0.0000000
## Anthyllis.vulneraria 0.1250000000 0.0000000
## Aphanes.arvensis 0.0750000000 0.0000000
## Arrhenatherum.elatius 0.1083333333 0.3809524
## Atrichum.undulatum 0.0500000000 0.0000000
## Avenula.pratensis 0.0250000000 0.0000000
## Bellis.perennis 0.3000000000 0.0000000
## Betula.pubescens 0.0250000000 0.0000000
## Blackstonia.perfoliata 0.0250000000 0.0000000
## Brachythecium.albicans 0.0250000000 0.0000000
## Brachythecium.glareosum 0.0250000000 0.0000000
## Brachythecium.mildeanum 0.1000000000 0.0000000
## Brachythecium.rutabulum 0.1500000000 0.0000000
## Briza.media 0.0750000000 0.0000000
## Bromus.hordeaceus 0.0250000000 0.0000000
## Bryum.c.f..caespiticium 0.0250000000 0.0000000
## Bryum.c.f..pallescens 0.0012195122 0.9756098
## Bryum.capillare 0.0250000000 0.0000000
## Bryum.spp. 0.0750000000 0.0000000
## Calliergonella.cupsidata 0.3750000000 0.0000000
## Calypogeia.arguta 0.2000000000 0.0000000
## Campanula.rotundifolia 0.0250000000 0.0000000
## Carex.distans 0.0500000000 0.0000000
## Carex.flacca 0.1750000000 0.0000000
## Carex.panicea 0.0250000000 0.0000000
## Carlina.vulgaris 0.0152542373 0.9322034
## Centaurea.nigra 0.0500000000 0.0000000
## Centaurium.erythraea 0.0500000000 0.0000000
## Centaurium.littorale 0.1000000000 0.0000000
## Centaurium.pulchellum 0.0250000000 0.0000000
## Cerastium.fontanum 0.0346153846 0.7692308
## Chamaenerion.angustifolium 0.0250000000 0.0000000
## Cirriphyllum.piliferum 0.0250000000 0.0000000
## Cirsium.arvense 0.0750000000 0.0000000
## Cirsium.palustre 0.0500000000 0.0000000
## Crepis.capillaris 0.0500000000 0.0000000
## Cynosurus.cristatus 0.0750000000 0.0000000
## Dactylis.glomerata 0.1500000000 0.0000000
## Dactylorhiza.fuchsii 0.0500000000 0.0000000
## Danthonia.decumbens 0.0250000000 0.0000000
## Daucus.carrota 0.0500000000 0.0000000
## Dicranella.spp. 0.0250000000 0.0000000
## Dicranum.scoparium 0.1250000000 0.0000000
## Epilobium.montanum 0.0750000000 0.0000000
## Equisetum.arvense 0.0750000000 0.0000000
## Equisteum.variegatum 0.0250000000 0.0000000
## Erigeron.acer 0.0500000000 0.0000000
## Euphrasia.agg 0.0352348993 0.8590604
## Festuca.ovina 0.1750000000 0.0000000
## Festuca.rubra 0.3750000000 0.0000000
## Festuca.rubra.agg. 0.0250000000 0.0000000
## Filipendula.ulmaria 0.0750000000 0.0000000
## Fissidens.adianthoides 0.0250000000 0.0000000
## Fissidens.dubius 0.0500000000 0.0000000
## Fissidens.exilis 0.0250000000 0.0000000
## Fragaria.vesca 0.1500000000 0.0000000
## Galium.aparine 0.0250000000 0.0000000
## Galium.arvense 0.0250000000 0.0000000
## Galium.saxatile 0.0250000000 0.0000000
## Galium.verum 0.1000000000 0.0000000
## Geum.urbanum 0.0250000000 0.0000000
## Glechoma.hederacea 0.0250000000 0.0000000
## Helicotrichon.spp. 0.0250000000 0.0000000
## Heracleum.sphondylium 0.0750000000 0.0000000
## Hieracium.spp. 0.0250000000 0.0000000
## Holcus.spp. 0.1640000000 0.6720000
## Holcus.lanatus 0.3000000000 0.0000000
## Holcus.mollis 0.1500000000 0.0000000
## Homalothecium.lutescens 0.0500000000 0.0000000
## Hylocomium.splendens 0.1750000000 0.0000000
## Hypericum.perforatum 0.1500000000 0.0000000
## Hypnum.cupressiforme 0.0413265306 0.8163265
## Hypnum.imponens 0.0250000000 0.0000000
## Hypnum.jutlandicum 0.0750000000 0.0000000
## Hypochaeris.radicata 0.0250000000 0.0000000
## Kindbergia.praelonga 0.1500000000 0.0000000
## Lathyrus.pratensis 0.0750000000 0.0000000
## Leontodon.hispidus 0.1250000000 0.0000000
## Leontodon.saxatilis 0.0250000000 0.0000000
## Leucanthemum.vulgare 0.3500000000 0.0000000
## Linum.catharticum 0.0069767442 0.9302326
## Lolium.perenne 0.1000000000 0.0000000
## Lophocolea.semiteres 0.0250000000 0.0000000
## Lotus.corniculatus 0.4500000000 0.0000000
## Luzula.multiflora 0.0250000000 0.0000000
## Lysimachia.maritima 0.0500000000 0.0000000
## Medicago.lupulina 0.1250000000 0.0000000
## Myosotis.arvensis 0.1250000000 0.0000000
## Ononis.repens 0.2000000000 0.0000000
## Oxalis.acetosella 0.0250000000 0.0000000
## Pastinaca.sativa 0.0250000000 0.0000000
## Pentaglottis.sempervirens 0.0250000000 0.0000000
## Pillosella.officinarum 0.0775027203 0.7181719
## Plantago.coronopus 0.1000000000 0.0000000
## Plantago.lanceolata 0.2347826087 0.2173913
## Pleurozium.schreberi 0.1000000000 0.0000000
## Poa.annua 0.0750000000 0.0000000
## Poa.spp. 0.0250000000 0.0000000
## Polytrichum.commune 0.0250000000 0.0000000
## Polytrichum.commune.agg. 0.0250000000 0.0000000
## Polytrichum.formosum 0.0250000000 0.0000000
## Potentilla.reptans 0.1000000000 0.0000000
## Prunella.vulgaris 0.1250000000 0.0000000
## Pseudoscleropidum.purum 0.2000000000 0.0000000
## Pteridium.aquilinum 0.0750000000 0.0000000
## Ranunculus.acris 0.0250000000 0.0000000
## Ranunculus.repens 0.0750000000 0.0000000
## Reseda.lutea 0.0250000000 0.0000000
## Rhinanthus.minor 0.0250000000 0.0000000
## Rhizomnium.punctatum 0.0250000000 0.0000000
## Rhytidadelphus.squarrosus 0.1000000000 0.6666667
## Rhytidadelphus.triquetris 0.0500000000 0.0000000
## Rubus.fruticosus 0.0500000000 0.0000000
## Sanguisorba.minor.spp.minor 0.0500000000 0.0000000
## Saniona.uncinata 0.0500000000 0.0000000
## Sedum.anglicum 0.0250000000 0.0000000
## Senecio.jacobaea 0.0500000000 0.0000000
## Senecio.vulgaris 0.0250000000 0.0000000
## Sonchus.arvensis 0.0250000000 0.0000000
## Stachys.sylvatica 0.0500000000 0.0000000
## Stellaria.apetala 0.0250000000 0.0000000
## Taraxacum.agg. 0.2750000000 0.0000000
## Thuidium.tamariscinum 0.0750000000 0.0000000
## Thymus.polytrichus 0.0102872703 0.9412156
## Trichostomum.crispulum 0.0186170213 0.8510638
## Trifolium.campestre 0.1750000000 0.0000000
## Trifolium.dubium 0.0004471052 0.9821158
## Trifolium.pratense 0.1000000000 0.0000000
## Trifolium.repens 0.1250000000 0.0000000
## Trisetum.flavescens 0.1000000000 0.0000000
## Tussilago.farfara 0.0750000000 0.0000000
## Urtica.diocia 0.1000000000 0.0000000
## Veronica.officinalis 0.0250000000 0.0000000
## Vicia.sativa 0.0250000000 0.0000000
## Viola.riviniana 0.0250000000 0.0000000
## Weissia.controversa 0.0250000000 0.0000000
## Zygodon.stirtonii 0.0250000000 0.0000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 2 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 2
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 2 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 2
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 2 1
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 2 1
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 2 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 2
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 2
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 2
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 2 2
## Trifolium.campestre Trifolium.dubium
## 1 2
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.2000000 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 0.0250000 0.0250000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.0500000 0.1500000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.1250000 0.0750000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.3809524 0.0500000
## Avenula.pratensis Bellis.perennis
## 0.0250000 0.3000000
## Betula.pubescens Blackstonia.perfoliata
## 0.0250000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.1000000 0.1500000
## Briza.media Bromus.hordeaceus
## 0.0750000 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.0250000 0.9756098
## Bryum.capillare Bryum.spp.
## 0.0250000 0.0750000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.3750000 0.2000000
## Campanula.rotundifolia Carex.distans
## 0.0250000 0.0500000
## Carex.flacca Carex.panicea
## 0.1750000 0.0250000
## Carlina.vulgaris Centaurea.nigra
## 0.9322034 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.1000000
## Centaurium.pulchellum Cerastium.fontanum
## 0.0250000 0.7692308
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 0.0250000
## Cirsium.arvense Cirsium.palustre
## 0.0750000 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.0500000 0.0750000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.0500000
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.1250000
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.0750000
## Equisteum.variegatum Erigeron.acer
## 0.0250000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.8590604 0.1750000
## Festuca.rubra Festuca.rubra.agg.
## 0.3750000 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.0750000 0.0250000
## Fissidens.dubius Fissidens.exilis
## 0.0500000 0.0250000
## Fragaria.vesca Galium.aparine
## 0.1500000 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.1000000 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 0.0250000
## Holcus.spp. Holcus.lanatus
## 0.6720000 0.3000000
## Holcus.mollis Homalothecium.lutescens
## 0.1500000 0.0500000
## Hylocomium.splendens Hypericum.perforatum
## 0.1750000 0.1500000
## Hypnum.cupressiforme Hypnum.imponens
## 0.8163265 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 0.0250000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.0750000
## Leontodon.hispidus Leontodon.saxatilis
## 0.1250000 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.3500000 0.9302326
## Lolium.perenne Lophocolea.semiteres
## 0.1000000 0.0250000
## Lotus.corniculatus Luzula.multiflora
## 0.4500000 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.0500000 0.1250000
## Myosotis.arvensis Ononis.repens
## 0.1250000 0.2000000
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.7181719
## Plantago.coronopus Plantago.lanceolata
## 0.1000000 0.2347826
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.0750000
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.1000000 0.1250000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.2000000 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.0750000
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.6666667
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.0500000 0.0500000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.0500000 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.0500000
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.0500000 0.0250000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.2750000 0.0750000
## Thymus.polytrichus Trichostomum.crispulum
## 0.9412156 0.8510638
## Trifolium.campestre Trifolium.dubium
## 0.1750000 0.9821158
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.1250000
## Trisetum.flavescens Tussilago.farfara
## 0.1000000 0.0750000
## Urtica.diocia Veronica.officinalis
## 0.1000000 0.0250000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 0.0250000 0.0250000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1.000 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 1.000 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.198 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 1.000
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 0.020
## Bryum.capillare Bryum.spp.
## 1.000 1.000
## Calliergonella.cupsidata Calypogeia.arguta
## 0.908 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.987 1.000
## Carlina.vulgaris Centaurea.nigra
## 0.028 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 0.168
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.075 1.000
## Festuca.rubra Festuca.rubra.agg.
## 0.899 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 1.000 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.236 0.948
## Holcus.mollis Homalothecium.lutescens
## 0.967 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.977 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 0.140 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.936 0.060
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.764 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 0.905
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.118
## Plantago.coronopus Plantago.lanceolata
## 1.000 1.000
## Pleurozium.schreberi Poa.annua
## 1.000 1.000
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1.000 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 0.200
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.024 0.118
## Trifolium.campestre Trifolium.dubium
## 1.000 0.023
## Trifolium.pratense Trifolium.repens
## 1.000 1.000
## Trisetum.flavescens Tussilago.farfara
## 1.000 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Trifolium dubium has a high indval score of 0.982 and a low p value of 0.021. This is #the indicator species for Spinel.
clustStaurolite <-cut(PlantChemistry1$Staurolite, 5, labels=FALSE)
StauroliteIndval <- indval(as.matrix(PlantSpecies1), clustStaurolite, type= "long")
gr <- StauroliteIndval$maxcls[StauroliteIndval$pval<=0.05]
iv <- StauroliteIndval$indcls[StauroliteIndval$pval<=0.05]
pv <- StauroliteIndval$pval[StauroliteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[StauroliteIndval$pval<=0.05]
StauroliteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
StauroliteIndvalsummary <- StauroliteIndvalsummary [order
(StauroliteIndvalsummary$group, -StauroliteIndvalsummary$indval),]
print(StauroliteIndvalsummary)
## [1] group indval pvalue freq
## <0 rows> (or 0-length row.names)
summary(indval(as.matrix(PlantSpecies1), clustStaurolite))
## [1] cluster indicator_value probability
## <0 rows> (or 0-length row.names)
##
## Sum of probabilities = 142
##
## Sum of Indicator Values = 13.24
##
## Sum of Significant Indicator Values = 0
##
## Number of Significant Indicators = 0
##
## Significant Indicator Distribution
## < table of extent 0 >
print(indval(as.matrix(PlantSpecies1), clustStaurolite))
## $relfrq
## 3
## Agrostis.spp. 0.19512195
## Agrostis.canina 0.02439024
## Alchemilla.mollis 0.02439024
## Alopercus.pratensis 0.02439024
## Angelica.sylvestris 0.04878049
## Anthoxanthum.odoratum 0.14634146
## Anthyllis.vulneraria 0.12195122
## Aphanes.arvensis 0.07317073
## Arrhenatherum.elatius 0.19512195
## Atrichum.undulatum 0.04878049
## Avenula.pratensis 0.02439024
## Bellis.perennis 0.29268293
## Betula.pubescens 0.02439024
## Blackstonia.perfoliata 0.02439024
## Brachythecium.albicans 0.02439024
## Brachythecium.glareosum 0.02439024
## Brachythecium.mildeanum 0.09756098
## Brachythecium.rutabulum 0.14634146
## Briza.media 0.07317073
## Bromus.hordeaceus 0.02439024
## Bryum.c.f..caespiticium 0.02439024
## Bryum.c.f..pallescens 0.07317073
## Bryum.capillare 0.02439024
## Bryum.spp. 0.07317073
## Calliergonella.cupsidata 0.36585366
## Calypogeia.arguta 0.19512195
## Campanula.rotundifolia 0.02439024
## Carex.distans 0.04878049
## Carex.flacca 0.17073171
## Carex.panicea 0.02439024
## Carlina.vulgaris 0.24390244
## Centaurea.nigra 0.04878049
## Centaurium.erythraea 0.04878049
## Centaurium.littorale 0.09756098
## Centaurium.pulchellum 0.02439024
## Cerastium.fontanum 0.17073171
## Chamaenerion.angustifolium 0.02439024
## Cirriphyllum.piliferum 0.02439024
## Cirsium.arvense 0.07317073
## Cirsium.palustre 0.04878049
## Crepis.capillaris 0.04878049
## Cynosurus.cristatus 0.07317073
## Dactylis.glomerata 0.14634146
## Dactylorhiza.fuchsii 0.04878049
## Danthonia.decumbens 0.02439024
## Daucus.carrota 0.04878049
## Dicranella.spp. 0.02439024
## Dicranum.scoparium 0.12195122
## Epilobium.montanum 0.07317073
## Equisetum.arvense 0.07317073
## Equisteum.variegatum 0.02439024
## Erigeron.acer 0.04878049
## Euphrasia.agg 0.26829268
## Festuca.ovina 0.17073171
## Festuca.rubra 0.36585366
## Festuca.rubra.agg. 0.02439024
## Filipendula.ulmaria 0.07317073
## Fissidens.adianthoides 0.02439024
## Fissidens.dubius 0.04878049
## Fissidens.exilis 0.02439024
## Fragaria.vesca 0.14634146
## Galium.aparine 0.02439024
## Galium.arvense 0.02439024
## Galium.saxatile 0.02439024
## Galium.verum 0.09756098
## Geum.urbanum 0.02439024
## Glechoma.hederacea 0.02439024
## Helicotrichon.spp. 0.02439024
## Heracleum.sphondylium 0.07317073
## Hieracium.spp. 0.02439024
## Holcus.spp. 0.51219512
## Holcus.lanatus 0.29268293
## Holcus.mollis 0.14634146
## Homalothecium.lutescens 0.04878049
## Hylocomium.splendens 0.17073171
## Hypericum.perforatum 0.14634146
## Hypnum.cupressiforme 0.24390244
## Hypnum.imponens 0.02439024
## Hypnum.jutlandicum 0.07317073
## Hypochaeris.radicata 0.02439024
## Kindbergia.praelonga 0.14634146
## Lathyrus.pratensis 0.07317073
## Leontodon.hispidus 0.12195122
## Leontodon.saxatilis 0.02439024
## Leucanthemum.vulgare 0.34146341
## Linum.catharticum 0.12195122
## Lolium.perenne 0.09756098
## Lophocolea.semiteres 0.02439024
## Lotus.corniculatus 0.43902439
## Luzula.multiflora 0.02439024
## Lysimachia.maritima 0.04878049
## Medicago.lupulina 0.12195122
## Myosotis.arvensis 0.12195122
## Ononis.repens 0.19512195
## Oxalis.acetosella 0.02439024
## Pastinaca.sativa 0.02439024
## Pentaglottis.sempervirens 0.02439024
## Pillosella.officinarum 0.29268293
## Plantago.coronopus 0.09756098
## Plantago.lanceolata 0.31707317
## Pleurozium.schreberi 0.09756098
## Poa.annua 0.07317073
## Poa.spp. 0.02439024
## Polytrichum.commune 0.02439024
## Polytrichum.commune.agg. 0.02439024
## Polytrichum.formosum 0.02439024
## Potentilla.reptans 0.09756098
## Prunella.vulgaris 0.12195122
## Pseudoscleropidum.purum 0.19512195
## Pteridium.aquilinum 0.07317073
## Ranunculus.acris 0.02439024
## Ranunculus.repens 0.07317073
## Reseda.lutea 0.02439024
## Rhinanthus.minor 0.02439024
## Rhizomnium.punctatum 0.02439024
## Rhytidadelphus.squarrosus 0.31707317
## Rhytidadelphus.triquetris 0.04878049
## Rubus.fruticosus 0.04878049
## Sanguisorba.minor.spp.minor 0.04878049
## Saniona.uncinata 0.04878049
## Sedum.anglicum 0.02439024
## Senecio.jacobaea 0.04878049
## Senecio.vulgaris 0.02439024
## Sonchus.arvensis 0.02439024
## Stachys.sylvatica 0.04878049
## Stellaria.apetala 0.02439024
## Taraxacum.agg. 0.26829268
## Thuidium.tamariscinum 0.07317073
## Thymus.polytrichus 0.19512195
## Trichostomum.crispulum 0.14634146
## Trifolium.campestre 0.17073171
## Trifolium.dubium 0.04878049
## Trifolium.pratense 0.09756098
## Trifolium.repens 0.12195122
## Trisetum.flavescens 0.09756098
## Tussilago.farfara 0.07317073
## Urtica.diocia 0.09756098
## Veronica.officinalis 0.02439024
## Vicia.sativa 0.02439024
## Viola.riviniana 0.02439024
## Weissia.controversa 0.02439024
## Zygodon.stirtonii 0.02439024
##
## $relabu
## 3
## Agrostis.spp. 1
## Agrostis.canina 1
## Alchemilla.mollis 1
## Alopercus.pratensis 1
## Angelica.sylvestris 1
## Anthoxanthum.odoratum 1
## Anthyllis.vulneraria 1
## Aphanes.arvensis 1
## Arrhenatherum.elatius 1
## Atrichum.undulatum 1
## Avenula.pratensis 1
## Bellis.perennis 1
## Betula.pubescens 1
## Blackstonia.perfoliata 1
## Brachythecium.albicans 1
## Brachythecium.glareosum 1
## Brachythecium.mildeanum 1
## Brachythecium.rutabulum 1
## Briza.media 1
## Bromus.hordeaceus 1
## Bryum.c.f..caespiticium 1
## Bryum.c.f..pallescens 1
## Bryum.capillare 1
## Bryum.spp. 1
## Calliergonella.cupsidata 1
## Calypogeia.arguta 1
## Campanula.rotundifolia 1
## Carex.distans 1
## Carex.flacca 1
## Carex.panicea 1
## Carlina.vulgaris 1
## Centaurea.nigra 1
## Centaurium.erythraea 1
## Centaurium.littorale 1
## Centaurium.pulchellum 1
## Cerastium.fontanum 1
## Chamaenerion.angustifolium 1
## Cirriphyllum.piliferum 1
## Cirsium.arvense 1
## Cirsium.palustre 1
## Crepis.capillaris 1
## Cynosurus.cristatus 1
## Dactylis.glomerata 1
## Dactylorhiza.fuchsii 1
## Danthonia.decumbens 1
## Daucus.carrota 1
## Dicranella.spp. 1
## Dicranum.scoparium 1
## Epilobium.montanum 1
## Equisetum.arvense 1
## Equisteum.variegatum 1
## Erigeron.acer 1
## Euphrasia.agg 1
## Festuca.ovina 1
## Festuca.rubra 1
## Festuca.rubra.agg. 1
## Filipendula.ulmaria 1
## Fissidens.adianthoides 1
## Fissidens.dubius 1
## Fissidens.exilis 1
## Fragaria.vesca 1
## Galium.aparine 1
## Galium.arvense 1
## Galium.saxatile 1
## Galium.verum 1
## Geum.urbanum 1
## Glechoma.hederacea 1
## Helicotrichon.spp. 1
## Heracleum.sphondylium 1
## Hieracium.spp. 1
## Holcus.spp. 1
## Holcus.lanatus 1
## Holcus.mollis 1
## Homalothecium.lutescens 1
## Hylocomium.splendens 1
## Hypericum.perforatum 1
## Hypnum.cupressiforme 1
## Hypnum.imponens 1
## Hypnum.jutlandicum 1
## Hypochaeris.radicata 1
## Kindbergia.praelonga 1
## Lathyrus.pratensis 1
## Leontodon.hispidus 1
## Leontodon.saxatilis 1
## Leucanthemum.vulgare 1
## Linum.catharticum 1
## Lolium.perenne 1
## Lophocolea.semiteres 1
## Lotus.corniculatus 1
## Luzula.multiflora 1
## Lysimachia.maritima 1
## Medicago.lupulina 1
## Myosotis.arvensis 1
## Ononis.repens 1
## Oxalis.acetosella 1
## Pastinaca.sativa 1
## Pentaglottis.sempervirens 1
## Pillosella.officinarum 1
## Plantago.coronopus 1
## Plantago.lanceolata 1
## Pleurozium.schreberi 1
## Poa.annua 1
## Poa.spp. 1
## Polytrichum.commune 1
## Polytrichum.commune.agg. 1
## Polytrichum.formosum 1
## Potentilla.reptans 1
## Prunella.vulgaris 1
## Pseudoscleropidum.purum 1
## Pteridium.aquilinum 1
## Ranunculus.acris 1
## Ranunculus.repens 1
## Reseda.lutea 1
## Rhinanthus.minor 1
## Rhizomnium.punctatum 1
## Rhytidadelphus.squarrosus 1
## Rhytidadelphus.triquetris 1
## Rubus.fruticosus 1
## Sanguisorba.minor.spp.minor 1
## Saniona.uncinata 1
## Sedum.anglicum 1
## Senecio.jacobaea 1
## Senecio.vulgaris 1
## Sonchus.arvensis 1
## Stachys.sylvatica 1
## Stellaria.apetala 1
## Taraxacum.agg. 1
## Thuidium.tamariscinum 1
## Thymus.polytrichus 1
## Trichostomum.crispulum 1
## Trifolium.campestre 1
## Trifolium.dubium 1
## Trifolium.pratense 1
## Trifolium.repens 1
## Trisetum.flavescens 1
## Tussilago.farfara 1
## Urtica.diocia 1
## Veronica.officinalis 1
## Vicia.sativa 1
## Viola.riviniana 1
## Weissia.controversa 1
## Zygodon.stirtonii 1
##
## $indval
## 3
## Agrostis.spp. 0.19512195
## Agrostis.canina 0.02439024
## Alchemilla.mollis 0.02439024
## Alopercus.pratensis 0.02439024
## Angelica.sylvestris 0.04878049
## Anthoxanthum.odoratum 0.14634146
## Anthyllis.vulneraria 0.12195122
## Aphanes.arvensis 0.07317073
## Arrhenatherum.elatius 0.19512195
## Atrichum.undulatum 0.04878049
## Avenula.pratensis 0.02439024
## Bellis.perennis 0.29268293
## Betula.pubescens 0.02439024
## Blackstonia.perfoliata 0.02439024
## Brachythecium.albicans 0.02439024
## Brachythecium.glareosum 0.02439024
## Brachythecium.mildeanum 0.09756098
## Brachythecium.rutabulum 0.14634146
## Briza.media 0.07317073
## Bromus.hordeaceus 0.02439024
## Bryum.c.f..caespiticium 0.02439024
## Bryum.c.f..pallescens 0.07317073
## Bryum.capillare 0.02439024
## Bryum.spp. 0.07317073
## Calliergonella.cupsidata 0.36585366
## Calypogeia.arguta 0.19512195
## Campanula.rotundifolia 0.02439024
## Carex.distans 0.04878049
## Carex.flacca 0.17073171
## Carex.panicea 0.02439024
## Carlina.vulgaris 0.24390244
## Centaurea.nigra 0.04878049
## Centaurium.erythraea 0.04878049
## Centaurium.littorale 0.09756098
## Centaurium.pulchellum 0.02439024
## Cerastium.fontanum 0.17073171
## Chamaenerion.angustifolium 0.02439024
## Cirriphyllum.piliferum 0.02439024
## Cirsium.arvense 0.07317073
## Cirsium.palustre 0.04878049
## Crepis.capillaris 0.04878049
## Cynosurus.cristatus 0.07317073
## Dactylis.glomerata 0.14634146
## Dactylorhiza.fuchsii 0.04878049
## Danthonia.decumbens 0.02439024
## Daucus.carrota 0.04878049
## Dicranella.spp. 0.02439024
## Dicranum.scoparium 0.12195122
## Epilobium.montanum 0.07317073
## Equisetum.arvense 0.07317073
## Equisteum.variegatum 0.02439024
## Erigeron.acer 0.04878049
## Euphrasia.agg 0.26829268
## Festuca.ovina 0.17073171
## Festuca.rubra 0.36585366
## Festuca.rubra.agg. 0.02439024
## Filipendula.ulmaria 0.07317073
## Fissidens.adianthoides 0.02439024
## Fissidens.dubius 0.04878049
## Fissidens.exilis 0.02439024
## Fragaria.vesca 0.14634146
## Galium.aparine 0.02439024
## Galium.arvense 0.02439024
## Galium.saxatile 0.02439024
## Galium.verum 0.09756098
## Geum.urbanum 0.02439024
## Glechoma.hederacea 0.02439024
## Helicotrichon.spp. 0.02439024
## Heracleum.sphondylium 0.07317073
## Hieracium.spp. 0.02439024
## Holcus.spp. 0.51219512
## Holcus.lanatus 0.29268293
## Holcus.mollis 0.14634146
## Homalothecium.lutescens 0.04878049
## Hylocomium.splendens 0.17073171
## Hypericum.perforatum 0.14634146
## Hypnum.cupressiforme 0.24390244
## Hypnum.imponens 0.02439024
## Hypnum.jutlandicum 0.07317073
## Hypochaeris.radicata 0.02439024
## Kindbergia.praelonga 0.14634146
## Lathyrus.pratensis 0.07317073
## Leontodon.hispidus 0.12195122
## Leontodon.saxatilis 0.02439024
## Leucanthemum.vulgare 0.34146341
## Linum.catharticum 0.12195122
## Lolium.perenne 0.09756098
## Lophocolea.semiteres 0.02439024
## Lotus.corniculatus 0.43902439
## Luzula.multiflora 0.02439024
## Lysimachia.maritima 0.04878049
## Medicago.lupulina 0.12195122
## Myosotis.arvensis 0.12195122
## Ononis.repens 0.19512195
## Oxalis.acetosella 0.02439024
## Pastinaca.sativa 0.02439024
## Pentaglottis.sempervirens 0.02439024
## Pillosella.officinarum 0.29268293
## Plantago.coronopus 0.09756098
## Plantago.lanceolata 0.31707317
## Pleurozium.schreberi 0.09756098
## Poa.annua 0.07317073
## Poa.spp. 0.02439024
## Polytrichum.commune 0.02439024
## Polytrichum.commune.agg. 0.02439024
## Polytrichum.formosum 0.02439024
## Potentilla.reptans 0.09756098
## Prunella.vulgaris 0.12195122
## Pseudoscleropidum.purum 0.19512195
## Pteridium.aquilinum 0.07317073
## Ranunculus.acris 0.02439024
## Ranunculus.repens 0.07317073
## Reseda.lutea 0.02439024
## Rhinanthus.minor 0.02439024
## Rhizomnium.punctatum 0.02439024
## Rhytidadelphus.squarrosus 0.31707317
## Rhytidadelphus.triquetris 0.04878049
## Rubus.fruticosus 0.04878049
## Sanguisorba.minor.spp.minor 0.04878049
## Saniona.uncinata 0.04878049
## Sedum.anglicum 0.02439024
## Senecio.jacobaea 0.04878049
## Senecio.vulgaris 0.02439024
## Sonchus.arvensis 0.02439024
## Stachys.sylvatica 0.04878049
## Stellaria.apetala 0.02439024
## Taraxacum.agg. 0.26829268
## Thuidium.tamariscinum 0.07317073
## Thymus.polytrichus 0.19512195
## Trichostomum.crispulum 0.14634146
## Trifolium.campestre 0.17073171
## Trifolium.dubium 0.04878049
## Trifolium.pratense 0.09756098
## Trifolium.repens 0.12195122
## Trisetum.flavescens 0.09756098
## Tussilago.farfara 0.07317073
## Urtica.diocia 0.09756098
## Veronica.officinalis 0.02439024
## Vicia.sativa 0.02439024
## Viola.riviniana 0.02439024
## Weissia.controversa 0.02439024
## Zygodon.stirtonii 0.02439024
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 1
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 1
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 1 1
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.19512195 0.02439024
## Alchemilla.mollis Alopercus.pratensis
## 0.02439024 0.02439024
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.04878049 0.14634146
## Anthyllis.vulneraria Aphanes.arvensis
## 0.12195122 0.07317073
## Arrhenatherum.elatius Atrichum.undulatum
## 0.19512195 0.04878049
## Avenula.pratensis Bellis.perennis
## 0.02439024 0.29268293
## Betula.pubescens Blackstonia.perfoliata
## 0.02439024 0.02439024
## Brachythecium.albicans Brachythecium.glareosum
## 0.02439024 0.02439024
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.09756098 0.14634146
## Briza.media Bromus.hordeaceus
## 0.07317073 0.02439024
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.02439024 0.07317073
## Bryum.capillare Bryum.spp.
## 0.02439024 0.07317073
## Calliergonella.cupsidata Calypogeia.arguta
## 0.36585366 0.19512195
## Campanula.rotundifolia Carex.distans
## 0.02439024 0.04878049
## Carex.flacca Carex.panicea
## 0.17073171 0.02439024
## Carlina.vulgaris Centaurea.nigra
## 0.24390244 0.04878049
## Centaurium.erythraea Centaurium.littorale
## 0.04878049 0.09756098
## Centaurium.pulchellum Cerastium.fontanum
## 0.02439024 0.17073171
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.02439024 0.02439024
## Cirsium.arvense Cirsium.palustre
## 0.07317073 0.04878049
## Crepis.capillaris Cynosurus.cristatus
## 0.04878049 0.07317073
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.14634146 0.04878049
## Danthonia.decumbens Daucus.carrota
## 0.02439024 0.04878049
## Dicranella.spp. Dicranum.scoparium
## 0.02439024 0.12195122
## Epilobium.montanum Equisetum.arvense
## 0.07317073 0.07317073
## Equisteum.variegatum Erigeron.acer
## 0.02439024 0.04878049
## Euphrasia.agg Festuca.ovina
## 0.26829268 0.17073171
## Festuca.rubra Festuca.rubra.agg.
## 0.36585366 0.02439024
## Filipendula.ulmaria Fissidens.adianthoides
## 0.07317073 0.02439024
## Fissidens.dubius Fissidens.exilis
## 0.04878049 0.02439024
## Fragaria.vesca Galium.aparine
## 0.14634146 0.02439024
## Galium.arvense Galium.saxatile
## 0.02439024 0.02439024
## Galium.verum Geum.urbanum
## 0.09756098 0.02439024
## Glechoma.hederacea Helicotrichon.spp.
## 0.02439024 0.02439024
## Heracleum.sphondylium Hieracium.spp.
## 0.07317073 0.02439024
## Holcus.spp. Holcus.lanatus
## 0.51219512 0.29268293
## Holcus.mollis Homalothecium.lutescens
## 0.14634146 0.04878049
## Hylocomium.splendens Hypericum.perforatum
## 0.17073171 0.14634146
## Hypnum.cupressiforme Hypnum.imponens
## 0.24390244 0.02439024
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.07317073 0.02439024
## Kindbergia.praelonga Lathyrus.pratensis
## 0.14634146 0.07317073
## Leontodon.hispidus Leontodon.saxatilis
## 0.12195122 0.02439024
## Leucanthemum.vulgare Linum.catharticum
## 0.34146341 0.12195122
## Lolium.perenne Lophocolea.semiteres
## 0.09756098 0.02439024
## Lotus.corniculatus Luzula.multiflora
## 0.43902439 0.02439024
## Lysimachia.maritima Medicago.lupulina
## 0.04878049 0.12195122
## Myosotis.arvensis Ononis.repens
## 0.12195122 0.19512195
## Oxalis.acetosella Pastinaca.sativa
## 0.02439024 0.02439024
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.02439024 0.29268293
## Plantago.coronopus Plantago.lanceolata
## 0.09756098 0.31707317
## Pleurozium.schreberi Poa.annua
## 0.09756098 0.07317073
## Poa.spp. Polytrichum.commune
## 0.02439024 0.02439024
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.02439024 0.02439024
## Potentilla.reptans Prunella.vulgaris
## 0.09756098 0.12195122
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.19512195 0.07317073
## Ranunculus.acris Ranunculus.repens
## 0.02439024 0.07317073
## Reseda.lutea Rhinanthus.minor
## 0.02439024 0.02439024
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.02439024 0.31707317
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.04878049 0.04878049
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.04878049 0.04878049
## Sedum.anglicum Senecio.jacobaea
## 0.02439024 0.04878049
## Senecio.vulgaris Sonchus.arvensis
## 0.02439024 0.02439024
## Stachys.sylvatica Stellaria.apetala
## 0.04878049 0.02439024
## Taraxacum.agg. Thuidium.tamariscinum
## 0.26829268 0.07317073
## Thymus.polytrichus Trichostomum.crispulum
## 0.19512195 0.14634146
## Trifolium.campestre Trifolium.dubium
## 0.17073171 0.04878049
## Trifolium.pratense Trifolium.repens
## 0.09756098 0.12195122
## Trisetum.flavescens Tussilago.farfara
## 0.09756098 0.07317073
## Urtica.diocia Veronica.officinalis
## 0.09756098 0.02439024
## Vicia.sativa Viola.riviniana
## 0.02439024 0.02439024
## Weissia.controversa Zygodon.stirtonii
## 0.02439024 0.02439024
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 1 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 1
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 1
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 1
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 1
## Festuca.rubra Festuca.rubra.agg.
## 1 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 1
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 1 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 1
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 1 1
## Trifolium.campestre Trifolium.dubium
## 1 1
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#This analysis was unsuccessful, will not report an indicator species for Staurolite.
clustValentinite <-cut(PlantChemistry1$Valentinite, 5, labels=FALSE)
ValentiniteIndval <- indval(as.matrix(PlantSpecies1), clustValentinite, type= "long")
gr <- ValentiniteIndval$maxcls[ValentiniteIndval$pval<=0.05]
iv <- ValentiniteIndval$indcls[ValentiniteIndval$pval<=0.05]
pv <- ValentiniteIndval$pval[ValentiniteIndval$pval<=0.05]
fr <- apply(PlantSpecies1[,-1]>0, 2, sum)[ValentiniteIndval$pval<=0.05]
ValentiniteIndvalsummary <- data.frame(group=gr, indval=iv, pvalue=pv, freq=fr)
ValentiniteIndvalsummary <- ValentiniteIndvalsummary [order
(ValentiniteIndvalsummary$group, -ValentiniteIndvalsummary$indval),]
print(ValentiniteIndvalsummary)
## group indval pvalue freq
## Carex.panicea 2 1.0000000 0.028 10
## Bryum.spp. 2 0.9876543 0.021 15
## Anthyllis.vulneraria 2 0.9701014 0.019 3
summary(indval(as.matrix(PlantSpecies1), clustValentinite))
## cluster indicator_value probability
## Carex.panicea 2 1.0000 0.016
## Bryum.spp. 2 0.9877 0.029
## Anthyllis.vulneraria 2 0.9701 0.032
##
## Sum of probabilities = 133.918
##
## Sum of Indicator Values = 18.66
##
## Sum of Significant Indicator Values = 2.96
##
## Number of Significant Indicators = 3
##
## Significant Indicator Distribution
##
## 2
## 3
print(indval(as.matrix(PlantSpecies1), clustValentinite))
## $relfrq
## 1 5
## Agrostis.spp. 0.200 0
## Agrostis.canina 0.025 0
## Alchemilla.mollis 0.025 0
## Alopercus.pratensis 0.025 0
## Angelica.sylvestris 0.050 0
## Anthoxanthum.odoratum 0.150 0
## Anthyllis.vulneraria 0.100 1
## Aphanes.arvensis 0.075 0
## Arrhenatherum.elatius 0.200 0
## Atrichum.undulatum 0.050 0
## Avenula.pratensis 0.025 0
## Bellis.perennis 0.275 1
## Betula.pubescens 0.025 0
## Blackstonia.perfoliata 0.025 0
## Brachythecium.albicans 0.025 0
## Brachythecium.glareosum 0.025 0
## Brachythecium.mildeanum 0.100 0
## Brachythecium.rutabulum 0.150 0
## Briza.media 0.075 0
## Bromus.hordeaceus 0.025 0
## Bryum.c.f..caespiticium 0.025 0
## Bryum.c.f..pallescens 0.075 0
## Bryum.capillare 0.025 0
## Bryum.spp. 0.050 1
## Calliergonella.cupsidata 0.375 0
## Calypogeia.arguta 0.200 0
## Campanula.rotundifolia 0.025 0
## Carex.distans 0.050 0
## Carex.flacca 0.175 0
## Carex.panicea 0.000 1
## Carlina.vulgaris 0.250 0
## Centaurea.nigra 0.050 0
## Centaurium.erythraea 0.050 0
## Centaurium.littorale 0.100 0
## Centaurium.pulchellum 0.025 0
## Cerastium.fontanum 0.175 0
## Chamaenerion.angustifolium 0.025 0
## Cirriphyllum.piliferum 0.025 0
## Cirsium.arvense 0.075 0
## Cirsium.palustre 0.050 0
## Crepis.capillaris 0.050 0
## Cynosurus.cristatus 0.075 0
## Dactylis.glomerata 0.150 0
## Dactylorhiza.fuchsii 0.050 0
## Danthonia.decumbens 0.025 0
## Daucus.carrota 0.050 0
## Dicranella.spp. 0.025 0
## Dicranum.scoparium 0.125 0
## Epilobium.montanum 0.075 0
## Equisetum.arvense 0.075 0
## Equisteum.variegatum 0.025 0
## Erigeron.acer 0.050 0
## Euphrasia.agg 0.275 0
## Festuca.ovina 0.175 0
## Festuca.rubra 0.350 1
## Festuca.rubra.agg. 0.025 0
## Filipendula.ulmaria 0.075 0
## Fissidens.adianthoides 0.025 0
## Fissidens.dubius 0.050 0
## Fissidens.exilis 0.025 0
## Fragaria.vesca 0.150 0
## Galium.aparine 0.025 0
## Galium.arvense 0.025 0
## Galium.saxatile 0.025 0
## Galium.verum 0.100 0
## Geum.urbanum 0.025 0
## Glechoma.hederacea 0.025 0
## Helicotrichon.spp. 0.025 0
## Heracleum.sphondylium 0.075 0
## Hieracium.spp. 0.025 0
## Holcus.spp. 0.525 0
## Holcus.lanatus 0.300 0
## Holcus.mollis 0.150 0
## Homalothecium.lutescens 0.050 0
## Hylocomium.splendens 0.175 0
## Hypericum.perforatum 0.150 0
## Hypnum.cupressiforme 0.250 0
## Hypnum.imponens 0.025 0
## Hypnum.jutlandicum 0.075 0
## Hypochaeris.radicata 0.025 0
## Kindbergia.praelonga 0.150 0
## Lathyrus.pratensis 0.075 0
## Leontodon.hispidus 0.125 0
## Leontodon.saxatilis 0.025 0
## Leucanthemum.vulgare 0.325 1
## Linum.catharticum 0.125 0
## Lolium.perenne 0.100 0
## Lophocolea.semiteres 0.025 0
## Lotus.corniculatus 0.450 0
## Luzula.multiflora 0.025 0
## Lysimachia.maritima 0.050 0
## Medicago.lupulina 0.125 0
## Myosotis.arvensis 0.125 0
## Ononis.repens 0.175 1
## Oxalis.acetosella 0.025 0
## Pastinaca.sativa 0.025 0
## Pentaglottis.sempervirens 0.025 0
## Pillosella.officinarum 0.300 0
## Plantago.coronopus 0.100 0
## Plantago.lanceolata 0.325 0
## Pleurozium.schreberi 0.100 0
## Poa.annua 0.050 1
## Poa.spp. 0.025 0
## Polytrichum.commune 0.025 0
## Polytrichum.commune.agg. 0.025 0
## Polytrichum.formosum 0.025 0
## Potentilla.reptans 0.100 0
## Prunella.vulgaris 0.125 0
## Pseudoscleropidum.purum 0.200 0
## Pteridium.aquilinum 0.075 0
## Ranunculus.acris 0.025 0
## Ranunculus.repens 0.075 0
## Reseda.lutea 0.025 0
## Rhinanthus.minor 0.025 0
## Rhizomnium.punctatum 0.025 0
## Rhytidadelphus.squarrosus 0.325 0
## Rhytidadelphus.triquetris 0.050 0
## Rubus.fruticosus 0.050 0
## Sanguisorba.minor.spp.minor 0.050 0
## Saniona.uncinata 0.050 0
## Sedum.anglicum 0.025 0
## Senecio.jacobaea 0.050 0
## Senecio.vulgaris 0.025 0
## Sonchus.arvensis 0.025 0
## Stachys.sylvatica 0.050 0
## Stellaria.apetala 0.025 0
## Taraxacum.agg. 0.275 0
## Thuidium.tamariscinum 0.075 0
## Thymus.polytrichus 0.175 1
## Trichostomum.crispulum 0.125 1
## Trifolium.campestre 0.175 0
## Trifolium.dubium 0.050 0
## Trifolium.pratense 0.100 0
## Trifolium.repens 0.125 0
## Trisetum.flavescens 0.100 0
## Tussilago.farfara 0.075 0
## Urtica.diocia 0.100 0
## Veronica.officinalis 0.025 0
## Vicia.sativa 0.025 0
## Viola.riviniana 0.025 0
## Weissia.controversa 0.025 0
## Zygodon.stirtonii 0.025 0
##
## $relabu
## 1 5
## Agrostis.spp. 1.00000000 0.0000000
## Agrostis.canina 1.00000000 0.0000000
## Alchemilla.mollis 1.00000000 0.0000000
## Alopercus.pratensis 1.00000000 0.0000000
## Angelica.sylvestris 1.00000000 0.0000000
## Anthoxanthum.odoratum 1.00000000 0.0000000
## Anthyllis.vulneraria 0.02989863 0.9701014
## Aphanes.arvensis 1.00000000 0.0000000
## Arrhenatherum.elatius 1.00000000 0.0000000
## Atrichum.undulatum 1.00000000 0.0000000
## Avenula.pratensis 1.00000000 0.0000000
## Bellis.perennis 0.63302752 0.3669725
## Betula.pubescens 1.00000000 0.0000000
## Blackstonia.perfoliata 1.00000000 0.0000000
## Brachythecium.albicans 1.00000000 0.0000000
## Brachythecium.glareosum 1.00000000 0.0000000
## Brachythecium.mildeanum 1.00000000 0.0000000
## Brachythecium.rutabulum 1.00000000 0.0000000
## Briza.media 1.00000000 0.0000000
## Bromus.hordeaceus 1.00000000 0.0000000
## Bryum.c.f..caespiticium 1.00000000 0.0000000
## Bryum.c.f..pallescens 1.00000000 0.0000000
## Bryum.capillare 1.00000000 0.0000000
## Bryum.spp. 0.01234568 0.9876543
## Calliergonella.cupsidata 1.00000000 0.0000000
## Calypogeia.arguta 1.00000000 0.0000000
## Campanula.rotundifolia 1.00000000 0.0000000
## Carex.distans 1.00000000 0.0000000
## Carex.flacca 1.00000000 0.0000000
## Carex.panicea 0.00000000 1.0000000
## Carlina.vulgaris 1.00000000 0.0000000
## Centaurea.nigra 1.00000000 0.0000000
## Centaurium.erythraea 1.00000000 0.0000000
## Centaurium.littorale 1.00000000 0.0000000
## Centaurium.pulchellum 1.00000000 0.0000000
## Cerastium.fontanum 1.00000000 0.0000000
## Chamaenerion.angustifolium 1.00000000 0.0000000
## Cirriphyllum.piliferum 1.00000000 0.0000000
## Cirsium.arvense 1.00000000 0.0000000
## Cirsium.palustre 1.00000000 0.0000000
## Crepis.capillaris 1.00000000 0.0000000
## Cynosurus.cristatus 1.00000000 0.0000000
## Dactylis.glomerata 1.00000000 0.0000000
## Dactylorhiza.fuchsii 1.00000000 0.0000000
## Danthonia.decumbens 1.00000000 0.0000000
## Daucus.carrota 1.00000000 0.0000000
## Dicranella.spp. 1.00000000 0.0000000
## Dicranum.scoparium 1.00000000 0.0000000
## Epilobium.montanum 1.00000000 0.0000000
## Equisetum.arvense 1.00000000 0.0000000
## Equisteum.variegatum 1.00000000 0.0000000
## Erigeron.acer 1.00000000 0.0000000
## Euphrasia.agg 1.00000000 0.0000000
## Festuca.ovina 1.00000000 0.0000000
## Festuca.rubra 0.69924812 0.3007519
## Festuca.rubra.agg. 1.00000000 0.0000000
## Filipendula.ulmaria 1.00000000 0.0000000
## Fissidens.adianthoides 1.00000000 0.0000000
## Fissidens.dubius 1.00000000 0.0000000
## Fissidens.exilis 1.00000000 0.0000000
## Fragaria.vesca 1.00000000 0.0000000
## Galium.aparine 1.00000000 0.0000000
## Galium.arvense 1.00000000 0.0000000
## Galium.saxatile 1.00000000 0.0000000
## Galium.verum 1.00000000 0.0000000
## Geum.urbanum 1.00000000 0.0000000
## Glechoma.hederacea 1.00000000 0.0000000
## Helicotrichon.spp. 1.00000000 0.0000000
## Heracleum.sphondylium 1.00000000 0.0000000
## Hieracium.spp. 1.00000000 0.0000000
## Holcus.spp. 1.00000000 0.0000000
## Holcus.lanatus 1.00000000 0.0000000
## Holcus.mollis 1.00000000 0.0000000
## Homalothecium.lutescens 1.00000000 0.0000000
## Hylocomium.splendens 1.00000000 0.0000000
## Hypericum.perforatum 1.00000000 0.0000000
## Hypnum.cupressiforme 1.00000000 0.0000000
## Hypnum.imponens 1.00000000 0.0000000
## Hypnum.jutlandicum 1.00000000 0.0000000
## Hypochaeris.radicata 1.00000000 0.0000000
## Kindbergia.praelonga 1.00000000 0.0000000
## Lathyrus.pratensis 1.00000000 0.0000000
## Leontodon.hispidus 1.00000000 0.0000000
## Leontodon.saxatilis 1.00000000 0.0000000
## Leucanthemum.vulgare 0.54545455 0.4545455
## Linum.catharticum 1.00000000 0.0000000
## Lolium.perenne 1.00000000 0.0000000
## Lophocolea.semiteres 1.00000000 0.0000000
## Lotus.corniculatus 1.00000000 0.0000000
## Luzula.multiflora 1.00000000 0.0000000
## Lysimachia.maritima 1.00000000 0.0000000
## Medicago.lupulina 1.00000000 0.0000000
## Myosotis.arvensis 1.00000000 0.0000000
## Ononis.repens 0.89417989 0.1058201
## Oxalis.acetosella 1.00000000 0.0000000
## Pastinaca.sativa 1.00000000 0.0000000
## Pentaglottis.sempervirens 1.00000000 0.0000000
## Pillosella.officinarum 1.00000000 0.0000000
## Plantago.coronopus 1.00000000 0.0000000
## Plantago.lanceolata 1.00000000 0.0000000
## Pleurozium.schreberi 1.00000000 0.0000000
## Poa.annua 0.06313646 0.9368635
## Poa.spp. 1.00000000 0.0000000
## Polytrichum.commune 1.00000000 0.0000000
## Polytrichum.commune.agg. 1.00000000 0.0000000
## Polytrichum.formosum 1.00000000 0.0000000
## Potentilla.reptans 1.00000000 0.0000000
## Prunella.vulgaris 1.00000000 0.0000000
## Pseudoscleropidum.purum 1.00000000 0.0000000
## Pteridium.aquilinum 1.00000000 0.0000000
## Ranunculus.acris 1.00000000 0.0000000
## Ranunculus.repens 1.00000000 0.0000000
## Reseda.lutea 1.00000000 0.0000000
## Rhinanthus.minor 1.00000000 0.0000000
## Rhizomnium.punctatum 1.00000000 0.0000000
## Rhytidadelphus.squarrosus 1.00000000 0.0000000
## Rhytidadelphus.triquetris 1.00000000 0.0000000
## Rubus.fruticosus 1.00000000 0.0000000
## Sanguisorba.minor.spp.minor 1.00000000 0.0000000
## Saniona.uncinata 1.00000000 0.0000000
## Sedum.anglicum 1.00000000 0.0000000
## Senecio.jacobaea 1.00000000 0.0000000
## Senecio.vulgaris 1.00000000 0.0000000
## Sonchus.arvensis 1.00000000 0.0000000
## Stachys.sylvatica 1.00000000 0.0000000
## Stellaria.apetala 1.00000000 0.0000000
## Taraxacum.agg. 1.00000000 0.0000000
## Thuidium.tamariscinum 1.00000000 0.0000000
## Thymus.polytrichus 0.06788247 0.9321175
## Trichostomum.crispulum 0.14893617 0.8510638
## Trifolium.campestre 1.00000000 0.0000000
## Trifolium.dubium 1.00000000 0.0000000
## Trifolium.pratense 1.00000000 0.0000000
## Trifolium.repens 1.00000000 0.0000000
## Trisetum.flavescens 1.00000000 0.0000000
## Tussilago.farfara 1.00000000 0.0000000
## Urtica.diocia 1.00000000 0.0000000
## Veronica.officinalis 1.00000000 0.0000000
## Vicia.sativa 1.00000000 0.0000000
## Viola.riviniana 1.00000000 0.0000000
## Weissia.controversa 1.00000000 0.0000000
## Zygodon.stirtonii 1.00000000 0.0000000
##
## $indval
## 1 5
## Agrostis.spp. 0.200000000 0.0000000
## Agrostis.canina 0.025000000 0.0000000
## Alchemilla.mollis 0.025000000 0.0000000
## Alopercus.pratensis 0.025000000 0.0000000
## Angelica.sylvestris 0.050000000 0.0000000
## Anthoxanthum.odoratum 0.150000000 0.0000000
## Anthyllis.vulneraria 0.002989863 0.9701014
## Aphanes.arvensis 0.075000000 0.0000000
## Arrhenatherum.elatius 0.200000000 0.0000000
## Atrichum.undulatum 0.050000000 0.0000000
## Avenula.pratensis 0.025000000 0.0000000
## Bellis.perennis 0.174082569 0.3669725
## Betula.pubescens 0.025000000 0.0000000
## Blackstonia.perfoliata 0.025000000 0.0000000
## Brachythecium.albicans 0.025000000 0.0000000
## Brachythecium.glareosum 0.025000000 0.0000000
## Brachythecium.mildeanum 0.100000000 0.0000000
## Brachythecium.rutabulum 0.150000000 0.0000000
## Briza.media 0.075000000 0.0000000
## Bromus.hordeaceus 0.025000000 0.0000000
## Bryum.c.f..caespiticium 0.025000000 0.0000000
## Bryum.c.f..pallescens 0.075000000 0.0000000
## Bryum.capillare 0.025000000 0.0000000
## Bryum.spp. 0.000617284 0.9876543
## Calliergonella.cupsidata 0.375000000 0.0000000
## Calypogeia.arguta 0.200000000 0.0000000
## Campanula.rotundifolia 0.025000000 0.0000000
## Carex.distans 0.050000000 0.0000000
## Carex.flacca 0.175000000 0.0000000
## Carex.panicea 0.000000000 1.0000000
## Carlina.vulgaris 0.250000000 0.0000000
## Centaurea.nigra 0.050000000 0.0000000
## Centaurium.erythraea 0.050000000 0.0000000
## Centaurium.littorale 0.100000000 0.0000000
## Centaurium.pulchellum 0.025000000 0.0000000
## Cerastium.fontanum 0.175000000 0.0000000
## Chamaenerion.angustifolium 0.025000000 0.0000000
## Cirriphyllum.piliferum 0.025000000 0.0000000
## Cirsium.arvense 0.075000000 0.0000000
## Cirsium.palustre 0.050000000 0.0000000
## Crepis.capillaris 0.050000000 0.0000000
## Cynosurus.cristatus 0.075000000 0.0000000
## Dactylis.glomerata 0.150000000 0.0000000
## Dactylorhiza.fuchsii 0.050000000 0.0000000
## Danthonia.decumbens 0.025000000 0.0000000
## Daucus.carrota 0.050000000 0.0000000
## Dicranella.spp. 0.025000000 0.0000000
## Dicranum.scoparium 0.125000000 0.0000000
## Epilobium.montanum 0.075000000 0.0000000
## Equisetum.arvense 0.075000000 0.0000000
## Equisteum.variegatum 0.025000000 0.0000000
## Erigeron.acer 0.050000000 0.0000000
## Euphrasia.agg 0.275000000 0.0000000
## Festuca.ovina 0.175000000 0.0000000
## Festuca.rubra 0.244736842 0.3007519
## Festuca.rubra.agg. 0.025000000 0.0000000
## Filipendula.ulmaria 0.075000000 0.0000000
## Fissidens.adianthoides 0.025000000 0.0000000
## Fissidens.dubius 0.050000000 0.0000000
## Fissidens.exilis 0.025000000 0.0000000
## Fragaria.vesca 0.150000000 0.0000000
## Galium.aparine 0.025000000 0.0000000
## Galium.arvense 0.025000000 0.0000000
## Galium.saxatile 0.025000000 0.0000000
## Galium.verum 0.100000000 0.0000000
## Geum.urbanum 0.025000000 0.0000000
## Glechoma.hederacea 0.025000000 0.0000000
## Helicotrichon.spp. 0.025000000 0.0000000
## Heracleum.sphondylium 0.075000000 0.0000000
## Hieracium.spp. 0.025000000 0.0000000
## Holcus.spp. 0.525000000 0.0000000
## Holcus.lanatus 0.300000000 0.0000000
## Holcus.mollis 0.150000000 0.0000000
## Homalothecium.lutescens 0.050000000 0.0000000
## Hylocomium.splendens 0.175000000 0.0000000
## Hypericum.perforatum 0.150000000 0.0000000
## Hypnum.cupressiforme 0.250000000 0.0000000
## Hypnum.imponens 0.025000000 0.0000000
## Hypnum.jutlandicum 0.075000000 0.0000000
## Hypochaeris.radicata 0.025000000 0.0000000
## Kindbergia.praelonga 0.150000000 0.0000000
## Lathyrus.pratensis 0.075000000 0.0000000
## Leontodon.hispidus 0.125000000 0.0000000
## Leontodon.saxatilis 0.025000000 0.0000000
## Leucanthemum.vulgare 0.177272727 0.4545455
## Linum.catharticum 0.125000000 0.0000000
## Lolium.perenne 0.100000000 0.0000000
## Lophocolea.semiteres 0.025000000 0.0000000
## Lotus.corniculatus 0.450000000 0.0000000
## Luzula.multiflora 0.025000000 0.0000000
## Lysimachia.maritima 0.050000000 0.0000000
## Medicago.lupulina 0.125000000 0.0000000
## Myosotis.arvensis 0.125000000 0.0000000
## Ononis.repens 0.156481481 0.1058201
## Oxalis.acetosella 0.025000000 0.0000000
## Pastinaca.sativa 0.025000000 0.0000000
## Pentaglottis.sempervirens 0.025000000 0.0000000
## Pillosella.officinarum 0.300000000 0.0000000
## Plantago.coronopus 0.100000000 0.0000000
## Plantago.lanceolata 0.325000000 0.0000000
## Pleurozium.schreberi 0.100000000 0.0000000
## Poa.annua 0.003156823 0.9368635
## Poa.spp. 0.025000000 0.0000000
## Polytrichum.commune 0.025000000 0.0000000
## Polytrichum.commune.agg. 0.025000000 0.0000000
## Polytrichum.formosum 0.025000000 0.0000000
## Potentilla.reptans 0.100000000 0.0000000
## Prunella.vulgaris 0.125000000 0.0000000
## Pseudoscleropidum.purum 0.200000000 0.0000000
## Pteridium.aquilinum 0.075000000 0.0000000
## Ranunculus.acris 0.025000000 0.0000000
## Ranunculus.repens 0.075000000 0.0000000
## Reseda.lutea 0.025000000 0.0000000
## Rhinanthus.minor 0.025000000 0.0000000
## Rhizomnium.punctatum 0.025000000 0.0000000
## Rhytidadelphus.squarrosus 0.325000000 0.0000000
## Rhytidadelphus.triquetris 0.050000000 0.0000000
## Rubus.fruticosus 0.050000000 0.0000000
## Sanguisorba.minor.spp.minor 0.050000000 0.0000000
## Saniona.uncinata 0.050000000 0.0000000
## Sedum.anglicum 0.025000000 0.0000000
## Senecio.jacobaea 0.050000000 0.0000000
## Senecio.vulgaris 0.025000000 0.0000000
## Sonchus.arvensis 0.025000000 0.0000000
## Stachys.sylvatica 0.050000000 0.0000000
## Stellaria.apetala 0.025000000 0.0000000
## Taraxacum.agg. 0.275000000 0.0000000
## Thuidium.tamariscinum 0.075000000 0.0000000
## Thymus.polytrichus 0.011879433 0.9321175
## Trichostomum.crispulum 0.018617021 0.8510638
## Trifolium.campestre 0.175000000 0.0000000
## Trifolium.dubium 0.050000000 0.0000000
## Trifolium.pratense 0.100000000 0.0000000
## Trifolium.repens 0.125000000 0.0000000
## Trisetum.flavescens 0.100000000 0.0000000
## Tussilago.farfara 0.075000000 0.0000000
## Urtica.diocia 0.100000000 0.0000000
## Veronica.officinalis 0.025000000 0.0000000
## Vicia.sativa 0.025000000 0.0000000
## Viola.riviniana 0.025000000 0.0000000
## Weissia.controversa 0.025000000 0.0000000
## Zygodon.stirtonii 0.025000000 0.0000000
##
## $maxcls
## Agrostis.spp. Agrostis.canina
## 1 1
## Alchemilla.mollis Alopercus.pratensis
## 1 1
## Angelica.sylvestris Anthoxanthum.odoratum
## 1 1
## Anthyllis.vulneraria Aphanes.arvensis
## 2 1
## Arrhenatherum.elatius Atrichum.undulatum
## 1 1
## Avenula.pratensis Bellis.perennis
## 1 2
## Betula.pubescens Blackstonia.perfoliata
## 1 1
## Brachythecium.albicans Brachythecium.glareosum
## 1 1
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1 1
## Briza.media Bromus.hordeaceus
## 1 1
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1 1
## Bryum.capillare Bryum.spp.
## 1 2
## Calliergonella.cupsidata Calypogeia.arguta
## 1 1
## Campanula.rotundifolia Carex.distans
## 1 1
## Carex.flacca Carex.panicea
## 1 2
## Carlina.vulgaris Centaurea.nigra
## 1 1
## Centaurium.erythraea Centaurium.littorale
## 1 1
## Centaurium.pulchellum Cerastium.fontanum
## 1 1
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1 1
## Cirsium.arvense Cirsium.palustre
## 1 1
## Crepis.capillaris Cynosurus.cristatus
## 1 1
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1 1
## Danthonia.decumbens Daucus.carrota
## 1 1
## Dicranella.spp. Dicranum.scoparium
## 1 1
## Epilobium.montanum Equisetum.arvense
## 1 1
## Equisteum.variegatum Erigeron.acer
## 1 1
## Euphrasia.agg Festuca.ovina
## 1 1
## Festuca.rubra Festuca.rubra.agg.
## 2 1
## Filipendula.ulmaria Fissidens.adianthoides
## 1 1
## Fissidens.dubius Fissidens.exilis
## 1 1
## Fragaria.vesca Galium.aparine
## 1 1
## Galium.arvense Galium.saxatile
## 1 1
## Galium.verum Geum.urbanum
## 1 1
## Glechoma.hederacea Helicotrichon.spp.
## 1 1
## Heracleum.sphondylium Hieracium.spp.
## 1 1
## Holcus.spp. Holcus.lanatus
## 1 1
## Holcus.mollis Homalothecium.lutescens
## 1 1
## Hylocomium.splendens Hypericum.perforatum
## 1 1
## Hypnum.cupressiforme Hypnum.imponens
## 1 1
## Hypnum.jutlandicum Hypochaeris.radicata
## 1 1
## Kindbergia.praelonga Lathyrus.pratensis
## 1 1
## Leontodon.hispidus Leontodon.saxatilis
## 1 1
## Leucanthemum.vulgare Linum.catharticum
## 2 1
## Lolium.perenne Lophocolea.semiteres
## 1 1
## Lotus.corniculatus Luzula.multiflora
## 1 1
## Lysimachia.maritima Medicago.lupulina
## 1 1
## Myosotis.arvensis Ononis.repens
## 1 1
## Oxalis.acetosella Pastinaca.sativa
## 1 1
## Pentaglottis.sempervirens Pillosella.officinarum
## 1 1
## Plantago.coronopus Plantago.lanceolata
## 1 1
## Pleurozium.schreberi Poa.annua
## 1 2
## Poa.spp. Polytrichum.commune
## 1 1
## Polytrichum.commune.agg. Polytrichum.formosum
## 1 1
## Potentilla.reptans Prunella.vulgaris
## 1 1
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1 1
## Ranunculus.acris Ranunculus.repens
## 1 1
## Reseda.lutea Rhinanthus.minor
## 1 1
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1 1
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1 1
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1 1
## Sedum.anglicum Senecio.jacobaea
## 1 1
## Senecio.vulgaris Sonchus.arvensis
## 1 1
## Stachys.sylvatica Stellaria.apetala
## 1 1
## Taraxacum.agg. Thuidium.tamariscinum
## 1 1
## Thymus.polytrichus Trichostomum.crispulum
## 2 2
## Trifolium.campestre Trifolium.dubium
## 1 1
## Trifolium.pratense Trifolium.repens
## 1 1
## Trisetum.flavescens Tussilago.farfara
## 1 1
## Urtica.diocia Veronica.officinalis
## 1 1
## Vicia.sativa Viola.riviniana
## 1 1
## Weissia.controversa Zygodon.stirtonii
## 1 1
##
## $indcls
## Agrostis.spp. Agrostis.canina
## 0.2000000 0.0250000
## Alchemilla.mollis Alopercus.pratensis
## 0.0250000 0.0250000
## Angelica.sylvestris Anthoxanthum.odoratum
## 0.0500000 0.1500000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.9701014 0.0750000
## Arrhenatherum.elatius Atrichum.undulatum
## 0.2000000 0.0500000
## Avenula.pratensis Bellis.perennis
## 0.0250000 0.3669725
## Betula.pubescens Blackstonia.perfoliata
## 0.0250000 0.0250000
## Brachythecium.albicans Brachythecium.glareosum
## 0.0250000 0.0250000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 0.1000000 0.1500000
## Briza.media Bromus.hordeaceus
## 0.0750000 0.0250000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 0.0250000 0.0750000
## Bryum.capillare Bryum.spp.
## 0.0250000 0.9876543
## Calliergonella.cupsidata Calypogeia.arguta
## 0.3750000 0.2000000
## Campanula.rotundifolia Carex.distans
## 0.0250000 0.0500000
## Carex.flacca Carex.panicea
## 0.1750000 1.0000000
## Carlina.vulgaris Centaurea.nigra
## 0.2500000 0.0500000
## Centaurium.erythraea Centaurium.littorale
## 0.0500000 0.1000000
## Centaurium.pulchellum Cerastium.fontanum
## 0.0250000 0.1750000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 0.0250000 0.0250000
## Cirsium.arvense Cirsium.palustre
## 0.0750000 0.0500000
## Crepis.capillaris Cynosurus.cristatus
## 0.0500000 0.0750000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 0.1500000 0.0500000
## Danthonia.decumbens Daucus.carrota
## 0.0250000 0.0500000
## Dicranella.spp. Dicranum.scoparium
## 0.0250000 0.1250000
## Epilobium.montanum Equisetum.arvense
## 0.0750000 0.0750000
## Equisteum.variegatum Erigeron.acer
## 0.0250000 0.0500000
## Euphrasia.agg Festuca.ovina
## 0.2750000 0.1750000
## Festuca.rubra Festuca.rubra.agg.
## 0.3007519 0.0250000
## Filipendula.ulmaria Fissidens.adianthoides
## 0.0750000 0.0250000
## Fissidens.dubius Fissidens.exilis
## 0.0500000 0.0250000
## Fragaria.vesca Galium.aparine
## 0.1500000 0.0250000
## Galium.arvense Galium.saxatile
## 0.0250000 0.0250000
## Galium.verum Geum.urbanum
## 0.1000000 0.0250000
## Glechoma.hederacea Helicotrichon.spp.
## 0.0250000 0.0250000
## Heracleum.sphondylium Hieracium.spp.
## 0.0750000 0.0250000
## Holcus.spp. Holcus.lanatus
## 0.5250000 0.3000000
## Holcus.mollis Homalothecium.lutescens
## 0.1500000 0.0500000
## Hylocomium.splendens Hypericum.perforatum
## 0.1750000 0.1500000
## Hypnum.cupressiforme Hypnum.imponens
## 0.2500000 0.0250000
## Hypnum.jutlandicum Hypochaeris.radicata
## 0.0750000 0.0250000
## Kindbergia.praelonga Lathyrus.pratensis
## 0.1500000 0.0750000
## Leontodon.hispidus Leontodon.saxatilis
## 0.1250000 0.0250000
## Leucanthemum.vulgare Linum.catharticum
## 0.4545455 0.1250000
## Lolium.perenne Lophocolea.semiteres
## 0.1000000 0.0250000
## Lotus.corniculatus Luzula.multiflora
## 0.4500000 0.0250000
## Lysimachia.maritima Medicago.lupulina
## 0.0500000 0.1250000
## Myosotis.arvensis Ononis.repens
## 0.1250000 0.1564815
## Oxalis.acetosella Pastinaca.sativa
## 0.0250000 0.0250000
## Pentaglottis.sempervirens Pillosella.officinarum
## 0.0250000 0.3000000
## Plantago.coronopus Plantago.lanceolata
## 0.1000000 0.3250000
## Pleurozium.schreberi Poa.annua
## 0.1000000 0.9368635
## Poa.spp. Polytrichum.commune
## 0.0250000 0.0250000
## Polytrichum.commune.agg. Polytrichum.formosum
## 0.0250000 0.0250000
## Potentilla.reptans Prunella.vulgaris
## 0.1000000 0.1250000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 0.2000000 0.0750000
## Ranunculus.acris Ranunculus.repens
## 0.0250000 0.0750000
## Reseda.lutea Rhinanthus.minor
## 0.0250000 0.0250000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 0.0250000 0.3250000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 0.0500000 0.0500000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 0.0500000 0.0500000
## Sedum.anglicum Senecio.jacobaea
## 0.0250000 0.0500000
## Senecio.vulgaris Sonchus.arvensis
## 0.0250000 0.0250000
## Stachys.sylvatica Stellaria.apetala
## 0.0500000 0.0250000
## Taraxacum.agg. Thuidium.tamariscinum
## 0.2750000 0.0750000
## Thymus.polytrichus Trichostomum.crispulum
## 0.9321175 0.8510638
## Trifolium.campestre Trifolium.dubium
## 0.1750000 0.0500000
## Trifolium.pratense Trifolium.repens
## 0.1000000 0.1250000
## Trisetum.flavescens Tussilago.farfara
## 0.1000000 0.0750000
## Urtica.diocia Veronica.officinalis
## 0.1000000 0.0250000
## Vicia.sativa Viola.riviniana
## 0.0250000 0.0250000
## Weissia.controversa Zygodon.stirtonii
## 0.0250000 0.0250000
##
## $pval
## Agrostis.spp. Agrostis.canina
## 1.000 1.000
## Alchemilla.mollis Alopercus.pratensis
## 1.000 1.000
## Angelica.sylvestris Anthoxanthum.odoratum
## 1.000 1.000
## Anthyllis.vulneraria Aphanes.arvensis
## 0.021 1.000
## Arrhenatherum.elatius Atrichum.undulatum
## 1.000 1.000
## Avenula.pratensis Bellis.perennis
## 1.000 0.292
## Betula.pubescens Blackstonia.perfoliata
## 1.000 1.000
## Brachythecium.albicans Brachythecium.glareosum
## 1.000 1.000
## Brachythecium.mildeanum Brachythecium.rutabulum
## 1.000 1.000
## Briza.media Bromus.hordeaceus
## 1.000 1.000
## Bryum.c.f..caespiticium Bryum.c.f..pallescens
## 1.000 1.000
## Bryum.capillare Bryum.spp.
## 1.000 0.021
## Calliergonella.cupsidata Calypogeia.arguta
## 0.925 1.000
## Campanula.rotundifolia Carex.distans
## 1.000 1.000
## Carex.flacca Carex.panicea
## 0.980 0.033
## Carlina.vulgaris Centaurea.nigra
## 1.000 1.000
## Centaurium.erythraea Centaurium.littorale
## 1.000 1.000
## Centaurium.pulchellum Cerastium.fontanum
## 1.000 1.000
## Chamaenerion.angustifolium Cirriphyllum.piliferum
## 1.000 1.000
## Cirsium.arvense Cirsium.palustre
## 1.000 1.000
## Crepis.capillaris Cynosurus.cristatus
## 1.000 1.000
## Dactylis.glomerata Dactylorhiza.fuchsii
## 1.000 1.000
## Danthonia.decumbens Daucus.carrota
## 1.000 1.000
## Dicranella.spp. Dicranum.scoparium
## 1.000 1.000
## Epilobium.montanum Equisetum.arvense
## 1.000 1.000
## Equisteum.variegatum Erigeron.acer
## 1.000 1.000
## Euphrasia.agg Festuca.ovina
## 0.950 1.000
## Festuca.rubra Festuca.rubra.agg.
## 0.936 1.000
## Filipendula.ulmaria Fissidens.adianthoides
## 1.000 1.000
## Fissidens.dubius Fissidens.exilis
## 1.000 1.000
## Fragaria.vesca Galium.aparine
## 1.000 1.000
## Galium.arvense Galium.saxatile
## 1.000 1.000
## Galium.verum Geum.urbanum
## 1.000 1.000
## Glechoma.hederacea Helicotrichon.spp.
## 1.000 1.000
## Heracleum.sphondylium Hieracium.spp.
## 1.000 1.000
## Holcus.spp. Holcus.lanatus
## 0.790 0.938
## Holcus.mollis Homalothecium.lutescens
## 0.984 1.000
## Hylocomium.splendens Hypericum.perforatum
## 0.979 1.000
## Hypnum.cupressiforme Hypnum.imponens
## 1.000 1.000
## Hypnum.jutlandicum Hypochaeris.radicata
## 1.000 1.000
## Kindbergia.praelonga Lathyrus.pratensis
## 1.000 1.000
## Leontodon.hispidus Leontodon.saxatilis
## 1.000 1.000
## Leucanthemum.vulgare Linum.catharticum
## 0.253 1.000
## Lolium.perenne Lophocolea.semiteres
## 1.000 1.000
## Lotus.corniculatus Luzula.multiflora
## 0.778 1.000
## Lysimachia.maritima Medicago.lupulina
## 1.000 1.000
## Myosotis.arvensis Ononis.repens
## 1.000 1.000
## Oxalis.acetosella Pastinaca.sativa
## 1.000 1.000
## Pentaglottis.sempervirens Pillosella.officinarum
## 1.000 0.889
## Plantago.coronopus Plantago.lanceolata
## 1.000 0.928
## Pleurozium.schreberi Poa.annua
## 1.000 0.063
## Poa.spp. Polytrichum.commune
## 1.000 1.000
## Polytrichum.commune.agg. Polytrichum.formosum
## 1.000 1.000
## Potentilla.reptans Prunella.vulgaris
## 1.000 1.000
## Pseudoscleropidum.purum Pteridium.aquilinum
## 1.000 1.000
## Ranunculus.acris Ranunculus.repens
## 1.000 1.000
## Reseda.lutea Rhinanthus.minor
## 1.000 1.000
## Rhizomnium.punctatum Rhytidadelphus.squarrosus
## 1.000 1.000
## Rhytidadelphus.triquetris Rubus.fruticosus
## 1.000 1.000
## Sanguisorba.minor.spp.minor Saniona.uncinata
## 1.000 1.000
## Sedum.anglicum Senecio.jacobaea
## 1.000 1.000
## Senecio.vulgaris Sonchus.arvensis
## 1.000 1.000
## Stachys.sylvatica Stellaria.apetala
## 1.000 1.000
## Taraxacum.agg. Thuidium.tamariscinum
## 1.000 1.000
## Thymus.polytrichus Trichostomum.crispulum
## 0.045 0.129
## Trifolium.campestre Trifolium.dubium
## 1.000 1.000
## Trifolium.pratense Trifolium.repens
## 1.000 1.000
## Trisetum.flavescens Tussilago.farfara
## 1.000 1.000
## Urtica.diocia Veronica.officinalis
## 1.000 1.000
## Vicia.sativa Viola.riviniana
## 1.000 1.000
## Weissia.controversa Zygodon.stirtonii
## 1.000 1.000
##
## $error
## [1] 0
##
## attr(,"class")
## [1] "indval"
#Carex panicea has a high indval score of 1 and a low p value of 0.022. This is the #indicator species for Valentinite.