Summary statistics for the UK Biobank GWAS of IMT (PMID: 31801372).
"These are the results for the GWAS of IMTmean, IMTmax and IMTmeanmax (sex combined) and IMTmean (women only and men only)"
Column names:
SNP = rsID
CHR = chromosome
BP = base pair position
GENPOS = genetic position either from bim file or interpolated from genetic map.
ALLELE1 = effect allele
ALLELE0 = other allele (equivalent to allele 2 standard notation)
A1FREQ = effect allele frequency
INFO = imputation (IMPUTE2) info score
CHISQ_LINREG = chi-squared statistic (linear regression)
P_LINREG = p value for above
BETA = effect size value for LMM GWAS model
SE = standard error of above effect size
CHISQ_BOLT_LMM_INF = chi-squared statistic for LMM (infinitesimal model)
P_BOLT_LMM_INF = p value for BETA
CHISQ_BOLT_LMM = chi-squared statistic for LMM (non-infinitesimal model)
P_BOLT_LMM = p value for LMM (non-infinitesimal model)